AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0617690


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617690 MtrunA17_Chr8g0378091 99.363 471 3 0 1 471 1 471 0.0 975
Msa0617690 MtrunA17_Chr3g0121851 93.418 471 31 0 1 471 1 471 0.0 928
Msa0617690 MtrunA17_Chr2g0277581 64.224 464 161 1 4 462 128 591 0.0 648
Msa0617690 MtrunA17_Chr3g0115291 63.991 461 158 2 7 462 118 575 0.0 633
Msa0617690 MtrunA17_Chr5g0428001 58.030 467 187 5 9 469 42 505 0.0 556
Msa0617690 MtrunA17_Chr5g0411661 58.155 466 188 4 9 469 53 516 0.0 554
Msa0617690 MtrunA17_Chr2g0285171 57.860 458 173 5 12 461 87 532 0.0 537
Msa0617690 MtrunA17_Chr7g0268951 63.068 176 64 1 37 212 1 175 1.72e-72 227
Msa0617690 MtrunA17_Chr1g0186271 29.532 342 176 7 127 462 10 292 1.12e-39 145
Msa0617690 MtrunA17_Chr7g0268941 39.735 151 85 2 318 462 16 166 2.40e-29 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0617690 AT4G13930.1 88.747 471 53 0 1 471 1 471 0.0 889
Msa0617690 AT4G13890.1 78.205 468 102 0 1 468 1 468 0.0 794
Msa0617690 AT4G13890.2 79.284 391 81 0 1 391 1 391 0.0 674
Msa0617690 AT1G36370.1 62.446 466 170 1 4 464 130 595 0.0 629
Msa0617690 AT1G22020.2 62.069 464 171 1 4 462 134 597 0.0 623
Msa0617690 AT1G22020.1 62.069 464 171 1 4 462 134 597 0.0 623
Msa0617690 AT4G32520.2 59.570 465 169 6 3 461 77 528 0.0 567
Msa0617690 AT4G32520.1 59.570 465 169 6 3 461 77 528 0.0 567
Msa0617690 AT4G37930.1 57.692 468 191 4 9 471 52 517 0.0 565
Msa0617690 AT5G26780.1 56.197 468 198 4 9 471 52 517 0.0 546
Msa0617690 AT5G26780.4 56.197 468 198 4 9 471 52 517 0.0 546
Msa0617690 AT5G26780.2 54.752 484 196 6 9 471 52 533 0.0 537
Msa0617690 AT5G26780.3 54.752 484 196 6 9 471 52 533 0.0 537

Find 174 sgRNAs with CRISPR-Local

Find 281 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATTCCCACATTTCCAATTA+TGG 0.127617 4_2:-68356579 Msa0617690:exon
ATTCTCAGGCTGGCCCTTCT+TGG 0.198683 4_2:+68354708 None:intergenic
ATTTGGTATGCCTGGTTTCC+TGG 0.216412 4_2:-68353696 Msa0617690:CDS
TGGCCCTTCTTGGGTGGTTT+AGG 0.220073 4_2:+68354718 None:intergenic
TAATCCTCATGATCGGATTA+TGG 0.228344 4_2:-68356207 Msa0617690:CDS
CTTAATCGTTGGTTAGTTTA+TGG 0.235348 4_2:+68356721 None:intergenic
CTTTGAGAGTTTGCCGTATA+AGG 0.255272 4_2:-68356102 Msa0617690:CDS
AGTTTATGGTAGTTGGTTAT+TGG 0.278253 4_2:+68356735 None:intergenic
TCGATTAGGTCGTGGATCTC+TGG 0.281015 4_2:+68356512 None:intergenic
ACTCATGGTTACTATACTTC+TGG 0.285243 4_2:-68356155 Msa0617690:CDS
TTCTCAGGCTGGCCCTTCTT+GGG 0.286161 4_2:+68354709 None:intergenic
TCGTTAACGGGATCCATAAT+TGG 0.290094 4_2:+68356566 None:intergenic
GAGAAGTTCTCTTCTTCATT+TGG 0.300016 4_2:-68353713 Msa0617690:CDS
ATTGGGATTATAAACGGTTT+AGG 0.311040 4_2:-68355977 Msa0617690:CDS
CATGATATCACACTCAAAAT+AGG 0.316379 4_2:+68353577 None:intergenic
TTGGGATTATAAACGGTTTA+GGG 0.317920 4_2:-68355976 Msa0617690:CDS
TAAATTTAACATGTAGTTGC+AGG 0.324733 4_2:+68353376 None:intergenic
ATGGGATTGGATCTTCCTTC+AGG 0.332967 4_2:-68356188 Msa0617690:CDS
AATCCTCATGATCGGATTAT+GGG 0.338677 4_2:-68356206 Msa0617690:CDS
CCTTGCTGTTGCCTTGAAAC+AGG 0.346168 4_2:-68354602 Msa0617690:CDS
TCATATCGATCCACAATCTT+GGG 0.348360 4_2:-68356291 Msa0617690:CDS
GAAAAGGACTTTGAGAAGAT+TGG 0.349310 4_2:-68353860 Msa0617690:CDS
TCTTCTTCATTTGGTATGCC+TGG 0.356704 4_2:-68353704 Msa0617690:CDS
TTCATATCGATCCACAATCT+TGG 0.361702 4_2:-68356292 Msa0617690:CDS
TAGTGGCCTTGTTGCTGCTC+AGG 0.366141 4_2:-68355904 Msa0617690:intron
TTGTGGGATCTTCGCCCTCT+TGG 0.377790 4_2:-68354457 Msa0617690:CDS
AGTAGATTTGTTGTTCTTTG+AGG 0.380237 4_2:-68353340 None:intergenic
GTTGGTTAGTTTATGGTAGT+TGG 0.381318 4_2:+68356728 None:intergenic
CGATTAGGTCGTGGATCTCT+GGG 0.381977 4_2:+68356513 None:intergenic
TTGTTACCCCATTCGTTAAC+GGG 0.382478 4_2:+68356554 None:intergenic
TTCTAGAGGCTTGGTTGAAA+AGG 0.401166 4_2:-68353876 Msa0617690:CDS
TAGTGCTTACCCTAGGGATT+GGG 0.404659 4_2:-68355994 Msa0617690:CDS
CATGCCTTCGGAGTATTTGT+TGG 0.404874 4_2:+68356394 None:intergenic
ACAAGAGTTTGAGGGGTCCT+AGG 0.411398 4_2:-68354768 Msa0617690:CDS
CTAGGGATTGGGATTATAAA+CGG 0.417514 4_2:-68355983 Msa0617690:CDS
TTGAAACAGGCCATGTCACC+TGG 0.428213 4_2:-68354589 Msa0617690:CDS
TGCATTGGCCTTAACTTGCT+TGG 0.435848 4_2:+68354552 None:intergenic
GGCCATGTCACCTGGGTTCA+AGG 0.436813 4_2:-68354581 Msa0617690:CDS
GAAGGATTTCAACAAGGGCT+TGG 0.437560 4_2:-68353774 Msa0617690:CDS
AAATACTCCGAAGGCATGCC+GGG 0.440063 4_2:-68356389 Msa0617690:CDS
TTACCAACTCGTACTCCTCC+TGG 0.440340 4_2:+68354251 None:intergenic
TTTGTTACCCCATTCGTTAA+CGG 0.443616 4_2:+68356553 None:intergenic
GGCCATGACTTCTAGAGGCT+TGG 0.443671 4_2:-68353885 Msa0617690:CDS
TCATGATCGGATTATGGGAT+TGG 0.447111 4_2:-68356201 Msa0617690:CDS
AGGTGACATGGCCTGTTTCA+AGG 0.449189 4_2:+68354591 None:intergenic
GTAGTGCTTACCCTAGGGAT+TGG 0.449816 4_2:-68355995 Msa0617690:CDS
GATAGCAGTGCCTTGGCTCC+AGG 0.451399 4_2:-68354269 Msa0617690:CDS
CAACAGCAAGGGCACCAATC+TGG 0.454079 4_2:+68354614 None:intergenic
GGCATATGCCAAGCAAGTTA+AGG 0.458758 4_2:-68354560 Msa0617690:CDS
TATGGATCCCGTTAACGAAT+GGG 0.460396 4_2:-68356561 Msa0617690:CDS
AAGAGTGGAATGAATGAGAA+TGG 0.473078 4_2:+68356621 None:intergenic
CTTCGCCCTCTTGGATTGAC+TGG 0.475593 4_2:-68354448 Msa0617690:intron
CAACAACTCACAAGAGTTTG+AGG 0.475648 4_2:-68354777 Msa0617690:CDS
ACGGTTACCCGGCATGCCTT+CGG 0.480831 4_2:+68356382 None:intergenic
CACAACACTCAATTAACGCT+TGG 0.482881 4_2:-68356691 Msa0617690:five_prime_UTR
GTGGTGGTAGTGCTTACCCT+AGG 0.483011 4_2:-68356001 Msa0617690:CDS
CATACAAGCCACTTAGCAAA+AGG 0.484796 4_2:+68353438 None:intergenic
AAATCGTAAACTGCATTCTC+AGG 0.485003 4_2:+68354694 None:intergenic
ATTTCCAATGGCAACTGCAT+TGG 0.485964 4_2:+68354537 None:intergenic
AGTTTGAGGGGTCCTAGGGC+TGG 0.488241 4_2:-68354763 Msa0617690:CDS
CAAATACTCCGAAGGCATGC+CGG 0.492298 4_2:-68356390 Msa0617690:CDS
CGTAAACTGCATTCTCAGGC+TGG 0.492457 4_2:+68354698 None:intergenic
CTTCTGAAGGATTTCAACAA+GGG 0.500755 4_2:-68353779 Msa0617690:CDS
TGTGTCGGTTGTGTTTAAAA+AGG 0.502519 4_2:+68356653 None:intergenic
GTCGTCGAATTCACCTTATA+CGG 0.506731 4_2:+68356089 None:intergenic
GGGATCCATAATTGGAAATG+TGG 0.508919 4_2:+68356574 None:intergenic
AAGGCCAATGCAGTTGCCAT+TGG 0.512235 4_2:-68354541 Msa0617690:CDS
TCAGGCTGGCCCTTCTTGGG+TGG 0.515292 4_2:+68354712 None:intergenic
GGGCTGGAATGATCTTCTAC+AGG 0.516037 4_2:-68354747 Msa0617690:CDS
GGGACCTAAACCACCCAAGA+AGG 0.517255 4_2:-68354722 Msa0617690:CDS
TGAGAACCATCTTGTGTTGT+GGG 0.518139 4_2:-68354473 Msa0617690:CDS
TCAGGTGGACATTTGACTCA+TGG 0.518530 4_2:-68356170 Msa0617690:CDS
TGGAAATTACTTGATGAGCA+AGG 0.520445 4_2:-68354521 Msa0617690:CDS
CGTTTATAATCCCAATCCCT+AGG 0.523617 4_2:+68355984 None:intergenic
AGGCCTAGGTTGATTATCTG+TGG 0.524395 4_2:-68356020 Msa0617690:CDS
GTTAACGTTCAGCCTTACTC+TGG 0.524720 4_2:-68356266 Msa0617690:CDS
GGATTTCAACAAGGGCTTGG+TGG 0.525840 4_2:-68353771 Msa0617690:CDS
AGTGAGACGTTGGATTTGAG+AGG 0.529073 4_2:+68353642 None:intergenic
CAAGAGTTTGAGGGGTCCTA+GGG 0.529217 4_2:-68354767 Msa0617690:CDS
GTCGTGGATCTCTGGGTCGA+CGG 0.531722 4_2:+68356520 None:intergenic
TTCGCCGGTGAACCAGAGTA+AGG 0.533517 4_2:+68356254 None:intergenic
GTGAGACGTTGGATTTGAGA+GGG 0.534340 4_2:+68353643 None:intergenic
TAGGTTGGAGGAGAAAGCGT+TGG 0.534852 4_2:-68356048 Msa0617690:CDS
GGAAATTACTTGATGAGCAA+GGG 0.542211 4_2:-68354520 Msa0617690:CDS
TGAATGAATGAAAGAAAGAG+TGG 0.543244 4_2:+68356606 None:intergenic
CACAATGTCACAGTACTCAA+AGG 0.544775 4_2:+68354804 None:intergenic
ACAATGTCACAGTACTCAAA+GGG 0.547706 4_2:+68354805 None:intergenic
TGGTGGTAGTGCTTACCCTA+GGG 0.548765 4_2:-68356000 Msa0617690:CDS
AACAACTCACAAGAGTTTGA+GGG 0.550530 4_2:-68354776 Msa0617690:CDS
TATTGATTATGATAGGTTGG+AGG 0.550910 4_2:-68356060 Msa0617690:CDS
TTGGCATATGCCTTGAACCC+AGG 0.551473 4_2:+68354571 None:intergenic
AAGCTTGAAGAGCGCGTGAA+CGG 0.551498 4_2:+68356315 None:intergenic
TAGAAGATCATTCCAGCCCT+AGG 0.552646 4_2:+68354751 None:intergenic
TGCCTTGAACCCAGGTGACA+TGG 0.553241 4_2:+68354579 None:intergenic
TCAAACTTTGAGTGAGACGT+TGG 0.553745 4_2:+68353632 None:intergenic
ATTGTGAGGACCACCTTGAA+GGG 0.554639 4_2:+68354639 None:intergenic
CATATCGATCCACAATCTTG+GGG 0.560138 4_2:-68356290 Msa0617690:CDS
CCACCGTAGTAACGGTTACC+CGG 0.562429 4_2:+68356371 None:intergenic
TTATGGATCCCGTTAACGAA+TGG 0.563507 4_2:-68356562 Msa0617690:CDS
GATGTTCTTTGCAGGAAACA+AGG 0.566091 4_2:-68354348 Msa0617690:intron
TGAGGACCACCTTGAAGGGA+AGG 0.566539 4_2:+68354643 None:intergenic
CAAGGGCTTGGTGGACAACA+AGG 0.566901 4_2:-68353762 Msa0617690:CDS
AACCAAGCCTCTAGAAGTCA+TGG 0.567694 4_2:+68353883 None:intergenic
GGTCCTCACAATCACCAGAT+TGG 0.567733 4_2:-68354628 Msa0617690:CDS
GATTGTGAGGACCACCTTGA+AGG 0.568372 4_2:+68354638 None:intergenic
GAGAGCTTCGATGACGGCGA+AGG 0.570081 4_2:+68356430 None:intergenic
ATTCGTTACCACCGTAGTAA+CGG 0.570397 4_2:+68356363 None:intergenic
ATCTCAGATACCAGGAAACC+AGG 0.570656 4_2:+68353686 None:intergenic
ACGTTAACTCCCCAAGATTG+TGG 0.570906 4_2:+68356281 None:intergenic
CATGGTTACTATACTTCTGG+TGG 0.572834 4_2:-68356152 Msa0617690:CDS
TTCTGGTGGGAAGAAGATCT+CGG 0.577762 4_2:-68356138 Msa0617690:CDS
TCGTACTCCTCCTGGAGCCA+AGG 0.577883 4_2:+68354259 None:intergenic
TGTGGCCGTTGCTTAATCGT+TGG 0.578249 4_2:+68356710 None:intergenic
GCTCATCAAGTAATTTCCAA+TGG 0.578871 4_2:+68354525 None:intergenic
GGAGCATGGAAAACTTCTGA+AGG 0.579867 4_2:-68353792 Msa0617690:CDS
GTGTAAGCAGCGAAATTCGC+CGG 0.580461 4_2:+68356239 None:intergenic
CTAGAGATCCAGAAGGAGCA+TGG 0.581707 4_2:-68353806 Msa0617690:CDS
CTGAGAACCATCTTGTGTTG+TGG 0.583570 4_2:-68354474 Msa0617690:CDS
GGATTGGATCTTCCTTCAGG+TGG 0.584238 4_2:-68356185 Msa0617690:CDS
ACTTCTGAAGGATTTCAACA+AGG 0.584978 4_2:-68353780 Msa0617690:CDS
AAGGGATACAGTCTTGTCAC+TGG 0.587154 4_2:-68354502 Msa0617690:CDS
TTCGCCGTCATCGAAGCTCT+CGG 0.587338 4_2:-68356428 Msa0617690:CDS
TGGAATGATCTTCTACAGGA+AGG 0.588696 4_2:-68354743 Msa0617690:CDS
TGAGTGTCACAGCACGGTGA+AGG 0.589218 4_2:+68353831 None:intergenic
GGATCCATAATTGGAAATGT+GGG 0.597850 4_2:+68356575 None:intergenic
GCTGCCGAGAGCTTCGATGA+CGG 0.601481 4_2:+68356424 None:intergenic
GAAGATCCCACAACACAAGA+TGG 0.603113 4_2:+68354467 None:intergenic
CTGTTTCAAGGCAACAGCAA+GGG 0.603551 4_2:+68354603 None:intergenic
CCTAGGTTGATTATCTGTGG+TGG 0.604842 4_2:-68356017 Msa0617690:CDS
AGTTCTGTTAACAGGTGCTC+CGG 0.607108 4_2:-68353906 Msa0617690:intron
TATAAGGTGAATTCGACGAC+TGG 0.610662 4_2:-68356086 Msa0617690:CDS
GGAATGATCTTCTACAGGAA+GGG 0.611076 4_2:-68354742 Msa0617690:CDS
GGATACAGTCTTGTCACTGG+TGG 0.612060 4_2:-68354499 Msa0617690:CDS
TGAGTCAAATGTCCACCTGA+AGG 0.612892 4_2:+68356173 None:intergenic
GGACCTAAACCACCCAAGAA+GGG 0.613785 4_2:-68354721 Msa0617690:CDS
GCTCCGGCCATGACTTCTAG+AGG 0.616605 4_2:-68353890 Msa0617690:CDS
CCGTGCTTAATCCTCATGAT+CGG 0.621696 4_2:-68356214 Msa0617690:CDS
TGTACTTCATCTCAGATACC+AGG 0.622326 4_2:+68353678 None:intergenic
GTTTATAATCCCAATCCCTA+GGG 0.625521 4_2:+68355985 None:intergenic
AGGGATGTTGCTGATAAGTG+TGG 0.626741 4_2:-68355957 Msa0617690:CDS
TGAAACAGGCCATGTCACCT+GGG 0.627178 4_2:-68354588 Msa0617690:CDS
GCACCAATCTGGTGATTGTG+AGG 0.629254 4_2:+68354625 None:intergenic
AAGCCTCTAGAAGTCATGGC+CGG 0.629761 4_2:+68353887 None:intergenic
CCTGTTTCAAGGCAACAGCA+AGG 0.630010 4_2:+68354602 None:intergenic
TTTATACCTGAGCAGCAACA+AGG 0.632475 4_2:+68355898 None:intergenic
CGGAATCGAACTCATCGCAT+CGG 0.632638 4_2:-68356465 Msa0617690:CDS
GGTATCTGAGATGAAGTACA+AGG 0.632761 4_2:-68353675 Msa0617690:CDS
GCTCCAGGAGGAGTACGAGT+TGG 0.634787 4_2:-68354254 Msa0617690:intron
TCAGCCTTACTCTGGTTCAC+CGG 0.636199 4_2:-68356258 Msa0617690:CDS
CTCACTCAAAGTTTGAGACA+AGG 0.636420 4_2:-68353625 Msa0617690:three_prime_UTR
CCACCACAGATAATCAACCT+AGG 0.638606 4_2:+68356017 None:intergenic
CAAGCGTTAATTGAGTGTTG+TGG 0.640834 4_2:+68356692 None:intergenic
CTTTACCAGTCAATCCAAGA+GGG 0.641081 4_2:+68354443 None:intergenic
ATGGATCCCGTTAACGAATG+GGG 0.646563 4_2:-68356560 Msa0617690:CDS
AATCCCATAATCCGATCATG+AGG 0.648526 4_2:+68356203 None:intergenic
ATGGTTACTATACTTCTGGT+GGG 0.651704 4_2:-68356151 Msa0617690:CDS
ATGCCGGGTAACCGTTACTA+CGG 0.653366 4_2:-68356374 Msa0617690:CDS
TCTGGGTCGACGGTTACGAG+TGG 0.653406 4_2:+68356530 None:intergenic
TTAACCAACAAATACTCCGA+AGG 0.658341 4_2:-68356398 Msa0617690:CDS
ATGCGATGAGTTCGATTCCG+CGG 0.660307 4_2:+68356468 None:intergenic
GAGGACCACCTTGAAGGGAA+GGG 0.667267 4_2:+68354644 None:intergenic
TGTTGACTGTGATGTTACAG+AGG 0.668976 4_2:+68354309 None:intergenic
CCGGGTAACCGTTACTACGG+TGG 0.669545 4_2:-68356371 Msa0617690:CDS
ACTAACCAACGATTAAGCAA+CGG 0.671693 4_2:-68356715 Msa0617690:five_prime_UTR
ACTCAAAGTTTGAGACAAGG+TGG 0.675922 4_2:-68353622 Msa0617690:three_prime_UTR
ACAACTCACAAGAGTTTGAG+GGG 0.676117 4_2:-68354775 Msa0617690:CDS
GAATGGAAATGTGTGTGTGT+CGG 0.681473 4_2:+68356638 None:intergenic
CCGATCATGAGGATTAAGCA+CGG 0.689739 4_2:+68356214 None:intergenic
GTTCTTTGCAGGAAACAAGG+TGG 0.691862 4_2:-68354345 Msa0617690:intron
AGCAGTGCCTTGGCTCCAGG+AGG 0.693630 4_2:-68354266 Msa0617690:CDS
CCTTTACCAGTCAATCCAAG+AGG 0.696201 4_2:+68354442 None:intergenic
CTAGTGTGAGTGTCACAGCA+CGG 0.697489 4_2:+68353825 None:intergenic
ACTCACACTAGAGATCCAGA+AGG 0.729137 4_2:-68353813 Msa0617690:CDS
ATCATGAGGATTAAGCACGG+CGG 0.835014 4_2:+68356217 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAGAAAAAATATGATT+AGG + chr4_2:68356617-68356636 None:intergenic 10.0%
!! TATGAATCTAATTAACATAA+CGG + chr4_2:68354265-68354284 None:intergenic 15.0%
!! AATAAGATCCATTAAATTAA+GGG + chr4_2:68354444-68354463 None:intergenic 15.0%
!! AAATAAGATCCATTAAATTA+AGG + chr4_2:68354445-68354464 None:intergenic 15.0%
!!! TTTTTTTTTTTTTTTTGTGG+TGG - chr4_2:68354718-68354737 Msa0617690:CDS 15.0%
!! TAAATATTATTGATGTTCTT+GGG + chr4_2:68354872-68354891 None:intergenic 15.0%
!! AAGAACATCAATAATATTTA+GGG - chr4_2:68354872-68354891 Msa0617690:intron 15.0%
!! TTGAGTAAAATATAAAACAA+AGG + chr4_2:68356168-68356187 None:intergenic 15.0%
!!! TTTGTTTTATATTTTACTCA+AGG - chr4_2:68356167-68356186 Msa0617690:CDS 15.0%
!!! CAAAAAAAGAAATTAAGTTT+TGG - chr4_2:68356567-68356586 Msa0617690:exon 15.0%
!!! TTTTATTGATTATGATAGGT+TGG - chr4_2:68354044-68354063 Msa0617690:intron 20.0%
!! CTAAATATTATTGATGTTCT+TGG + chr4_2:68354873-68354892 None:intergenic 20.0%
!! CAAGAACATCAATAATATTT+AGG - chr4_2:68354871-68354890 Msa0617690:intron 20.0%
!! TAATGTAAGGATTTATTAGA+AGG - chr4_2:68355163-68355182 Msa0617690:intron 20.0%
!!! ATAATATGACTTGTTTTGTT+TGG - chr4_2:68355226-68355245 Msa0617690:intron 20.0%
!!! TATGGACTTAACTTTATTTT+CGG - chr4_2:68355888-68355907 Msa0617690:intron 20.0%
!! ACAAATCAAATAATACTACT+TGG + chr4_2:68356023-68356042 None:intergenic 20.0%
!!! GCATATTTACAATTTTTACA+TGG + chr4_2:68356055-68356074 None:intergenic 20.0%
!! TATACAGTAACAAGATTAAA+AGG + chr4_2:68356118-68356137 None:intergenic 20.0%
!!! CTGGTTTTATTGATTATGAT+AGG - chr4_2:68354040-68354059 Msa0617690:intron 25.0%
! ATTAAATTAAGGGAAATGTC+GGG + chr4_2:68354434-68354453 None:intergenic 25.0%
! CATTAAATTAAGGGAAATGT+CGG + chr4_2:68354435-68354454 None:intergenic 25.0%
!! ATCGATAAACTTGTCTTTTA+AGG - chr4_2:68354687-68354706 Msa0617690:CDS 25.0%
! TATTATTCATAAGCTTGTCA+AGG + chr4_2:68355011-68355030 None:intergenic 25.0%
! TACTCCTTATAGTTATACTA+TGG + chr4_2:68355100-68355119 None:intergenic 25.0%
! AATAAATCCTTACATTACCA+AGG + chr4_2:68355160-68355179 None:intergenic 25.0%
! TTTATATTGCGTACTATTTC+TGG - chr4_2:68355717-68355736 Msa0617690:intron 25.0%
!! CAAGTTGTTGTAAATTTTGT+TGG - chr4_2:68355941-68355960 Msa0617690:CDS 25.0%
! TAAATTTAACATGTAGTTGC+AGG + chr4_2:68356734-68356753 None:intergenic 25.0%
AGTTTATGGTAGTTGGTTAT+TGG + chr4_2:68353375-68353394 None:intergenic 30.0%
!! CTTAATCGTTGGTTAGTTTA+TGG + chr4_2:68353389-68353408 None:intergenic 30.0%
TGTGTTTAAAAAGGAAGAGA+TGG + chr4_2:68353448-68353467 None:intergenic 30.0%
TGAATGAATGAAAGAAAGAG+TGG + chr4_2:68353504-68353523 None:intergenic 30.0%
!!! GACGTTTTTCTTTTTCGATT+AGG + chr4_2:68353612-68353631 None:intergenic 30.0%
! TATTGATTATGATAGGTTGG+AGG - chr4_2:68354047-68354066 Msa0617690:intron 30.0%
ATTGGGATTATAAACGGTTT+AGG - chr4_2:68354130-68354149 Msa0617690:intron 30.0%
TTGGGATTATAAACGGTTTA+GGG - chr4_2:68354131-68354150 Msa0617690:intron 30.0%
TTAAATTAAGGGAAATGTCG+GGG + chr4_2:68354433-68354452 None:intergenic 30.0%
CGACATTTCCCTTAATTTAA+TGG - chr4_2:68354433-68354452 Msa0617690:intron 30.0%
TTCACTGTAAACAAACTATG+AGG + chr4_2:68354563-68354582 None:intergenic 30.0%
! TTGTTGTTATCTATTCCATC+TGG - chr4_2:68354617-68354636 Msa0617690:CDS 30.0%
!!! TTTTTTTTTTTTGTGGTGGC+CGG - chr4_2:68354722-68354741 Msa0617690:CDS 30.0%
TTTATCATAGCCCAGTTTAT+AGG + chr4_2:68354824-68354843 None:intergenic 30.0%
CTATGATAAACATTGATGCT+AGG - chr4_2:68354834-68354853 Msa0617690:intron 30.0%
! TTATTGATGTTCTTGGGTTT+TGG + chr4_2:68354866-68354885 None:intergenic 30.0%
AAAAATAAGCCAATCCAAAC+GGG + chr4_2:68354898-68354917 None:intergenic 30.0%
CAAAAATAAGCCAATCCAAA+CGG + chr4_2:68354899-68354918 None:intergenic 30.0%
TAAGTTCTCACTAACGAAAA+TGG - chr4_2:68354955-68354974 Msa0617690:intron 30.0%
CAAAAATTAGCCAATCCAAA+CGG - chr4_2:68355073-68355092 Msa0617690:intron 30.0%
AAAAATTAGCCAATCCAAAC+GGG - chr4_2:68355074-68355093 Msa0617690:intron 30.0%
!!! TTGATTATTTTTAGCCACCT+TGG - chr4_2:68355140-68355159 Msa0617690:intron 30.0%
! TTGTCTCAAAGCTTTTCTTA+CGG - chr4_2:68355200-68355219 Msa0617690:intron 30.0%
!! TAGTTATTTGTTGTGTGTAC+AGG - chr4_2:68355268-68355287 Msa0617690:intron 30.0%
! AACCAGGCAAGATAAATTTT+AGG + chr4_2:68355699-68355718 None:intergenic 30.0%
AATAGTACGCAATATAAACC+AGG + chr4_2:68355715-68355734 None:intergenic 30.0%
!!! GTCAACAAAAATGCTGTTTT+TGG - chr4_2:68355814-68355833 Msa0617690:intron 30.0%
!! AGTTGGTAAGAAACTTTGTA+TGG - chr4_2:68355870-68355889 Msa0617690:intron 30.0%
! TTATTTTCGGAGTCTAAACT+TGG - chr4_2:68355901-68355920 Msa0617690:intron 30.0%
! TATTTTCGGAGTCTAAACTT+GGG - chr4_2:68355902-68355921 Msa0617690:intron 30.0%
GTTGGAAATCAATTTGATTG+AGG - chr4_2:68355959-68355978 Msa0617690:CDS 30.0%
CTACTTGGTAAAGAAATGAA+AGG + chr4_2:68356008-68356027 None:intergenic 30.0%
CATGATATCACACTCAAAAT+AGG + chr4_2:68356533-68356552 None:intergenic 30.0%
!! TTTTGAGTGTGATATCATGA+TGG - chr4_2:68356534-68356553 Msa0617690:CDS 30.0%
!! GTTATTTTCCTTTTGCTAAG+TGG - chr4_2:68356661-68356680 Msa0617690:five_prime_UTR 30.0%
!! GTTGGTTAGTTTATGGTAGT+TGG + chr4_2:68353382-68353401 None:intergenic 35.0%
ACTAACCAACGATTAAGCAA+CGG - chr4_2:68353392-68353411 Msa0617690:three_prime_UTR 35.0%
!! TGTGTCGGTTGTGTTTAAAA+AGG + chr4_2:68353457-68353476 None:intergenic 35.0%
AAGAGTGGAATGAATGAGAA+TGG + chr4_2:68353489-68353508 None:intergenic 35.0%
CATTCCCACATTTCCAATTA+TGG - chr4_2:68353528-68353547 Msa0617690:three_prime_UTR 35.0%
GGATCCATAATTGGAAATGT+GGG + chr4_2:68353535-68353554 None:intergenic 35.0%
TTTGTTACCCCATTCGTTAA+CGG + chr4_2:68353557-68353576 None:intergenic 35.0%
!!! TTTCTTTTTCGATTAGGTCG+TGG + chr4_2:68353606-68353625 None:intergenic 35.0%
TTAACCAACAAATACTCCGA+AGG - chr4_2:68353709-68353728 Msa0617690:CDS 35.0%
! AACGGCAAAGATTTTCGATT+TGG + chr4_2:68353777-68353796 None:intergenic 35.0%
TTCATATCGATCCACAATCT+TGG - chr4_2:68353815-68353834 Msa0617690:CDS 35.0%
TCATATCGATCCACAATCTT+GGG - chr4_2:68353816-68353835 Msa0617690:CDS 35.0%
TAATCCTCATGATCGGATTA+TGG - chr4_2:68353900-68353919 Msa0617690:intron 35.0%
AATCCTCATGATCGGATTAT+GGG - chr4_2:68353901-68353920 Msa0617690:intron 35.0%
ACTCATGGTTACTATACTTC+TGG - chr4_2:68353952-68353971 Msa0617690:intron 35.0%
ATGGTTACTATACTTCTGGT+GGG - chr4_2:68353956-68353975 Msa0617690:intron 35.0%
GTTTATAATCCCAATCCCTA+GGG + chr4_2:68354125-68354144 None:intergenic 35.0%
CTAGGGATTGGGATTATAAA+CGG - chr4_2:68354124-68354143 Msa0617690:intron 35.0%
TAAATTAAGGGAAATGTCGG+GGG + chr4_2:68354432-68354451 None:intergenic 35.0%
TTCTTGTTCCGTTGAATTAG+AGG - chr4_2:68354522-68354541 Msa0617690:CDS 35.0%
TCTTGTTCCGTTGAATTAGA+GGG - chr4_2:68354523-68354542 Msa0617690:CDS 35.0%
!!! TTTTTTTTTTTGTGGTGGCC+GGG - chr4_2:68354723-68354742 Msa0617690:CDS 35.0%
TAAAGCCCATTCATTTGTCT+GGG + chr4_2:68354757-68354776 None:intergenic 35.0%
ATAAAGCCCATTCATTTGTC+TGG + chr4_2:68354758-68354777 None:intergenic 35.0%
ACAATGCCTTACCTATAAAC+TGG - chr4_2:68354810-68354829 Msa0617690:CDS 35.0%
CAATGCCTTACCTATAAACT+GGG - chr4_2:68354811-68354830 Msa0617690:CDS 35.0%
! AATAATATTTAGGGCCCGTT+TGG - chr4_2:68354881-68354900 Msa0617690:intron 35.0%
AAATCCTTACATTACCAAGG+TGG + chr4_2:68355157-68355176 None:intergenic 35.0%
ACAATGTCACAGTACTCAAA+GGG + chr4_2:68355305-68355324 None:intergenic 35.0%
AACAACTCACAAGAGTTTGA+GGG - chr4_2:68355331-68355350 Msa0617690:intron 35.0%
AAATCGTAAACTGCATTCTC+AGG + chr4_2:68355416-68355435 None:intergenic 35.0%
! GAATGCAGTTTACGATTTTG+AGG - chr4_2:68355418-68355437 Msa0617690:intron 35.0%
GCTCATCAAGTAATTTCCAA+TGG + chr4_2:68355585-68355604 None:intergenic 35.0%
TGGAAATTACTTGATGAGCA+AGG - chr4_2:68355586-68355605 Msa0617690:intron 35.0%
GGAAATTACTTGATGAGCAA+GGG - chr4_2:68355587-68355606 Msa0617690:intron 35.0%
!! GGCAAGATAAATTTTAGGTG+AGG + chr4_2:68355694-68355713 None:intergenic 35.0%
CACCTAAAATTTATCTTGCC+TGG - chr4_2:68355694-68355713 Msa0617690:intron 35.0%
! TTTCTGGAAACTTAATCTCG+CGG - chr4_2:68355733-68355752 Msa0617690:intron 35.0%
! GAAAAGGACTTTGAGAAGAT+TGG - chr4_2:68356247-68356266 Msa0617690:CDS 35.0%
! ACTTCTGAAGGATTTCAACA+AGG - chr4_2:68356327-68356346 Msa0617690:CDS 35.0%
! CTTCTGAAGGATTTCAACAA+GGG - chr4_2:68356328-68356347 Msa0617690:CDS 35.0%
GAGAAGTTCTCTTCTTCATT+TGG - chr4_2:68356394-68356413 Msa0617690:CDS 35.0%
! CAAGCGTTAATTGAGTGTTG+TGG + chr4_2:68353418-68353437 None:intergenic 40.0%
CACAACACTCAATTAACGCT+TGG - chr4_2:68353416-68353435 Msa0617690:three_prime_UTR 40.0%
GAATGGAAATGTGTGTGTGT+CGG + chr4_2:68353472-68353491 None:intergenic 40.0%
GGGATCCATAATTGGAAATG+TGG + chr4_2:68353536-68353555 None:intergenic 40.0%
TCGTTAACGGGATCCATAAT+TGG + chr4_2:68353544-68353563 None:intergenic 40.0%
TTATGGATCCCGTTAACGAA+TGG - chr4_2:68353545-68353564 Msa0617690:three_prime_UTR 40.0%
TATGGATCCCGTTAACGAAT+GGG - chr4_2:68353546-68353565 Msa0617690:three_prime_UTR 40.0%
TTGTTACCCCATTCGTTAAC+GGG + chr4_2:68353556-68353575 None:intergenic 40.0%
ATTCGTTACCACCGTAGTAA+CGG + chr4_2:68353747-68353766 None:intergenic 40.0%
CATATCGATCCACAATCTTG+GGG - chr4_2:68353817-68353836 Msa0617690:CDS 40.0%
AATCCCATAATCCGATCATG+AGG + chr4_2:68353907-68353926 None:intergenic 40.0%
TCATGATCGGATTATGGGAT+TGG - chr4_2:68353906-68353925 Msa0617690:intron 40.0%
CATGGTTACTATACTTCTGG+TGG - chr4_2:68353955-68353974 Msa0617690:intron 40.0%
! CTTTGAGAGTTTGCCGTATA+AGG - chr4_2:68354005-68354024 Msa0617690:intron 40.0%
GTCGTCGAATTCACCTTATA+CGG + chr4_2:68354021-68354040 None:intergenic 40.0%
TATAAGGTGAATTCGACGAC+TGG - chr4_2:68354021-68354040 Msa0617690:intron 40.0%
!!! AGGAGAAAGCGTTGGATTTT+AGG - chr4_2:68354067-68354086 Msa0617690:intron 40.0%
CGTTTATAATCCCAATCCCT+AGG + chr4_2:68354126-68354145 None:intergenic 40.0%
! TGCTCTTTTGCTTTGTGACA+TGG - chr4_2:68354173-68354192 Msa0617690:intron 40.0%
! TGTGACATGGCTCATTTTAG+TGG - chr4_2:68354186-68354205 Msa0617690:intron 40.0%
TTTATACCTGAGCAGCAACA+AGG + chr4_2:68354212-68354231 None:intergenic 40.0%
CTTGTTCCGTTGAATTAGAG+GGG - chr4_2:68354524-68354543 Msa0617690:CDS 40.0%
CATACTCCCCTCTAATTCAA+CGG + chr4_2:68354533-68354552 None:intergenic 40.0%
CCTTTAACAACAGATCCAGA+TGG + chr4_2:68354635-68354654 None:intergenic 40.0%
CCATCTGGATCTGTTGTTAA+AGG - chr4_2:68354632-68354651 Msa0617690:CDS 40.0%
!!! TTTTTTTTTTGTGGTGGCCG+GGG - chr4_2:68354724-68354743 Msa0617690:CDS 40.0%
AAAGCCCATTCATTTGTCTG+GGG + chr4_2:68354756-68354775 None:intergenic 40.0%
CATAGCCCAGTTTATAGGTA+AGG + chr4_2:68354819-68354838 None:intergenic 40.0%
TAGTTATACTATGGCCCGTT+TGG + chr4_2:68355091-68355110 None:intergenic 40.0%
CGGGCCATAGTATAACTATA+AGG - chr4_2:68355093-68355112 Msa0617690:intron 40.0%
!! TTAGCCACCTTGGTAATGTA+AGG - chr4_2:68355150-68355169 Msa0617690:intron 40.0%
CACAATGTCACAGTACTCAA+AGG + chr4_2:68355306-68355325 None:intergenic 40.0%
CAACAACTCACAAGAGTTTG+AGG - chr4_2:68355330-68355349 Msa0617690:intron 40.0%
ACAACTCACAAGAGTTTGAG+GGG - chr4_2:68355332-68355351 Msa0617690:intron 40.0%
TGGAATGATCTTCTACAGGA+AGG - chr4_2:68355364-68355383 Msa0617690:intron 40.0%
GGAATGATCTTCTACAGGAA+GGG - chr4_2:68355365-68355384 Msa0617690:intron 40.0%
ATTTCCAATGGCAACTGCAT+TGG + chr4_2:68355573-68355592 None:intergenic 40.0%
TGAGAACCATCTTGTGTTGT+GGG - chr4_2:68355634-68355653 Msa0617690:intron 40.0%
CTTTACCAGTCAATCCAAGA+GGG + chr4_2:68355667-68355686 None:intergenic 40.0%
GATGTTCTTTGCAGGAAACA+AGG - chr4_2:68355759-68355778 Msa0617690:intron 40.0%
! TGTTGACTGTGATGTTACAG+AGG + chr4_2:68355801-68355820 None:intergenic 40.0%
! TTTTACTCAAGGTAGCTGAC+TGG - chr4_2:68356178-68356197 Msa0617690:CDS 40.0%
! TTCTAGAGGCTTGGTTGAAA+AGG - chr4_2:68356231-68356250 Msa0617690:CDS 40.0%
TCTTCTTCATTTGGTATGCC+TGG - chr4_2:68356403-68356422 Msa0617690:CDS 40.0%
TGTACTTCATCTCAGATACC+AGG + chr4_2:68356432-68356451 None:intergenic 40.0%
! GGTATCTGAGATGAAGTACA+AGG - chr4_2:68356432-68356451 Msa0617690:CDS 40.0%
TCAAACTTTGAGTGAGACGT+TGG + chr4_2:68356478-68356497 None:intergenic 40.0%
! CTCACTCAAAGTTTGAGACA+AGG - chr4_2:68356482-68356501 Msa0617690:CDS 40.0%
! ACTCAAAGTTTGAGACAAGG+TGG - chr4_2:68356485-68356504 Msa0617690:CDS 40.0%
CATACAAGCCACTTAGCAAA+AGG + chr4_2:68356672-68356691 None:intergenic 40.0%
ATGGATCCCGTTAACGAATG+GGG - chr4_2:68353547-68353566 Msa0617690:three_prime_UTR 45.0%
! CATGCCTTCGGAGTATTTGT+TGG + chr4_2:68353716-68353735 None:intergenic 45.0%
ACGTTAACTCCCCAAGATTG+TGG + chr4_2:68353829-68353848 None:intergenic 45.0%
GTTAACGTTCAGCCTTACTC+TGG - chr4_2:68353841-68353860 Msa0617690:CDS 45.0%
ATCATGAGGATTAAGCACGG+CGG + chr4_2:68353893-68353912 None:intergenic 45.0%
CCGATCATGAGGATTAAGCA+CGG + chr4_2:68353896-68353915 None:intergenic 45.0%
CCGTGCTTAATCCTCATGAT+CGG - chr4_2:68353893-68353912 Msa0617690:CDS 45.0%
ATGGGATTGGATCTTCCTTC+AGG - chr4_2:68353919-68353938 Msa0617690:intron 45.0%
TGAGTCAAATGTCCACCTGA+AGG + chr4_2:68353937-68353956 None:intergenic 45.0%
TCAGGTGGACATTTGACTCA+TGG - chr4_2:68353937-68353956 Msa0617690:intron 45.0%
TTCTGGTGGGAAGAAGATCT+CGG - chr4_2:68353969-68353988 Msa0617690:intron 45.0%
!!! AAGCGTTGGATTTTAGGCCT+AGG - chr4_2:68354073-68354092 Msa0617690:intron 45.0%
!! AGGCCTAGGTTGATTATCTG+TGG - chr4_2:68354087-68354106 Msa0617690:intron 45.0%
CCACCACAGATAATCAACCT+AGG + chr4_2:68354093-68354112 None:intergenic 45.0%
!! CCTAGGTTGATTATCTGTGG+TGG - chr4_2:68354090-68354109 Msa0617690:intron 45.0%
TAGTGCTTACCCTAGGGATT+GGG - chr4_2:68354113-68354132 Msa0617690:intron 45.0%
AGGGATGTTGCTGATAAGTG+TGG - chr4_2:68354150-68354169 Msa0617690:intron 45.0%
TCGAACCCCAGACAAATGAA+TGG - chr4_2:68354748-68354767 Msa0617690:CDS 45.0%
CGAACCCCAGACAAATGAAT+GGG - chr4_2:68354749-68354768 Msa0617690:CDS 45.0%
! GGCTTTATAAGCTCCCATCA+TGG - chr4_2:68354770-68354789 Msa0617690:CDS 45.0%
! TATTTAGGGCCCGTTTGGAT+TGG - chr4_2:68354886-68354905 Msa0617690:intron 45.0%
ATACTATGGCCCGTTTGGAT+TGG + chr4_2:68355086-68355105 None:intergenic 45.0%
TAGAAGATCATTCCAGCCCT+AGG + chr4_2:68355359-68355378 None:intergenic 45.0%
ATTGTGAGGACCACCTTGAA+GGG + chr4_2:68355471-68355490 None:intergenic 45.0%
CTGTTTCAAGGCAACAGCAA+GGG + chr4_2:68355507-68355526 None:intergenic 45.0%
GGCATATGCCAAGCAAGTTA+AGG - chr4_2:68355547-68355566 Msa0617690:intron 45.0%
!! TGCATTGGCCTTAACTTGCT+TGG + chr4_2:68355558-68355577 None:intergenic 45.0%
! AAGGGATACAGTCTTGTCAC+TGG - chr4_2:68355605-68355624 Msa0617690:intron 45.0%
CTGAGAACCATCTTGTGTTG+TGG - chr4_2:68355633-68355652 Msa0617690:intron 45.0%
GAAGATCCCACAACACAAGA+TGG + chr4_2:68355643-68355662 None:intergenic 45.0%
CCTTTACCAGTCAATCCAAG+AGG + chr4_2:68355668-68355687 None:intergenic 45.0%
CCTCTTGGATTGACTGGTAA+AGG - chr4_2:68355665-68355684 Msa0617690:intron 45.0%
GTTCTTTGCAGGAAACAAGG+TGG - chr4_2:68355762-68355781 Msa0617690:intron 45.0%
CTGACTGGAGTTCTGTTAAC+AGG - chr4_2:68356193-68356212 Msa0617690:CDS 45.0%
AGTTCTGTTAACAGGTGCTC+CGG - chr4_2:68356201-68356220 Msa0617690:CDS 45.0%
! AACCAAGCCTCTAGAAGTCA+TGG + chr4_2:68356227-68356246 None:intergenic 45.0%
ACTCACACTAGAGATCCAGA+AGG - chr4_2:68356294-68356313 Msa0617690:CDS 45.0%
! GAAGTTTTCCATGCTCCTTC+TGG + chr4_2:68356312-68356331 None:intergenic 45.0%
GGAGCATGGAAAACTTCTGA+AGG - chr4_2:68356315-68356334 Msa0617690:CDS 45.0%
GAAGGATTTCAACAAGGGCT+TGG - chr4_2:68356333-68356352 Msa0617690:CDS 45.0%
ATTTGGTATGCCTGGTTTCC+TGG - chr4_2:68356411-68356430 Msa0617690:CDS 45.0%
ATCTCAGATACCAGGAAACC+AGG + chr4_2:68356424-68356443 None:intergenic 45.0%
GTGAGACGTTGGATTTGAGA+GGG + chr4_2:68356467-68356486 None:intergenic 45.0%
AGTGAGACGTTGGATTTGAG+AGG + chr4_2:68356468-68356487 None:intergenic 45.0%
!!! ATTTTTTTTTTTTTTTTTTG+TGG - chr4_2:68354715-68354734 Msa0617690:CDS 5.0%
TGTGGCCGTTGCTTAATCGT+TGG + chr4_2:68353400-68353419 None:intergenic 50.0%
CGATTAGGTCGTGGATCTCT+GGG + chr4_2:68353597-68353616 None:intergenic 50.0%
TCGATTAGGTCGTGGATCTC+TGG + chr4_2:68353598-68353617 None:intergenic 50.0%
GAAAAACGTCGTCAATGCCG+CGG - chr4_2:68353622-68353641 Msa0617690:three_prime_UTR 50.0%
ATGCGATGAGTTCGATTCCG+CGG + chr4_2:68353642-68353661 None:intergenic 50.0%
CGGAATCGAACTCATCGCAT+CGG - chr4_2:68353642-68353661 Msa0617690:three_prime_UTR 50.0%
! CAAATACTCCGAAGGCATGC+CGG - chr4_2:68353717-68353736 Msa0617690:CDS 50.0%
! AAATACTCCGAAGGCATGCC+GGG - chr4_2:68353718-68353737 Msa0617690:CDS 50.0%
ATGCCGGGTAACCGTTACTA+CGG - chr4_2:68353733-68353752 Msa0617690:CDS 50.0%
! AAGCTTGAAGAGCGCGTGAA+CGG + chr4_2:68353795-68353814 None:intergenic 50.0%
! TCAGCCTTACTCTGGTTCAC+CGG - chr4_2:68353849-68353868 Msa0617690:CDS 50.0%
GTGTAAGCAGCGAAATTCGC+CGG + chr4_2:68353871-68353890 None:intergenic 50.0%
GGATTGGATCTTCCTTCAGG+TGG - chr4_2:68353922-68353941 Msa0617690:intron 50.0%
! TAGGTTGGAGGAGAAAGCGT+TGG - chr4_2:68354059-68354078 Msa0617690:intron 50.0%
! TGGTGGTAGTGCTTACCCTA+GGG - chr4_2:68354107-68354126 Msa0617690:intron 50.0%
GTAGTGCTTACCCTAGGGAT+TGG - chr4_2:68354112-68354131 Msa0617690:intron 50.0%
TCCCATCATGGCTCAATGTG+TGG - chr4_2:68354782-68354801 Msa0617690:CDS 50.0%
CCCACACATTGAGCCATGAT+GGG + chr4_2:68354786-68354805 None:intergenic 50.0%
CCCATCATGGCTCAATGTGT+GGG - chr4_2:68354783-68354802 Msa0617690:CDS 50.0%
ACCCACACATTGAGCCATGA+TGG + chr4_2:68354787-68354806 None:intergenic 50.0%
ACAAGAGTTTGAGGGGTCCT+AGG - chr4_2:68355339-68355358 Msa0617690:intron 50.0%
CAAGAGTTTGAGGGGTCCTA+GGG - chr4_2:68355340-68355359 Msa0617690:intron 50.0%
GGGCTGGAATGATCTTCTAC+AGG - chr4_2:68355360-68355379 Msa0617690:intron 50.0%
GGACCTAAACCACCCAAGAA+GGG - chr4_2:68355386-68355405 Msa0617690:intron 50.0%
CGTAAACTGCATTCTCAGGC+TGG + chr4_2:68355412-68355431 None:intergenic 50.0%
! GCAGTTTTCCCTTCCCTTCA+AGG - chr4_2:68355455-68355474 Msa0617690:intron 50.0%
! GTTTTCCCTTCCCTTCAAGG+TGG - chr4_2:68355458-68355477 Msa0617690:intron 50.0%
GATTGTGAGGACCACCTTGA+AGG + chr4_2:68355472-68355491 None:intergenic 50.0%
GGTCCTCACAATCACCAGAT+TGG - chr4_2:68355479-68355498 Msa0617690:intron 50.0%
GCACCAATCTGGTGATTGTG+AGG + chr4_2:68355485-68355504 None:intergenic 50.0%
CCTGTTTCAAGGCAACAGCA+AGG + chr4_2:68355508-68355527 None:intergenic 50.0%
!! CCTTGCTGTTGCCTTGAAAC+AGG - chr4_2:68355505-68355524 Msa0617690:intron 50.0%
AGGTGACATGGCCTGTTTCA+AGG + chr4_2:68355519-68355538 None:intergenic 50.0%
TTGAAACAGGCCATGTCACC+TGG - chr4_2:68355518-68355537 Msa0617690:intron 50.0%
TGAAACAGGCCATGTCACCT+GGG - chr4_2:68355519-68355538 Msa0617690:intron 50.0%
TTGGCATATGCCTTGAACCC+AGG + chr4_2:68355539-68355558 None:intergenic 50.0%
AAGGCCAATGCAGTTGCCAT+TGG - chr4_2:68355566-68355585 Msa0617690:intron 50.0%
! GGATACAGTCTTGTCACTGG+TGG - chr4_2:68355608-68355627 Msa0617690:intron 50.0%
CGCGGTTTGATGTTCTTTGC+AGG - chr4_2:68355751-68355770 Msa0617690:intron 50.0%
! TTTTGGCGATAGCAGTGCCT+TGG - chr4_2:68355831-68355850 Msa0617690:intron 50.0%
TTACCAACTCGTACTCCTCC+TGG + chr4_2:68355859-68355878 None:intergenic 50.0%
! AAGCCTCTAGAAGTCATGGC+CGG + chr4_2:68356223-68356242 None:intergenic 50.0%
CTAGTGTGAGTGTCACAGCA+CGG + chr4_2:68356285-68356304 None:intergenic 50.0%
CTAGAGATCCAGAAGGAGCA+TGG - chr4_2:68356301-68356320 Msa0617690:CDS 50.0%
GGATTTCAACAAGGGCTTGG+TGG - chr4_2:68356336-68356355 Msa0617690:CDS 50.0%
TTCGCCGTCATCGAAGCTCT+CGG - chr4_2:68353679-68353698 Msa0617690:CDS 55.0%
CCACCGTAGTAACGGTTACC+CGG + chr4_2:68353739-68353758 None:intergenic 55.0%
TTCGCCGGTGAACCAGAGTA+AGG + chr4_2:68353856-68353875 None:intergenic 55.0%
! GTGGTGGTAGTGCTTACCCT+AGG - chr4_2:68354106-68354125 Msa0617690:intron 55.0%
!! TAGTGGCCTTGTTGCTGCTC+AGG - chr4_2:68354203-68354222 Msa0617690:intron 55.0%
!! AATGTCGGGGGCACTGGTTA+AGG + chr4_2:68354420-68354439 None:intergenic 55.0%
! TTTGTCTGGGGTTCGAACCC+CGG + chr4_2:68354744-68354763 None:intergenic 55.0%
GGGACCTAAACCACCCAAGA+AGG - chr4_2:68355385-68355404 Msa0617690:intron 55.0%
TGGCCCTTCTTGGGTGGTTT+AGG + chr4_2:68355392-68355411 None:intergenic 55.0%
! TTCTCAGGCTGGCCCTTCTT+GGG + chr4_2:68355401-68355420 None:intergenic 55.0%
! ATTCTCAGGCTGGCCCTTCT+TGG + chr4_2:68355402-68355421 None:intergenic 55.0%
GAGGACCACCTTGAAGGGAA+GGG + chr4_2:68355466-68355485 None:intergenic 55.0%
TGAGGACCACCTTGAAGGGA+AGG + chr4_2:68355467-68355486 None:intergenic 55.0%
!! CAACAGCAAGGGCACCAATC+TGG + chr4_2:68355496-68355515 None:intergenic 55.0%
TGCCTTGAACCCAGGTGACA+TGG + chr4_2:68355531-68355550 None:intergenic 55.0%
TTGTGGGATCTTCGCCCTCT+TGG - chr4_2:68355650-68355669 Msa0617690:intron 55.0%
CTTCGCCCTCTTGGATTGAC+TGG - chr4_2:68355659-68355678 Msa0617690:intron 55.0%
! GGCCATGACTTCTAGAGGCT+TGG - chr4_2:68356222-68356241 Msa0617690:CDS 55.0%
TGAGTGTCACAGCACGGTGA+AGG + chr4_2:68356279-68356298 None:intergenic 55.0%
!! CAAGGGCTTGGTGGACAACA+AGG - chr4_2:68356345-68356364 Msa0617690:CDS 55.0%
TCTGGGTCGACGGTTACGAG+TGG + chr4_2:68353580-68353599 None:intergenic 60.0%
GTCGTGGATCTCTGGGTCGA+CGG + chr4_2:68353590-68353609 None:intergenic 60.0%
! GAGAGCTTCGATGACGGCGA+AGG + chr4_2:68353680-68353699 None:intergenic 60.0%
GCTGCCGAGAGCTTCGATGA+CGG + chr4_2:68353686-68353705 None:intergenic 60.0%
ACGGTTACCCGGCATGCCTT+CGG + chr4_2:68353728-68353747 None:intergenic 60.0%
CCGGGTAACCGTTACTACGG+TGG - chr4_2:68353736-68353755 Msa0617690:CDS 60.0%
! AAGGGAAATGTCGGGGGCAC+TGG + chr4_2:68354426-68354445 None:intergenic 60.0%
AGTTTGAGGGGTCCTAGGGC+TGG - chr4_2:68355344-68355363 Msa0617690:intron 60.0%
GGCCATGTCACCTGGGTTCA+AGG - chr4_2:68355526-68355545 Msa0617690:intron 60.0%
GATAGCAGTGCCTTGGCTCC+AGG - chr4_2:68355838-68355857 Msa0617690:intron 60.0%
TCGTACTCCTCCTGGAGCCA+AGG + chr4_2:68355851-68355870 None:intergenic 60.0%
! GCTCCAGGAGGAGTACGAGT+TGG - chr4_2:68355853-68355872 Msa0617690:intron 60.0%
GCTCCGGCCATGACTTCTAG+AGG - chr4_2:68356217-68356236 Msa0617690:CDS 60.0%
! TCAGGCTGGCCCTTCTTGGG+TGG + chr4_2:68355398-68355417 None:intergenic 65.0%
AGCAGTGCCTTGGCTCCAGG+AGG - chr4_2:68355841-68355860 Msa0617690:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 68353342 68356787 68353342 ID=Msa0617690;Name=Msa0617690
chr4_2 mRNA 68353342 68356787 68353342 ID=Msa0617690-mRNA-1;Parent=Msa0617690;Name=Msa0617690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=205|1|1|1|1|1|4|328|471
chr4_2 exon 68353342 68353914 68353342 ID=Msa0617690-mRNA-1:exon:19620;Parent=Msa0617690-mRNA-1
chr4_2 exon 68354255 68354356 68354255 ID=Msa0617690-mRNA-1:exon:19619;Parent=Msa0617690-mRNA-1
chr4_2 exon 68354449 68354839 68354449 ID=Msa0617690-mRNA-1:exon:19618;Parent=Msa0617690-mRNA-1
chr4_2 exon 68355905 68356787 68355905 ID=Msa0617690-mRNA-1:exon:19617;Parent=Msa0617690-mRNA-1
chr4_2 five_prime_UTR 68356583 68356787 68356583 ID=Msa0617690-mRNA-1:five_prime_utr;Parent=Msa0617690-mRNA-1
chr4_2 CDS 68355905 68356582 68355905 ID=Msa0617690-mRNA-1:cds;Parent=Msa0617690-mRNA-1
chr4_2 CDS 68354449 68354839 68354449 ID=Msa0617690-mRNA-1:cds;Parent=Msa0617690-mRNA-1
chr4_2 CDS 68354255 68354356 68354255 ID=Msa0617690-mRNA-1:cds;Parent=Msa0617690-mRNA-1
chr4_2 CDS 68353670 68353914 68353670 ID=Msa0617690-mRNA-1:cds;Parent=Msa0617690-mRNA-1
chr4_2 three_prime_UTR 68353342 68353669 68353342 ID=Msa0617690-mRNA-1:three_prime_utr;Parent=Msa0617690-mRNA-1
Gene Sequence

>Msa0617690

ATGGATCCCGTTAACGAATGGGGTAACAAACCACTCGTAACCGTCGACCCAGAGATCCACGACCTAATCGAAAAAGAAAAACGTCGTCAATGCCGCGGAATCGAACTCATCGCATCGGAAAATTTCACTTCCTTCGCCGTCATCGAAGCTCTCGGCAGCGCTTTAACCAACAAATACTCCGAAGGCATGCCGGGTAACCGTTACTACGGTGGTAACGAATTCATCGACCAAATCGAAAATCTTTGCCGTTCACGCGCTCTTCAAGCTTTTCATATCGATCCACAATCTTGGGGAGTTAACGTTCAGCCTTACTCTGGTTCACCGGCGAATTTCGCTGCTTACACCGCCGTGCTTAATCCTCATGATCGGATTATGGGATTGGATCTTCCTTCAGGTGGACATTTGACTCATGGTTACTATACTTCTGGTGGGAAGAAGATCTCGGCGACTTCGATTTACTTTGAGAGTTTGCCGTATAAGGTGAATTCGACGACTGGTTTTATTGATTATGATAGGTTGGAGGAGAAAGCGTTGGATTTTAGGCCTAGGTTGATTATCTGTGGTGGTAGTGCTTACCCTAGGGATTGGGATTATAAACGGTTTAGGGATGTTGCTGATAAGTGTGGTGCTCTTTTGCTTTGTGACATGGCTCATTTTAGTGGCCTTGTTGCTGCTCAGGAAGTTAATAATCCCTTTGAGTACTGTGACATTGTGACAACAACAACTCACAAGAGTTTGAGGGGTCCTAGGGCTGGAATGATCTTCTACAGGAAGGGACCTAAACCACCCAAGAAGGGCCAGCCTGAGAATGCAGTTTACGATTTTGAGGACAAGATCAACTTTGCAGTTTTCCCTTCCCTTCAAGGTGGTCCTCACAATCACCAGATTGGTGCCCTTGCTGTTGCCTTGAAACAGGCCATGTCACCTGGGTTCAAGGCATATGCCAAGCAAGTTAAGGCCAATGCAGTTGCCATTGGAAATTACTTGATGAGCAAGGGATACAGTCTTGTCACTGGTGGAACTGAGAACCATCTTGTGTTGTGGGATCTTCGCCCTCTTGGATTGACTGGAAACAAGGTGGAGAAACTTTGTGACCTCTGTAACATCACAGTCAACAAAAATGCTGTTTTTGGCGATAGCAGTGCCTTGGCTCCAGGAGGAGTACGAGTTGGTGCTCCGGCCATGACTTCTAGAGGCTTGGTTGAAAAGGACTTTGAGAAGATTGGAGAGTTCCTTCACCGTGCTGTGACACTCACACTAGAGATCCAGAAGGAGCATGGAAAACTTCTGAAGGATTTCAACAAGGGCTTGGTGGACAACAAGGCTATTGCAGAACTCAAAGCTGATGTTGAGAAGTTCTCTTCTTCATTTGGTATGCCTGGTTTCCTGGTATCTGAGATGAAGTACAAGGATTAA

Protein sequence

>Msa0617690

MDPVNEWGNKPLVTVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGMPGNRYYGGNEFIDQIENLCRSRALQAFHIDPQSWGVNVQPYSGSPANFAAYTAVLNPHDRIMGLDLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNSTTGFIDYDRLEEKALDFRPRLIICGGSAYPRDWDYKRFRDVADKCGALLLCDMAHFSGLVAAQEVNNPFEYCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAMSPGFKAYAKQVKANAVAIGNYLMSKGYSLVTGGTENHLVLWDLRPLGLTGNKVEKLCDLCNITVNKNAVFGDSSALAPGGVRVGAPAMTSRGLVEKDFEKIGEFLHRAVTLTLEIQKEHGKLLKDFNKGLVDNKAIAELKADVEKFSSSFGMPGFLVSEMKYKD*