AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0140510

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140510 MtrunA17_Chr3g0135621 96.865 606 18 1 1 606 1 605 0.0 1120
Msa0140510 MtrunA17_Chr3g0135631 96.287 404 14 1 203 606 1 403 0.0 712
Msa0140510 MtrunA17_Chr1g0151761 62.969 640 142 18 1 588 1 597 0.0 593
Msa0140510 MtrunA17_Chr3g0135641 98.942 189 2 0 1 189 1 189 2.87e-131 382
Msa0140510 MtrunA17_Chr3g0135641 46.377 69 34 2 182 249 90 156 9.42e-13 67.4
Msa0140510 MtrunA17_Chr5g0396111 56.069 173 72 1 82 250 181 353 8.82e-58 198
Msa0140510 MtrunA17_Chr7g0217251 27.675 542 256 27 68 561 141 594 1.92e-12 70.1
Msa0140510 MtrunA17_Chr1g0197441 29.187 209 117 6 89 283 39 230 1.44e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0140510 AT2G25970.1 53.177 598 181 27 26 587 66 600 8.01e-129 392
Msa0140510 AT1G33680.1 35.979 567 247 28 86 600 232 734 6.95e-54 196
Msa0140510 AT4G10070.1 43.972 282 127 10 82 349 172 436 1.93e-53 194
Msa0140510 AT5G04430.2 30.769 208 124 7 89 289 38 232 5.60e-14 73.9
Msa0140510 AT5G04430.1 31.548 168 102 4 89 253 38 195 2.78e-12 68.6

Find 260 sgRNAs with CRISPR-Local

Find 385 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGATGAAAACAAACTTATTT+TGG 0.160449 1_3:+74753540 Msa0140510:three_prime_UTR
TCCATGTCATTTGCAGAATT+TGG 0.165836 1_3:+74753727 Msa0140510:three_prime_UTR
CTTTAGGTTGGCCTTATAAT+TGG 0.202642 1_3:+74751036 Msa0140510:intron
TTCTCTTGTGATGGTTATTA+TGG 0.204549 1_3:+74753446 Msa0140510:three_prime_UTR
GGAACTTCGCCGCTCATTTC+AGG 0.205981 1_3:-74753707 None:intergenic
GGTAGGGTTGGTGTTCTTAT+TGG 0.218158 1_3:+74749746 Msa0140510:CDS
CAGTAGTGGGTTGGGAAGTT+TGG 0.232400 1_3:-74752947 None:intergenic
GACTAGGATGGTTGAACTTA+TGG 0.236098 1_3:+74749859 Msa0140510:CDS
CAGAATCGTCTCAGAAATTC+AGG 0.249484 1_3:+74752375 Msa0140510:intron
AGTAGTGGGTTGGGAAGTTT+GGG 0.253746 1_3:-74752946 None:intergenic
TATCGATGTTGCTATCAAAA+TGG 0.259984 1_3:-74753501 None:intergenic
AGTGCAAATCCACCTGTTTA+TGG 0.260187 1_3:+74753113 Msa0140510:CDS
CTCCTCCTTTACCAATTATA+AGG 0.261517 1_3:-74751047 None:intergenic
TAGGCTGAAGCTGGGGCTTC+TGG 0.266896 1_3:+74750852 Msa0140510:intron
AGTTGGAAGCGTGCCCTTCT+TGG 0.286199 1_3:-74752902 None:intergenic
GGTTGGTAGCATAGCCTTGC+TGG 0.287848 1_3:-74752974 None:intergenic
TTCACTTTCTTCCTCTCTAT+AGG 0.289785 1_3:+74749431 Msa0140510:five_prime_UTR
ATTACTCCCACTGCCATAAC+TGG 0.291727 1_3:-74752874 None:intergenic
CTCTATAGGGTTTGTTTCAA+TGG 0.295151 1_3:+74749445 Msa0140510:exon
TTCTACCGGAGCACGAATTC+AGG 0.305971 1_3:+74751092 Msa0140510:CDS
AGACGGATGGTTGCACAATC+TGG 0.309169 1_3:+74750885 Msa0140510:CDS
ACCATCCTAGTCTGAGAATT+AGG 0.309685 1_3:-74749848 None:intergenic
CATCCCCACACCTTATTGTT+TGG 0.311267 1_3:-74750933 None:intergenic
CTTTCTGTTGATGTATCACC+TGG 0.313635 1_3:-74751300 None:intergenic
TCACTTTCTTCCTCTCTATA+GGG 0.320093 1_3:+74749432 Msa0140510:five_prime_UTR
GAAGGGCACGCTTCCAACTA+TGG 0.327467 1_3:+74752906 Msa0140510:CDS
TGATGGTTATTATGGTCCTT+CGG 0.350858 1_3:+74753454 Msa0140510:three_prime_UTR
GTGTGGGAAGGAATTGGATT+AGG 0.357179 1_3:-74749402 None:intergenic
TTTGCTGTTGCTGGGGTTGT+TGG 0.358645 1_3:-74752662 None:intergenic
TCATATGGAAATAGTTCTTA+TGG 0.360383 1_3:+74753323 Msa0140510:CDS
GTTATCGGACTTGGTTCGTT+TGG 0.360575 1_3:-74749624 None:intergenic
AACTTCTTGAGCTCGTTGTT+TGG 0.361408 1_3:-74749552 None:intergenic
GAAGCTGGGGCTTCTGGCGG+TGG 0.361827 1_3:+74750858 Msa0140510:CDS
TTTGCTGATTCAATTTGATC+AGG 0.363459 1_3:-74751345 None:intergenic
GATTCAAGTTACTCGTGATA+TGG 0.369842 1_3:+74749817 Msa0140510:CDS
CCATAGGCCGCTTGGGAGGT+AGG 0.372582 1_3:-74753032 None:intergenic
TTTATTAACTAGGCTGAAGC+TGG 0.373039 1_3:+74750843 Msa0140510:intron
TTATGGTGCTGGTTATGTTC+AGG 0.375380 1_3:+74753340 Msa0140510:CDS
GATGCAAATACCAAACAATA+AGG 0.377129 1_3:+74750923 Msa0140510:CDS
TTATCGGACTTGGTTCGTTT+GGG 0.378392 1_3:-74749623 None:intergenic
GAGTTCGATGTCCGTGGCGG+TGG 0.387307 1_3:-74749516 None:intergenic
CCGGTGGATATTCCACCAAC+TGG 0.387764 1_3:+74752577 Msa0140510:CDS
AATGCGCAACAACAACAATC+TGG 0.391525 1_3:+74752801 Msa0140510:CDS
TGTTGCTGATCATATGTTTG+TGG 0.391746 1_3:-74752834 None:intergenic
GCTGAGCATACCCGGAAGGC+GGG 0.392161 1_3:-74753199 None:intergenic
GGTCCTTCACAGCCAGCTGA+TGG 0.395783 1_3:+74752693 Msa0140510:CDS
GGCCAGACTCCGCCGTCATA+TGG 0.396618 1_3:+74753308 Msa0140510:CDS
TTAGCTCCTATTCAACCTTC+CGG 0.397554 1_3:-74753577 None:intergenic
GTTGGTGTTCTTATTGGTAA+AGG 0.399271 1_3:+74749752 Msa0140510:CDS
TGGAGCACCGTTATCGGACT+TGG 0.399369 1_3:-74749633 None:intergenic
CCTACCTCCCAAGCGGCCTA+TGG 0.399491 1_3:+74753032 Msa0140510:CDS
CCCCAGCAACAGCAAAATCC+TGG 0.404109 1_3:+74752669 Msa0140510:CDS
TTCCATATGACGGCGGAGTC+TGG 0.406065 1_3:-74753310 None:intergenic
AGTCAACCACAGTCTGGTTA+TGG 0.407882 1_3:+74753056 Msa0140510:CDS
GTTGGAAGCGTGCCCTTCTT+GGG 0.411122 1_3:-74752901 None:intergenic
TATGATCAGCAACAAGGTTA+TGG 0.411167 1_3:+74752843 Msa0140510:CDS
CAAGGTGGCCAGCCTGGCTA+TGG 0.413475 1_3:+74753287 Msa0140510:CDS
AATCCCGACCACCGTCTAGC+TGG 0.415564 1_3:+74752430 Msa0140510:CDS
CATAGGCCGCTTGGGAGGTA+GGG 0.417451 1_3:-74753031 None:intergenic
ACTAGGATGGTTGAACTTAT+GGG 0.418819 1_3:+74749860 Msa0140510:CDS
AACTGCACAGGCTGTTCCAC+AGG 0.420141 1_3:+74753388 Msa0140510:CDS
AACACGGTGTGGGAAGGAAT+TGG 0.425308 1_3:-74749408 None:intergenic
TATGGCTCTGCTCCCAGTTA+TGG 0.425707 1_3:+74752861 Msa0140510:CDS
TTACATTTATCTAAGCTGTA+TGG 0.426408 1_3:+74753645 Msa0140510:three_prime_UTR
GATGGTTATTATGGTCCTTC+GGG 0.428194 1_3:+74753455 Msa0140510:three_prime_UTR
AGCCAACCAGGACAGGGTTA+TGG 0.429254 1_3:+74752756 Msa0140510:CDS
CTGGTTGAGGAGTTCCTTGT+TGG 0.431801 1_3:-74752995 None:intergenic
GAAGCGTGCCCTTCTTGGGT+TGG 0.433826 1_3:-74752897 None:intergenic
TGGTTATAGCCAACCAGGAC+AGG 0.437107 1_3:+74752749 Msa0140510:CDS
TAGTGGGTTGGGAAGTTTGG+GGG 0.438776 1_3:-74752944 None:intergenic
ATTGTGGAATATATGTTAAA+AGG 0.439419 1_3:+74753754 Msa0140510:three_prime_UTR
CTGGGCAACAGTAGTGGGTT+GGG 0.439592 1_3:-74752955 None:intergenic
GCTTGTTGCACAGGAGCAGC+AGG 0.441689 1_3:-74752459 None:intergenic
TATTATGGTCCTTCGGGATG+TGG 0.441964 1_3:+74753461 Msa0140510:three_prime_UTR
GCTCCTCAAGGTGGCCAGCC+TGG 0.443253 1_3:+74753281 Msa0140510:CDS
TCTTGACCATAACCCTGTCC+TGG 0.444195 1_3:-74752762 None:intergenic
CGATTGTGGAGCACCGTTAT+CGG 0.444219 1_3:-74749639 None:intergenic
GACGGATGGTTGCACAATCT+GGG 0.446354 1_3:+74750886 Msa0140510:CDS
CGATAACGGTGCTCCACAAT+CGG 0.446619 1_3:+74749640 Msa0140510:CDS
ATCGATGTTGCTATCAAAAT+GGG 0.453806 1_3:-74753500 None:intergenic
GTTGACTTCCATAGGCCGCT+TGG 0.454305 1_3:-74753040 None:intergenic
AGCCCAGCTAGACGGTGGTC+GGG 0.454864 1_3:-74752433 None:intergenic
AGTGGGTTGGGAAGTTTGGG+GGG 0.456628 1_3:-74752943 None:intergenic
GTCCTTCACAGCCAGCTGAT+GGG 0.456888 1_3:+74752694 Msa0140510:CDS
TGAGCATACCCGGAAGGCGG+GGG 0.460955 1_3:-74753197 None:intergenic
TTGACTTCCATAGGCCGCTT+GGG 0.461597 1_3:-74753039 None:intergenic
AGCTAGACGGTGGTCGGGAT+TGG 0.461750 1_3:-74752428 None:intergenic
AATTGAATCAGCAAAGCAAT+TGG 0.464801 1_3:+74751353 Msa0140510:CDS
AAGTATCTTCAGATGCAATC+TGG 0.464861 1_3:+74749788 Msa0140510:CDS
CCTGTGCAACAAGCTGGTTA+TGG 0.465420 1_3:+74752468 Msa0140510:CDS
AGAACACCAACCCTACCATT+AGG 0.466222 1_3:-74749740 None:intergenic
TACAGTCAACCTCCTTCCTC+TGG 0.467231 1_3:+74752729 Msa0140510:CDS
GATAACGGTGCTCCACAATC+GGG 0.467332 1_3:+74749641 Msa0140510:CDS
GGAAATAGTTCTTATGGTGC+TGG 0.472518 1_3:+74753329 Msa0140510:CDS
TTGCTGATTCAATTTGATCA+GGG 0.472599 1_3:-74751344 None:intergenic
TCGCAGCAAGGTGGTAGTTA+TGG 0.474269 1_3:+74749695 Msa0140510:CDS
AAGAAGATTGAAATACCTAA+TGG 0.476293 1_3:+74749725 Msa0140510:CDS
GTTGGCCTTATAATTGGTAA+AGG 0.477296 1_3:+74751042 Msa0140510:CDS
GGCGGAGTCTGGCCATAGCC+AGG 0.479964 1_3:-74753299 None:intergenic
GACCCATCAGCTGGCTGTGA+AGG 0.481746 1_3:-74752696 None:intergenic
GGTTATGGCTATGGGCAACC+TGG 0.488138 1_3:+74752483 Msa0140510:CDS
GAGTCTGGCCATAGCCAGGC+TGG 0.490778 1_3:-74753295 None:intergenic
CAACAAGCTGGTTATGGCTA+TGG 0.490845 1_3:+74752474 Msa0140510:CDS
CCATAACCAGCTTGTTGCAC+AGG 0.496256 1_3:-74752468 None:intergenic
GGCTGAGCATACCCGGAAGG+CGG 0.497089 1_3:-74753200 None:intergenic
CTTCTGGCGGTGGCACTAGA+CGG 0.497957 1_3:+74750868 Msa0140510:CDS
GATGGACCAGAGTATGATCC+AGG 0.501151 1_3:-74752501 None:intergenic
CCAGTTGGTGGAATATCCAC+CGG 0.501220 1_3:-74752577 None:intergenic
TTCTGTTGATGTATCACCTG+GGG 0.507849 1_3:-74751298 None:intergenic
GTAGTGGGTTGGGAAGTTTG+GGG 0.508308 1_3:-74752945 None:intergenic
CCCAGCAACAGCAAAATCCT+GGG 0.508607 1_3:+74752670 Msa0140510:CDS
GTTGGTAGCATAGCCTTGCT+GGG 0.508853 1_3:-74752973 None:intergenic
GGTGAGATGGTGCAGTGGAT+TGG 0.508922 1_3:-74752602 None:intergenic
CCTAGCACAGCAGGAGGCTA+TGG 0.510304 1_3:+74753149 Msa0140510:CDS
CTGCTCCCAGTTATGGCAGT+GGG 0.512052 1_3:+74752868 Msa0140510:CDS
GACTGTGATTGACCATAAAC+AGG 0.513068 1_3:-74753125 None:intergenic
TATGGAAGTCAACCACAGTC+TGG 0.513429 1_3:+74753050 Msa0140510:CDS
CCATAGCCTCCTGCTGTGCT+AGG 0.513919 1_3:-74753149 None:intergenic
TGCTGATTCAATTTGATCAG+GGG 0.517465 1_3:-74751343 None:intergenic
TAACTCTGGCTGAGCATACC+CGG 0.518719 1_3:-74753207 None:intergenic
GCTGCTCCTGTGCAACAAGC+TGG 0.519086 1_3:+74752462 Msa0140510:CDS
CTTGGTTCGTTTGGGATCGT+AGG 0.519590 1_3:-74749615 None:intergenic
GAAATACCTAATGGTAGGGT+TGG 0.520361 1_3:+74749734 Msa0140510:CDS
TCACAGTCACCTAGCACAGC+AGG 0.521102 1_3:+74753140 Msa0140510:CDS
GCTCTCTGAGTGCCTAACTC+TGG 0.522190 1_3:-74753221 None:intergenic
TCAGCAGAAGAAACAGCGTC+AGG 0.524572 1_3:-74749887 None:intergenic
GACCATAACCCTGTCCTGGT+TGG 0.526303 1_3:-74752758 None:intergenic
ATAGGCCGCTTGGGAGGTAG+GGG 0.527994 1_3:-74753030 None:intergenic
GCCTTGCTGGGCAACAGTAG+TGG 0.528254 1_3:-74752961 None:intergenic
GCACCAGTGCAACCAGGGTA+TGG 0.529757 1_3:+74753242 Msa0140510:CDS
ATCTGCTTGTGATCCATAGT+TGG 0.529858 1_3:-74752919 None:intergenic
AGTTCGATGTCCGTGGCGGT+GGG 0.530955 1_3:-74749515 None:intergenic
TGCAGAATTTGGTGCAATTG+TGG 0.531451 1_3:+74753738 Msa0140510:three_prime_UTR
ATCCCGACCACCGTCTAGCT+GGG 0.531596 1_3:+74752431 Msa0140510:CDS
TATCCACCGGGTTGCTGAGG+AGG 0.532429 1_3:-74752564 None:intergenic
GGGAGTAATCCAACCCAAGA+AGG 0.532914 1_3:+74752888 Msa0140510:CDS
GAGCCCAGCTAGACGGTGGT+CGG 0.534258 1_3:-74752434 None:intergenic
GAGGGAGGAGCACCATAGCT+AGG 0.535314 1_3:-74753080 None:intergenic
GGTGTTCTTATTGGTAAAGG+AGG 0.535918 1_3:+74749755 Msa0140510:CDS
GCTGAAGCTGGGGCTTCTGG+CGG 0.536744 1_3:+74750855 Msa0140510:CDS
AACAAGCTGGTTATGGCTAT+GGG 0.538613 1_3:+74752475 Msa0140510:CDS
GCAGGAGGAGCCCAGCTAGA+CGG 0.538714 1_3:-74752441 None:intergenic
CACCAGCAGTCTACTCATGC+AGG 0.540059 1_3:+74752621 Msa0140510:CDS
TAAACAGGTGGATTTGCACT+TGG 0.540765 1_3:-74753110 None:intergenic
GGGTATGCTCAGCCAGAGTT+AGG 0.541597 1_3:+74753209 Msa0140510:CDS
TTATTAACTAGGCTGAAGCT+GGG 0.541792 1_3:+74750844 Msa0140510:intron
TCTGCTCCCAGTTATGGCAG+TGG 0.543356 1_3:+74752867 Msa0140510:CDS
ATGCCTCAGCCACCATATGC+AGG 0.544233 1_3:+74752537 Msa0140510:CDS
GCTGGGCAACAGTAGTGGGT+TGG 0.546458 1_3:-74752956 None:intergenic
CTGAGCATACCCGGAAGGCG+GGG 0.547333 1_3:-74753198 None:intergenic
GCTCGTCTTCTCAGCGTCAC+CGG 0.548114 1_3:+74749578 Msa0140510:CDS
TTTCTGTTGATGTATCACCT+GGG 0.548846 1_3:-74751299 None:intergenic
CTGATCCTAATTCTCAGACT+AGG 0.549418 1_3:+74749843 Msa0140510:CDS
TGAGGAGGATAGCCTGCATA+TGG 0.549695 1_3:-74752549 None:intergenic
CAGAGAGCACCAGTGCAACC+AGG 0.550434 1_3:+74753236 Msa0140510:CDS
TTGAGGAGTTCCTTGTTGGT+TGG 0.551933 1_3:-74752991 None:intergenic
AAGAGTATGCAAGCTTCTAC+CGG 0.552343 1_3:+74751078 Msa0140510:CDS
TAGCGATGGAGCAACTGCAC+AGG 0.553254 1_3:+74753376 Msa0140510:CDS
TAGCCTGCATATGGTGGCTG+AGG 0.553849 1_3:-74752540 None:intergenic
ATGCGCAACAACAACAATCT+GGG 0.554757 1_3:+74752802 Msa0140510:CDS
GGACCATACCCTGGTTGCAC+TGG 0.555058 1_3:-74753245 None:intergenic
GGCTATCCTCCTCAGCAACC+CGG 0.555442 1_3:+74752558 Msa0140510:CDS
AGTGGATTGGTCCCAGTTGG+TGG 0.555514 1_3:-74752589 None:intergenic
AGATTGAAATACCTAATGGT+AGG 0.556097 1_3:+74749729 Msa0140510:CDS
AAACGAACCAAGTCCGATAA+CGG 0.556846 1_3:+74749626 Msa0140510:CDS
TAGCCAGGCTGGCCACCTTG+AGG 0.557256 1_3:-74753284 None:intergenic
TTGGTTAATCAAATCCTCAC+TGG 0.558998 1_3:+74751372 Msa0140510:CDS
TCCTCTGGTTATAGCCAACC+AGG 0.559096 1_3:+74752744 Msa0140510:CDS
CAATCATACGGTGCTCCTCA+AGG 0.564374 1_3:+74753269 Msa0140510:CDS
CTCAGAAATTCAGGGAACTC+AGG 0.566464 1_3:+74752384 Msa0140510:CDS
GAGAACCTGAATTCGTGCTC+CGG 0.566604 1_3:-74751097 None:intergenic
GCTCCATCGCTAGCATACGC+TGG 0.567046 1_3:-74753365 None:intergenic
GCTACTGCATAACCTGGTTG+AGG 0.568505 1_3:-74753008 None:intergenic
TCTGGTTATGGACCTAGCTA+TGG 0.569183 1_3:+74753068 Msa0140510:CDS
CTGTATGCAGACCCATCAGC+TGG 0.570591 1_3:-74752705 None:intergenic
TAAGAATCAAACCCCGATTG+TGG 0.574402 1_3:-74749653 None:intergenic
GGGTATGGTCCGCAATCATA+CGG 0.574711 1_3:+74753257 Msa0140510:CDS
GGCCTTATAATTGGTAAAGG+AGG 0.574874 1_3:+74751045 Msa0140510:CDS
GTAGGAGAGTGGTGGAGCGC+CGG 0.574920 1_3:-74749597 None:intergenic
CCTTGCTGGGCAACAGTAGT+GGG 0.574987 1_3:-74752960 None:intergenic
AGAATCGTCTCAGAAATTCA+GGG 0.575702 1_3:+74752376 Msa0140510:intron
TGCAGTGGATTGGTCCCAGT+TGG 0.578827 1_3:-74752592 None:intergenic
GCTCCAGCGTATGCTAGCGA+TGG 0.580238 1_3:+74753362 Msa0140510:CDS
GGCATGTTATACTGCGGTGA+TGG 0.581623 1_3:-74752519 None:intergenic
GATTGAAATACCTAATGGTA+GGG 0.585821 1_3:+74749730 Msa0140510:CDS
CGGTGGATATTCCACCAACT+GGG 0.586403 1_3:+74752578 Msa0140510:CDS
TGTTGCACAGGAGCAGCAGG+AGG 0.586770 1_3:-74752456 None:intergenic
CAACAACAACAATCTGGGTA+TGG 0.587718 1_3:+74752807 Msa0140510:CDS
GGGCAACCTGGATCATACTC+TGG 0.588895 1_3:+74752495 Msa0140510:CDS
TGGCGGTGGCACTAGACGGA+TGG 0.589779 1_3:+74750872 Msa0140510:CDS
GAATATCCACCGGGTTGCTG+AGG 0.591522 1_3:-74752567 None:intergenic
CCCACTACTGTTGCCCAGCA+AGG 0.593544 1_3:+74752960 Msa0140510:CDS
TTACTCCCACTGCCATAACT+GGG 0.595665 1_3:-74752873 None:intergenic
ACCAAATTCTGCAAATGACA+TGG 0.598545 1_3:-74753728 None:intergenic
CGTTTGGGATCGTAGGAGAG+TGG 0.599323 1_3:-74749608 None:intergenic
ACGGATGGTTGCACAATCTG+GGG 0.600123 1_3:+74750887 Msa0140510:CDS
CACCTGCATGAGTAGACTGC+TGG 0.604282 1_3:-74752623 None:intergenic
AGTGAAAACACGGTGTGGGA+AGG 0.605750 1_3:-74749414 None:intergenic
CAGTTGGTGGAATATCCACC+GGG 0.607367 1_3:-74752576 None:intergenic
TAAGAACTATTTCCATATGA+CGG 0.608805 1_3:-74753320 None:intergenic
TCCTAATTCTCAGACTAGGA+TGG 0.609354 1_3:+74749847 Msa0140510:CDS
TGAGTAGACTGCTGGTGAGA+TGG 0.609532 1_3:-74752615 None:intergenic
GGTTATAGCCAACCAGGACA+GGG 0.609709 1_3:+74752750 Msa0140510:CDS
CCACCTTGCTGCGAGTATTG+CGG 0.611213 1_3:-74749686 None:intergenic
GGAGTAATCCAACCCAAGAA+GGG 0.613412 1_3:+74752889 Msa0140510:CDS
CATCAATGAAGTCCTTGCTG+AGG 0.616712 1_3:+74749916 Msa0140510:CDS
TTGGGATCGTAGGAGAGTGG+TGG 0.618282 1_3:-74749605 None:intergenic
AGAAAGTGAAAACACGGTGT+GGG 0.622964 1_3:-74749418 None:intergenic
GGAGGAGCCCAGCTAGACGG+TGG 0.623688 1_3:-74752438 None:intergenic
AGACTGTGGTTGACTTCCAT+AGG 0.624998 1_3:-74753048 None:intergenic
TAATCAAATCCTCACTGGTG+AGG 0.625790 1_3:+74751377 Msa0140510:CDS
CAACAAGGAACTCCTCAACC+AGG 0.626608 1_3:+74752996 Msa0140510:CDS
TCTGTTGATGTATCACCTGG+GGG 0.627155 1_3:-74751297 None:intergenic
GGTTATGGTCAAGAAAGCTA+TGG 0.629248 1_3:+74752771 Msa0140510:CDS
ACTTCCATAGGCCGCTTGGG+AGG 0.629551 1_3:-74753036 None:intergenic
TATGATTGCGGACCATACCC+TGG 0.630591 1_3:-74753254 None:intergenic
TCCTGGTTGGCTATAACCAG+AGG 0.630777 1_3:-74752745 None:intergenic
GGAGGATAGCCTGCATATGG+TGG 0.632205 1_3:-74752546 None:intergenic
TATAGGGTTTGTTTCAATGG+CGG 0.632326 1_3:+74749448 Msa0140510:exon
GTAGGGGCTACTGCATAACC+TGG 0.633003 1_3:-74753014 None:intergenic
TTGAAACAAACCCTATAGAG+AGG 0.634104 1_3:-74749442 None:intergenic
GACTTCGAGTTCGATGTCCG+TGG 0.636506 1_3:-74749522 None:intergenic
AAATTAAAGCCACATCCCGA+AGG 0.638216 1_3:-74753470 None:intergenic
GGCTATGCTACCAACCAACA+AGG 0.638622 1_3:+74752981 Msa0140510:CDS
TGAGGAGCACCGTATGATTG+CGG 0.639312 1_3:-74753266 None:intergenic
CAAACATATGATCAGCAACA+AGG 0.642194 1_3:+74752837 Msa0140510:CDS
TATTAACTAGGCTGAAGCTG+GGG 0.642830 1_3:+74750845 Msa0140510:intron
TCAGGTGGCTATACTCAGCA+AGG 0.643161 1_3:+74752402 Msa0140510:CDS
CGATGAACAACCCACCGCCA+CGG 0.645490 1_3:+74749505 Msa0140510:CDS
AAGAAAGTGAAAACACGGTG+TGG 0.646849 1_3:-74749419 None:intergenic
AAGCCGCAATACTCGCAGCA+AGG 0.647111 1_3:+74749683 Msa0140510:CDS
AGAGAGCACCAGTGCAACCA+GGG 0.650050 1_3:+74753237 Msa0140510:CDS
ACTGCACAGGCTGTTCCACA+GGG 0.651647 1_3:+74753389 Msa0140510:CDS
GATGTTGCTATCAAAATGGG+AGG 0.651780 1_3:-74753497 None:intergenic
GGTTGGCTATAACCAGAGGA+AGG 0.652858 1_3:-74752741 None:intergenic
TGGCTATAACCAGAGGAAGG+AGG 0.658440 1_3:-74752738 None:intergenic
AGAAATTCAGGGAACTCAGG+TGG 0.658761 1_3:+74752387 Msa0140510:CDS
GGTGTTACTAAAATGAACAC+AGG 0.662051 1_3:+74753775 Msa0140510:three_prime_UTR
TCTGGCTGAGCATACCCGGA+AGG 0.665619 1_3:-74753203 None:intergenic
CGGATGGTTGCACAATCTGG+GGG 0.666739 1_3:+74750888 Msa0140510:CDS
CCAGCAACAGCAAAATCCTG+GGG 0.670269 1_3:+74752671 Msa0140510:CDS
CAGTCACCTAGCACAGCAGG+AGG 0.674325 1_3:+74753143 Msa0140510:CDS
AGAGGAAGAAAGTGAAAACA+CGG 0.674928 1_3:-74749424 None:intergenic
TTCGAGTTCGATGTCCGTGG+CGG 0.677834 1_3:-74749519 None:intergenic
CAGCAGTCTACTCATGCAGG+TGG 0.682332 1_3:+74752624 Msa0140510:CDS
CTGCTGGTGAGATGGTGCAG+TGG 0.682356 1_3:-74752607 None:intergenic
ATAACGGTGCTCCACAATCG+GGG 0.686584 1_3:+74749642 Msa0140510:CDS
ACTTTAGCAACACCGCCCTG+TGG 0.690074 1_3:-74753404 None:intergenic
CCGCAATACTCGCAGCAAGG+TGG 0.697265 1_3:+74749686 Msa0140510:CDS
TGTGATTGACCATAAACAGG+TGG 0.715400 1_3:-74753122 None:intergenic
TATCCTCCTCAGCAACCCGG+TGG 0.720805 1_3:+74752561 Msa0140510:CDS
CTAGGTCCATAACCAGACTG+TGG 0.724556 1_3:-74753062 None:intergenic
GCACAGGCTGTTCCACAGGG+CGG 0.725045 1_3:+74753392 Msa0140510:CDS
GGTGACGCTGAGAAGACGAG+CGG 0.728767 1_3:-74749576 None:intergenic
GAACTATTTCCATATGACGG+CGG 0.728848 1_3:-74753317 None:intergenic
AGTAGCCCCTACCTCCCAAG+CGG 0.730653 1_3:+74753025 Msa0140510:CDS
CAGCAACAGCAAAATCCTGG+GGG 0.736266 1_3:+74752672 Msa0140510:CDS
TCATACGGTGCTCCTCAAGG+TGG 0.736772 1_3:+74753272 Msa0140510:CDS
GGCTGAGGCATGTTATACTG+CGG 0.750903 1_3:-74752525 None:intergenic
GATAACATACCTCACCAGTG+AGG 0.751081 1_3:-74751386 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTAAACTTAAAAAAGATT+TGG - chr1_3:74751460-74751479 None:intergenic 10.0%
!!! CTTTTTTAAGTTTAAAATTA+TGG + chr1_3:74751463-74751482 Msa0140510:intron 10.0%
!!! AAATTATGACTAATTTTTAT+TGG + chr1_3:74752221-74752240 Msa0140510:intron 10.0%
!!! TTTTTTTATACTCTTGTTTA+CGG + chr1_3:74749942-74749961 Msa0140510:intron 15.0%
!!! AAAAGGTCAATAATTTTATA+AGG - chr1_3:74751545-74751564 None:intergenic 15.0%
!!! AAAATGAATAACAATTTTGT+AGG - chr1_3:74751578-74751597 None:intergenic 15.0%
!! AAATTCACTTTCAATTATAA+TGG + chr1_3:74752002-74752021 Msa0140510:intron 15.0%
!!! TCTTATATTTTCAAAAACAT+AGG - chr1_3:74753815-74753834 None:intergenic 15.0%
!! TAATCAATGATATTTCACTA+AGG - chr1_3:74750137-74750156 None:intergenic 20.0%
!!! TGAAATACATTTTTACTAAC+AGG - chr1_3:74750630-74750649 None:intergenic 20.0%
!! TATATTATAGTTACAGAATC+AGG - chr1_3:74750738-74750757 None:intergenic 20.0%
!!! CTAATATCATCAATTTTTTC+AGG + chr1_3:74751257-74751276 Msa0140510:intron 20.0%
!! AAAGAACATTAAAAATCGAT+GGG + chr1_3:74751319-74751338 Msa0140510:CDS 20.0%
!!! ACACATTTTTTTGTTTTATC+TGG + chr1_3:74751410-74751429 Msa0140510:intron 20.0%
!! TTTAATCGTAAAACTAAACA+TGG - chr1_3:74751497-74751516 None:intergenic 20.0%
!!! TTAAAGTATTTCTTATCGTT+GGG + chr1_3:74751895-74751914 Msa0140510:intron 20.0%
!! ATTGAAAGTGAATTTAACAT+AGG - chr1_3:74751997-74752016 None:intergenic 20.0%
!!! TTTTATTTCATAGTTTGTTG+AGG + chr1_3:74752049-74752068 Msa0140510:intron 20.0%
!!! CTTCGTATATTTTTATGTTT+TGG + chr1_3:74752302-74752321 Msa0140510:intron 20.0%
!!! AGATGAAAACAAACTTATTT+TGG + chr1_3:74753540-74753559 Msa0140510:three_prime_UTR 20.0%
!! ATTGTGGAATATATGTTAAA+AGG + chr1_3:74753754-74753773 Msa0140510:three_prime_UTR 20.0%
! AAGAAGATTGAAATACCTAA+TGG + chr1_3:74749725-74749744 Msa0140510:CDS 25.0%
! ATAAAAAAAAAACCTCAGCA+AGG - chr1_3:74749931-74749950 None:intergenic 25.0%
! GTGATTTCAAAACATGAATT+GGG - chr1_3:74750103-74750122 None:intergenic 25.0%
! TACTCAAATGATGTTCAAAT+TGG + chr1_3:74750248-74750267 Msa0140510:intron 25.0%
! TAAATATGCTCAAATGATGT+TGG + chr1_3:74750772-74750791 Msa0140510:intron 25.0%
!!! ATACGTGTTGTTTATTAACT+AGG + chr1_3:74750833-74750852 Msa0140510:intron 25.0%
!!! TGTTTTGTTTATTCTCGTTT+GGG + chr1_3:74750990-74751009 Msa0140510:intron 25.0%
! GAAAGAACATTAAAAATCGA+TGG + chr1_3:74751318-74751337 Msa0140510:CDS 25.0%
!!! TTTATCTGGCTTATCATTTT+TGG + chr1_3:74751424-74751443 Msa0140510:intron 25.0%
! TCAACAAGTCAAAATTCAAA+AGG - chr1_3:74751727-74751746 None:intergenic 25.0%
!!! CAAAGTGTTGTCTAATTTTA+TGG - chr1_3:74751763-74751782 None:intergenic 25.0%
! TAAAATTAGACAACACTTTG+AGG + chr1_3:74751763-74751782 Msa0140510:intron 25.0%
!! CTTAAAGTATTTCTTATCGT+TGG + chr1_3:74751894-74751913 Msa0140510:intron 25.0%
! AGAATTGTTTCAATGTACTT+GGG + chr1_3:74752106-74752125 Msa0140510:intron 25.0%
!! CTAATTTTTATTGGCATCAA+CGG + chr1_3:74752230-74752249 Msa0140510:intron 25.0%
!! TAATTTTTATTGGCATCAAC+GGG + chr1_3:74752231-74752250 Msa0140510:intron 25.0%
!!! ATTTTTATGTTTTGGTACGT+TGG + chr1_3:74752310-74752329 Msa0140510:intron 25.0%
!!! TTTTTATGTTTTGGTACGTT+GGG + chr1_3:74752311-74752330 Msa0140510:intron 25.0%
! TAAGAACTATTTCCATATGA+CGG - chr1_3:74753323-74753342 None:intergenic 25.0%
! TCATATGGAAATAGTTCTTA+TGG + chr1_3:74753323-74753342 Msa0140510:CDS 25.0%
!! TTTGGTACTTGAATATTTTC+CGG + chr1_3:74753558-74753577 Msa0140510:three_prime_UTR 25.0%
! TTACATTTATCTAAGCTGTA+TGG + chr1_3:74753645-74753664 Msa0140510:three_prime_UTR 25.0%
!!! ATATTTTTACCTGAAATGAG+CGG + chr1_3:74753698-74753717 Msa0140510:three_prime_UTR 25.0%
AGATTGAAATACCTAATGGT+AGG + chr1_3:74749729-74749748 Msa0140510:CDS 30.0%
GATTGAAATACCTAATGGTA+GGG + chr1_3:74749730-74749749 Msa0140510:CDS 30.0%
TACTGTAATTCTTACTAGTC+AGG + chr1_3:74749997-74750016 Msa0140510:intron 30.0%
ACTGTAATTCTTACTAGTCA+GGG + chr1_3:74749998-74750017 Msa0140510:intron 30.0%
GGTGATTTCAAAACATGAAT+TGG - chr1_3:74750104-74750123 None:intergenic 30.0%
TTTCACTAAGGTAACAGTTA+CGG - chr1_3:74750125-74750144 None:intergenic 30.0%
! CTGATTTGATAACTGTTGTA+TGG + chr1_3:74750170-74750189 Msa0140510:intron 30.0%
CTCAAATGATGTTTCAATGA+CGG + chr1_3:74750346-74750365 Msa0140510:intron 30.0%
TCTAATCTTGCACAATTTCA+TGG + chr1_3:74750464-74750483 Msa0140510:intron 30.0%
TTGGTGAAACATTCACTAAT+AGG + chr1_3:74750519-74750538 Msa0140510:intron 30.0%
GATGCAAATACCAAACAATA+AGG + chr1_3:74750923-74750942 Msa0140510:CDS 30.0%
AAATACCAAACAATAAGGTG+TGG + chr1_3:74750928-74750947 Msa0140510:intron 30.0%
AATACCAAACAATAAGGTGT+GGG + chr1_3:74750929-74750948 Msa0140510:intron 30.0%
!!! GTGTTTTGTTTATTCTCGTT+TGG + chr1_3:74750989-74751008 Msa0140510:intron 30.0%
!! TTGCTGATTCAATTTGATCA+GGG - chr1_3:74751347-74751366 None:intergenic 30.0%
!! TTTGCTGATTCAATTTGATC+AGG - chr1_3:74751348-74751367 None:intergenic 30.0%
AATTGAATCAGCAAAGCAAT+TGG + chr1_3:74751353-74751372 Msa0140510:CDS 30.0%
TTGTAGGAACTAAACTCAAA+AGG - chr1_3:74751562-74751581 None:intergenic 30.0%
!!! GAGCACCTTATTTTTACAAA+AGG - chr1_3:74751611-74751630 None:intergenic 30.0%
TGAGTTATCATGGTTTCATT+TGG - chr1_3:74751664-74751683 None:intergenic 30.0%
TTGATAAATCATAGCTACTG+CGG - chr1_3:74751696-74751715 None:intergenic 30.0%
ATTGTCTCTATTTATGTTCC+TGG + chr1_3:74751796-74751815 Msa0140510:intron 30.0%
AATCGACAGAAATACACAAA+TGG - chr1_3:74751857-74751876 None:intergenic 30.0%
TCATATGCTCAACTTTCATT+TGG + chr1_3:74751918-74751937 Msa0140510:intron 30.0%
!!! ATTTGGCATAGTTTTATCCT+TGG + chr1_3:74751935-74751954 Msa0140510:intron 30.0%
!!! TTTGGCATAGTTTTATCCTT+GGG + chr1_3:74751936-74751955 Msa0140510:intron 30.0%
GAGAATTGTTTCAATGTACT+TGG + chr1_3:74752105-74752124 Msa0140510:intron 30.0%
GAATTGTTTCAATGTACTTG+GGG + chr1_3:74752107-74752126 Msa0140510:intron 30.0%
TTACTCACTAGAGCAAATAT+GGG - chr1_3:74752170-74752189 None:intergenic 30.0%
TTTACTCACTAGAGCAAATA+TGG - chr1_3:74752171-74752190 None:intergenic 30.0%
AATAGATGTACACACAAAAC+GGG - chr1_3:74752281-74752300 None:intergenic 30.0%
CAATAGATGTACACACAAAA+CGG - chr1_3:74752282-74752301 None:intergenic 30.0%
!!! CTAGTTCGCTTTTTAATTTG+TGG + chr1_3:74752334-74752353 Msa0140510:intron 30.0%
CAAGAGAAAAATCAACTCTT+GGG - chr1_3:74753434-74753453 None:intergenic 30.0%
ACAAGAGAAAAATCAACTCT+TGG - chr1_3:74753435-74753454 None:intergenic 30.0%
!! AGTTGATTTTTCTCTTGTGA+TGG + chr1_3:74753437-74753456 Msa0140510:exon 30.0%
TTCTCTTGTGATGGTTATTA+TGG + chr1_3:74753446-74753465 Msa0140510:three_prime_UTR 30.0%
ATCGATGTTGCTATCAAAAT+GGG - chr1_3:74753503-74753522 None:intergenic 30.0%
TATCGATGTTGCTATCAAAA+TGG - chr1_3:74753504-74753523 None:intergenic 30.0%
!! TTTTGATAGCAACATCGATA+TGG + chr1_3:74753504-74753523 Msa0140510:three_prime_UTR 30.0%
AGAGGAAGAAAGTGAAAACA+CGG - chr1_3:74749427-74749446 None:intergenic 35.0%
TTCACTTTCTTCCTCTCTAT+AGG + chr1_3:74749431-74749450 Msa0140510:five_prime_UTR 35.0%
TCACTTTCTTCCTCTCTATA+GGG + chr1_3:74749432-74749451 Msa0140510:five_prime_UTR 35.0%
TTGAAACAAACCCTATAGAG+AGG - chr1_3:74749445-74749464 None:intergenic 35.0%
! CTCTATAGGGTTTGTTTCAA+TGG + chr1_3:74749445-74749464 Msa0140510:exon 35.0%
! TATAGGGTTTGTTTCAATGG+CGG + chr1_3:74749448-74749467 Msa0140510:exon 35.0%
! TTCATCGTACTTGCGTTTTA+GGG - chr1_3:74749492-74749511 None:intergenic 35.0%
! GTTGGTGTTCTTATTGGTAA+AGG + chr1_3:74749752-74749771 Msa0140510:CDS 35.0%
AAGTATCTTCAGATGCAATC+TGG + chr1_3:74749788-74749807 Msa0140510:CDS 35.0%
! GATTCAAGTTACTCGTGATA+TGG + chr1_3:74749817-74749836 Msa0140510:CDS 35.0%
ACTAGGATGGTTGAACTTAT+GGG + chr1_3:74749860-74749879 Msa0140510:CDS 35.0%
CTGTTGTATGGAGTTTCAAT+AGG + chr1_3:74750182-74750201 Msa0140510:intron 35.0%
CAGTCAGATACAACAAAATC+AGG - chr1_3:74750285-74750304 None:intergenic 35.0%
TGATGTTTCAATGACGGTAA+AGG + chr1_3:74750352-74750371 Msa0140510:intron 35.0%
ATGACTGTAACTTTACCTCT+TGG + chr1_3:74750500-74750519 Msa0140510:intron 35.0%
TTAGTGAATGTTTCACCAAG+AGG - chr1_3:74750518-74750537 None:intergenic 35.0%
AAAACACCTCTTATCAGTGA+TGG - chr1_3:74750713-74750732 None:intergenic 35.0%
TGCTCAAATGATGTTGGAAT+TGG + chr1_3:74750778-74750797 Msa0140510:intron 35.0%
TTTATTAACTAGGCTGAAGC+TGG + chr1_3:74750843-74750862 Msa0140510:intron 35.0%
TTATTAACTAGGCTGAAGCT+GGG + chr1_3:74750844-74750863 Msa0140510:intron 35.0%
ATACCAAACAATAAGGTGTG+GGG + chr1_3:74750930-74750949 Msa0140510:intron 35.0%
GATGAAATATATCCAGTTGC+AGG + chr1_3:74750952-74750971 Msa0140510:intron 35.0%
GGTTTCTTGTGTACATCTTT+AGG + chr1_3:74751020-74751039 Msa0140510:intron 35.0%
TCTTGTGTACATCTTTAGGT+TGG + chr1_3:74751024-74751043 Msa0140510:intron 35.0%
!! CTTTAGGTTGGCCTTATAAT+TGG + chr1_3:74751036-74751055 Msa0140510:intron 35.0%
!! GTTGGCCTTATAATTGGTAA+AGG + chr1_3:74751042-74751061 Msa0140510:CDS 35.0%
CTCCTCCTTTACCAATTATA+AGG - chr1_3:74751050-74751069 None:intergenic 35.0%
AATATGAAATCCATGTCGTC+GGG - chr1_3:74751222-74751241 None:intergenic 35.0%
GAATATGAAATCCATGTCGT+CGG - chr1_3:74751223-74751242 None:intergenic 35.0%
TTTCTGTTGATGTATCACCT+GGG - chr1_3:74751302-74751321 None:intergenic 35.0%
!! TGCTGATTCAATTTGATCAG+GGG - chr1_3:74751346-74751365 None:intergenic 35.0%
TTGGTTAATCAAATCCTCAC+TGG + chr1_3:74751372-74751391 Msa0140510:CDS 35.0%
!! ATCTGGCTTATCATTTTTGG+AGG + chr1_3:74751427-74751446 Msa0140510:intron 35.0%
!! TCTGGCTTATCATTTTTGGA+GGG + chr1_3:74751428-74751447 Msa0140510:intron 35.0%
! CTGCGCCTTTTGTAAAAATA+AGG + chr1_3:74751603-74751622 Msa0140510:intron 35.0%
!! GTGCTCATATTTTTACAGTG+TGG + chr1_3:74751625-74751644 Msa0140510:intron 35.0%
GAAACCATGATAACTCAAAC+TGG + chr1_3:74751667-74751686 Msa0140510:intron 35.0%
TCAAACAAAATCTAACAGCC+AGG - chr1_3:74751817-74751836 None:intergenic 35.0%
TGATGTACGGTCTGTATAAT+TGG + chr1_3:74752135-74752154 Msa0140510:intron 35.0%
AGAATCGTCTCAGAAATTCA+GGG + chr1_3:74752376-74752395 Msa0140510:intron 35.0%
TGTTGCTGATCATATGTTTG+TGG - chr1_3:74752837-74752856 None:intergenic 35.0%
CAAACATATGATCAGCAACA+AGG + chr1_3:74752837-74752856 Msa0140510:CDS 35.0%
TATGATCAGCAACAAGGTTA+TGG + chr1_3:74752843-74752862 Msa0140510:CDS 35.0%
TGATGGTTATTATGGTCCTT+CGG + chr1_3:74753454-74753473 Msa0140510:three_prime_UTR 35.0%
! GTACTTGAATATTTTCCGGA+AGG + chr1_3:74753562-74753581 Msa0140510:three_prime_UTR 35.0%
! TATTTTCCGGAAGGTTGAAT+AGG + chr1_3:74753571-74753590 Msa0140510:three_prime_UTR 35.0%
! GAAAAATGCTAGTCTAACAC+TGG - chr1_3:74753618-74753637 None:intergenic 35.0%
! TCCATGTCATTTGCAGAATT+TGG + chr1_3:74753727-74753746 Msa0140510:three_prime_UTR 35.0%
ACCAAATTCTGCAAATGACA+TGG - chr1_3:74753731-74753750 None:intergenic 35.0%
!! GGTGTTACTAAAATGAACAC+AGG + chr1_3:74753775-74753794 Msa0140510:three_prime_UTR 35.0%
AGAAAGTGAAAACACGGTGT+GGG - chr1_3:74749421-74749440 None:intergenic 40.0%
AAGAAAGTGAAAACACGGTG+TGG - chr1_3:74749422-74749441 None:intergenic 40.0%
! GTTCATCGTACTTGCGTTTT+AGG - chr1_3:74749493-74749512 None:intergenic 40.0%
AACTTCTTGAGCTCGTTGTT+TGG - chr1_3:74749555-74749574 None:intergenic 40.0%
! TTATCGGACTTGGTTCGTTT+GGG - chr1_3:74749626-74749645 None:intergenic 40.0%
AAACGAACCAAGTCCGATAA+CGG + chr1_3:74749626-74749645 Msa0140510:CDS 40.0%
TAAGAATCAAACCCCGATTG+TGG - chr1_3:74749656-74749675 None:intergenic 40.0%
GAAATACCTAATGGTAGGGT+TGG + chr1_3:74749734-74749753 Msa0140510:CDS 40.0%
GGTGTTCTTATTGGTAAAGG+AGG + chr1_3:74749755-74749774 Msa0140510:CDS 40.0%
CTGATCCTAATTCTCAGACT+AGG + chr1_3:74749843-74749862 Msa0140510:CDS 40.0%
TCCTAATTCTCAGACTAGGA+TGG + chr1_3:74749847-74749866 Msa0140510:CDS 40.0%
ACCATCCTAGTCTGAGAATT+AGG - chr1_3:74749851-74749870 None:intergenic 40.0%
GACTAGGATGGTTGAACTTA+TGG + chr1_3:74749859-74749878 Msa0140510:CDS 40.0%
TATTAACTAGGCTGAAGCTG+GGG + chr1_3:74750845-74750864 Msa0140510:intron 40.0%
!! TATTCTCGTTTGGGTTGATG+TGG + chr1_3:74750999-74751018 Msa0140510:intron 40.0%
! GGCCTTATAATTGGTAAAGG+AGG + chr1_3:74751045-74751064 Msa0140510:CDS 40.0%
! AAGAGTATGCAAGCTTCTAC+CGG + chr1_3:74751078-74751097 Msa0140510:CDS 40.0%
TTCTGTTGATGTATCACCTG+GGG - chr1_3:74751301-74751320 None:intergenic 40.0%
CTTTCTGTTGATGTATCACC+TGG - chr1_3:74751303-74751322 None:intergenic 40.0%
TAATCAAATCCTCACTGGTG+AGG + chr1_3:74751377-74751396 Msa0140510:CDS 40.0%
! GTCTCCAGTTTGAGTTATCA+TGG - chr1_3:74751674-74751693 None:intergenic 40.0%
CAGAATCGTCTCAGAAATTC+AGG + chr1_3:74752375-74752394 Msa0140510:intron 40.0%
AACAAGCTGGTTATGGCTAT+GGG + chr1_3:74752475-74752494 Msa0140510:CDS 40.0%
GGTTATGGTCAAGAAAGCTA+TGG + chr1_3:74752771-74752790 Msa0140510:CDS 40.0%
AATGCGCAACAACAACAATC+TGG + chr1_3:74752801-74752820 Msa0140510:CDS 40.0%
ATGCGCAACAACAACAATCT+GGG + chr1_3:74752802-74752821 Msa0140510:CDS 40.0%
CAACAACAACAATCTGGGTA+TGG + chr1_3:74752807-74752826 Msa0140510:CDS 40.0%
ATCTGCTTGTGATCCATAGT+TGG - chr1_3:74752922-74752941 None:intergenic 40.0%
!! TTTGCACTTGGCTTTTGAGA+GGG - chr1_3:74753101-74753120 None:intergenic 40.0%
!! ATTTGCACTTGGCTTTTGAG+AGG - chr1_3:74753102-74753121 None:intergenic 40.0%
! TAAACAGGTGGATTTGCACT+TGG - chr1_3:74753113-74753132 None:intergenic 40.0%
AGTGCAAATCCACCTGTTTA+TGG + chr1_3:74753113-74753132 Msa0140510:CDS 40.0%
TGTGATTGACCATAAACAGG+TGG - chr1_3:74753125-74753144 None:intergenic 40.0%
GACTGTGATTGACCATAAAC+AGG - chr1_3:74753128-74753147 None:intergenic 40.0%
GAACTATTTCCATATGACGG+CGG - chr1_3:74753320-74753339 None:intergenic 40.0%
GGAAATAGTTCTTATGGTGC+TGG + chr1_3:74753329-74753348 Msa0140510:CDS 40.0%
!! TTATGGTGCTGGTTATGTTC+AGG + chr1_3:74753340-74753359 Msa0140510:CDS 40.0%
GATGGTTATTATGGTCCTTC+GGG + chr1_3:74753455-74753474 Msa0140510:three_prime_UTR 40.0%
AAATTAAAGCCACATCCCGA+AGG - chr1_3:74753473-74753492 None:intergenic 40.0%
GATGTTGCTATCAAAATGGG+AGG - chr1_3:74753500-74753519 None:intergenic 40.0%
TTAGCTCCTATTCAACCTTC+CGG - chr1_3:74753580-74753599 None:intergenic 40.0%
!! TGCAGAATTTGGTGCAATTG+TGG + chr1_3:74753738-74753757 Msa0140510:three_prime_UTR 40.0%
GTGTGGGAAGGAATTGGATT+AGG - chr1_3:74749405-74749424 None:intergenic 45.0%
! GTTATCGGACTTGGTTCGTT+TGG - chr1_3:74749627-74749646 None:intergenic 45.0%
AGAACACCAACCCTACCATT+AGG - chr1_3:74749743-74749762 None:intergenic 45.0%
!! GGTAGGGTTGGTGTTCTTAT+TGG + chr1_3:74749746-74749765 Msa0140510:CDS 45.0%
CATCAATGAAGTCCTTGCTG+AGG + chr1_3:74749916-74749935 Msa0140510:CDS 45.0%
GTGCAACCATCACTGATAAG+AGG + chr1_3:74750704-74750723 Msa0140510:intron 45.0%
CATCCCCACACCTTATTGTT+TGG - chr1_3:74750936-74750955 None:intergenic 45.0%
CCAAAAAACATGCCTGCAAC+TGG - chr1_3:74750967-74750986 None:intergenic 45.0%
!!! CCAGTTGCAGGCATGTTTTT+TGG + chr1_3:74750964-74750983 Msa0140510:intron 45.0%
TCTGTTGATGTATCACCTGG+GGG - chr1_3:74751300-74751319 None:intergenic 45.0%
GATAACATACCTCACCAGTG+AGG - chr1_3:74751389-74751408 None:intergenic 45.0%
TTGAGGCTGACCTGTTAGAT+TGG + chr1_3:74752066-74752085 Msa0140510:intron 45.0%
TGAGGCTGACCTGTTAGATT+GGG + chr1_3:74752067-74752086 Msa0140510:intron 45.0%
! TGACCTGTTAGATTGGGTTG+AGG + chr1_3:74752073-74752092 Msa0140510:intron 45.0%
!! GACCTGTTAGATTGGGTTGA+GGG + chr1_3:74752074-74752093 Msa0140510:intron 45.0%
TTCCCTCAACCCAATCTAAC+AGG - chr1_3:74752079-74752098 None:intergenic 45.0%
!! TGTTAGATTGGGTTGAGGGA+AGG + chr1_3:74752078-74752097 Msa0140510:intron 45.0%
ACTTGGGGCTTAGTGATGTA+CGG + chr1_3:74752122-74752141 Msa0140510:intron 45.0%
TATTGGCATCAACGGGAATG+AGG + chr1_3:74752238-74752257 Msa0140510:intron 45.0%
CTCAGAAATTCAGGGAACTC+AGG + chr1_3:74752384-74752403 Msa0140510:CDS 45.0%
AGAAATTCAGGGAACTCAGG+TGG + chr1_3:74752387-74752406 Msa0140510:CDS 45.0%
CAACAAGCTGGTTATGGCTA+TGG + chr1_3:74752474-74752493 Msa0140510:CDS 45.0%
TTACTCCCACTGCCATAACT+GGG - chr1_3:74752876-74752895 None:intergenic 45.0%
ATTACTCCCACTGCCATAAC+TGG - chr1_3:74752877-74752896 None:intergenic 45.0%
GGAGTAATCCAACCCAAGAA+GGG + chr1_3:74752889-74752908 Msa0140510:CDS 45.0%
!! AGTAGTGGGTTGGGAAGTTT+GGG - chr1_3:74752949-74752968 None:intergenic 45.0%
TTGAGGAGTTCCTTGTTGGT+TGG - chr1_3:74752994-74753013 None:intergenic 45.0%
! AGACTGTGGTTGACTTCCAT+AGG - chr1_3:74753051-74753070 None:intergenic 45.0%
TATGGAAGTCAACCACAGTC+TGG + chr1_3:74753050-74753069 Msa0140510:CDS 45.0%
AGTCAACCACAGTCTGGTTA+TGG + chr1_3:74753056-74753075 Msa0140510:CDS 45.0%
TCTGGTTATGGACCTAGCTA+TGG + chr1_3:74753068-74753087 Msa0140510:CDS 45.0%
TATTATGGTCCTTCGGGATG+TGG + chr1_3:74753461-74753480 Msa0140510:three_prime_UTR 45.0%
!!! TTTTTTAAGTTTAAAATTAT+GGG + chr1_3:74751464-74751483 Msa0140510:intron 5.0%
AACACGGTGTGGGAAGGAAT+TGG - chr1_3:74749411-74749430 None:intergenic 50.0%
AGTGAAAACACGGTGTGGGA+AGG - chr1_3:74749417-74749436 None:intergenic 50.0%
! CTTGGTTCGTTTGGGATCGT+AGG - chr1_3:74749618-74749637 None:intergenic 50.0%
!! CGATTGTGGAGCACCGTTAT+CGG - chr1_3:74749642-74749661 None:intergenic 50.0%
! CGATAACGGTGCTCCACAAT+CGG + chr1_3:74749640-74749659 Msa0140510:CDS 50.0%
! GATAACGGTGCTCCACAATC+GGG + chr1_3:74749641-74749660 Msa0140510:CDS 50.0%
ATAACGGTGCTCCACAATCG+GGG + chr1_3:74749642-74749661 Msa0140510:CDS 50.0%
TCGCAGCAAGGTGGTAGTTA+TGG + chr1_3:74749695-74749714 Msa0140510:CDS 50.0%
TCAGCAGAAGAAACAGCGTC+AGG - chr1_3:74749890-74749909 None:intergenic 50.0%
AGACGGATGGTTGCACAATC+TGG + chr1_3:74750885-74750904 Msa0140510:CDS 50.0%
GACGGATGGTTGCACAATCT+GGG + chr1_3:74750886-74750905 Msa0140510:CDS 50.0%
ACGGATGGTTGCACAATCTG+GGG + chr1_3:74750887-74750906 Msa0140510:CDS 50.0%
TTCTACCGGAGCACGAATTC+AGG + chr1_3:74751092-74751111 Msa0140510:CDS 50.0%
GAGAACCTGAATTCGTGCTC+CGG - chr1_3:74751100-74751119 None:intergenic 50.0%
TCAGGTGGCTATACTCAGCA+AGG + chr1_3:74752402-74752421 Msa0140510:CDS 50.0%
!! CCATAACCAGCTTGTTGCAC+AGG - chr1_3:74752471-74752490 None:intergenic 50.0%
CCTGTGCAACAAGCTGGTTA+TGG + chr1_3:74752468-74752487 Msa0140510:CDS 50.0%
GATGGACCAGAGTATGATCC+AGG - chr1_3:74752504-74752523 None:intergenic 50.0%
GGCATGTTATACTGCGGTGA+TGG - chr1_3:74752522-74752541 None:intergenic 50.0%
GGCTGAGGCATGTTATACTG+CGG - chr1_3:74752528-74752547 None:intergenic 50.0%
TGAGGAGGATAGCCTGCATA+TGG - chr1_3:74752552-74752571 None:intergenic 50.0%
!! CAGTTGGTGGAATATCCACC+GGG - chr1_3:74752579-74752598 None:intergenic 50.0%
!! CCAGTTGGTGGAATATCCAC+CGG - chr1_3:74752580-74752599 None:intergenic 50.0%
CGGTGGATATTCCACCAACT+GGG + chr1_3:74752578-74752597 Msa0140510:CDS 50.0%
TGAGTAGACTGCTGGTGAGA+TGG - chr1_3:74752618-74752637 None:intergenic 50.0%
!! TTTGCTGTTGCTGGGGTTGT+TGG - chr1_3:74752665-74752684 None:intergenic 50.0%
!!! CCAGGATTTTGCTGTTGCTG+GGG - chr1_3:74752672-74752691 None:intergenic 50.0%
!!! CCCAGGATTTTGCTGTTGCT+GGG - chr1_3:74752673-74752692 None:intergenic 50.0%
CCCAGCAACAGCAAAATCCT+GGG + chr1_3:74752670-74752689 Msa0140510:CDS 50.0%
CCAGCAACAGCAAAATCCTG+GGG + chr1_3:74752671-74752690 Msa0140510:CDS 50.0%
CAGCAACAGCAAAATCCTGG+GGG + chr1_3:74752672-74752691 Msa0140510:CDS 50.0%
TACAGTCAACCTCCTTCCTC+TGG + chr1_3:74752729-74752748 Msa0140510:CDS 50.0%
TGGCTATAACCAGAGGAAGG+AGG - chr1_3:74752741-74752760 None:intergenic 50.0%
! GGTTGGCTATAACCAGAGGA+AGG - chr1_3:74752744-74752763 None:intergenic 50.0%
TCCTCTGGTTATAGCCAACC+AGG + chr1_3:74752744-74752763 Msa0140510:CDS 50.0%
! TCCTGGTTGGCTATAACCAG+AGG - chr1_3:74752748-74752767 None:intergenic 50.0%
TGGTTATAGCCAACCAGGAC+AGG + chr1_3:74752749-74752768 Msa0140510:CDS 50.0%
GGTTATAGCCAACCAGGACA+GGG + chr1_3:74752750-74752769 Msa0140510:CDS 50.0%
TCTTGACCATAACCCTGTCC+TGG - chr1_3:74752765-74752784 None:intergenic 50.0%
! TATGGCTCTGCTCCCAGTTA+TGG + chr1_3:74752861-74752880 Msa0140510:CDS 50.0%
GGGAGTAATCCAACCCAAGA+AGG + chr1_3:74752888-74752907 Msa0140510:CDS 50.0%
!! TAGTGGGTTGGGAAGTTTGG+GGG - chr1_3:74752947-74752966 None:intergenic 50.0%
!! GTAGTGGGTTGGGAAGTTTG+GGG - chr1_3:74752948-74752967 None:intergenic 50.0%
!! CAGTAGTGGGTTGGGAAGTT+TGG - chr1_3:74752950-74752969 None:intergenic 50.0%
!! GTTGGTAGCATAGCCTTGCT+GGG - chr1_3:74752976-74752995 None:intergenic 50.0%
GGCTATGCTACCAACCAACA+AGG + chr1_3:74752981-74753000 Msa0140510:CDS 50.0%
CTGGTTGAGGAGTTCCTTGT+TGG - chr1_3:74752998-74753017 None:intergenic 50.0%
CAACAAGGAACTCCTCAACC+AGG + chr1_3:74752996-74753015 Msa0140510:CDS 50.0%
GCTACTGCATAACCTGGTTG+AGG - chr1_3:74753011-74753030 None:intergenic 50.0%
TTGACTTCCATAGGCCGCTT+GGG - chr1_3:74753042-74753061 None:intergenic 50.0%
CTAGGTCCATAACCAGACTG+TGG - chr1_3:74753065-74753084 None:intergenic 50.0%
TAACTCTGGCTGAGCATACC+CGG - chr1_3:74753210-74753229 None:intergenic 50.0%
TATGATTGCGGACCATACCC+TGG - chr1_3:74753257-74753276 None:intergenic 50.0%
GGGTATGGTCCGCAATCATA+CGG + chr1_3:74753257-74753276 Msa0140510:CDS 50.0%
!! TGAGGAGCACCGTATGATTG+CGG - chr1_3:74753269-74753288 None:intergenic 50.0%
CAATCATACGGTGCTCCTCA+AGG + chr1_3:74753269-74753288 Msa0140510:CDS 50.0%
! TTCGAGTTCGATGTCCGTGG+CGG - chr1_3:74749522-74749541 None:intergenic 55.0%
! GACTTCGAGTTCGATGTCCG+TGG - chr1_3:74749525-74749544 None:intergenic 55.0%
TTGGGATCGTAGGAGAGTGG+TGG - chr1_3:74749608-74749627 None:intergenic 55.0%
! CGTTTGGGATCGTAGGAGAG+TGG - chr1_3:74749611-74749630 None:intergenic 55.0%
!! TGGAGCACCGTTATCGGACT+TGG - chr1_3:74749636-74749655 None:intergenic 55.0%
AAGCCGCAATACTCGCAGCA+AGG + chr1_3:74749683-74749702 Msa0140510:CDS 55.0%
! CCACCTTGCTGCGAGTATTG+CGG - chr1_3:74749689-74749708 None:intergenic 55.0%
CGGATGGTTGCACAATCTGG+GGG + chr1_3:74750888-74750907 Msa0140510:CDS 55.0%
ATACCTTTGCATCCTCCCCC+AGG + chr1_3:74751282-74751301 Msa0140510:CDS 55.0%
GTTGATGTATCACCTGGGGG+AGG - chr1_3:74751297-74751316 None:intergenic 55.0%
GTAGATGAGCGCAAGTCCCA+AGG - chr1_3:74751955-74751974 None:intergenic 55.0%
GGTTATGGCTATGGGCAACC+TGG + chr1_3:74752483-74752502 Msa0140510:CDS 55.0%
GGGCAACCTGGATCATACTC+TGG + chr1_3:74752495-74752514 Msa0140510:CDS 55.0%
ATGCCTCAGCCACCATATGC+AGG + chr1_3:74752537-74752556 Msa0140510:CDS 55.0%
TAGCCTGCATATGGTGGCTG+AGG - chr1_3:74752543-74752562 None:intergenic 55.0%
GGAGGATAGCCTGCATATGG+TGG - chr1_3:74752549-74752568 None:intergenic 55.0%
GAATATCCACCGGGTTGCTG+AGG - chr1_3:74752570-74752589 None:intergenic 55.0%
CCGGTGGATATTCCACCAAC+TGG + chr1_3:74752577-74752596 Msa0140510:CDS 55.0%
!! AGTGGATTGGTCCCAGTTGG+TGG - chr1_3:74752592-74752611 None:intergenic 55.0%
!! TGCAGTGGATTGGTCCCAGT+TGG - chr1_3:74752595-74752614 None:intergenic 55.0%
GGTGAGATGGTGCAGTGGAT+TGG - chr1_3:74752605-74752624 None:intergenic 55.0%
CACCAGCAGTCTACTCATGC+AGG + chr1_3:74752621-74752640 Msa0140510:CDS 55.0%
CACCTGCATGAGTAGACTGC+TGG - chr1_3:74752626-74752645 None:intergenic 55.0%
CAGCAGTCTACTCATGCAGG+TGG + chr1_3:74752624-74752643 Msa0140510:CDS 55.0%
CCCCAGCAACAGCAAAATCC+TGG + chr1_3:74752669-74752688 Msa0140510:CDS 55.0%
!!! CCCCAGGATTTTGCTGTTGC+TGG - chr1_3:74752674-74752693 None:intergenic 55.0%
GTCCTTCACAGCCAGCTGAT+GGG + chr1_3:74752694-74752713 Msa0140510:CDS 55.0%
CTGTATGCAGACCCATCAGC+TGG - chr1_3:74752708-74752727 None:intergenic 55.0%
AGCCAACCAGGACAGGGTTA+TGG + chr1_3:74752756-74752775 Msa0140510:CDS 55.0%
GACCATAACCCTGTCCTGGT+TGG - chr1_3:74752761-74752780 None:intergenic 55.0%
TCTGCTCCCAGTTATGGCAG+TGG + chr1_3:74752867-74752886 Msa0140510:CDS 55.0%
CTGCTCCCAGTTATGGCAGT+GGG + chr1_3:74752868-74752887 Msa0140510:CDS 55.0%
! GTTGGAAGCGTGCCCTTCTT+GGG - chr1_3:74752904-74752923 None:intergenic 55.0%
! AGTTGGAAGCGTGCCCTTCT+TGG - chr1_3:74752905-74752924 None:intergenic 55.0%
! GAAGGGCACGCTTCCAACTA+TGG + chr1_3:74752906-74752925 Msa0140510:CDS 55.0%
!! AGTGGGTTGGGAAGTTTGGG+GGG - chr1_3:74752946-74752965 None:intergenic 55.0%
!! CTGGGCAACAGTAGTGGGTT+GGG - chr1_3:74752958-74752977 None:intergenic 55.0%
CCTTGCTGGGCAACAGTAGT+GGG - chr1_3:74752963-74752982 None:intergenic 55.0%
!! GGTTGGTAGCATAGCCTTGC+TGG - chr1_3:74752977-74752996 None:intergenic 55.0%
GTAGGGGCTACTGCATAACC+TGG - chr1_3:74753017-74753036 None:intergenic 55.0%
! GTTGACTTCCATAGGCCGCT+TGG - chr1_3:74753043-74753062 None:intergenic 55.0%
!! GCACTTGGCTTTTGAGAGGG+AGG - chr1_3:74753098-74753117 None:intergenic 55.0%
TCACAGTCACCTAGCACAGC+AGG + chr1_3:74753140-74753159 Msa0140510:CDS 55.0%
GGGTATGCTCAGCCAGAGTT+AGG + chr1_3:74753209-74753228 Msa0140510:CDS 55.0%
GCTCTCTGAGTGCCTAACTC+TGG - chr1_3:74753224-74753243 None:intergenic 55.0%
!! AGAGAGCACCAGTGCAACCA+GGG + chr1_3:74753237-74753256 Msa0140510:CDS 55.0%
TCATACGGTGCTCCTCAAGG+TGG + chr1_3:74753272-74753291 Msa0140510:CDS 55.0%
TTCCATATGACGGCGGAGTC+TGG - chr1_3:74753313-74753332 None:intergenic 55.0%
TAGCGATGGAGCAACTGCAC+AGG + chr1_3:74753376-74753395 Msa0140510:CDS 55.0%
AACTGCACAGGCTGTTCCAC+AGG + chr1_3:74753388-74753407 Msa0140510:CDS 55.0%
ACTGCACAGGCTGTTCCACA+GGG + chr1_3:74753389-74753408 Msa0140510:CDS 55.0%
ACTTTAGCAACACCGCCCTG+TGG - chr1_3:74753407-74753426 None:intergenic 55.0%
GGAACTTCGCCGCTCATTTC+AGG - chr1_3:74753710-74753729 None:intergenic 55.0%
CGATGAACAACCCACCGCCA+CGG + chr1_3:74749505-74749524 Msa0140510:CDS 60.0%
AGTTCGATGTCCGTGGCGGT+GGG - chr1_3:74749518-74749537 None:intergenic 60.0%
GGTGACGCTGAGAAGACGAG+CGG - chr1_3:74749579-74749598 None:intergenic 60.0%
GCTCGTCTTCTCAGCGTCAC+CGG + chr1_3:74749578-74749597 Msa0140510:CDS 60.0%
CCGCAATACTCGCAGCAAGG+TGG + chr1_3:74749686-74749705 Msa0140510:CDS 60.0%
TAGGCTGAAGCTGGGGCTTC+TGG + chr1_3:74750852-74750871 Msa0140510:intron 60.0%
CTTCTGGCGGTGGCACTAGA+CGG + chr1_3:74750868-74750887 Msa0140510:CDS 60.0%
TCACCTGGGGGAGGATGCAA+AGG - chr1_3:74751288-74751307 None:intergenic 60.0%
AGCTAGACGGTGGTCGGGAT+TGG - chr1_3:74752431-74752450 None:intergenic 60.0%
AATCCCGACCACCGTCTAGC+TGG + chr1_3:74752430-74752449 Msa0140510:CDS 60.0%
ATCCCGACCACCGTCTAGCT+GGG + chr1_3:74752431-74752450 Msa0140510:CDS 60.0%
TGTTGCACAGGAGCAGCAGG+AGG - chr1_3:74752459-74752478 None:intergenic 60.0%
! GCTTGTTGCACAGGAGCAGC+AGG - chr1_3:74752462-74752481 None:intergenic 60.0%
GCTGCTCCTGTGCAACAAGC+TGG + chr1_3:74752462-74752481 Msa0140510:CDS 60.0%
GGCTATCCTCCTCAGCAACC+CGG + chr1_3:74752558-74752577 Msa0140510:CDS 60.0%
TATCCTCCTCAGCAACCCGG+TGG + chr1_3:74752561-74752580 Msa0140510:CDS 60.0%
TATCCACCGGGTTGCTGAGG+AGG - chr1_3:74752567-74752586 None:intergenic 60.0%
CTGCTGGTGAGATGGTGCAG+TGG - chr1_3:74752610-74752629 None:intergenic 60.0%
GGTCCTTCACAGCCAGCTGA+TGG + chr1_3:74752693-74752712 Msa0140510:CDS 60.0%
GACCCATCAGCTGGCTGTGA+AGG - chr1_3:74752699-74752718 None:intergenic 60.0%
GAAGCGTGCCCTTCTTGGGT+TGG - chr1_3:74752900-74752919 None:intergenic 60.0%
!! GCTGGGCAACAGTAGTGGGT+TGG - chr1_3:74752959-74752978 None:intergenic 60.0%
CCCACTACTGTTGCCCAGCA+AGG + chr1_3:74752960-74752979 Msa0140510:CDS 60.0%
GCCTTGCTGGGCAACAGTAG+TGG - chr1_3:74752964-74752983 None:intergenic 60.0%
AGTAGCCCCTACCTCCCAAG+CGG + chr1_3:74753025-74753044 Msa0140510:CDS 60.0%
ATAGGCCGCTTGGGAGGTAG+GGG - chr1_3:74753033-74753052 None:intergenic 60.0%
CATAGGCCGCTTGGGAGGTA+GGG - chr1_3:74753034-74753053 None:intergenic 60.0%
ACTTCCATAGGCCGCTTGGG+AGG - chr1_3:74753039-74753058 None:intergenic 60.0%
!! GAGGGAGGAGCACCATAGCT+AGG - chr1_3:74753083-74753102 None:intergenic 60.0%
CAGTCACCTAGCACAGCAGG+AGG + chr1_3:74753143-74753162 Msa0140510:CDS 60.0%
CCATAGCCTCCTGCTGTGCT+AGG - chr1_3:74753152-74753171 None:intergenic 60.0%
CCTAGCACAGCAGGAGGCTA+TGG + chr1_3:74753149-74753168 Msa0140510:CDS 60.0%
TCTGGCTGAGCATACCCGGA+AGG - chr1_3:74753206-74753225 None:intergenic 60.0%
!! CAGAGAGCACCAGTGCAACC+AGG + chr1_3:74753236-74753255 Msa0140510:CDS 60.0%
GCACCAGTGCAACCAGGGTA+TGG + chr1_3:74753242-74753261 Msa0140510:CDS 60.0%
GGACCATACCCTGGTTGCAC+TGG - chr1_3:74753248-74753267 None:intergenic 60.0%
GCTCCAGCGTATGCTAGCGA+TGG + chr1_3:74753362-74753381 Msa0140510:CDS 60.0%
GCTCCATCGCTAGCATACGC+TGG - chr1_3:74753368-74753387 None:intergenic 60.0%
GAGTTCGATGTCCGTGGCGG+TGG - chr1_3:74749519-74749538 None:intergenic 65.0%
! GTAGGAGAGTGGTGGAGCGC+CGG - chr1_3:74749600-74749619 None:intergenic 65.0%
GCTGAAGCTGGGGCTTCTGG+CGG + chr1_3:74750855-74750874 Msa0140510:CDS 65.0%
TGGCGGTGGCACTAGACGGA+TGG + chr1_3:74750872-74750891 Msa0140510:CDS 65.0%
CAGCTGACTGCCCGACGACA+TGG + chr1_3:74751209-74751228 Msa0140510:intron 65.0%
AGCCCAGCTAGACGGTGGTC+GGG - chr1_3:74752436-74752455 None:intergenic 65.0%
GAGCCCAGCTAGACGGTGGT+CGG - chr1_3:74752437-74752456 None:intergenic 65.0%
GCAGGAGGAGCCCAGCTAGA+CGG - chr1_3:74752444-74752463 None:intergenic 65.0%
CCATAGGCCGCTTGGGAGGT+AGG - chr1_3:74753035-74753054 None:intergenic 65.0%
CCTACCTCCCAAGCGGCCTA+TGG + chr1_3:74753032-74753051 Msa0140510:CDS 65.0%
TGAGCATACCCGGAAGGCGG+GGG - chr1_3:74753200-74753219 None:intergenic 65.0%
CTGAGCATACCCGGAAGGCG+GGG - chr1_3:74753201-74753220 None:intergenic 65.0%
GCTGAGCATACCCGGAAGGC+GGG - chr1_3:74753202-74753221 None:intergenic 65.0%
GGCTGAGCATACCCGGAAGG+CGG - chr1_3:74753203-74753222 None:intergenic 65.0%
! TAGCCAGGCTGGCCACCTTG+AGG - chr1_3:74753287-74753306 None:intergenic 65.0%
CAAGGTGGCCAGCCTGGCTA+TGG + chr1_3:74753287-74753306 Msa0140510:CDS 65.0%
GAGTCTGGCCATAGCCAGGC+TGG - chr1_3:74753298-74753317 None:intergenic 65.0%
GGCCAGACTCCGCCGTCATA+TGG + chr1_3:74753308-74753327 Msa0140510:CDS 65.0%
GCACAGGCTGTTCCACAGGG+CGG + chr1_3:74753392-74753411 Msa0140510:CDS 65.0%
GAAGCTGGGGCTTCTGGCGG+TGG + chr1_3:74750858-74750877 Msa0140510:CDS 70.0%
GGAGGAGCCCAGCTAGACGG+TGG - chr1_3:74752441-74752460 None:intergenic 70.0%
GCTGGCTGTGAAGGACCCCC+AGG - chr1_3:74752690-74752709 None:intergenic 70.0%
!! GAAGGCGGGGGCTGGCTAGA+GGG - chr1_3:74753188-74753207 None:intergenic 70.0%
TCTAGCCAGCCCCCGCCTTC+CGG + chr1_3:74753188-74753207 Msa0140510:CDS 70.0%
GCTCCTCAAGGTGGCCAGCC+TGG + chr1_3:74753281-74753300 Msa0140510:CDS 70.0%
GGCGGAGTCTGGCCATAGCC+AGG - chr1_3:74753302-74753321 None:intergenic 70.0%
!! GGAAGGCGGGGGCTGGCTAG+AGG - chr1_3:74753189-74753208 None:intergenic 75.0%
CTAGCCAGCCCCCGCCTTCC+GGG + chr1_3:74753189-74753208 Msa0140510:CDS 75.0%
CATACCCGGAAGGCGGGGGC+TGG - chr1_3:74753196-74753215 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 74749375 74753836 74749375 ID=Msa0140510;Name=Msa0140510
chr1_3 mRNA 74749375 74753836 74749375 ID=Msa0140510-mRNA-1;Parent=Msa0140510;Name=Msa0140510-mRNA-1;_AED=0.07;_eAED=0.07;_QI=89|1|1|1|1|1|5|394|606
chr1_3 exon 74749375 74749937 74749375 ID=Msa0140510-mRNA-1:exon:26083;Parent=Msa0140510-mRNA-1
chr1_3 exon 74750855 74750944 74750855 ID=Msa0140510-mRNA-1:exon:26084;Parent=Msa0140510-mRNA-1
chr1_3 exon 74751042 74751113 74751042 ID=Msa0140510-mRNA-1:exon:26085;Parent=Msa0140510-mRNA-1
chr1_3 exon 74751279 74751398 74751279 ID=Msa0140510-mRNA-1:exon:26086;Parent=Msa0140510-mRNA-1
chr1_3 exon 74752378 74753836 74752378 ID=Msa0140510-mRNA-1:exon:26087;Parent=Msa0140510-mRNA-1
chr1_3 five_prime_UTR 74749375 74749463 74749375 ID=Msa0140510-mRNA-1:five_prime_utr;Parent=Msa0140510-mRNA-1
chr1_3 CDS 74749464 74749937 74749464 ID=Msa0140510-mRNA-1:cds;Parent=Msa0140510-mRNA-1
chr1_3 CDS 74750855 74750944 74750855 ID=Msa0140510-mRNA-1:cds;Parent=Msa0140510-mRNA-1
chr1_3 CDS 74751042 74751113 74751042 ID=Msa0140510-mRNA-1:cds;Parent=Msa0140510-mRNA-1
chr1_3 CDS 74751279 74751398 74751279 ID=Msa0140510-mRNA-1:cds;Parent=Msa0140510-mRNA-1
chr1_3 CDS 74752378 74753442 74752378 ID=Msa0140510-mRNA-1:cds;Parent=Msa0140510-mRNA-1
chr1_3 three_prime_UTR 74753443 74753836 74753443 ID=Msa0140510-mRNA-1:three_prime_utr;Parent=Msa0140510-mRNA-1
Gene Sequence

>Msa0140510

ATGGCGGAAGAAGCACAGTACGCAACCCTAAAACGCAAGTACGATGAACAACCCACCGCCACGGACATCGAACTCGAAGTCGCAAACGCCAAACAACGAGCTCAAGAAGTTGCCGCTCGTCTTCTCAGCGTCACCGGCGCTCCACCACTCTCCTACGATCCCAAACGAACCAAGTCCGATAACGGTGCTCCACAATCGGGGTTTGATTCTTACGATTTGAAGCCGCAATACTCGCAGCAAGGTGGTAGTTATGGTTCTAGTAAGAAGATTGAAATACCTAATGGTAGGGTTGGTGTTCTTATTGGTAAAGGAGGTGAAACTATTAAGTATCTTCAGATGCAATCTGGTGCTAAGATTCAAGTTACTCGTGATATGGATGCTGATCCTAATTCTCAGACTAGGATGGTTGAACTTATGGGTACTCCTGACGCTGTTTCTTCTGCTGAGAAACTCATCAATGAAGTCCTTGCTGAGGCTGAAGCTGGGGCTTCTGGCGGTGGCACTAGACGGATGGTTGCACAATCTGGGGGTGATGAATTTGTGATGCAAATACCAAACAATAAGGTTGGCCTTATAATTGGTAAAGGAGGAGAAACAATAAAGAGTATGCAAGCTTCTACCGGAGCACGAATTCAGGTGATACCTTTGCATCCTCCCCCAGGTGATACATCAACAGAAAGAACATTAAAAATCGATGGGACCCCTGATCAAATTGAATCAGCAAAGCAATTGGTTAATCAAATCCTCACTGGTGAGAATCGTCTCAGAAATTCAGGGAACTCAGGTGGCTATACTCAGCAAGGTTACCAATCCCGACCACCGTCTAGCTGGGCTCCTCCTGCTGCTCCTGTGCAACAAGCTGGTTATGGCTATGGGCAACCTGGATCATACTCTGGTCCATCACCGCAGTATAACATGCCTCAGCCACCATATGCAGGCTATCCTCCTCAGCAACCCGGTGGATATTCCACCAACTGGGACCAATCCACTGCACCATCTCACCAGCAGTCTACTCATGCAGGTGGTTATGATTATTACAACCAACAACCCCAGCAACAGCAAAATCCTGGGGGTCCTTCACAGCCAGCTGATGGGTCTGCATACAGTTACAGTCAACCTCCTTCCTCTGGTTATAGCCAACCAGGACAGGGTTATGGTCAAGAAAGCTATGGTGCGTATAATGCGCAACAACAACAATCTGGGTATGGTCAGCCACAAACATATGATCAGCAACAAGGTTATGGCTCTGCTCCCAGTTATGGCAGTGGGAGTAATCCAACCCAAGAAGGGCACGCTTCCAACTATGGATCACAAGCAGATACCCCCCAAACTTCCCAACCCACTACTGTTGCCCAGCAAGGCTATGCTACCAACCAACAAGGAACTCCTCAACCAGGTTATGCAGTAGCCCCTACCTCCCAAGCGGCCTATGGAAGTCAACCACAGTCTGGTTATGGACCTAGCTATGGTGCTCCTCCCTCTCAAAAGCCAAGTGCAAATCCACCTGTTTATGGTCAATCACAGTCACCTAGCACAGCAGGAGGCTATGGTCAGTCAGCTTATCCCTCTAGCCAGCCCCCGCCTTCCGGGTATGCTCAGCCAGAGTTAGGCACTCAGAGAGCACCAGTGCAACCAGGGTATGGTCCGCAATCATACGGTGCTCCTCAAGGTGGCCAGCCTGGCTATGGCCAGACTCCGCCGTCATATGGAAATAGTTCTTATGGTGCTGGTTATGTTCAGGCTCCAGCGTATGCTAGCGATGGAGCAACTGCACAGGCTGTTCCACAGGGCGGTGTTGCTAAAGTGTCACCCAAGAGTTGA
Protein sequence

>Msa0140510

MAEEAQYATLKRKYDEQPTATDIELEVANAKQRAQEVAARLLSVTGAPPLSYDPKRTKSDNGAPQSGFDSYDLKPQYSQQGGSYGSSKKIEIPNGRVGVLIGKGGETIKYLQMQSGAKIQVTRDMDADPNSQTRMVELMGTPDAVSSAEKLINEVLAEAEAGASGGGTRRMVAQSGGDEFVMQIPNNKVGLIIGKGGETIKSMQASTGARIQVIPLHPPPGDTSTERTLKIDGTPDQIESAKQLVNQILTGENRLRNSGNSGGYTQQGYQSRPPSSWAPPAAPVQQAGYGYGQPGSYSGPSPQYNMPQPPYAGYPPQQPGGYSTNWDQSTAPSHQQSTHAGGYDYYNQQPQQQQNPGGPSQPADGSAYSYSQPPSSGYSQPGQGYGQESYGAYNAQQQQSGYGQPQTYDQQQGYGSAPSYGSGSNPTQEGHASNYGSQADTPQTSQPTTVAQQGYATNQQGTPQPGYAVAPTSQAAYGSQPQSGYGPSYGAPPSQKPSANPPVYGQSQSPSTAGGYGQSAYPSSQPPPSGYAQPELGTQRAPVQPGYGPQSYGAPQGGQPGYGQTPPSYGNSSYGAGYVQAPAYASDGATAQAVPQGGVAKVSPKS*