Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701040 | XP_003629745.1 | 95.349 | 301 | 3 | 1 | 1 | 290 | 1 | 301 | 0.0 | 580 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701040 | sp|Q9C5M0|DTC_ARATH | 80.399 | 301 | 45 | 3 | 1 | 290 | 1 | 298 | 2.09e-178 | 496 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701040 | G7LIP6 | 95.349 | 301 | 3 | 1 | 1 | 290 | 1 | 301 | 0.0 | 580 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0075740 | Msa0701040 | -0.803911 | 2.780289e-49 | -8.615850e-47 |
| Msa0075750 | Msa0701040 | -0.808525 | 2.967803e-50 | -8.615850e-47 |
| Msa0093950 | Msa0701040 | 0.818901 | 1.538585e-52 | -8.615850e-47 |
| Msa0108490 | Msa0701040 | 0.801005 | 1.104405e-48 | -8.615850e-47 |
| Msa0617690 | Msa0701040 | 0.831088 | 2.035126e-55 | -8.615850e-47 |
| Msa0618020 | Msa0701040 | 0.982423 | 4.706585e-155 | -8.615850e-47 |
| Msa0652270 | Msa0701040 | 0.863396 | 2.565993e-64 | -8.615850e-47 |
| Msa0653540 | Msa0701040 | -0.811418 | 7.071977e-51 | -8.615850e-47 |
| Msa0657060 | Msa0701040 | 0.971626 | 1.846770e-133 | -8.615850e-47 |
| Msa0694810 | Msa0701040 | 0.821830 | 3.277821e-53 | -8.615850e-47 |
| Msa0701040 | Msa0713900 | 0.805384 | 1.370344e-49 | -8.615850e-47 |
| Msa0701040 | Msa0756160 | 0.832709 | 8.098321e-56 | -8.615850e-47 |
| Msa0701040 | Msa0835180 | 0.816866 | 4.433656e-52 | -8.615850e-47 |
| Msa0701040 | Msa0931410 | 0.819249 | 1.282451e-52 | -8.615850e-47 |
| Msa0701040 | Msa1035850 | -0.808435 | 3.101495e-50 | -8.615850e-47 |
| Msa0701040 | Msa1044520 | 0.833077 | 6.561439e-56 | -8.615850e-47 |
| Msa0701040 | Msa1049030 | 0.814973 | 1.172612e-51 | -8.615850e-47 |
| Msa0701040 | Msa1087400 | 0.816647 | 4.964913e-52 | -8.615850e-47 |
| Msa0701040 | Msa1221780 | 0.829784 | 4.239868e-55 | -8.615850e-47 |
| Msa0701040 | Msa1264300 | 0.820553 | 6.456047e-53 | -8.615850e-47 |
| Msa0701040 | Msa1333900 | 0.810692 | 1.015679e-50 | -8.615850e-47 |
| Msa0701040 | Msa1334350 | 0.816122 | 6.507795e-52 | -8.615850e-47 |
| Msa0701040 | Msa1402340 | 0.816267 | 6.040338e-52 | -8.615850e-47 |
| Msa0701040 | Msa1455330 | -0.806055 | 9.905086e-50 | -8.615850e-47 |
| Msa0178840 | Msa0701040 | 0.824325 | 8.582521e-54 | -8.615850e-47 |
| Msa0235970 | Msa0701040 | 0.847364 | 1.211893e-59 | -8.615850e-47 |
| Msa0374300 | Msa0701040 | 0.838791 | 2.331491e-57 | -8.615850e-47 |
| Msa0424940 | Msa0701040 | 0.806153 | 9.444667e-50 | -8.615850e-47 |
| Msa0469700 | Msa0701040 | 0.822226 | 2.652502e-53 | -8.615850e-47 |
| Msa0321140 | Msa0701040 | -0.807595 | 4.680695e-50 | -8.615850e-47 |
| Msa0515530 | Msa0701040 | 0.808981 | 2.371253e-50 | -8.615850e-47 |
| Msa0515580 | Msa0701040 | 0.808415 | 3.131973e-50 | -8.615850e-47 |
| Msa0548650 | Msa0701040 | 0.813021 | 3.160149e-51 | -8.615850e-47 |
| Msa0552090 | Msa0701040 | 0.807628 | 4.606356e-50 | -8.615850e-47 |
| Msa0556690 | Msa0701040 | 0.841373 | 4.943750e-58 | -8.615850e-47 |
| Msa0564920 | Msa0701040 | 0.947309 | 8.635212e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701040 | MtrunA17_Chr8g0378951 | 95.349 | 301 | 3 | 1 | 1 | 290 | 1 | 301 | 0.0 | 580 |
| Msa0701040 | MtrunA17_Chr5g0412401 | 36.420 | 324 | 149 | 5 | 18 | 288 | 3 | 322 | 4.64e-56 | 183 |
| Msa0701040 | MtrunA17_Chr3g0133111 | 35.535 | 318 | 151 | 7 | 18 | 288 | 3 | 313 | 9.71e-53 | 174 |
| Msa0701040 | MtrunA17_Chr8g0367641 | 37.188 | 320 | 145 | 7 | 18 | 288 | 3 | 315 | 4.40e-52 | 173 |
| Msa0701040 | MtrunA17_Chr1g0196921 | 32.143 | 280 | 165 | 7 | 27 | 284 | 20 | 296 | 1.22e-34 | 127 |
| Msa0701040 | MtrunA17_Chr7g0241521 | 31.667 | 300 | 159 | 8 | 21 | 286 | 13 | 300 | 1.64e-34 | 127 |
| Msa0701040 | MtrunA17_Chr4g0008061 | 31.438 | 299 | 170 | 7 | 14 | 287 | 11 | 299 | 6.67e-34 | 125 |
| Msa0701040 | MtrunA17_Chr8g0379131 | 63.014 | 73 | 27 | 0 | 201 | 273 | 28 | 100 | 1.76e-26 | 100 |
| Msa0701040 | MtrunA17_Chr8g0378971 | 72.131 | 61 | 17 | 0 | 223 | 283 | 3 | 63 | 6.83e-26 | 97.4 |
| Msa0701040 | MtrunA17_Chr3g0103681 | 26.978 | 278 | 169 | 5 | 33 | 284 | 28 | 297 | 5.38e-19 | 85.1 |
| Msa0701040 | MtrunA17_Chr4g0004571 | 26.820 | 261 | 165 | 8 | 14 | 252 | 3 | 259 | 4.19e-18 | 82.8 |
| Msa0701040 | MtrunA17_Chr4g0028531 | 25.926 | 297 | 191 | 12 | 17 | 288 | 15 | 307 | 9.79e-15 | 73.2 |
| Msa0701040 | MtrunA17_Chr7g0252401 | 25.806 | 279 | 183 | 8 | 21 | 283 | 207 | 477 | 2.16e-13 | 70.1 |
| Msa0701040 | MtrunA17_Chr3g0131501 | 23.929 | 280 | 194 | 8 | 19 | 283 | 203 | 478 | 2.16e-12 | 67.0 |
| Msa0701040 | MtrunA17_Chr1g0196161 | 26.437 | 174 | 119 | 5 | 118 | 284 | 3 | 174 | 2.16e-12 | 64.3 |
| Msa0701040 | MtrunA17_Chr6g0463351 | 30.328 | 122 | 84 | 1 | 20 | 140 | 159 | 280 | 5.32e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0701040 | AT5G19760.1 | 80.399 | 301 | 45 | 3 | 1 | 290 | 1 | 298 | 2.12e-179 | 496 |
| Msa0701040 | AT4G24570.1 | 37.304 | 319 | 144 | 8 | 18 | 288 | 3 | 313 | 1.20e-55 | 182 |
| Msa0701040 | AT2G22500.1 | 36.709 | 316 | 148 | 8 | 18 | 288 | 3 | 311 | 5.49e-49 | 165 |
| Msa0701040 | AT5G09470.1 | 35.766 | 274 | 151 | 6 | 33 | 287 | 67 | 334 | 1.27e-40 | 144 |
| Msa0701040 | AT1G14140.1 | 33.333 | 294 | 166 | 8 | 16 | 284 | 11 | 299 | 1.60e-34 | 127 |
| Msa0701040 | AT5G58970.1 | 29.966 | 297 | 166 | 6 | 18 | 284 | 13 | 297 | 3.16e-34 | 126 |
| Msa0701040 | AT3G54110.1 | 32.971 | 276 | 154 | 7 | 32 | 283 | 27 | 295 | 2.18e-33 | 124 |
| Msa0701040 | AT4G03115.1 | 29.730 | 296 | 191 | 11 | 2 | 284 | 17 | 308 | 1.32e-27 | 109 |
| Msa0701040 | AT4G03115.3 | 29.730 | 296 | 191 | 11 | 2 | 284 | 49 | 340 | 2.26e-27 | 109 |
| Msa0701040 | AT5G58970.2 | 29.876 | 241 | 134 | 5 | 18 | 228 | 13 | 248 | 1.26e-25 | 102 |
| Msa0701040 | AT4G03115.5 | 28.696 | 230 | 156 | 7 | 59 | 284 | 12 | 237 | 6.75e-21 | 89.7 |
| Msa0701040 | AT4G03115.6 | 28.696 | 230 | 156 | 7 | 59 | 284 | 20 | 245 | 8.07e-21 | 89.7 |
| Msa0701040 | AT5G01340.1 | 26.502 | 283 | 186 | 8 | 22 | 284 | 18 | 298 | 1.04e-16 | 79.3 |
| Msa0701040 | AT4G03115.2 | 31.553 | 206 | 126 | 9 | 2 | 195 | 17 | 219 | 1.79e-15 | 74.3 |
| Msa0701040 | AT4G03115.4 | 31.553 | 206 | 126 | 9 | 2 | 195 | 17 | 219 | 2.07e-15 | 74.3 |
| Msa0701040 | AT1G79900.1 | 27.848 | 237 | 148 | 8 | 37 | 260 | 32 | 258 | 5.46e-11 | 62.4 |
Find 100 sgRNAs with CRISPR-Local
Find 295 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCTGTTGCTGCTGGTTTC+TGG | 0.111154 | 4_4:+72284368 | Msa0701040:CDS |
| CCTCAACCAGCTCCAGAAAT+TGG | 0.196597 | 4_4:+72288538 | Msa0701040:CDS |
| GGAGAAAAGTTATGGGTTAT+AGG | 0.255079 | 4_4:+72288559 | Msa0701040:CDS |
| TTCGTCAATGGTGGTGCTTC+TGG | 0.275917 | 4_4:+72284406 | Msa0701040:CDS |
| TTAGGTGCAAGTAGTGTATC+TGG | 0.278521 | 4_4:+72288194 | Msa0701040:intron |
| CAGAAATTGGAGAAAAGTTA+TGG | 0.301655 | 4_4:+72288551 | Msa0701040:CDS |
| TTCTTGCAGGGTCTATCAGC+TGG | 0.316238 | 4_4:+72284963 | Msa0701040:intron |
| AGTTGGTAGTCCAGCTGATT+TGG | 0.324876 | 4_4:+72285430 | Msa0701040:CDS |
| GGGCTGACTGCTGGTGCAAT+TGG | 0.358637 | 4_4:+72285401 | Msa0701040:CDS |
| AAACTACACAAACGCCTTCC+AGG | 0.363434 | 4_4:+72285502 | Msa0701040:CDS |
| GGGTGTTGGTGCTTTCTATA+AGG | 0.363669 | 4_4:+72284643 | Msa0701040:CDS |
| CTGCACGCCTTGGAACATTT+AGG | 0.364412 | 4_4:+72285012 | Msa0701040:CDS |
| TGGCAGGGGCTTGCCATCAT+TGG | 0.380343 | 4_4:-72285357 | None:intergenic |
| GGAAGGCGTTTGTGTAGTTT+CGG | 0.380503 | 4_4:-72285499 | None:intergenic |
| CCAATTTCTGGAGCTGGTTG+AGG | 0.389193 | 4_4:-72288538 | None:intergenic |
| TTCTTCTCGTCTCCCATTGT+TGG | 0.393560 | 4_4:-72284340 | None:intergenic |
| AATTCAGGTTAGGATTCAAC+TGG | 0.396885 | 4_4:+72284574 | Msa0701040:intron |
| GAAGGGTCCTCCAGATTTGA+AGG | 0.417928 | 4_4:-72288336 | None:intergenic |
| TTGAGCATTGAATAATTTGT+TGG | 0.423699 | 4_4:+72288616 | Msa0701040:three_prime_UTR |
| AGAAATTGGAGAAAAGTTAT+GGG | 0.426080 | 4_4:+72288552 | Msa0701040:CDS |
| ACCATTGACGAAAGGCTTGA+TGG | 0.428395 | 4_4:-72284395 | None:intergenic |
| GCTGTCAAGACCTTCAAATC+TGG | 0.432966 | 4_4:+72288326 | Msa0701040:CDS |
| CAGTCAAGAGAGCCGGTGTA+TGG | 0.437255 | 4_4:-72288302 | None:intergenic |
| GGCCAGAAACCAGCAGCAAC+AGG | 0.443267 | 4_4:-72284370 | None:intergenic |
| CATACCTTGATCATATCAAT+AGG | 0.451587 | 4_4:-72284454 | None:intergenic |
| TGAGTCTTCACATAATCAAA+TGG | 0.453835 | 4_4:-72288242 | None:intergenic |
| ACCATCAAGCCTTTCGTCAA+TGG | 0.457555 | 4_4:+72284394 | Msa0701040:CDS |
| CACCGATACGGTAAAGTGCC+TGG | 0.473291 | 4_4:-72285520 | None:intergenic |
| TCAAAGTGTTGAGTTCTTCA+AGG | 0.476440 | 4_4:+72285634 | Msa0701040:CDS |
| TTCAAGGATACCGTTGGTCT+AGG | 0.476717 | 4_4:+72285650 | Msa0701040:CDS |
| GTCTATCAGCTGGGTTACTC+AGG | 0.478134 | 4_4:+72284973 | Msa0701040:CDS |
| GATTCCCTGTCTACTGTGTC+AGG | 0.479793 | 4_4:+72288372 | Msa0701040:CDS |
| TTTCACTGTGGAAAGGTGCT+GGG | 0.480851 | 4_4:+72285558 | Msa0701040:intron |
| TCAACCTATTGATATGATCA+AGG | 0.487786 | 4_4:+72284450 | Msa0701040:CDS |
| AAGCCTAAGCCTGTTGCTGC+TGG | 0.491227 | 4_4:+72284361 | Msa0701040:CDS |
| AAACAAGGAAAACAATGAAA+AGG | 0.495989 | 4_4:-72284118 | None:intergenic |
| TTCTACCATGCTTAAGAATG+AGG | 0.497892 | 4_4:+72284622 | Msa0701040:CDS |
| CTTGACAAATAAAGCAATTG+AGG | 0.499499 | 4_4:+72285334 | Msa0701040:CDS |
| ACTTACACCACTGCACGCCT+TGG | 0.499902 | 4_4:+72285002 | Msa0701040:CDS |
| TTTGGCACTCATTCGTATGC+AGG | 0.500271 | 4_4:+72285448 | Msa0701040:CDS |
| GACACAGTAGACAGGGAATC+CGG | 0.501193 | 4_4:-72288369 | None:intergenic |
| AAGAGCCATGGCATTGAACA+TGG | 0.503929 | 4_4:+72285592 | Msa0701040:CDS |
| GAATCCGGTGTAAAATTTGA+AGG | 0.507310 | 4_4:-72288354 | None:intergenic |
| GCAATCCTGACACAGTAGAC+AGG | 0.508794 | 4_4:-72288377 | None:intergenic |
| ATCAGCTGGGTTACTCAGGC+AGG | 0.514032 | 4_4:+72284977 | Msa0701040:CDS |
| GCTCTATGTGGGCTGACTGC+TGG | 0.520808 | 4_4:+72285392 | Msa0701040:CDS |
| CGAATGAGTGCCAAATCAGC+TGG | 0.523817 | 4_4:-72285440 | None:intergenic |
| ATTAGTCATGCAATTCAAGC+GGG | 0.524365 | 4_4:+72288704 | Msa0701040:three_prime_UTR |
| AAAGCAATTGAGGCCAATGA+TGG | 0.524756 | 4_4:+72285344 | Msa0701040:CDS |
| TTCCAGGCACTTTACCGTAT+CGG | 0.534625 | 4_4:+72285518 | Msa0701040:CDS |
| ACTTCGCTAATACCAACAAT+GGG | 0.536551 | 4_4:+72284328 | Msa0701040:exon |
| TCTTGCAGGGTCTATCAGCT+GGG | 0.537823 | 4_4:+72284964 | Msa0701040:intron |
| CAGGATTGCTCCCCATGTCA+TGG | 0.543518 | 4_4:+72288391 | Msa0701040:CDS |
| TCCCTTCATCTGCACCGATA+CGG | 0.543890 | 4_4:-72285532 | None:intergenic |
| AAGTTATGGGTTATAGGTGA+TGG | 0.547875 | 4_4:+72288565 | Msa0701040:exon |
| AAACCAGCAGCAACAGGCTT+AGG | 0.550180 | 4_4:-72284364 | None:intergenic |
| TTGACGAAAGGCTTGATGGT+TGG | 0.552826 | 4_4:-72284391 | None:intergenic |
| AACTTCGCTAATACCAACAA+TGG | 0.553022 | 4_4:+72284327 | Msa0701040:exon |
| CATCCCCATGTTCAATGCCA+TGG | 0.555090 | 4_4:-72285597 | None:intergenic |
| ACTGCTTATGGCAGATGACA+TGG | 0.559975 | 4_4:+72288510 | Msa0701040:intron |
| GTTAGGATTCAACTGGGTCA+AGG | 0.566704 | 4_4:+72284581 | Msa0701040:CDS |
| GAGTTCTTCAAGGATACCGT+TGG | 0.572249 | 4_4:+72285644 | Msa0701040:CDS |
| GACAGCACAGTCAAGAGAGC+CGG | 0.574269 | 4_4:-72288309 | None:intergenic |
| TCTTCTTAACCCAACAAACA+AGG | 0.579884 | 4_4:-72284133 | None:intergenic |
| AAAGATGCAACCTGATGCTG+AGG | 0.582204 | 4_4:+72288271 | Msa0701040:CDS |
| TAGTTTCGGCGCTGAGCAAG+AGG | 0.584237 | 4_4:-72285485 | None:intergenic |
| TATGATATGATATGATGCGT+TGG | 0.588193 | 4_4:+72288767 | Msa0701040:three_prime_UTR |
| ATCAATAGGTTGAATAACAC+AGG | 0.588855 | 4_4:-72284440 | None:intergenic |
| GAAATGAAGCGAAGAAAACG+AGG | 0.590384 | 4_4:-72284297 | None:intergenic |
| AACACCCTCATTCTTAAGCA+TGG | 0.601421 | 4_4:-72284627 | None:intergenic |
| GTCAAGACCTTCAAATCTGG+AGG | 0.605904 | 4_4:+72288329 | Msa0701040:CDS |
| AAGAGAATAGTACCATGACA+TGG | 0.606457 | 4_4:-72288403 | None:intergenic |
| AGAGCCATGGCATTGAACAT+GGG | 0.610100 | 4_4:+72285593 | Msa0701040:CDS |
| AAATGTTCCAAGGCGTGCAG+TGG | 0.610327 | 4_4:-72285009 | None:intergenic |
| GAGCCATGGCATTGAACATG+GGG | 0.612866 | 4_4:+72285594 | Msa0701040:CDS |
| ATCAAGCCTTTCGTCAATGG+TGG | 0.613468 | 4_4:+72284397 | Msa0701040:CDS |
| AGAGAATAGTACCATGACAT+GGG | 0.614065 | 4_4:-72288402 | None:intergenic |
| TCTACCATGCTTAAGAATGA+GGG | 0.614254 | 4_4:+72284623 | Msa0701040:CDS |
| AATTAGTCATGCAATTCAAG+CGG | 0.614528 | 4_4:+72288703 | Msa0701040:three_prime_UTR |
| AATCCGGTGTAAAATTTGAA+GGG | 0.616204 | 4_4:-72288353 | None:intergenic |
| CAATCCTGACACAGTAGACA+GGG | 0.622100 | 4_4:-72288376 | None:intergenic |
| CAACTCACCTAAATGTTCCA+AGG | 0.622902 | 4_4:-72285019 | None:intergenic |
| GGTGAAATGACTACTGTGGT+TGG | 0.629754 | 4_4:+72285671 | Msa0701040:CDS |
| GATACGGTAAAGTGCCTGGA+AGG | 0.630447 | 4_4:-72285516 | None:intergenic |
| GCCATGGCTCTTACTACAGT+AGG | 0.638558 | 4_4:-72285581 | None:intergenic |
| GAAGTGAAGAACGAATCTAG+TGG | 0.641926 | 4_4:-72284231 | None:intergenic |
| GCCTACTGTAGTAAGAGCCA+TGG | 0.642788 | 4_4:+72285580 | Msa0701040:CDS |
| GGTGCAATTGGAGCAACAGT+TGG | 0.654003 | 4_4:+72285413 | Msa0701040:CDS |
| GAAGCACCACCATTGACGAA+AGG | 0.656464 | 4_4:-72284403 | None:intergenic |
| ATTCAGGTTAGGATTCAACT+GGG | 0.656898 | 4_4:+72284575 | Msa0701040:intron |
| TGATGTCGAAAAGATGTCTG+AGG | 0.659552 | 4_4:-72288872 | None:intergenic |
| GAGGGAAAATATCCATACAC+CGG | 0.660454 | 4_4:+72288290 | Msa0701040:CDS |
| AGTCATTTCACCTAGACCAA+CGG | 0.665426 | 4_4:-72285660 | None:intergenic |
| TTAGTCATGCAATTCAAGCG+GGG | 0.668074 | 4_4:+72288705 | Msa0701040:three_prime_UTR |
| ATGTACAATATCAATGTGCG+AGG | 0.672660 | 4_4:+72288993 | Msa0701040:three_prime_UTR |
| ATGCTTAAGAATGAGGGTGT+TGG | 0.674370 | 4_4:+72284629 | Msa0701040:CDS |
| AAATGAAGCGAAGAAAACGA+GGG | 0.676255 | 4_4:-72284296 | None:intergenic |
| GAGAATAGTACCATGACATG+GGG | 0.680357 | 4_4:-72288401 | None:intergenic |
| AAGATGCAACCTGATGCTGA+GGG | 0.680874 | 4_4:+72288272 | Msa0701040:CDS |
| TCTAGGTGAAATGACTACTG+TGG | 0.723327 | 4_4:+72285667 | Msa0701040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATATTGTTTACTT+TGG | + | chr4_4:72284854-72284873 | Msa0701040:intron | 10.0% |
| !!! | ATTTATTCTTTTATAAAAAG+GGG | - | chr4_4:72285830-72285849 | None:intergenic | 10.0% |
| !!! | ATAAATTCATTTTTTTTAAC+TGG | + | chr4_4:72287335-72287354 | Msa0701040:intron | 10.0% |
| !!! | TAAATTCATTTTTTTTAACT+GGG | + | chr4_4:72287336-72287355 | Msa0701040:intron | 10.0% |
| !! | CAAAAAAAAAAAAAAAAGAT+AGG | - | chr4_4:72287528-72287547 | None:intergenic | 10.0% |
| !!! | AATTAGTCAAACTTTTTATT+AGG | + | chr4_4:72285847-72285866 | Msa0701040:intron | 15.0% |
| !! | TTCTGTTATCTATTAAAAAA+AGG | - | chr4_4:72286317-72286336 | None:intergenic | 15.0% |
| !!! | TTAATTTCAATTTTGTAACT+TGG | + | chr4_4:72286932-72286951 | Msa0701040:intron | 15.0% |
| !!! | TTTTTGCAGTATAATAAAAA+GGG | - | chr4_4:72288137-72288156 | None:intergenic | 15.0% |
| !!! | TTTTTTGCAGTATAATAAAA+AGG | - | chr4_4:72288138-72288157 | None:intergenic | 15.0% |
| !!! | TCTTTCATTTTTTGATGATT+TGG | + | chr4_4:72284495-72284514 | Msa0701040:intron | 20.0% |
| !!! | TTTTTTGATGATTTGGTATT+TGG | + | chr4_4:72284502-72284521 | Msa0701040:intron | 20.0% |
| !!! | TTTTTGATGATTTGGTATTT+GGG | + | chr4_4:72284503-72284522 | Msa0701040:intron | 20.0% |
| !!! | TGTTTTTTTGTTTTGAATTC+AGG | + | chr4_4:72284559-72284578 | Msa0701040:intron | 20.0% |
| !! | ATTTATTGAGTCATTGTATT+TGG | + | chr4_4:72284884-72284903 | Msa0701040:intron | 20.0% |
| !! | ATTGCAATATTCATCAAAAT+TGG | + | chr4_4:72285054-72285073 | Msa0701040:intron | 20.0% |
| !! | TAAAAACACAATGTAATTGT+AGG | - | chr4_4:72285160-72285179 | None:intergenic | 20.0% |
| !!! | ATAAAACATATCCTTTTGAA+TGG | - | chr4_4:72285205-72285224 | None:intergenic | 20.0% |
| !! | AAACTAACAACAGTATATTA+TGG | + | chr4_4:72286078-72286097 | Msa0701040:intron | 20.0% |
| !! | AACTAACAACAGTATATTAT+GGG | + | chr4_4:72286079-72286098 | Msa0701040:intron | 20.0% |
| !!! | AAGGTTTTGAAATCTAATAT+TGG | + | chr4_4:72286235-72286254 | Msa0701040:intron | 20.0% |
| !! | AAATCTAATATTGGATGATA+AGG | + | chr4_4:72286244-72286263 | Msa0701040:intron | 20.0% |
| !! | AATCTAATATTGGATGATAA+GGG | + | chr4_4:72286245-72286264 | Msa0701040:intron | 20.0% |
| !! | ATTTGATATGATGAATAAAG+GGG | - | chr4_4:72286403-72286422 | None:intergenic | 20.0% |
| !! | CATTTGATATGATGAATAAA+GGG | - | chr4_4:72286404-72286423 | None:intergenic | 20.0% |
| !! | TATTGTATTTACTAGCTAAT+TGG | + | chr4_4:72286457-72286476 | Msa0701040:intron | 20.0% |
| !! | AAGCTTAAATTAATCCAAAT+TGG | - | chr4_4:72286851-72286870 | None:intergenic | 20.0% |
| !!! | ATCTAAGTGTAATTTGTTAA+GGG | - | chr4_4:72287387-72287406 | None:intergenic | 20.0% |
| !! | GTGAAATTATAGTTTGATTA+AGG | - | chr4_4:72287735-72287754 | None:intergenic | 20.0% |
| !!! | ATTACCAATTTTCTTCTAAT+CGG | + | chr4_4:72288064-72288083 | Msa0701040:intron | 20.0% |
| !!! | ATTGATTTTTTTATTGCCTT+TGG | + | chr4_4:72288429-72288448 | Msa0701040:intron | 20.0% |
| !!! | TGATATCCAATTTTCAAAAA+GGG | - | chr4_4:72288653-72288672 | None:intergenic | 20.0% |
| !!! | TTGATATCCAATTTTCAAAA+AGG | - | chr4_4:72288654-72288673 | None:intergenic | 20.0% |
| !!! | TTTTGAAAATTGGATATCAA+TGG | + | chr4_4:72288654-72288673 | Msa0701040:three_prime_UTR | 20.0% |
| !! | TAAATAAATCAATCTAACTC+AGG | - | chr4_4:72289038-72289057 | None:intergenic | 20.0% |
| ! | AAACAAGGAAAACAATGAAA+AGG | - | chr4_4:72284121-72284140 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGAATTCAGGTT+AGG | + | chr4_4:72284564-72284583 | Msa0701040:intron | 25.0% |
| ! | AAGATAATTGAAACAACATC+TGG | - | chr4_4:72284690-72284709 | None:intergenic | 25.0% |
| !!! | TTGTGTTGATAATTTCAATG+TGG | + | chr4_4:72284756-72284775 | Msa0701040:intron | 25.0% |
| !!! | TGTGTTGATAATTTCAATGT+GGG | + | chr4_4:72284757-72284776 | Msa0701040:intron | 25.0% |
| ! | ATATTCATCAAAATTGGATC+TGG | + | chr4_4:72285060-72285079 | Msa0701040:intron | 25.0% |
| !!! | TATCCTTTTGAATGGATTAA+GGG | - | chr4_4:72285197-72285216 | None:intergenic | 25.0% |
| !!! | ATATCCTTTTGAATGGATTA+AGG | - | chr4_4:72285198-72285217 | None:intergenic | 25.0% |
| !!! | GTTATGGAATGCATTTTTTA+TGG | + | chr4_4:72285266-72285285 | Msa0701040:intron | 25.0% |
| !!! | TGCATTTTTTATGGTGTTAA+CGG | + | chr4_4:72285275-72285294 | Msa0701040:intron | 25.0% |
| ! | ATGAGTCAACAATATCAAAA+TGG | - | chr4_4:72285704-72285723 | None:intergenic | 25.0% |
| !!! | GAATACTTTTGAAACATCAA+TGG | - | chr4_4:72285801-72285820 | None:intergenic | 25.0% |
| ! | TTCTCAAATGATGAAAAGAT+AGG | - | chr4_4:72286041-72286060 | None:intergenic | 25.0% |
| !! | ATACTGTTGTTAGTTTCAAA+AGG | - | chr4_4:72286074-72286093 | None:intergenic | 25.0% |
| ! | ACTAACAACAGTATATTATG+GGG | + | chr4_4:72286080-72286099 | Msa0701040:intron | 25.0% |
| !! | TTTAATTTCTACTTTGCTGA+AGG | + | chr4_4:72286192-72286211 | Msa0701040:intron | 25.0% |
| ! | TTAATTTCTACTTTGCTGAA+GGG | + | chr4_4:72286193-72286212 | Msa0701040:intron | 25.0% |
| ! | ATTGGCAATAAAGAATCTTA+AGG | + | chr4_4:72286216-72286235 | Msa0701040:intron | 25.0% |
| ! | CCATTTGATATGATGAATAA+AGG | - | chr4_4:72286405-72286424 | None:intergenic | 25.0% |
| ! | CCTTTATTCATCATATCAAA+TGG | + | chr4_4:72286402-72286421 | Msa0701040:intron | 25.0% |
| !!! | CATTTCAGTTTTTTACAATC+AGG | - | chr4_4:72286606-72286625 | None:intergenic | 25.0% |
| ! | AAATAGATACTATCTTGAGT+AGG | + | chr4_4:72286735-72286754 | Msa0701040:intron | 25.0% |
| ! | AATAGATACTATCTTGAGTA+GGG | + | chr4_4:72286736-72286755 | Msa0701040:intron | 25.0% |
| ! | AGAAATCAGTCTTAATTACA+TGG | + | chr4_4:72286824-72286843 | Msa0701040:intron | 25.0% |
| ! | AGACTCAATTTATACAAGAT+TGG | - | chr4_4:72286897-72286916 | None:intergenic | 25.0% |
| !! | AATGTATGTAAGTTCAAGTT+TGG | + | chr4_4:72287078-72287097 | Msa0701040:intron | 25.0% |
| ! | TATTGTCAAACTTGACATTA+GGG | - | chr4_4:72287180-72287199 | None:intergenic | 25.0% |
| !!! | GATCTAAGTGTAATTTGTTA+AGG | - | chr4_4:72287388-72287407 | None:intergenic | 25.0% |
| ! | TGAAGAGGTTGTTTATTTAT+TGG | + | chr4_4:72287500-72287519 | Msa0701040:intron | 25.0% |
| ! | TGTGTGAACAATTCTTAAAA+CGG | - | chr4_4:72287560-72287579 | None:intergenic | 25.0% |
| ! | AACAACCTAATAAACATTGA+TGG | + | chr4_4:72287595-72287614 | Msa0701040:intron | 25.0% |
| !! | GTTTAAAATTAAGTGAGCTA+GGG | - | chr4_4:72287621-72287640 | None:intergenic | 25.0% |
| !! | CTTTTTCTGTGTCTTTTAAA+AGG | - | chr4_4:72287654-72287673 | None:intergenic | 25.0% |
| ! | ATGATAGAAACAAAAACATG+TGG | - | chr4_4:72287870-72287889 | None:intergenic | 25.0% |
| ! | ATTGTACCATAATCACAAAT+TGG | - | chr4_4:72287951-72287970 | None:intergenic | 25.0% |
| ! | ATTTGTGATTATGGTACAAT+CGG | + | chr4_4:72287951-72287970 | Msa0701040:intron | 25.0% |
| !! | AGAAAATTGGTAATCAGAAA+AGG | - | chr4_4:72288058-72288077 | None:intergenic | 25.0% |
| ! | ATTAATGTACACAATCCAAA+TGG | - | chr4_4:72288102-72288121 | None:intergenic | 25.0% |
| ! | TCAAGTTTATATACTGCTTA+TGG | + | chr4_4:72288498-72288517 | Msa0701040:intron | 25.0% |
| !!! | TTGAGCATTGAATAATTTGT+TGG | + | chr4_4:72288616-72288635 | Msa0701040:three_prime_UTR | 25.0% |
| !!! | GTATAAATCCCATTTTTGAA+TGG | + | chr4_4:72288804-72288823 | Msa0701040:three_prime_UTR | 25.0% |
| !! | TCATTGTTTTCCTTGTTTGT+TGG | + | chr4_4:72284123-72284142 | Msa0701040:five_prime_UTR | 30.0% |
| !! | CATTGTTTTCCTTGTTTGTT+GGG | + | chr4_4:72284124-72284143 | Msa0701040:five_prime_UTR | 30.0% |
| !! | GAGTTTTATAAGCTCTTGTT+TGG | - | chr4_4:72284209-72284228 | None:intergenic | 30.0% |
| ! | ATCAATAGGTTGAATAACAC+AGG | - | chr4_4:72284443-72284462 | None:intergenic | 30.0% |
| TCAACCTATTGATATGATCA+AGG | + | chr4_4:72284450-72284469 | Msa0701040:CDS | 30.0% | |
| CATACCTTGATCATATCAAT+AGG | - | chr4_4:72284457-72284476 | None:intergenic | 30.0% | |
| ! | TTTGATTGCTTTGTTCTTAG+TGG | + | chr4_4:72284726-72284745 | Msa0701040:intron | 30.0% |
| !! | TTTTAGATCTGTGAGTTGAA+GGG | + | chr4_4:72284829-72284848 | Msa0701040:intron | 30.0% |
| !! | TGAGTCATTGTATTTGGTTT+TGG | + | chr4_4:72284890-72284909 | Msa0701040:intron | 30.0% |
| ! | ATCAAAATTGGATCTGGAAT+TGG | + | chr4_4:72285066-72285085 | Msa0701040:intron | 30.0% |
| !! | GCTCTGAAAGAAATTACAAA+AGG | - | chr4_4:72285096-72285115 | None:intergenic | 30.0% |
| ACACAATGTAATTGTAGGAT+GGG | - | chr4_4:72285155-72285174 | None:intergenic | 30.0% | |
| AACACAATGTAATTGTAGGA+TGG | - | chr4_4:72285156-72285175 | None:intergenic | 30.0% | |
| TTAACGGTTGTCTTACTTAT+TGG | + | chr4_4:72285291-72285310 | Msa0701040:intron | 30.0% | |
| CTTGACAAATAAAGCAATTG+AGG | + | chr4_4:72285334-72285353 | Msa0701040:CDS | 30.0% | |
| ! | TTGACACTTGCTAAAAGATT+TGG | - | chr4_4:72285744-72285763 | None:intergenic | 30.0% |
| ! | CTTTTATAAAAAGGGGTTTG+TGG | - | chr4_4:72285823-72285842 | None:intergenic | 30.0% |
| AACTCCACAAAAATGAAACA+GGG | - | chr4_4:72285979-72285998 | None:intergenic | 30.0% | |
| AAACTCCACAAAAATGAAAC+AGG | - | chr4_4:72285980-72285999 | None:intergenic | 30.0% | |
| ! | TTTTATCTACTGTGGTGTAA+AGG | - | chr4_4:72286367-72286386 | None:intergenic | 30.0% |
| TGTATTTACTAGCTAATTGG+TGG | + | chr4_4:72286460-72286479 | Msa0701040:intron | 30.0% | |
| GTATTTACTAGCTAATTGGT+GGG | + | chr4_4:72286461-72286480 | Msa0701040:intron | 30.0% | |
| !!! | TACGAGTCTAGTTTTGAAAA+GGG | - | chr4_4:72286505-72286524 | None:intergenic | 30.0% |
| !!! | ATACGAGTCTAGTTTTGAAA+AGG | - | chr4_4:72286506-72286525 | None:intergenic | 30.0% |
| ATACAACTATAGCACAAGAA+AGG | - | chr4_4:72286563-72286582 | None:intergenic | 30.0% | |
| GTTTCATCTTAGTTCATGTT+TGG | + | chr4_4:72286625-72286644 | Msa0701040:intron | 30.0% | |
| ACTTGAGTTTGAATTGAACT+AGG | - | chr4_4:72286791-72286810 | None:intergenic | 30.0% | |
| CTTAATTACATGGTCCAATT+TGG | + | chr4_4:72286834-72286853 | Msa0701040:intron | 30.0% | |
| GTATTGTCAAACTTGACATT+AGG | - | chr4_4:72287181-72287200 | None:intergenic | 30.0% | |
| !! | CGATTGCTACAATTTAGTTT+TGG | + | chr4_4:72287442-72287461 | Msa0701040:intron | 30.0% |
| ! | GGTTTAAAATTAAGTGAGCT+AGG | - | chr4_4:72287622-72287641 | None:intergenic | 30.0% |
| !! | GTTCTTTGAAATAGTGAATC+TGG | + | chr4_4:72287756-72287775 | Msa0701040:intron | 30.0% |
| GAACATAGTACCATTGATAT+TGG | - | chr4_4:72287794-72287813 | None:intergenic | 30.0% | |
| AACTAAATATGCCATCTCTT+GGG | - | chr4_4:72287835-72287854 | None:intergenic | 30.0% | |
| TAACTAAATATGCCATCTCT+TGG | - | chr4_4:72287836-72287855 | None:intergenic | 30.0% | |
| TGCATTCCAATTTGTGATTA+TGG | + | chr4_4:72287942-72287961 | Msa0701040:intron | 30.0% | |
| ! | TTTCTAGTCTAAGTCATGTA+AGG | + | chr4_4:72288025-72288044 | Msa0701040:intron | 30.0% |
| TTCTAGTCTAAGTCATGTAA+GGG | + | chr4_4:72288026-72288045 | Msa0701040:intron | 30.0% | |
| ATCTCCGATTAGAAGAAAAT+TGG | - | chr4_4:72288071-72288090 | None:intergenic | 30.0% | |
| TGAGTCTTCACATAATCAAA+TGG | - | chr4_4:72288245-72288264 | None:intergenic | 30.0% | |
| AATCCGGTGTAAAATTTGAA+GGG | - | chr4_4:72288356-72288375 | None:intergenic | 30.0% | |
| TAGCTAGAAAAACATACCAA+AGG | - | chr4_4:72288448-72288467 | None:intergenic | 30.0% | |
| ! | CATAACTTTTCTCCAATTTC+TGG | - | chr4_4:72288553-72288572 | None:intergenic | 30.0% |
| !! | TTGTAGCCCTTTTTGAAAAT+TGG | + | chr4_4:72288644-72288663 | Msa0701040:three_prime_UTR | 30.0% |
| AATTAGTCATGCAATTCAAG+CGG | + | chr4_4:72288703-72288722 | Msa0701040:three_prime_UTR | 30.0% | |
| TATGATATGATATGATGCGT+TGG | + | chr4_4:72288767-72288786 | Msa0701040:three_prime_UTR | 30.0% | |
| CAAGTTCTCCATTCAAAAAT+GGG | - | chr4_4:72288815-72288834 | None:intergenic | 30.0% | |
| ACAAGTTCTCCATTCAAAAA+TGG | - | chr4_4:72288816-72288835 | None:intergenic | 30.0% | |
| TCTTCTTAACCCAACAAACA+AGG | - | chr4_4:72284136-72284155 | None:intergenic | 35.0% | |
| !!! | AAGCTCTTGTTTGGTTTTTG+TGG | - | chr4_4:72284200-72284219 | None:intergenic | 35.0% |
| AAATGAAGCGAAGAAAACGA+GGG | - | chr4_4:72284299-72284318 | None:intergenic | 35.0% | |
| AACTTCGCTAATACCAACAA+TGG | + | chr4_4:72284327-72284346 | Msa0701040:exon | 35.0% | |
| ACTTCGCTAATACCAACAAT+GGG | + | chr4_4:72284328-72284347 | Msa0701040:exon | 35.0% | |
| ! | AATTCAGGTTAGGATTCAAC+TGG | + | chr4_4:72284574-72284593 | Msa0701040:intron | 35.0% |
| ! | ATTCAGGTTAGGATTCAACT+GGG | + | chr4_4:72284575-72284594 | Msa0701040:intron | 35.0% |
| TTCTACCATGCTTAAGAATG+AGG | + | chr4_4:72284622-72284641 | Msa0701040:CDS | 35.0% | |
| TCTACCATGCTTAAGAATGA+GGG | + | chr4_4:72284623-72284642 | Msa0701040:CDS | 35.0% | |
| ACAACATCTGGAAACAAAGA+AGG | - | chr4_4:72284678-72284697 | None:intergenic | 35.0% | |
| !! | CTTTTAGATCTGTGAGTTGA+AGG | + | chr4_4:72284828-72284847 | Msa0701040:intron | 35.0% |
| ! | TTTAGATCTGTGAGTTGAAG+GGG | + | chr4_4:72284830-72284849 | Msa0701040:intron | 35.0% |
| CTAAATCCATACCTCAACAA+AGG | - | chr4_4:72284923-72284942 | None:intergenic | 35.0% | |
| TTGTTGAGGTATGGATTTAG+TGG | + | chr4_4:72284923-72284942 | Msa0701040:intron | 35.0% | |
| ATGCAAAGGACTAATGACAA+AGG | - | chr4_4:72285244-72285263 | None:intergenic | 35.0% | |
| TTGTCATTAGTCCTTTGCAT+TGG | + | chr4_4:72285244-72285263 | Msa0701040:intron | 35.0% | |
| !! | TTAGTCCTTTGCATTGGTTA+TGG | + | chr4_4:72285250-72285269 | Msa0701040:intron | 35.0% |
| TCTACCAAAAAGCTCTATGT+GGG | + | chr4_4:72285381-72285400 | Msa0701040:CDS | 35.0% | |
| !! | TCAAAGTGTTGAGTTCTTCA+AGG | + | chr4_4:72285634-72285653 | Msa0701040:CDS | 35.0% |
| AAACAGCAAAGAAACAGAAC+AGG | - | chr4_4:72285942-72285961 | None:intergenic | 35.0% | |
| !! | GTTCTGTTTCTTTGCTGTTT+AGG | + | chr4_4:72285942-72285961 | Msa0701040:intron | 35.0% |
| !! | AATGCCCTGTTTCATTTTTG+TGG | + | chr4_4:72285972-72285991 | Msa0701040:intron | 35.0% |
| ACTGTGGTGTAAAGGAAATA+GGG | - | chr4_4:72286359-72286378 | None:intergenic | 35.0% | |
| TACTGTGGTGTAAAGGAAAT+AGG | - | chr4_4:72286360-72286379 | None:intergenic | 35.0% | |
| !!! | AGGGGATTTTTTATCTACTG+TGG | - | chr4_4:72286375-72286394 | None:intergenic | 35.0% |
| ATGAATAAAGGGGAAACTAG+GGG | - | chr4_4:72286393-72286412 | None:intergenic | 35.0% | |
| GATGAATAAAGGGGAAACTA+GGG | - | chr4_4:72286394-72286413 | None:intergenic | 35.0% | |
| TGATGAATAAAGGGGAAACT+AGG | - | chr4_4:72286395-72286414 | None:intergenic | 35.0% | |
| !!! | ACGAGTCTAGTTTTGAAAAG+GGG | - | chr4_4:72286504-72286523 | None:intergenic | 35.0% |
| ACTAGACTCGTATAGATCAA+AGG | + | chr4_4:72286513-72286532 | Msa0701040:intron | 35.0% | |
| AGTTTGAATTGAACTAGGTC+TGG | - | chr4_4:72286786-72286805 | None:intergenic | 35.0% | |
| CTCATTGAGTTTCAAAAGTC+GGG | - | chr4_4:72286874-72286893 | None:intergenic | 35.0% | |
| GCTCATTGAGTTTCAAAAGT+CGG | - | chr4_4:72286875-72286894 | None:intergenic | 35.0% | |
| ! | ATTGAGTCTTTTATGCTCAG+TGG | + | chr4_4:72286908-72286927 | Msa0701040:intron | 35.0% |
| ! | TTGAGTCTTTTATGCTCAGT+GGG | + | chr4_4:72286909-72286928 | Msa0701040:intron | 35.0% |
| !! | CTTTCTGTATTGAGTTGAGT+AGG | + | chr4_4:72287126-72287145 | Msa0701040:intron | 35.0% |
| TAAGAGATACACGAAGATGA+AGG | + | chr4_4:72287214-72287233 | Msa0701040:intron | 35.0% | |
| ACGAAGATGAAGGTTATATC+TGG | + | chr4_4:72287224-72287243 | Msa0701040:intron | 35.0% | |
| !! | GCATTTCTTTCTAGTTGGAT+AGG | + | chr4_4:72287358-72287377 | Msa0701040:intron | 35.0% |
| AATTGTAGCAATCGCACTAT+AGG | - | chr4_4:72287436-72287455 | None:intergenic | 35.0% | |
| TTCACACATCAAAAGTGAAC+TGG | + | chr4_4:72287572-72287591 | Msa0701040:intron | 35.0% | |
| TAGGGCCATCAATGTTTATT+AGG | - | chr4_4:72287603-72287622 | None:intergenic | 35.0% | |
| CAACTTACAGCAACAAAACA+AGG | - | chr4_4:72287682-72287701 | None:intergenic | 35.0% | |
| !!! | CTTGTTTTGTTGCTGTAAGT+TGG | + | chr4_4:72287680-72287699 | Msa0701040:intron | 35.0% |
| !! | AGTGAATCTGGTTCTTTATC+TGG | + | chr4_4:72287768-72287787 | Msa0701040:intron | 35.0% |
| CTTTATCTGGCCAATATCAA+TGG | + | chr4_4:72287781-72287800 | Msa0701040:intron | 35.0% | |
| AAACAAAAACATGTGGCAAC+AGG | - | chr4_4:72287863-72287882 | None:intergenic | 35.0% | |
| GTTCAAGACACATATTGCAA+GGG | - | chr4_4:72287895-72287914 | None:intergenic | 35.0% | |
| AGTTCAAGACACATATTGCA+AGG | - | chr4_4:72287896-72287915 | None:intergenic | 35.0% | |
| CGGAGATATGATATTCCATT+TGG | + | chr4_4:72288084-72288103 | Msa0701040:intron | 35.0% | |
| AGAAGAGATTCAGTAGCAAA+TGG | - | chr4_4:72288174-72288193 | None:intergenic | 35.0% | |
| TGCTACTGAATCTCTTCTTT+AGG | + | chr4_4:72288176-72288195 | Msa0701040:intron | 35.0% | |
| GAATCCGGTGTAAAATTTGA+AGG | - | chr4_4:72288357-72288376 | None:intergenic | 35.0% | |
| AGAGAATAGTACCATGACAT+GGG | - | chr4_4:72288405-72288424 | None:intergenic | 35.0% | |
| AAGAGAATAGTACCATGACA+TGG | - | chr4_4:72288406-72288425 | None:intergenic | 35.0% | |
| ATTAGTCATGCAATTCAAGC+GGG | + | chr4_4:72288704-72288723 | Msa0701040:three_prime_UTR | 35.0% | |
| ATGTACAATATCAATGTGCG+AGG | + | chr4_4:72288993-72289012 | Msa0701040:three_prime_UTR | 35.0% | |
| GAAGTGAAGAACGAATCTAG+TGG | - | chr4_4:72284234-72284253 | None:intergenic | 40.0% | |
| GAAATGAAGCGAAGAAAACG+AGG | - | chr4_4:72284300-72284319 | None:intergenic | 40.0% | |
| AACACCCTCATTCTTAAGCA+TGG | - | chr4_4:72284630-72284649 | None:intergenic | 40.0% | |
| ! | ATGCTTAAGAATGAGGGTGT+TGG | + | chr4_4:72284629-72284648 | Msa0701040:CDS | 40.0% |
| CAACTCACAGATCTAAAAGC+AGG | - | chr4_4:72284827-72284846 | None:intergenic | 40.0% | |
| TTGGACTTCATCCTTTGTTG+AGG | + | chr4_4:72284909-72284928 | Msa0701040:intron | 40.0% | |
| CTTCATCCTTTGTTGAGGTA+TGG | + | chr4_4:72284914-72284933 | Msa0701040:intron | 40.0% | |
| TAAGCTGAATCACTTCTTGC+AGG | + | chr4_4:72284950-72284969 | Msa0701040:intron | 40.0% | |
| AAGCTGAATCACTTCTTGCA+GGG | + | chr4_4:72284951-72284970 | Msa0701040:intron | 40.0% | |
| CAACTCACCTAAATGTTCCA+AGG | - | chr4_4:72285022-72285041 | None:intergenic | 40.0% | |
| CAGCCCTTAATCCATTCAAA+AGG | + | chr4_4:72285191-72285210 | Msa0701040:intron | 40.0% | |
| GCATTCCATAACCAATGCAA+AGG | - | chr4_4:72285258-72285277 | None:intergenic | 40.0% | |
| AAAGCAATTGAGGCCAATGA+TGG | + | chr4_4:72285344-72285363 | Msa0701040:CDS | 40.0% | |
| !! | CATAGAGCTTTTTGGTAGAG+TGG | - | chr4_4:72285380-72285399 | None:intergenic | 40.0% |
| CTCTACCAAAAAGCTCTATG+TGG | + | chr4_4:72285380-72285399 | Msa0701040:CDS | 40.0% | |
| ATGAAGGGATTCTTTCACTG+TGG | + | chr4_4:72285546-72285565 | Msa0701040:intron | 40.0% | |
| AGTCATTTCACCTAGACCAA+CGG | - | chr4_4:72285663-72285682 | None:intergenic | 40.0% | |
| TCTAGGTGAAATGACTACTG+TGG | + | chr4_4:72285667-72285686 | Msa0701040:CDS | 40.0% | |
| TTCTACTTTGCTGAAGGGAT+TGG | + | chr4_4:72286198-72286217 | Msa0701040:intron | 40.0% | |
| TAGGGAGGAAGATTAGATGA+TGG | - | chr4_4:72286341-72286360 | None:intergenic | 40.0% | |
| GATACTATCTTGAGTAGGGT+TGG | + | chr4_4:72286740-72286759 | Msa0701040:intron | 40.0% | |
| !! | AGAAGCATCACTGTTATTCG+AGG | + | chr4_4:72287033-72287052 | Msa0701040:intron | 40.0% |
| TGTCAAACTTGACATTAGGG+CGG | - | chr4_4:72287177-72287196 | None:intergenic | 40.0% | |
| ! | ACTGGGCATTTCTTTCTAGT+TGG | + | chr4_4:72287353-72287372 | Msa0701040:intron | 40.0% |
| TAACTCAGTGAACTGTGAAG+AGG | + | chr4_4:72287485-72287504 | Msa0701040:intron | 40.0% | |
| !! | TCTTTTAAAAGGCTGACGCA+TGG | - | chr4_4:72287643-72287662 | None:intergenic | 40.0% |
| TATGGTACAATCGGTAGTCT+TGG | + | chr4_4:72287960-72287979 | Msa0701040:intron | 40.0% | |
| TTAGGTGCAAGTAGTGTATC+TGG | + | chr4_4:72288194-72288213 | Msa0701040:intron | 40.0% | |
| GAGGGAAAATATCCATACAC+CGG | + | chr4_4:72288290-72288309 | Msa0701040:CDS | 40.0% | |
| ! | GGACCCTTCAAATTTTACAC+CGG | + | chr4_4:72288350-72288369 | Msa0701040:CDS | 40.0% |
| GAGAATAGTACCATGACATG+GGG | - | chr4_4:72288404-72288423 | None:intergenic | 40.0% | |
| !!! | TTTTCTCCAATTTCTGGAGC+TGG | - | chr4_4:72288547-72288566 | None:intergenic | 40.0% |
| TTAGTCATGCAATTCAAGCG+GGG | + | chr4_4:72288705-72288724 | Msa0701040:three_prime_UTR | 40.0% | |
| TGATGTCGAAAAGATGTCTG+AGG | - | chr4_4:72288875-72288894 | None:intergenic | 40.0% | |
| TTCTTCTCGTCTCCCATTGT+TGG | - | chr4_4:72284343-72284362 | None:intergenic | 45.0% | |
| ! | TTGACGAAAGGCTTGATGGT+TGG | - | chr4_4:72284394-72284413 | None:intergenic | 45.0% |
| ACCATCAAGCCTTTCGTCAA+TGG | + | chr4_4:72284394-72284413 | Msa0701040:CDS | 45.0% | |
| ACCATTGACGAAAGGCTTGA+TGG | - | chr4_4:72284398-72284417 | None:intergenic | 45.0% | |
| ATCAAGCCTTTCGTCAATGG+TGG | + | chr4_4:72284397-72284416 | Msa0701040:CDS | 45.0% | |
| GTTAGGATTCAACTGGGTCA+AGG | + | chr4_4:72284581-72284600 | Msa0701040:CDS | 45.0% | |
| !! | GGGTGTTGGTGCTTTCTATA+AGG | + | chr4_4:72284643-72284662 | Msa0701040:CDS | 45.0% |
| !! | AGCTTTTTGGTAGAGTGGCA+GGG | - | chr4_4:72285375-72285394 | None:intergenic | 45.0% |
| ! | TCAGCCCACATAGAGCTTTT+TGG | - | chr4_4:72285388-72285407 | None:intergenic | 45.0% |
| !! | AGTTGGTAGTCCAGCTGATT+TGG | + | chr4_4:72285430-72285449 | Msa0701040:CDS | 45.0% |
| TTTGGCACTCATTCGTATGC+AGG | + | chr4_4:72285448-72285467 | Msa0701040:CDS | 45.0% | |
| !! | GGAAGGCGTTTGTGTAGTTT+CGG | - | chr4_4:72285502-72285521 | None:intergenic | 45.0% |
| AAACTACACAAACGCCTTCC+AGG | + | chr4_4:72285502-72285521 | Msa0701040:CDS | 45.0% | |
| TTCCAGGCACTTTACCGTAT+CGG | + | chr4_4:72285518-72285537 | Msa0701040:CDS | 45.0% | |
| GGGATTCTTTCACTGTGGAA+AGG | + | chr4_4:72285551-72285570 | Msa0701040:intron | 45.0% | |
| !! | TTTCACTGTGGAAAGGTGCT+GGG | + | chr4_4:72285558-72285577 | Msa0701040:intron | 45.0% |
| ! | AAGAGCCATGGCATTGAACA+TGG | + | chr4_4:72285592-72285611 | Msa0701040:CDS | 45.0% |
| ! | AGAGCCATGGCATTGAACAT+GGG | + | chr4_4:72285593-72285612 | Msa0701040:CDS | 45.0% |
| GAGTTCTTCAAGGATACCGT+TGG | + | chr4_4:72285644-72285663 | Msa0701040:CDS | 45.0% | |
| ! | TTCAAGGATACCGTTGGTCT+AGG | + | chr4_4:72285650-72285669 | Msa0701040:CDS | 45.0% |
| GGTGAAATGACTACTGTGGT+TGG | + | chr4_4:72285671-72285690 | Msa0701040:CDS | 45.0% | |
| GTGGTGTAAAGGAAATAGGG+AGG | - | chr4_4:72286356-72286375 | None:intergenic | 45.0% | |
| !! | TCACTCTCTAGCTAGCTTTC+TGG | + | chr4_4:72286429-72286448 | Msa0701040:intron | 45.0% |
| GAATTGAACTAGGTCTGGCT+TGG | - | chr4_4:72286781-72286800 | None:intergenic | 45.0% | |
| AGCATCACTGTTATTCGAGG+CGG | + | chr4_4:72287036-72287055 | Msa0701040:intron | 45.0% | |
| !! | GTATTGAGTTGAGTAGGCAC+AGG | + | chr4_4:72287132-72287151 | Msa0701040:intron | 45.0% |
| CTTTATGCACACCCAAGAGA+TGG | + | chr4_4:72287821-72287840 | Msa0701040:intron | 45.0% | |
| AAAGATGCAACCTGATGCTG+AGG | + | chr4_4:72288271-72288290 | Msa0701040:CDS | 45.0% | |
| AAGATGCAACCTGATGCTGA+GGG | + | chr4_4:72288272-72288291 | Msa0701040:CDS | 45.0% | |
| ! | GGATATTTTCCCTCAGCATC+AGG | - | chr4_4:72288284-72288303 | None:intergenic | 45.0% |
| GCTGTCAAGACCTTCAAATC+TGG | + | chr4_4:72288326-72288345 | Msa0701040:CDS | 45.0% | |
| GTCAAGACCTTCAAATCTGG+AGG | + | chr4_4:72288329-72288348 | Msa0701040:CDS | 45.0% | |
| CAATCCTGACACAGTAGACA+GGG | - | chr4_4:72288379-72288398 | None:intergenic | 45.0% | |
| ACTGCTTATGGCAGATGACA+TGG | + | chr4_4:72288510-72288529 | Msa0701040:intron | 45.0% | |
| AATATCAATGTGCGAGGACG+AGG | + | chr4_4:72288999-72289018 | Msa0701040:intron | 45.0% | |
| !!! | AATTTATTCTTTTATAAAAA+GGG | - | chr4_4:72285831-72285850 | None:intergenic | 5.0% |
| !!! | TAATTTATTCTTTTATAAAA+AGG | - | chr4_4:72285832-72285851 | None:intergenic | 5.0% |
| !!! | TTTTTATGTATTTTTTATTT+TGG | + | chr4_4:72288957-72288976 | Msa0701040:three_prime_UTR | 5.0% |
| !!! | TTTTATGTATTTTTTATTTT+GGG | + | chr4_4:72288958-72288977 | Msa0701040:three_prime_UTR | 5.0% |
| AAACCAGCAGCAACAGGCTT+AGG | - | chr4_4:72284367-72284386 | None:intergenic | 50.0% | |
| ! | GAAGCACCACCATTGACGAA+AGG | - | chr4_4:72284406-72284425 | None:intergenic | 50.0% |
| ! | TTCGTCAATGGTGGTGCTTC+TGG | + | chr4_4:72284406-72284425 | Msa0701040:CDS | 50.0% |
| TTCTTGCAGGGTCTATCAGC+TGG | + | chr4_4:72284963-72284982 | Msa0701040:intron | 50.0% | |
| TCTTGCAGGGTCTATCAGCT+GGG | + | chr4_4:72284964-72284983 | Msa0701040:intron | 50.0% | |
| GTCTATCAGCTGGGTTACTC+AGG | + | chr4_4:72284973-72284992 | Msa0701040:CDS | 50.0% | |
| AAATGTTCCAAGGCGTGCAG+TGG | - | chr4_4:72285012-72285031 | None:intergenic | 50.0% | |
| CTGCACGCCTTGGAACATTT+AGG | + | chr4_4:72285012-72285031 | Msa0701040:CDS | 50.0% | |
| !! | GCTTTTTGGTAGAGTGGCAG+GGG | - | chr4_4:72285374-72285393 | None:intergenic | 50.0% |
| !! | GAGCTTTTTGGTAGAGTGGC+AGG | - | chr4_4:72285376-72285395 | None:intergenic | 50.0% |
| GGTGCAATTGGAGCAACAGT+TGG | + | chr4_4:72285413-72285432 | Msa0701040:CDS | 50.0% | |
| CGAATGAGTGCCAAATCAGC+TGG | - | chr4_4:72285443-72285462 | None:intergenic | 50.0% | |
| ! | GATACGGTAAAGTGCCTGGA+AGG | - | chr4_4:72285519-72285538 | None:intergenic | 50.0% |
| ! | TACCGTATCGGTGCAGATGA+AGG | + | chr4_4:72285530-72285549 | Msa0701040:intron | 50.0% |
| ! | ACCGTATCGGTGCAGATGAA+GGG | + | chr4_4:72285531-72285550 | Msa0701040:intron | 50.0% |
| ! | TCCCTTCATCTGCACCGATA+CGG | - | chr4_4:72285535-72285554 | None:intergenic | 50.0% |
| ! | CTTTCACTGTGGAAAGGTGC+TGG | + | chr4_4:72285557-72285576 | Msa0701040:intron | 50.0% |
| GCCTACTGTAGTAAGAGCCA+TGG | + | chr4_4:72285580-72285599 | Msa0701040:CDS | 50.0% | |
| GCCATGGCTCTTACTACAGT+AGG | - | chr4_4:72285584-72285603 | None:intergenic | 50.0% | |
| ! | GAGCCATGGCATTGAACATG+GGG | + | chr4_4:72285594-72285613 | Msa0701040:CDS | 50.0% |
| CATCCCCATGTTCAATGCCA+TGG | - | chr4_4:72285600-72285619 | None:intergenic | 50.0% | |
| AGTTGAGTAGGCACAGGAGT+TGG | + | chr4_4:72287138-72287157 | Msa0701040:intron | 50.0% | |
| GAAGGGTCCTCCAGATTTGA+AGG | - | chr4_4:72288339-72288358 | None:intergenic | 50.0% | |
| GACACAGTAGACAGGGAATC+CGG | - | chr4_4:72288372-72288391 | None:intergenic | 50.0% | |
| GATTCCCTGTCTACTGTGTC+AGG | + | chr4_4:72288372-72288391 | Msa0701040:CDS | 50.0% | |
| GCAATCCTGACACAGTAGAC+AGG | - | chr4_4:72288380-72288399 | None:intergenic | 50.0% | |
| !! | CCAATTTCTGGAGCTGGTTG+AGG | - | chr4_4:72288541-72288560 | None:intergenic | 50.0% |
| CCTCAACCAGCTCCAGAAAT+TGG | + | chr4_4:72288538-72288557 | Msa0701040:CDS | 50.0% | |
| AAGCCTAAGCCTGTTGCTGC+TGG | + | chr4_4:72284361-72284380 | Msa0701040:CDS | 55.0% | |
| !! | AGCCTGTTGCTGCTGGTTTC+TGG | + | chr4_4:72284368-72284387 | Msa0701040:CDS | 55.0% |
| ATCAGCTGGGTTACTCAGGC+AGG | + | chr4_4:72284977-72284996 | Msa0701040:CDS | 55.0% | |
| ACTTACACCACTGCACGCCT+TGG | + | chr4_4:72285002-72285021 | Msa0701040:CDS | 55.0% | |
| ! | TAGTTTCGGCGCTGAGCAAG+AGG | - | chr4_4:72285488-72285507 | None:intergenic | 55.0% |
| ! | CACCGATACGGTAAAGTGCC+TGG | - | chr4_4:72285523-72285542 | None:intergenic | 55.0% |
| CAGTCAAGAGAGCCGGTGTA+TGG | - | chr4_4:72288305-72288324 | None:intergenic | 55.0% | |
| GACAGCACAGTCAAGAGAGC+CGG | - | chr4_4:72288312-72288331 | None:intergenic | 55.0% | |
| CAGGATTGCTCCCCATGTCA+TGG | + | chr4_4:72288391-72288410 | Msa0701040:CDS | 55.0% | |
| GGCCAGAAACCAGCAGCAAC+AGG | - | chr4_4:72284373-72284392 | None:intergenic | 60.0% | |
| TGGCAGGGGCTTGCCATCAT+TGG | - | chr4_4:72285360-72285379 | None:intergenic | 60.0% | |
| ! | GCTCTATGTGGGCTGACTGC+TGG | + | chr4_4:72285392-72285411 | Msa0701040:CDS | 60.0% |
| GGGCTGACTGCTGGTGCAAT+TGG | + | chr4_4:72285401-72285420 | Msa0701040:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 72284074 | 72289156 | 72284074 | ID=Msa0701040;Name=Msa0701040 |
| chr4_4 | mRNA | 72284074 | 72289156 | 72284074 | ID=Msa0701040-mRNA-1;Parent=Msa0701040;Name=Msa0701040-mRNA-1;_AED=0.05;_eAED=0.05;_QI=272|0.85|0.75|1|0.71|0.5|8|548|290 |
| chr4_4 | exon | 72284074 | 72284471 | 72284074 | ID=Msa0701040-mRNA-1:exon:22099;Parent=Msa0701040-mRNA-1 |
| chr4_4 | exon | 72284581 | 72284664 | 72284581 | ID=Msa0701040-mRNA-1:exon:22100;Parent=Msa0701040-mRNA-1 |
| chr4_4 | exon | 72284972 | 72285033 | 72284972 | ID=Msa0701040-mRNA-1:exon:22101;Parent=Msa0701040-mRNA-1 |
| chr4_4 | exon | 72285331 | 72285539 | 72285331 | ID=Msa0701040-mRNA-1:exon:22102;Parent=Msa0701040-mRNA-1 |
| chr4_4 | exon | 72285573 | 72285692 | 72285573 | ID=Msa0701040-mRNA-1:exon:22103;Parent=Msa0701040-mRNA-1 |
| chr4_4 | exon | 72288198 | 72288412 | 72288198 | ID=Msa0701040-mRNA-1:exon:22104;Parent=Msa0701040-mRNA-1 |
| chr4_4 | exon | 72288524 | 72289012 | 72288524 | ID=Msa0701040-mRNA-1:exon:22105;Parent=Msa0701040-mRNA-1 |
| chr4_4 | exon | 72289041 | 72289156 | 72289041 | ID=Msa0701040-mRNA-1:exon:22106;Parent=Msa0701040-mRNA-1 |
| chr4_4 | five_prime_UTR | 72284074 | 72284345 | 72284074 | ID=Msa0701040-mRNA-1:five_prime_utr;Parent=Msa0701040-mRNA-1 |
| chr4_4 | CDS | 72284346 | 72284471 | 72284346 | ID=Msa0701040-mRNA-1:cds;Parent=Msa0701040-mRNA-1 |
| chr4_4 | CDS | 72284581 | 72284664 | 72284581 | ID=Msa0701040-mRNA-1:cds;Parent=Msa0701040-mRNA-1 |
| chr4_4 | CDS | 72284972 | 72285033 | 72284972 | ID=Msa0701040-mRNA-1:cds;Parent=Msa0701040-mRNA-1 |
| chr4_4 | CDS | 72285331 | 72285539 | 72285331 | ID=Msa0701040-mRNA-1:cds;Parent=Msa0701040-mRNA-1 |
| chr4_4 | CDS | 72285573 | 72285692 | 72285573 | ID=Msa0701040-mRNA-1:cds;Parent=Msa0701040-mRNA-1 |
| chr4_4 | CDS | 72288198 | 72288412 | 72288198 | ID=Msa0701040-mRNA-1:cds;Parent=Msa0701040-mRNA-1 |
| chr4_4 | CDS | 72288524 | 72288580 | 72288524 | ID=Msa0701040-mRNA-1:cds;Parent=Msa0701040-mRNA-1 |
| chr4_4 | three_prime_UTR | 72288581 | 72289012 | 72288581 | ID=Msa0701040-mRNA-1:three_prime_utr;Parent=Msa0701040-mRNA-1 |
| chr4_4 | three_prime_UTR | 72289041 | 72289156 | 72289041 | ID=Msa0701040-mRNA-1:three_prime_utr;Parent=Msa0701040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
