Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617690 | XP_003629601.1 | 99.363 | 471 | 3 | 0 | 1 | 471 | 1 | 471 | 0.0 | 975 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617690 | sp|O23254|GLYC4_ARATH | 88.747 | 471 | 53 | 0 | 1 | 471 | 1 | 471 | 0.0 | 889 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617690 | G7LH57 | 99.363 | 471 | 3 | 0 | 1 | 471 | 1 | 471 | 0.0 | 975 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0617690 | Msa0618020 | 0.820055 | 8.394776e-53 | -8.615850e-47 |
| Msa0617690 | Msa0657060 | 0.826084 | 3.293407e-54 | -8.615850e-47 |
| Msa0617690 | Msa0701040 | 0.831088 | 2.035126e-55 | -8.615850e-47 |
| Msa0617690 | Msa1408550 | 0.866946 | 1.965336e-65 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617690 | MtrunA17_Chr8g0378091 | 99.363 | 471 | 3 | 0 | 1 | 471 | 1 | 471 | 0.0 | 975 |
| Msa0617690 | MtrunA17_Chr3g0121851 | 93.418 | 471 | 31 | 0 | 1 | 471 | 1 | 471 | 0.0 | 928 |
| Msa0617690 | MtrunA17_Chr2g0277581 | 64.224 | 464 | 161 | 1 | 4 | 462 | 128 | 591 | 0.0 | 648 |
| Msa0617690 | MtrunA17_Chr3g0115291 | 63.991 | 461 | 158 | 2 | 7 | 462 | 118 | 575 | 0.0 | 633 |
| Msa0617690 | MtrunA17_Chr5g0428001 | 58.030 | 467 | 187 | 5 | 9 | 469 | 42 | 505 | 0.0 | 556 |
| Msa0617690 | MtrunA17_Chr5g0411661 | 58.155 | 466 | 188 | 4 | 9 | 469 | 53 | 516 | 0.0 | 554 |
| Msa0617690 | MtrunA17_Chr2g0285171 | 57.860 | 458 | 173 | 5 | 12 | 461 | 87 | 532 | 0.0 | 537 |
| Msa0617690 | MtrunA17_Chr7g0268951 | 63.068 | 176 | 64 | 1 | 37 | 212 | 1 | 175 | 1.72e-72 | 227 |
| Msa0617690 | MtrunA17_Chr1g0186271 | 29.532 | 342 | 176 | 7 | 127 | 462 | 10 | 292 | 1.12e-39 | 145 |
| Msa0617690 | MtrunA17_Chr7g0268941 | 39.735 | 151 | 85 | 2 | 318 | 462 | 16 | 166 | 2.40e-29 | 113 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0617690 | AT4G13930.1 | 88.747 | 471 | 53 | 0 | 1 | 471 | 1 | 471 | 0.0 | 889 |
| Msa0617690 | AT4G13890.1 | 78.205 | 468 | 102 | 0 | 1 | 468 | 1 | 468 | 0.0 | 794 |
| Msa0617690 | AT4G13890.2 | 79.284 | 391 | 81 | 0 | 1 | 391 | 1 | 391 | 0.0 | 674 |
| Msa0617690 | AT1G36370.1 | 62.446 | 466 | 170 | 1 | 4 | 464 | 130 | 595 | 0.0 | 629 |
| Msa0617690 | AT1G22020.2 | 62.069 | 464 | 171 | 1 | 4 | 462 | 134 | 597 | 0.0 | 623 |
| Msa0617690 | AT1G22020.1 | 62.069 | 464 | 171 | 1 | 4 | 462 | 134 | 597 | 0.0 | 623 |
| Msa0617690 | AT4G32520.2 | 59.570 | 465 | 169 | 6 | 3 | 461 | 77 | 528 | 0.0 | 567 |
| Msa0617690 | AT4G32520.1 | 59.570 | 465 | 169 | 6 | 3 | 461 | 77 | 528 | 0.0 | 567 |
| Msa0617690 | AT4G37930.1 | 57.692 | 468 | 191 | 4 | 9 | 471 | 52 | 517 | 0.0 | 565 |
| Msa0617690 | AT5G26780.1 | 56.197 | 468 | 198 | 4 | 9 | 471 | 52 | 517 | 0.0 | 546 |
| Msa0617690 | AT5G26780.4 | 56.197 | 468 | 198 | 4 | 9 | 471 | 52 | 517 | 0.0 | 546 |
| Msa0617690 | AT5G26780.2 | 54.752 | 484 | 196 | 6 | 9 | 471 | 52 | 533 | 0.0 | 537 |
| Msa0617690 | AT5G26780.3 | 54.752 | 484 | 196 | 6 | 9 | 471 | 52 | 533 | 0.0 | 537 |
Find 174 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCCCACATTTCCAATTA+TGG | 0.127617 | 4_2:-68356579 | Msa0617690:exon |
| ATTCTCAGGCTGGCCCTTCT+TGG | 0.198683 | 4_2:+68354708 | None:intergenic |
| ATTTGGTATGCCTGGTTTCC+TGG | 0.216412 | 4_2:-68353696 | Msa0617690:CDS |
| TGGCCCTTCTTGGGTGGTTT+AGG | 0.220073 | 4_2:+68354718 | None:intergenic |
| TAATCCTCATGATCGGATTA+TGG | 0.228344 | 4_2:-68356207 | Msa0617690:CDS |
| CTTAATCGTTGGTTAGTTTA+TGG | 0.235348 | 4_2:+68356721 | None:intergenic |
| CTTTGAGAGTTTGCCGTATA+AGG | 0.255272 | 4_2:-68356102 | Msa0617690:CDS |
| AGTTTATGGTAGTTGGTTAT+TGG | 0.278253 | 4_2:+68356735 | None:intergenic |
| TCGATTAGGTCGTGGATCTC+TGG | 0.281015 | 4_2:+68356512 | None:intergenic |
| ACTCATGGTTACTATACTTC+TGG | 0.285243 | 4_2:-68356155 | Msa0617690:CDS |
| TTCTCAGGCTGGCCCTTCTT+GGG | 0.286161 | 4_2:+68354709 | None:intergenic |
| TCGTTAACGGGATCCATAAT+TGG | 0.290094 | 4_2:+68356566 | None:intergenic |
| GAGAAGTTCTCTTCTTCATT+TGG | 0.300016 | 4_2:-68353713 | Msa0617690:CDS |
| ATTGGGATTATAAACGGTTT+AGG | 0.311040 | 4_2:-68355977 | Msa0617690:CDS |
| CATGATATCACACTCAAAAT+AGG | 0.316379 | 4_2:+68353577 | None:intergenic |
| TTGGGATTATAAACGGTTTA+GGG | 0.317920 | 4_2:-68355976 | Msa0617690:CDS |
| TAAATTTAACATGTAGTTGC+AGG | 0.324733 | 4_2:+68353376 | None:intergenic |
| ATGGGATTGGATCTTCCTTC+AGG | 0.332967 | 4_2:-68356188 | Msa0617690:CDS |
| AATCCTCATGATCGGATTAT+GGG | 0.338677 | 4_2:-68356206 | Msa0617690:CDS |
| CCTTGCTGTTGCCTTGAAAC+AGG | 0.346168 | 4_2:-68354602 | Msa0617690:CDS |
| TCATATCGATCCACAATCTT+GGG | 0.348360 | 4_2:-68356291 | Msa0617690:CDS |
| GAAAAGGACTTTGAGAAGAT+TGG | 0.349310 | 4_2:-68353860 | Msa0617690:CDS |
| TCTTCTTCATTTGGTATGCC+TGG | 0.356704 | 4_2:-68353704 | Msa0617690:CDS |
| TTCATATCGATCCACAATCT+TGG | 0.361702 | 4_2:-68356292 | Msa0617690:CDS |
| TAGTGGCCTTGTTGCTGCTC+AGG | 0.366141 | 4_2:-68355904 | Msa0617690:intron |
| TTGTGGGATCTTCGCCCTCT+TGG | 0.377790 | 4_2:-68354457 | Msa0617690:CDS |
| AGTAGATTTGTTGTTCTTTG+AGG | 0.380237 | 4_2:-68353340 | None:intergenic |
| GTTGGTTAGTTTATGGTAGT+TGG | 0.381318 | 4_2:+68356728 | None:intergenic |
| CGATTAGGTCGTGGATCTCT+GGG | 0.381977 | 4_2:+68356513 | None:intergenic |
| TTGTTACCCCATTCGTTAAC+GGG | 0.382478 | 4_2:+68356554 | None:intergenic |
| TTCTAGAGGCTTGGTTGAAA+AGG | 0.401166 | 4_2:-68353876 | Msa0617690:CDS |
| TAGTGCTTACCCTAGGGATT+GGG | 0.404659 | 4_2:-68355994 | Msa0617690:CDS |
| CATGCCTTCGGAGTATTTGT+TGG | 0.404874 | 4_2:+68356394 | None:intergenic |
| ACAAGAGTTTGAGGGGTCCT+AGG | 0.411398 | 4_2:-68354768 | Msa0617690:CDS |
| CTAGGGATTGGGATTATAAA+CGG | 0.417514 | 4_2:-68355983 | Msa0617690:CDS |
| TTGAAACAGGCCATGTCACC+TGG | 0.428213 | 4_2:-68354589 | Msa0617690:CDS |
| TGCATTGGCCTTAACTTGCT+TGG | 0.435848 | 4_2:+68354552 | None:intergenic |
| GGCCATGTCACCTGGGTTCA+AGG | 0.436813 | 4_2:-68354581 | Msa0617690:CDS |
| GAAGGATTTCAACAAGGGCT+TGG | 0.437560 | 4_2:-68353774 | Msa0617690:CDS |
| AAATACTCCGAAGGCATGCC+GGG | 0.440063 | 4_2:-68356389 | Msa0617690:CDS |
| TTACCAACTCGTACTCCTCC+TGG | 0.440340 | 4_2:+68354251 | None:intergenic |
| TTTGTTACCCCATTCGTTAA+CGG | 0.443616 | 4_2:+68356553 | None:intergenic |
| GGCCATGACTTCTAGAGGCT+TGG | 0.443671 | 4_2:-68353885 | Msa0617690:CDS |
| TCATGATCGGATTATGGGAT+TGG | 0.447111 | 4_2:-68356201 | Msa0617690:CDS |
| AGGTGACATGGCCTGTTTCA+AGG | 0.449189 | 4_2:+68354591 | None:intergenic |
| GTAGTGCTTACCCTAGGGAT+TGG | 0.449816 | 4_2:-68355995 | Msa0617690:CDS |
| GATAGCAGTGCCTTGGCTCC+AGG | 0.451399 | 4_2:-68354269 | Msa0617690:CDS |
| CAACAGCAAGGGCACCAATC+TGG | 0.454079 | 4_2:+68354614 | None:intergenic |
| GGCATATGCCAAGCAAGTTA+AGG | 0.458758 | 4_2:-68354560 | Msa0617690:CDS |
| TATGGATCCCGTTAACGAAT+GGG | 0.460396 | 4_2:-68356561 | Msa0617690:CDS |
| AAGAGTGGAATGAATGAGAA+TGG | 0.473078 | 4_2:+68356621 | None:intergenic |
| CTTCGCCCTCTTGGATTGAC+TGG | 0.475593 | 4_2:-68354448 | Msa0617690:intron |
| CAACAACTCACAAGAGTTTG+AGG | 0.475648 | 4_2:-68354777 | Msa0617690:CDS |
| ACGGTTACCCGGCATGCCTT+CGG | 0.480831 | 4_2:+68356382 | None:intergenic |
| CACAACACTCAATTAACGCT+TGG | 0.482881 | 4_2:-68356691 | Msa0617690:five_prime_UTR |
| GTGGTGGTAGTGCTTACCCT+AGG | 0.483011 | 4_2:-68356001 | Msa0617690:CDS |
| CATACAAGCCACTTAGCAAA+AGG | 0.484796 | 4_2:+68353438 | None:intergenic |
| AAATCGTAAACTGCATTCTC+AGG | 0.485003 | 4_2:+68354694 | None:intergenic |
| ATTTCCAATGGCAACTGCAT+TGG | 0.485964 | 4_2:+68354537 | None:intergenic |
| AGTTTGAGGGGTCCTAGGGC+TGG | 0.488241 | 4_2:-68354763 | Msa0617690:CDS |
| CAAATACTCCGAAGGCATGC+CGG | 0.492298 | 4_2:-68356390 | Msa0617690:CDS |
| CGTAAACTGCATTCTCAGGC+TGG | 0.492457 | 4_2:+68354698 | None:intergenic |
| CTTCTGAAGGATTTCAACAA+GGG | 0.500755 | 4_2:-68353779 | Msa0617690:CDS |
| TGTGTCGGTTGTGTTTAAAA+AGG | 0.502519 | 4_2:+68356653 | None:intergenic |
| GTCGTCGAATTCACCTTATA+CGG | 0.506731 | 4_2:+68356089 | None:intergenic |
| GGGATCCATAATTGGAAATG+TGG | 0.508919 | 4_2:+68356574 | None:intergenic |
| AAGGCCAATGCAGTTGCCAT+TGG | 0.512235 | 4_2:-68354541 | Msa0617690:CDS |
| TCAGGCTGGCCCTTCTTGGG+TGG | 0.515292 | 4_2:+68354712 | None:intergenic |
| GGGCTGGAATGATCTTCTAC+AGG | 0.516037 | 4_2:-68354747 | Msa0617690:CDS |
| GGGACCTAAACCACCCAAGA+AGG | 0.517255 | 4_2:-68354722 | Msa0617690:CDS |
| TGAGAACCATCTTGTGTTGT+GGG | 0.518139 | 4_2:-68354473 | Msa0617690:CDS |
| TCAGGTGGACATTTGACTCA+TGG | 0.518530 | 4_2:-68356170 | Msa0617690:CDS |
| TGGAAATTACTTGATGAGCA+AGG | 0.520445 | 4_2:-68354521 | Msa0617690:CDS |
| CGTTTATAATCCCAATCCCT+AGG | 0.523617 | 4_2:+68355984 | None:intergenic |
| AGGCCTAGGTTGATTATCTG+TGG | 0.524395 | 4_2:-68356020 | Msa0617690:CDS |
| GTTAACGTTCAGCCTTACTC+TGG | 0.524720 | 4_2:-68356266 | Msa0617690:CDS |
| GGATTTCAACAAGGGCTTGG+TGG | 0.525840 | 4_2:-68353771 | Msa0617690:CDS |
| AGTGAGACGTTGGATTTGAG+AGG | 0.529073 | 4_2:+68353642 | None:intergenic |
| CAAGAGTTTGAGGGGTCCTA+GGG | 0.529217 | 4_2:-68354767 | Msa0617690:CDS |
| GTCGTGGATCTCTGGGTCGA+CGG | 0.531722 | 4_2:+68356520 | None:intergenic |
| TTCGCCGGTGAACCAGAGTA+AGG | 0.533517 | 4_2:+68356254 | None:intergenic |
| GTGAGACGTTGGATTTGAGA+GGG | 0.534340 | 4_2:+68353643 | None:intergenic |
| TAGGTTGGAGGAGAAAGCGT+TGG | 0.534852 | 4_2:-68356048 | Msa0617690:CDS |
| GGAAATTACTTGATGAGCAA+GGG | 0.542211 | 4_2:-68354520 | Msa0617690:CDS |
| TGAATGAATGAAAGAAAGAG+TGG | 0.543244 | 4_2:+68356606 | None:intergenic |
| CACAATGTCACAGTACTCAA+AGG | 0.544775 | 4_2:+68354804 | None:intergenic |
| ACAATGTCACAGTACTCAAA+GGG | 0.547706 | 4_2:+68354805 | None:intergenic |
| TGGTGGTAGTGCTTACCCTA+GGG | 0.548765 | 4_2:-68356000 | Msa0617690:CDS |
| AACAACTCACAAGAGTTTGA+GGG | 0.550530 | 4_2:-68354776 | Msa0617690:CDS |
| TATTGATTATGATAGGTTGG+AGG | 0.550910 | 4_2:-68356060 | Msa0617690:CDS |
| TTGGCATATGCCTTGAACCC+AGG | 0.551473 | 4_2:+68354571 | None:intergenic |
| AAGCTTGAAGAGCGCGTGAA+CGG | 0.551498 | 4_2:+68356315 | None:intergenic |
| TAGAAGATCATTCCAGCCCT+AGG | 0.552646 | 4_2:+68354751 | None:intergenic |
| TGCCTTGAACCCAGGTGACA+TGG | 0.553241 | 4_2:+68354579 | None:intergenic |
| TCAAACTTTGAGTGAGACGT+TGG | 0.553745 | 4_2:+68353632 | None:intergenic |
| ATTGTGAGGACCACCTTGAA+GGG | 0.554639 | 4_2:+68354639 | None:intergenic |
| CATATCGATCCACAATCTTG+GGG | 0.560138 | 4_2:-68356290 | Msa0617690:CDS |
| CCACCGTAGTAACGGTTACC+CGG | 0.562429 | 4_2:+68356371 | None:intergenic |
| TTATGGATCCCGTTAACGAA+TGG | 0.563507 | 4_2:-68356562 | Msa0617690:CDS |
| GATGTTCTTTGCAGGAAACA+AGG | 0.566091 | 4_2:-68354348 | Msa0617690:intron |
| TGAGGACCACCTTGAAGGGA+AGG | 0.566539 | 4_2:+68354643 | None:intergenic |
| CAAGGGCTTGGTGGACAACA+AGG | 0.566901 | 4_2:-68353762 | Msa0617690:CDS |
| AACCAAGCCTCTAGAAGTCA+TGG | 0.567694 | 4_2:+68353883 | None:intergenic |
| GGTCCTCACAATCACCAGAT+TGG | 0.567733 | 4_2:-68354628 | Msa0617690:CDS |
| GATTGTGAGGACCACCTTGA+AGG | 0.568372 | 4_2:+68354638 | None:intergenic |
| GAGAGCTTCGATGACGGCGA+AGG | 0.570081 | 4_2:+68356430 | None:intergenic |
| ATTCGTTACCACCGTAGTAA+CGG | 0.570397 | 4_2:+68356363 | None:intergenic |
| ATCTCAGATACCAGGAAACC+AGG | 0.570656 | 4_2:+68353686 | None:intergenic |
| ACGTTAACTCCCCAAGATTG+TGG | 0.570906 | 4_2:+68356281 | None:intergenic |
| CATGGTTACTATACTTCTGG+TGG | 0.572834 | 4_2:-68356152 | Msa0617690:CDS |
| TTCTGGTGGGAAGAAGATCT+CGG | 0.577762 | 4_2:-68356138 | Msa0617690:CDS |
| TCGTACTCCTCCTGGAGCCA+AGG | 0.577883 | 4_2:+68354259 | None:intergenic |
| TGTGGCCGTTGCTTAATCGT+TGG | 0.578249 | 4_2:+68356710 | None:intergenic |
| GCTCATCAAGTAATTTCCAA+TGG | 0.578871 | 4_2:+68354525 | None:intergenic |
| GGAGCATGGAAAACTTCTGA+AGG | 0.579867 | 4_2:-68353792 | Msa0617690:CDS |
| GTGTAAGCAGCGAAATTCGC+CGG | 0.580461 | 4_2:+68356239 | None:intergenic |
| CTAGAGATCCAGAAGGAGCA+TGG | 0.581707 | 4_2:-68353806 | Msa0617690:CDS |
| CTGAGAACCATCTTGTGTTG+TGG | 0.583570 | 4_2:-68354474 | Msa0617690:CDS |
| GGATTGGATCTTCCTTCAGG+TGG | 0.584238 | 4_2:-68356185 | Msa0617690:CDS |
| ACTTCTGAAGGATTTCAACA+AGG | 0.584978 | 4_2:-68353780 | Msa0617690:CDS |
| AAGGGATACAGTCTTGTCAC+TGG | 0.587154 | 4_2:-68354502 | Msa0617690:CDS |
| TTCGCCGTCATCGAAGCTCT+CGG | 0.587338 | 4_2:-68356428 | Msa0617690:CDS |
| TGGAATGATCTTCTACAGGA+AGG | 0.588696 | 4_2:-68354743 | Msa0617690:CDS |
| TGAGTGTCACAGCACGGTGA+AGG | 0.589218 | 4_2:+68353831 | None:intergenic |
| GGATCCATAATTGGAAATGT+GGG | 0.597850 | 4_2:+68356575 | None:intergenic |
| GCTGCCGAGAGCTTCGATGA+CGG | 0.601481 | 4_2:+68356424 | None:intergenic |
| GAAGATCCCACAACACAAGA+TGG | 0.603113 | 4_2:+68354467 | None:intergenic |
| CTGTTTCAAGGCAACAGCAA+GGG | 0.603551 | 4_2:+68354603 | None:intergenic |
| CCTAGGTTGATTATCTGTGG+TGG | 0.604842 | 4_2:-68356017 | Msa0617690:CDS |
| AGTTCTGTTAACAGGTGCTC+CGG | 0.607108 | 4_2:-68353906 | Msa0617690:intron |
| TATAAGGTGAATTCGACGAC+TGG | 0.610662 | 4_2:-68356086 | Msa0617690:CDS |
| GGAATGATCTTCTACAGGAA+GGG | 0.611076 | 4_2:-68354742 | Msa0617690:CDS |
| GGATACAGTCTTGTCACTGG+TGG | 0.612060 | 4_2:-68354499 | Msa0617690:CDS |
| TGAGTCAAATGTCCACCTGA+AGG | 0.612892 | 4_2:+68356173 | None:intergenic |
| GGACCTAAACCACCCAAGAA+GGG | 0.613785 | 4_2:-68354721 | Msa0617690:CDS |
| GCTCCGGCCATGACTTCTAG+AGG | 0.616605 | 4_2:-68353890 | Msa0617690:CDS |
| CCGTGCTTAATCCTCATGAT+CGG | 0.621696 | 4_2:-68356214 | Msa0617690:CDS |
| TGTACTTCATCTCAGATACC+AGG | 0.622326 | 4_2:+68353678 | None:intergenic |
| GTTTATAATCCCAATCCCTA+GGG | 0.625521 | 4_2:+68355985 | None:intergenic |
| AGGGATGTTGCTGATAAGTG+TGG | 0.626741 | 4_2:-68355957 | Msa0617690:CDS |
| TGAAACAGGCCATGTCACCT+GGG | 0.627178 | 4_2:-68354588 | Msa0617690:CDS |
| GCACCAATCTGGTGATTGTG+AGG | 0.629254 | 4_2:+68354625 | None:intergenic |
| AAGCCTCTAGAAGTCATGGC+CGG | 0.629761 | 4_2:+68353887 | None:intergenic |
| CCTGTTTCAAGGCAACAGCA+AGG | 0.630010 | 4_2:+68354602 | None:intergenic |
| TTTATACCTGAGCAGCAACA+AGG | 0.632475 | 4_2:+68355898 | None:intergenic |
| CGGAATCGAACTCATCGCAT+CGG | 0.632638 | 4_2:-68356465 | Msa0617690:CDS |
| GGTATCTGAGATGAAGTACA+AGG | 0.632761 | 4_2:-68353675 | Msa0617690:CDS |
| GCTCCAGGAGGAGTACGAGT+TGG | 0.634787 | 4_2:-68354254 | Msa0617690:intron |
| TCAGCCTTACTCTGGTTCAC+CGG | 0.636199 | 4_2:-68356258 | Msa0617690:CDS |
| CTCACTCAAAGTTTGAGACA+AGG | 0.636420 | 4_2:-68353625 | Msa0617690:three_prime_UTR |
| CCACCACAGATAATCAACCT+AGG | 0.638606 | 4_2:+68356017 | None:intergenic |
| CAAGCGTTAATTGAGTGTTG+TGG | 0.640834 | 4_2:+68356692 | None:intergenic |
| CTTTACCAGTCAATCCAAGA+GGG | 0.641081 | 4_2:+68354443 | None:intergenic |
| ATGGATCCCGTTAACGAATG+GGG | 0.646563 | 4_2:-68356560 | Msa0617690:CDS |
| AATCCCATAATCCGATCATG+AGG | 0.648526 | 4_2:+68356203 | None:intergenic |
| ATGGTTACTATACTTCTGGT+GGG | 0.651704 | 4_2:-68356151 | Msa0617690:CDS |
| ATGCCGGGTAACCGTTACTA+CGG | 0.653366 | 4_2:-68356374 | Msa0617690:CDS |
| TCTGGGTCGACGGTTACGAG+TGG | 0.653406 | 4_2:+68356530 | None:intergenic |
| TTAACCAACAAATACTCCGA+AGG | 0.658341 | 4_2:-68356398 | Msa0617690:CDS |
| ATGCGATGAGTTCGATTCCG+CGG | 0.660307 | 4_2:+68356468 | None:intergenic |
| GAGGACCACCTTGAAGGGAA+GGG | 0.667267 | 4_2:+68354644 | None:intergenic |
| TGTTGACTGTGATGTTACAG+AGG | 0.668976 | 4_2:+68354309 | None:intergenic |
| CCGGGTAACCGTTACTACGG+TGG | 0.669545 | 4_2:-68356371 | Msa0617690:CDS |
| ACTAACCAACGATTAAGCAA+CGG | 0.671693 | 4_2:-68356715 | Msa0617690:five_prime_UTR |
| ACTCAAAGTTTGAGACAAGG+TGG | 0.675922 | 4_2:-68353622 | Msa0617690:three_prime_UTR |
| ACAACTCACAAGAGTTTGAG+GGG | 0.676117 | 4_2:-68354775 | Msa0617690:CDS |
| GAATGGAAATGTGTGTGTGT+CGG | 0.681473 | 4_2:+68356638 | None:intergenic |
| CCGATCATGAGGATTAAGCA+CGG | 0.689739 | 4_2:+68356214 | None:intergenic |
| GTTCTTTGCAGGAAACAAGG+TGG | 0.691862 | 4_2:-68354345 | Msa0617690:intron |
| AGCAGTGCCTTGGCTCCAGG+AGG | 0.693630 | 4_2:-68354266 | Msa0617690:CDS |
| CCTTTACCAGTCAATCCAAG+AGG | 0.696201 | 4_2:+68354442 | None:intergenic |
| CTAGTGTGAGTGTCACAGCA+CGG | 0.697489 | 4_2:+68353825 | None:intergenic |
| ACTCACACTAGAGATCCAGA+AGG | 0.729137 | 4_2:-68353813 | Msa0617690:CDS |
| ATCATGAGGATTAAGCACGG+CGG | 0.835014 | 4_2:+68356217 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATTAAGAAAAAATATGATT+AGG | + | chr4_2:68356617-68356636 | None:intergenic | 10.0% |
| !! | TATGAATCTAATTAACATAA+CGG | + | chr4_2:68354265-68354284 | None:intergenic | 15.0% |
| !! | AATAAGATCCATTAAATTAA+GGG | + | chr4_2:68354444-68354463 | None:intergenic | 15.0% |
| !! | AAATAAGATCCATTAAATTA+AGG | + | chr4_2:68354445-68354464 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTTTTTTTTGTGG+TGG | - | chr4_2:68354718-68354737 | Msa0617690:CDS | 15.0% |
| !! | TAAATATTATTGATGTTCTT+GGG | + | chr4_2:68354872-68354891 | None:intergenic | 15.0% |
| !! | AAGAACATCAATAATATTTA+GGG | - | chr4_2:68354872-68354891 | Msa0617690:intron | 15.0% |
| !! | TTGAGTAAAATATAAAACAA+AGG | + | chr4_2:68356168-68356187 | None:intergenic | 15.0% |
| !!! | TTTGTTTTATATTTTACTCA+AGG | - | chr4_2:68356167-68356186 | Msa0617690:CDS | 15.0% |
| !!! | CAAAAAAAGAAATTAAGTTT+TGG | - | chr4_2:68356567-68356586 | Msa0617690:exon | 15.0% |
| !!! | TTTTATTGATTATGATAGGT+TGG | - | chr4_2:68354044-68354063 | Msa0617690:intron | 20.0% |
| !! | CTAAATATTATTGATGTTCT+TGG | + | chr4_2:68354873-68354892 | None:intergenic | 20.0% |
| !! | CAAGAACATCAATAATATTT+AGG | - | chr4_2:68354871-68354890 | Msa0617690:intron | 20.0% |
| !! | TAATGTAAGGATTTATTAGA+AGG | - | chr4_2:68355163-68355182 | Msa0617690:intron | 20.0% |
| !!! | ATAATATGACTTGTTTTGTT+TGG | - | chr4_2:68355226-68355245 | Msa0617690:intron | 20.0% |
| !!! | TATGGACTTAACTTTATTTT+CGG | - | chr4_2:68355888-68355907 | Msa0617690:intron | 20.0% |
| !! | ACAAATCAAATAATACTACT+TGG | + | chr4_2:68356023-68356042 | None:intergenic | 20.0% |
| !!! | GCATATTTACAATTTTTACA+TGG | + | chr4_2:68356055-68356074 | None:intergenic | 20.0% |
| !! | TATACAGTAACAAGATTAAA+AGG | + | chr4_2:68356118-68356137 | None:intergenic | 20.0% |
| !!! | CTGGTTTTATTGATTATGAT+AGG | - | chr4_2:68354040-68354059 | Msa0617690:intron | 25.0% |
| ! | ATTAAATTAAGGGAAATGTC+GGG | + | chr4_2:68354434-68354453 | None:intergenic | 25.0% |
| ! | CATTAAATTAAGGGAAATGT+CGG | + | chr4_2:68354435-68354454 | None:intergenic | 25.0% |
| !! | ATCGATAAACTTGTCTTTTA+AGG | - | chr4_2:68354687-68354706 | Msa0617690:CDS | 25.0% |
| ! | TATTATTCATAAGCTTGTCA+AGG | + | chr4_2:68355011-68355030 | None:intergenic | 25.0% |
| ! | TACTCCTTATAGTTATACTA+TGG | + | chr4_2:68355100-68355119 | None:intergenic | 25.0% |
| ! | AATAAATCCTTACATTACCA+AGG | + | chr4_2:68355160-68355179 | None:intergenic | 25.0% |
| ! | TTTATATTGCGTACTATTTC+TGG | - | chr4_2:68355717-68355736 | Msa0617690:intron | 25.0% |
| !! | CAAGTTGTTGTAAATTTTGT+TGG | - | chr4_2:68355941-68355960 | Msa0617690:CDS | 25.0% |
| ! | TAAATTTAACATGTAGTTGC+AGG | + | chr4_2:68356734-68356753 | None:intergenic | 25.0% |
| AGTTTATGGTAGTTGGTTAT+TGG | + | chr4_2:68353375-68353394 | None:intergenic | 30.0% | |
| !! | CTTAATCGTTGGTTAGTTTA+TGG | + | chr4_2:68353389-68353408 | None:intergenic | 30.0% |
| TGTGTTTAAAAAGGAAGAGA+TGG | + | chr4_2:68353448-68353467 | None:intergenic | 30.0% | |
| TGAATGAATGAAAGAAAGAG+TGG | + | chr4_2:68353504-68353523 | None:intergenic | 30.0% | |
| !!! | GACGTTTTTCTTTTTCGATT+AGG | + | chr4_2:68353612-68353631 | None:intergenic | 30.0% |
| ! | TATTGATTATGATAGGTTGG+AGG | - | chr4_2:68354047-68354066 | Msa0617690:intron | 30.0% |
| ATTGGGATTATAAACGGTTT+AGG | - | chr4_2:68354130-68354149 | Msa0617690:intron | 30.0% | |
| TTGGGATTATAAACGGTTTA+GGG | - | chr4_2:68354131-68354150 | Msa0617690:intron | 30.0% | |
| TTAAATTAAGGGAAATGTCG+GGG | + | chr4_2:68354433-68354452 | None:intergenic | 30.0% | |
| CGACATTTCCCTTAATTTAA+TGG | - | chr4_2:68354433-68354452 | Msa0617690:intron | 30.0% | |
| TTCACTGTAAACAAACTATG+AGG | + | chr4_2:68354563-68354582 | None:intergenic | 30.0% | |
| ! | TTGTTGTTATCTATTCCATC+TGG | - | chr4_2:68354617-68354636 | Msa0617690:CDS | 30.0% |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | - | chr4_2:68354722-68354741 | Msa0617690:CDS | 30.0% |
| TTTATCATAGCCCAGTTTAT+AGG | + | chr4_2:68354824-68354843 | None:intergenic | 30.0% | |
| CTATGATAAACATTGATGCT+AGG | - | chr4_2:68354834-68354853 | Msa0617690:intron | 30.0% | |
| ! | TTATTGATGTTCTTGGGTTT+TGG | + | chr4_2:68354866-68354885 | None:intergenic | 30.0% |
| AAAAATAAGCCAATCCAAAC+GGG | + | chr4_2:68354898-68354917 | None:intergenic | 30.0% | |
| CAAAAATAAGCCAATCCAAA+CGG | + | chr4_2:68354899-68354918 | None:intergenic | 30.0% | |
| TAAGTTCTCACTAACGAAAA+TGG | - | chr4_2:68354955-68354974 | Msa0617690:intron | 30.0% | |
| CAAAAATTAGCCAATCCAAA+CGG | - | chr4_2:68355073-68355092 | Msa0617690:intron | 30.0% | |
| AAAAATTAGCCAATCCAAAC+GGG | - | chr4_2:68355074-68355093 | Msa0617690:intron | 30.0% | |
| !!! | TTGATTATTTTTAGCCACCT+TGG | - | chr4_2:68355140-68355159 | Msa0617690:intron | 30.0% |
| ! | TTGTCTCAAAGCTTTTCTTA+CGG | - | chr4_2:68355200-68355219 | Msa0617690:intron | 30.0% |
| !! | TAGTTATTTGTTGTGTGTAC+AGG | - | chr4_2:68355268-68355287 | Msa0617690:intron | 30.0% |
| ! | AACCAGGCAAGATAAATTTT+AGG | + | chr4_2:68355699-68355718 | None:intergenic | 30.0% |
| AATAGTACGCAATATAAACC+AGG | + | chr4_2:68355715-68355734 | None:intergenic | 30.0% | |
| !!! | GTCAACAAAAATGCTGTTTT+TGG | - | chr4_2:68355814-68355833 | Msa0617690:intron | 30.0% |
| !! | AGTTGGTAAGAAACTTTGTA+TGG | - | chr4_2:68355870-68355889 | Msa0617690:intron | 30.0% |
| ! | TTATTTTCGGAGTCTAAACT+TGG | - | chr4_2:68355901-68355920 | Msa0617690:intron | 30.0% |
| ! | TATTTTCGGAGTCTAAACTT+GGG | - | chr4_2:68355902-68355921 | Msa0617690:intron | 30.0% |
| GTTGGAAATCAATTTGATTG+AGG | - | chr4_2:68355959-68355978 | Msa0617690:CDS | 30.0% | |
| CTACTTGGTAAAGAAATGAA+AGG | + | chr4_2:68356008-68356027 | None:intergenic | 30.0% | |
| CATGATATCACACTCAAAAT+AGG | + | chr4_2:68356533-68356552 | None:intergenic | 30.0% | |
| !! | TTTTGAGTGTGATATCATGA+TGG | - | chr4_2:68356534-68356553 | Msa0617690:CDS | 30.0% |
| !! | GTTATTTTCCTTTTGCTAAG+TGG | - | chr4_2:68356661-68356680 | Msa0617690:five_prime_UTR | 30.0% |
| !! | GTTGGTTAGTTTATGGTAGT+TGG | + | chr4_2:68353382-68353401 | None:intergenic | 35.0% |
| ACTAACCAACGATTAAGCAA+CGG | - | chr4_2:68353392-68353411 | Msa0617690:three_prime_UTR | 35.0% | |
| !! | TGTGTCGGTTGTGTTTAAAA+AGG | + | chr4_2:68353457-68353476 | None:intergenic | 35.0% |
| AAGAGTGGAATGAATGAGAA+TGG | + | chr4_2:68353489-68353508 | None:intergenic | 35.0% | |
| CATTCCCACATTTCCAATTA+TGG | - | chr4_2:68353528-68353547 | Msa0617690:three_prime_UTR | 35.0% | |
| GGATCCATAATTGGAAATGT+GGG | + | chr4_2:68353535-68353554 | None:intergenic | 35.0% | |
| TTTGTTACCCCATTCGTTAA+CGG | + | chr4_2:68353557-68353576 | None:intergenic | 35.0% | |
| !!! | TTTCTTTTTCGATTAGGTCG+TGG | + | chr4_2:68353606-68353625 | None:intergenic | 35.0% |
| TTAACCAACAAATACTCCGA+AGG | - | chr4_2:68353709-68353728 | Msa0617690:CDS | 35.0% | |
| ! | AACGGCAAAGATTTTCGATT+TGG | + | chr4_2:68353777-68353796 | None:intergenic | 35.0% |
| TTCATATCGATCCACAATCT+TGG | - | chr4_2:68353815-68353834 | Msa0617690:CDS | 35.0% | |
| TCATATCGATCCACAATCTT+GGG | - | chr4_2:68353816-68353835 | Msa0617690:CDS | 35.0% | |
| TAATCCTCATGATCGGATTA+TGG | - | chr4_2:68353900-68353919 | Msa0617690:intron | 35.0% | |
| AATCCTCATGATCGGATTAT+GGG | - | chr4_2:68353901-68353920 | Msa0617690:intron | 35.0% | |
| ACTCATGGTTACTATACTTC+TGG | - | chr4_2:68353952-68353971 | Msa0617690:intron | 35.0% | |
| ATGGTTACTATACTTCTGGT+GGG | - | chr4_2:68353956-68353975 | Msa0617690:intron | 35.0% | |
| GTTTATAATCCCAATCCCTA+GGG | + | chr4_2:68354125-68354144 | None:intergenic | 35.0% | |
| CTAGGGATTGGGATTATAAA+CGG | - | chr4_2:68354124-68354143 | Msa0617690:intron | 35.0% | |
| TAAATTAAGGGAAATGTCGG+GGG | + | chr4_2:68354432-68354451 | None:intergenic | 35.0% | |
| TTCTTGTTCCGTTGAATTAG+AGG | - | chr4_2:68354522-68354541 | Msa0617690:CDS | 35.0% | |
| TCTTGTTCCGTTGAATTAGA+GGG | - | chr4_2:68354523-68354542 | Msa0617690:CDS | 35.0% | |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | - | chr4_2:68354723-68354742 | Msa0617690:CDS | 35.0% |
| TAAAGCCCATTCATTTGTCT+GGG | + | chr4_2:68354757-68354776 | None:intergenic | 35.0% | |
| ATAAAGCCCATTCATTTGTC+TGG | + | chr4_2:68354758-68354777 | None:intergenic | 35.0% | |
| ACAATGCCTTACCTATAAAC+TGG | - | chr4_2:68354810-68354829 | Msa0617690:CDS | 35.0% | |
| CAATGCCTTACCTATAAACT+GGG | - | chr4_2:68354811-68354830 | Msa0617690:CDS | 35.0% | |
| ! | AATAATATTTAGGGCCCGTT+TGG | - | chr4_2:68354881-68354900 | Msa0617690:intron | 35.0% |
| AAATCCTTACATTACCAAGG+TGG | + | chr4_2:68355157-68355176 | None:intergenic | 35.0% | |
| ACAATGTCACAGTACTCAAA+GGG | + | chr4_2:68355305-68355324 | None:intergenic | 35.0% | |
| AACAACTCACAAGAGTTTGA+GGG | - | chr4_2:68355331-68355350 | Msa0617690:intron | 35.0% | |
| AAATCGTAAACTGCATTCTC+AGG | + | chr4_2:68355416-68355435 | None:intergenic | 35.0% | |
| ! | GAATGCAGTTTACGATTTTG+AGG | - | chr4_2:68355418-68355437 | Msa0617690:intron | 35.0% |
| GCTCATCAAGTAATTTCCAA+TGG | + | chr4_2:68355585-68355604 | None:intergenic | 35.0% | |
| TGGAAATTACTTGATGAGCA+AGG | - | chr4_2:68355586-68355605 | Msa0617690:intron | 35.0% | |
| GGAAATTACTTGATGAGCAA+GGG | - | chr4_2:68355587-68355606 | Msa0617690:intron | 35.0% | |
| !! | GGCAAGATAAATTTTAGGTG+AGG | + | chr4_2:68355694-68355713 | None:intergenic | 35.0% |
| CACCTAAAATTTATCTTGCC+TGG | - | chr4_2:68355694-68355713 | Msa0617690:intron | 35.0% | |
| ! | TTTCTGGAAACTTAATCTCG+CGG | - | chr4_2:68355733-68355752 | Msa0617690:intron | 35.0% |
| ! | GAAAAGGACTTTGAGAAGAT+TGG | - | chr4_2:68356247-68356266 | Msa0617690:CDS | 35.0% |
| ! | ACTTCTGAAGGATTTCAACA+AGG | - | chr4_2:68356327-68356346 | Msa0617690:CDS | 35.0% |
| ! | CTTCTGAAGGATTTCAACAA+GGG | - | chr4_2:68356328-68356347 | Msa0617690:CDS | 35.0% |
| GAGAAGTTCTCTTCTTCATT+TGG | - | chr4_2:68356394-68356413 | Msa0617690:CDS | 35.0% | |
| ! | CAAGCGTTAATTGAGTGTTG+TGG | + | chr4_2:68353418-68353437 | None:intergenic | 40.0% |
| CACAACACTCAATTAACGCT+TGG | - | chr4_2:68353416-68353435 | Msa0617690:three_prime_UTR | 40.0% | |
| GAATGGAAATGTGTGTGTGT+CGG | + | chr4_2:68353472-68353491 | None:intergenic | 40.0% | |
| GGGATCCATAATTGGAAATG+TGG | + | chr4_2:68353536-68353555 | None:intergenic | 40.0% | |
| TCGTTAACGGGATCCATAAT+TGG | + | chr4_2:68353544-68353563 | None:intergenic | 40.0% | |
| TTATGGATCCCGTTAACGAA+TGG | - | chr4_2:68353545-68353564 | Msa0617690:three_prime_UTR | 40.0% | |
| TATGGATCCCGTTAACGAAT+GGG | - | chr4_2:68353546-68353565 | Msa0617690:three_prime_UTR | 40.0% | |
| TTGTTACCCCATTCGTTAAC+GGG | + | chr4_2:68353556-68353575 | None:intergenic | 40.0% | |
| ATTCGTTACCACCGTAGTAA+CGG | + | chr4_2:68353747-68353766 | None:intergenic | 40.0% | |
| CATATCGATCCACAATCTTG+GGG | - | chr4_2:68353817-68353836 | Msa0617690:CDS | 40.0% | |
| AATCCCATAATCCGATCATG+AGG | + | chr4_2:68353907-68353926 | None:intergenic | 40.0% | |
| TCATGATCGGATTATGGGAT+TGG | - | chr4_2:68353906-68353925 | Msa0617690:intron | 40.0% | |
| CATGGTTACTATACTTCTGG+TGG | - | chr4_2:68353955-68353974 | Msa0617690:intron | 40.0% | |
| ! | CTTTGAGAGTTTGCCGTATA+AGG | - | chr4_2:68354005-68354024 | Msa0617690:intron | 40.0% |
| GTCGTCGAATTCACCTTATA+CGG | + | chr4_2:68354021-68354040 | None:intergenic | 40.0% | |
| TATAAGGTGAATTCGACGAC+TGG | - | chr4_2:68354021-68354040 | Msa0617690:intron | 40.0% | |
| !!! | AGGAGAAAGCGTTGGATTTT+AGG | - | chr4_2:68354067-68354086 | Msa0617690:intron | 40.0% |
| CGTTTATAATCCCAATCCCT+AGG | + | chr4_2:68354126-68354145 | None:intergenic | 40.0% | |
| ! | TGCTCTTTTGCTTTGTGACA+TGG | - | chr4_2:68354173-68354192 | Msa0617690:intron | 40.0% |
| ! | TGTGACATGGCTCATTTTAG+TGG | - | chr4_2:68354186-68354205 | Msa0617690:intron | 40.0% |
| TTTATACCTGAGCAGCAACA+AGG | + | chr4_2:68354212-68354231 | None:intergenic | 40.0% | |
| CTTGTTCCGTTGAATTAGAG+GGG | - | chr4_2:68354524-68354543 | Msa0617690:CDS | 40.0% | |
| CATACTCCCCTCTAATTCAA+CGG | + | chr4_2:68354533-68354552 | None:intergenic | 40.0% | |
| CCTTTAACAACAGATCCAGA+TGG | + | chr4_2:68354635-68354654 | None:intergenic | 40.0% | |
| CCATCTGGATCTGTTGTTAA+AGG | - | chr4_2:68354632-68354651 | Msa0617690:CDS | 40.0% | |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | - | chr4_2:68354724-68354743 | Msa0617690:CDS | 40.0% |
| AAAGCCCATTCATTTGTCTG+GGG | + | chr4_2:68354756-68354775 | None:intergenic | 40.0% | |
| CATAGCCCAGTTTATAGGTA+AGG | + | chr4_2:68354819-68354838 | None:intergenic | 40.0% | |
| TAGTTATACTATGGCCCGTT+TGG | + | chr4_2:68355091-68355110 | None:intergenic | 40.0% | |
| CGGGCCATAGTATAACTATA+AGG | - | chr4_2:68355093-68355112 | Msa0617690:intron | 40.0% | |
| !! | TTAGCCACCTTGGTAATGTA+AGG | - | chr4_2:68355150-68355169 | Msa0617690:intron | 40.0% |
| CACAATGTCACAGTACTCAA+AGG | + | chr4_2:68355306-68355325 | None:intergenic | 40.0% | |
| CAACAACTCACAAGAGTTTG+AGG | - | chr4_2:68355330-68355349 | Msa0617690:intron | 40.0% | |
| ACAACTCACAAGAGTTTGAG+GGG | - | chr4_2:68355332-68355351 | Msa0617690:intron | 40.0% | |
| TGGAATGATCTTCTACAGGA+AGG | - | chr4_2:68355364-68355383 | Msa0617690:intron | 40.0% | |
| GGAATGATCTTCTACAGGAA+GGG | - | chr4_2:68355365-68355384 | Msa0617690:intron | 40.0% | |
| ATTTCCAATGGCAACTGCAT+TGG | + | chr4_2:68355573-68355592 | None:intergenic | 40.0% | |
| TGAGAACCATCTTGTGTTGT+GGG | - | chr4_2:68355634-68355653 | Msa0617690:intron | 40.0% | |
| CTTTACCAGTCAATCCAAGA+GGG | + | chr4_2:68355667-68355686 | None:intergenic | 40.0% | |
| GATGTTCTTTGCAGGAAACA+AGG | - | chr4_2:68355759-68355778 | Msa0617690:intron | 40.0% | |
| ! | TGTTGACTGTGATGTTACAG+AGG | + | chr4_2:68355801-68355820 | None:intergenic | 40.0% |
| ! | TTTTACTCAAGGTAGCTGAC+TGG | - | chr4_2:68356178-68356197 | Msa0617690:CDS | 40.0% |
| ! | TTCTAGAGGCTTGGTTGAAA+AGG | - | chr4_2:68356231-68356250 | Msa0617690:CDS | 40.0% |
| TCTTCTTCATTTGGTATGCC+TGG | - | chr4_2:68356403-68356422 | Msa0617690:CDS | 40.0% | |
| TGTACTTCATCTCAGATACC+AGG | + | chr4_2:68356432-68356451 | None:intergenic | 40.0% | |
| ! | GGTATCTGAGATGAAGTACA+AGG | - | chr4_2:68356432-68356451 | Msa0617690:CDS | 40.0% |
| TCAAACTTTGAGTGAGACGT+TGG | + | chr4_2:68356478-68356497 | None:intergenic | 40.0% | |
| ! | CTCACTCAAAGTTTGAGACA+AGG | - | chr4_2:68356482-68356501 | Msa0617690:CDS | 40.0% |
| ! | ACTCAAAGTTTGAGACAAGG+TGG | - | chr4_2:68356485-68356504 | Msa0617690:CDS | 40.0% |
| CATACAAGCCACTTAGCAAA+AGG | + | chr4_2:68356672-68356691 | None:intergenic | 40.0% | |
| ATGGATCCCGTTAACGAATG+GGG | - | chr4_2:68353547-68353566 | Msa0617690:three_prime_UTR | 45.0% | |
| ! | CATGCCTTCGGAGTATTTGT+TGG | + | chr4_2:68353716-68353735 | None:intergenic | 45.0% |
| ACGTTAACTCCCCAAGATTG+TGG | + | chr4_2:68353829-68353848 | None:intergenic | 45.0% | |
| GTTAACGTTCAGCCTTACTC+TGG | - | chr4_2:68353841-68353860 | Msa0617690:CDS | 45.0% | |
| ATCATGAGGATTAAGCACGG+CGG | + | chr4_2:68353893-68353912 | None:intergenic | 45.0% | |
| CCGATCATGAGGATTAAGCA+CGG | + | chr4_2:68353896-68353915 | None:intergenic | 45.0% | |
| CCGTGCTTAATCCTCATGAT+CGG | - | chr4_2:68353893-68353912 | Msa0617690:CDS | 45.0% | |
| ATGGGATTGGATCTTCCTTC+AGG | - | chr4_2:68353919-68353938 | Msa0617690:intron | 45.0% | |
| TGAGTCAAATGTCCACCTGA+AGG | + | chr4_2:68353937-68353956 | None:intergenic | 45.0% | |
| TCAGGTGGACATTTGACTCA+TGG | - | chr4_2:68353937-68353956 | Msa0617690:intron | 45.0% | |
| TTCTGGTGGGAAGAAGATCT+CGG | - | chr4_2:68353969-68353988 | Msa0617690:intron | 45.0% | |
| !!! | AAGCGTTGGATTTTAGGCCT+AGG | - | chr4_2:68354073-68354092 | Msa0617690:intron | 45.0% |
| !! | AGGCCTAGGTTGATTATCTG+TGG | - | chr4_2:68354087-68354106 | Msa0617690:intron | 45.0% |
| CCACCACAGATAATCAACCT+AGG | + | chr4_2:68354093-68354112 | None:intergenic | 45.0% | |
| !! | CCTAGGTTGATTATCTGTGG+TGG | - | chr4_2:68354090-68354109 | Msa0617690:intron | 45.0% |
| TAGTGCTTACCCTAGGGATT+GGG | - | chr4_2:68354113-68354132 | Msa0617690:intron | 45.0% | |
| AGGGATGTTGCTGATAAGTG+TGG | - | chr4_2:68354150-68354169 | Msa0617690:intron | 45.0% | |
| TCGAACCCCAGACAAATGAA+TGG | - | chr4_2:68354748-68354767 | Msa0617690:CDS | 45.0% | |
| CGAACCCCAGACAAATGAAT+GGG | - | chr4_2:68354749-68354768 | Msa0617690:CDS | 45.0% | |
| ! | GGCTTTATAAGCTCCCATCA+TGG | - | chr4_2:68354770-68354789 | Msa0617690:CDS | 45.0% |
| ! | TATTTAGGGCCCGTTTGGAT+TGG | - | chr4_2:68354886-68354905 | Msa0617690:intron | 45.0% |
| ATACTATGGCCCGTTTGGAT+TGG | + | chr4_2:68355086-68355105 | None:intergenic | 45.0% | |
| TAGAAGATCATTCCAGCCCT+AGG | + | chr4_2:68355359-68355378 | None:intergenic | 45.0% | |
| ATTGTGAGGACCACCTTGAA+GGG | + | chr4_2:68355471-68355490 | None:intergenic | 45.0% | |
| CTGTTTCAAGGCAACAGCAA+GGG | + | chr4_2:68355507-68355526 | None:intergenic | 45.0% | |
| GGCATATGCCAAGCAAGTTA+AGG | - | chr4_2:68355547-68355566 | Msa0617690:intron | 45.0% | |
| !! | TGCATTGGCCTTAACTTGCT+TGG | + | chr4_2:68355558-68355577 | None:intergenic | 45.0% |
| ! | AAGGGATACAGTCTTGTCAC+TGG | - | chr4_2:68355605-68355624 | Msa0617690:intron | 45.0% |
| CTGAGAACCATCTTGTGTTG+TGG | - | chr4_2:68355633-68355652 | Msa0617690:intron | 45.0% | |
| GAAGATCCCACAACACAAGA+TGG | + | chr4_2:68355643-68355662 | None:intergenic | 45.0% | |
| CCTTTACCAGTCAATCCAAG+AGG | + | chr4_2:68355668-68355687 | None:intergenic | 45.0% | |
| CCTCTTGGATTGACTGGTAA+AGG | - | chr4_2:68355665-68355684 | Msa0617690:intron | 45.0% | |
| GTTCTTTGCAGGAAACAAGG+TGG | - | chr4_2:68355762-68355781 | Msa0617690:intron | 45.0% | |
| CTGACTGGAGTTCTGTTAAC+AGG | - | chr4_2:68356193-68356212 | Msa0617690:CDS | 45.0% | |
| AGTTCTGTTAACAGGTGCTC+CGG | - | chr4_2:68356201-68356220 | Msa0617690:CDS | 45.0% | |
| ! | AACCAAGCCTCTAGAAGTCA+TGG | + | chr4_2:68356227-68356246 | None:intergenic | 45.0% |
| ACTCACACTAGAGATCCAGA+AGG | - | chr4_2:68356294-68356313 | Msa0617690:CDS | 45.0% | |
| ! | GAAGTTTTCCATGCTCCTTC+TGG | + | chr4_2:68356312-68356331 | None:intergenic | 45.0% |
| GGAGCATGGAAAACTTCTGA+AGG | - | chr4_2:68356315-68356334 | Msa0617690:CDS | 45.0% | |
| GAAGGATTTCAACAAGGGCT+TGG | - | chr4_2:68356333-68356352 | Msa0617690:CDS | 45.0% | |
| ATTTGGTATGCCTGGTTTCC+TGG | - | chr4_2:68356411-68356430 | Msa0617690:CDS | 45.0% | |
| ATCTCAGATACCAGGAAACC+AGG | + | chr4_2:68356424-68356443 | None:intergenic | 45.0% | |
| GTGAGACGTTGGATTTGAGA+GGG | + | chr4_2:68356467-68356486 | None:intergenic | 45.0% | |
| AGTGAGACGTTGGATTTGAG+AGG | + | chr4_2:68356468-68356487 | None:intergenic | 45.0% | |
| !!! | ATTTTTTTTTTTTTTTTTTG+TGG | - | chr4_2:68354715-68354734 | Msa0617690:CDS | 5.0% |
| TGTGGCCGTTGCTTAATCGT+TGG | + | chr4_2:68353400-68353419 | None:intergenic | 50.0% | |
| CGATTAGGTCGTGGATCTCT+GGG | + | chr4_2:68353597-68353616 | None:intergenic | 50.0% | |
| TCGATTAGGTCGTGGATCTC+TGG | + | chr4_2:68353598-68353617 | None:intergenic | 50.0% | |
| GAAAAACGTCGTCAATGCCG+CGG | - | chr4_2:68353622-68353641 | Msa0617690:three_prime_UTR | 50.0% | |
| ATGCGATGAGTTCGATTCCG+CGG | + | chr4_2:68353642-68353661 | None:intergenic | 50.0% | |
| CGGAATCGAACTCATCGCAT+CGG | - | chr4_2:68353642-68353661 | Msa0617690:three_prime_UTR | 50.0% | |
| ! | CAAATACTCCGAAGGCATGC+CGG | - | chr4_2:68353717-68353736 | Msa0617690:CDS | 50.0% |
| ! | AAATACTCCGAAGGCATGCC+GGG | - | chr4_2:68353718-68353737 | Msa0617690:CDS | 50.0% |
| ATGCCGGGTAACCGTTACTA+CGG | - | chr4_2:68353733-68353752 | Msa0617690:CDS | 50.0% | |
| ! | AAGCTTGAAGAGCGCGTGAA+CGG | + | chr4_2:68353795-68353814 | None:intergenic | 50.0% |
| ! | TCAGCCTTACTCTGGTTCAC+CGG | - | chr4_2:68353849-68353868 | Msa0617690:CDS | 50.0% |
| GTGTAAGCAGCGAAATTCGC+CGG | + | chr4_2:68353871-68353890 | None:intergenic | 50.0% | |
| GGATTGGATCTTCCTTCAGG+TGG | - | chr4_2:68353922-68353941 | Msa0617690:intron | 50.0% | |
| ! | TAGGTTGGAGGAGAAAGCGT+TGG | - | chr4_2:68354059-68354078 | Msa0617690:intron | 50.0% |
| ! | TGGTGGTAGTGCTTACCCTA+GGG | - | chr4_2:68354107-68354126 | Msa0617690:intron | 50.0% |
| GTAGTGCTTACCCTAGGGAT+TGG | - | chr4_2:68354112-68354131 | Msa0617690:intron | 50.0% | |
| TCCCATCATGGCTCAATGTG+TGG | - | chr4_2:68354782-68354801 | Msa0617690:CDS | 50.0% | |
| CCCACACATTGAGCCATGAT+GGG | + | chr4_2:68354786-68354805 | None:intergenic | 50.0% | |
| CCCATCATGGCTCAATGTGT+GGG | - | chr4_2:68354783-68354802 | Msa0617690:CDS | 50.0% | |
| ACCCACACATTGAGCCATGA+TGG | + | chr4_2:68354787-68354806 | None:intergenic | 50.0% | |
| ACAAGAGTTTGAGGGGTCCT+AGG | - | chr4_2:68355339-68355358 | Msa0617690:intron | 50.0% | |
| CAAGAGTTTGAGGGGTCCTA+GGG | - | chr4_2:68355340-68355359 | Msa0617690:intron | 50.0% | |
| GGGCTGGAATGATCTTCTAC+AGG | - | chr4_2:68355360-68355379 | Msa0617690:intron | 50.0% | |
| GGACCTAAACCACCCAAGAA+GGG | - | chr4_2:68355386-68355405 | Msa0617690:intron | 50.0% | |
| CGTAAACTGCATTCTCAGGC+TGG | + | chr4_2:68355412-68355431 | None:intergenic | 50.0% | |
| ! | GCAGTTTTCCCTTCCCTTCA+AGG | - | chr4_2:68355455-68355474 | Msa0617690:intron | 50.0% |
| ! | GTTTTCCCTTCCCTTCAAGG+TGG | - | chr4_2:68355458-68355477 | Msa0617690:intron | 50.0% |
| GATTGTGAGGACCACCTTGA+AGG | + | chr4_2:68355472-68355491 | None:intergenic | 50.0% | |
| GGTCCTCACAATCACCAGAT+TGG | - | chr4_2:68355479-68355498 | Msa0617690:intron | 50.0% | |
| GCACCAATCTGGTGATTGTG+AGG | + | chr4_2:68355485-68355504 | None:intergenic | 50.0% | |
| CCTGTTTCAAGGCAACAGCA+AGG | + | chr4_2:68355508-68355527 | None:intergenic | 50.0% | |
| !! | CCTTGCTGTTGCCTTGAAAC+AGG | - | chr4_2:68355505-68355524 | Msa0617690:intron | 50.0% |
| AGGTGACATGGCCTGTTTCA+AGG | + | chr4_2:68355519-68355538 | None:intergenic | 50.0% | |
| TTGAAACAGGCCATGTCACC+TGG | - | chr4_2:68355518-68355537 | Msa0617690:intron | 50.0% | |
| TGAAACAGGCCATGTCACCT+GGG | - | chr4_2:68355519-68355538 | Msa0617690:intron | 50.0% | |
| TTGGCATATGCCTTGAACCC+AGG | + | chr4_2:68355539-68355558 | None:intergenic | 50.0% | |
| AAGGCCAATGCAGTTGCCAT+TGG | - | chr4_2:68355566-68355585 | Msa0617690:intron | 50.0% | |
| ! | GGATACAGTCTTGTCACTGG+TGG | - | chr4_2:68355608-68355627 | Msa0617690:intron | 50.0% |
| CGCGGTTTGATGTTCTTTGC+AGG | - | chr4_2:68355751-68355770 | Msa0617690:intron | 50.0% | |
| ! | TTTTGGCGATAGCAGTGCCT+TGG | - | chr4_2:68355831-68355850 | Msa0617690:intron | 50.0% |
| TTACCAACTCGTACTCCTCC+TGG | + | chr4_2:68355859-68355878 | None:intergenic | 50.0% | |
| ! | AAGCCTCTAGAAGTCATGGC+CGG | + | chr4_2:68356223-68356242 | None:intergenic | 50.0% |
| CTAGTGTGAGTGTCACAGCA+CGG | + | chr4_2:68356285-68356304 | None:intergenic | 50.0% | |
| CTAGAGATCCAGAAGGAGCA+TGG | - | chr4_2:68356301-68356320 | Msa0617690:CDS | 50.0% | |
| GGATTTCAACAAGGGCTTGG+TGG | - | chr4_2:68356336-68356355 | Msa0617690:CDS | 50.0% | |
| TTCGCCGTCATCGAAGCTCT+CGG | - | chr4_2:68353679-68353698 | Msa0617690:CDS | 55.0% | |
| CCACCGTAGTAACGGTTACC+CGG | + | chr4_2:68353739-68353758 | None:intergenic | 55.0% | |
| TTCGCCGGTGAACCAGAGTA+AGG | + | chr4_2:68353856-68353875 | None:intergenic | 55.0% | |
| ! | GTGGTGGTAGTGCTTACCCT+AGG | - | chr4_2:68354106-68354125 | Msa0617690:intron | 55.0% |
| !! | TAGTGGCCTTGTTGCTGCTC+AGG | - | chr4_2:68354203-68354222 | Msa0617690:intron | 55.0% |
| !! | AATGTCGGGGGCACTGGTTA+AGG | + | chr4_2:68354420-68354439 | None:intergenic | 55.0% |
| ! | TTTGTCTGGGGTTCGAACCC+CGG | + | chr4_2:68354744-68354763 | None:intergenic | 55.0% |
| GGGACCTAAACCACCCAAGA+AGG | - | chr4_2:68355385-68355404 | Msa0617690:intron | 55.0% | |
| TGGCCCTTCTTGGGTGGTTT+AGG | + | chr4_2:68355392-68355411 | None:intergenic | 55.0% | |
| ! | TTCTCAGGCTGGCCCTTCTT+GGG | + | chr4_2:68355401-68355420 | None:intergenic | 55.0% |
| ! | ATTCTCAGGCTGGCCCTTCT+TGG | + | chr4_2:68355402-68355421 | None:intergenic | 55.0% |
| GAGGACCACCTTGAAGGGAA+GGG | + | chr4_2:68355466-68355485 | None:intergenic | 55.0% | |
| TGAGGACCACCTTGAAGGGA+AGG | + | chr4_2:68355467-68355486 | None:intergenic | 55.0% | |
| !! | CAACAGCAAGGGCACCAATC+TGG | + | chr4_2:68355496-68355515 | None:intergenic | 55.0% |
| TGCCTTGAACCCAGGTGACA+TGG | + | chr4_2:68355531-68355550 | None:intergenic | 55.0% | |
| TTGTGGGATCTTCGCCCTCT+TGG | - | chr4_2:68355650-68355669 | Msa0617690:intron | 55.0% | |
| CTTCGCCCTCTTGGATTGAC+TGG | - | chr4_2:68355659-68355678 | Msa0617690:intron | 55.0% | |
| ! | GGCCATGACTTCTAGAGGCT+TGG | - | chr4_2:68356222-68356241 | Msa0617690:CDS | 55.0% |
| TGAGTGTCACAGCACGGTGA+AGG | + | chr4_2:68356279-68356298 | None:intergenic | 55.0% | |
| !! | CAAGGGCTTGGTGGACAACA+AGG | - | chr4_2:68356345-68356364 | Msa0617690:CDS | 55.0% |
| TCTGGGTCGACGGTTACGAG+TGG | + | chr4_2:68353580-68353599 | None:intergenic | 60.0% | |
| GTCGTGGATCTCTGGGTCGA+CGG | + | chr4_2:68353590-68353609 | None:intergenic | 60.0% | |
| ! | GAGAGCTTCGATGACGGCGA+AGG | + | chr4_2:68353680-68353699 | None:intergenic | 60.0% |
| GCTGCCGAGAGCTTCGATGA+CGG | + | chr4_2:68353686-68353705 | None:intergenic | 60.0% | |
| ACGGTTACCCGGCATGCCTT+CGG | + | chr4_2:68353728-68353747 | None:intergenic | 60.0% | |
| CCGGGTAACCGTTACTACGG+TGG | - | chr4_2:68353736-68353755 | Msa0617690:CDS | 60.0% | |
| ! | AAGGGAAATGTCGGGGGCAC+TGG | + | chr4_2:68354426-68354445 | None:intergenic | 60.0% |
| AGTTTGAGGGGTCCTAGGGC+TGG | - | chr4_2:68355344-68355363 | Msa0617690:intron | 60.0% | |
| GGCCATGTCACCTGGGTTCA+AGG | - | chr4_2:68355526-68355545 | Msa0617690:intron | 60.0% | |
| GATAGCAGTGCCTTGGCTCC+AGG | - | chr4_2:68355838-68355857 | Msa0617690:intron | 60.0% | |
| TCGTACTCCTCCTGGAGCCA+AGG | + | chr4_2:68355851-68355870 | None:intergenic | 60.0% | |
| ! | GCTCCAGGAGGAGTACGAGT+TGG | - | chr4_2:68355853-68355872 | Msa0617690:intron | 60.0% |
| GCTCCGGCCATGACTTCTAG+AGG | - | chr4_2:68356217-68356236 | Msa0617690:CDS | 60.0% | |
| ! | TCAGGCTGGCCCTTCTTGGG+TGG | + | chr4_2:68355398-68355417 | None:intergenic | 65.0% |
| AGCAGTGCCTTGGCTCCAGG+AGG | - | chr4_2:68355841-68355860 | Msa0617690:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 68353342 | 68356787 | 68353342 | ID=Msa0617690;Name=Msa0617690 |
| chr4_2 | mRNA | 68353342 | 68356787 | 68353342 | ID=Msa0617690-mRNA-1;Parent=Msa0617690;Name=Msa0617690-mRNA-1;_AED=0.01;_eAED=0.01;_QI=205|1|1|1|1|1|4|328|471 |
| chr4_2 | exon | 68353342 | 68353914 | 68353342 | ID=Msa0617690-mRNA-1:exon:19620;Parent=Msa0617690-mRNA-1 |
| chr4_2 | exon | 68354255 | 68354356 | 68354255 | ID=Msa0617690-mRNA-1:exon:19619;Parent=Msa0617690-mRNA-1 |
| chr4_2 | exon | 68354449 | 68354839 | 68354449 | ID=Msa0617690-mRNA-1:exon:19618;Parent=Msa0617690-mRNA-1 |
| chr4_2 | exon | 68355905 | 68356787 | 68355905 | ID=Msa0617690-mRNA-1:exon:19617;Parent=Msa0617690-mRNA-1 |
| chr4_2 | five_prime_UTR | 68356583 | 68356787 | 68356583 | ID=Msa0617690-mRNA-1:five_prime_utr;Parent=Msa0617690-mRNA-1 |
| chr4_2 | CDS | 68355905 | 68356582 | 68355905 | ID=Msa0617690-mRNA-1:cds;Parent=Msa0617690-mRNA-1 |
| chr4_2 | CDS | 68354449 | 68354839 | 68354449 | ID=Msa0617690-mRNA-1:cds;Parent=Msa0617690-mRNA-1 |
| chr4_2 | CDS | 68354255 | 68354356 | 68354255 | ID=Msa0617690-mRNA-1:cds;Parent=Msa0617690-mRNA-1 |
| chr4_2 | CDS | 68353670 | 68353914 | 68353670 | ID=Msa0617690-mRNA-1:cds;Parent=Msa0617690-mRNA-1 |
| chr4_2 | three_prime_UTR | 68353342 | 68353669 | 68353342 | ID=Msa0617690-mRNA-1:three_prime_utr;Parent=Msa0617690-mRNA-1 |
| Gene Sequence |
| Protein sequence |
