Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657060 | XP_003629745.1 | 89.759 | 332 | 3 | 1 | 1 | 332 | 1 | 301 | 0.0 | 593 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657060 | sp|Q9C5M0|DTC_ARATH | 75.301 | 332 | 48 | 3 | 1 | 332 | 1 | 298 | 0.0 | 506 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0038860 | Msa0657060 | 0.803410 | 3.532688e-49 | -8.615850e-47 |
| Msa0075740 | Msa0657060 | -0.806976 | 6.333285e-50 | -8.615850e-47 |
| Msa0075750 | Msa0657060 | -0.810590 | 1.068583e-50 | -8.615850e-47 |
| Msa0108490 | Msa0657060 | 0.813767 | 2.167017e-51 | -8.615850e-47 |
| Msa0617690 | Msa0657060 | 0.826084 | 3.293407e-54 | -8.615850e-47 |
| Msa0618020 | Msa0657060 | 0.985669 | 2.734724e-164 | -8.615850e-47 |
| Msa0652270 | Msa0657060 | 0.852411 | 4.700234e-61 | -8.615850e-47 |
| Msa0657060 | Msa0694810 | 0.820117 | 8.126083e-53 | -8.615850e-47 |
| Msa0657060 | Msa0701040 | 0.971626 | 1.846770e-133 | -8.615850e-47 |
| Msa0657060 | Msa0722140 | 0.803234 | 3.842574e-49 | -8.615850e-47 |
| Msa0657060 | Msa0756160 | 0.815350 | 9.671924e-52 | -8.615850e-47 |
| Msa0657060 | Msa0835180 | 0.805789 | 1.126505e-49 | -8.615850e-47 |
| Msa0657060 | Msa0931410 | 0.811170 | 8.005667e-51 | -8.615850e-47 |
| Msa0657060 | Msa1030950 | 0.813909 | 2.016063e-51 | -8.615850e-47 |
| Msa0657060 | Msa1035850 | -0.809060 | 2.279795e-50 | -8.615850e-47 |
| Msa0657060 | Msa1044520 | 0.834836 | 2.380316e-56 | -8.615850e-47 |
| Msa0657060 | Msa1204260 | 0.801107 | 1.052624e-48 | -8.615850e-47 |
| Msa0657060 | Msa1221780 | 0.818610 | 1.791341e-52 | -8.615850e-47 |
| Msa0657060 | Msa1264300 | 0.820781 | 5.722571e-53 | -8.615850e-47 |
| Msa0657060 | Msa1333160 | 0.810966 | 8.863664e-51 | -8.615850e-47 |
| Msa0657060 | Msa1334350 | 0.807540 | 4.809210e-50 | -8.615850e-47 |
| Msa0657060 | Msa1402340 | 0.807206 | 5.660314e-50 | -8.615850e-47 |
| Msa0168260 | Msa0657060 | 0.837316 | 5.586433e-57 | -8.615850e-47 |
| Msa0178840 | Msa0657060 | 0.800600 | 1.335541e-48 | -8.615850e-47 |
| Msa0235970 | Msa0657060 | 0.841287 | 5.207059e-58 | -8.615850e-47 |
| Msa0374300 | Msa0657060 | 0.829585 | 4.739966e-55 | -8.615850e-47 |
| Msa0424940 | Msa0657060 | 0.819219 | 1.302939e-52 | -8.615850e-47 |
| Msa0469700 | Msa0657060 | 0.811084 | 8.355333e-51 | -8.615850e-47 |
| Msa0302440 | Msa0657060 | 0.816197 | 6.259611e-52 | -8.615850e-47 |
| Msa0321140 | Msa0657060 | -0.816584 | 5.128885e-52 | -8.615850e-47 |
| Msa0515530 | Msa0657060 | 0.803272 | 3.773986e-49 | -8.615850e-47 |
| Msa0556690 | Msa0657060 | 0.826228 | 3.044349e-54 | -8.615850e-47 |
| Msa0564920 | Msa0657060 | 0.947510 | 5.851031e-106 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657060 | MtrunA17_Chr8g0378951 | 89.759 | 332 | 3 | 1 | 1 | 332 | 1 | 301 | 0.0 | 593 |
| Msa0657060 | MtrunA17_Chr5g0412401 | 36.765 | 340 | 168 | 6 | 18 | 330 | 3 | 322 | 3.75e-60 | 195 |
| Msa0657060 | MtrunA17_Chr8g0367641 | 38.750 | 320 | 182 | 6 | 18 | 330 | 3 | 315 | 3.30e-56 | 185 |
| Msa0657060 | MtrunA17_Chr3g0133111 | 37.346 | 324 | 179 | 7 | 18 | 330 | 3 | 313 | 9.52e-56 | 184 |
| Msa0657060 | MtrunA17_Chr7g0241521 | 31.034 | 319 | 178 | 7 | 21 | 328 | 13 | 300 | 2.14e-35 | 130 |
| Msa0657060 | MtrunA17_Chr4g0008061 | 29.874 | 318 | 192 | 5 | 14 | 329 | 11 | 299 | 1.23e-34 | 128 |
| Msa0657060 | MtrunA17_Chr1g0196921 | 31.788 | 302 | 179 | 7 | 27 | 326 | 20 | 296 | 1.86e-33 | 125 |
| Msa0657060 | MtrunA17_Chr8g0379131 | 63.014 | 73 | 27 | 0 | 243 | 315 | 28 | 100 | 3.69e-26 | 100 |
| Msa0657060 | MtrunA17_Chr8g0378971 | 72.131 | 61 | 17 | 0 | 265 | 325 | 3 | 63 | 1.67e-25 | 97.1 |
| Msa0657060 | MtrunA17_Chr3g0103681 | 27.609 | 297 | 185 | 6 | 33 | 326 | 28 | 297 | 2.52e-19 | 86.7 |
| Msa0657060 | MtrunA17_Chr1g0196161 | 27.869 | 183 | 116 | 4 | 149 | 326 | 3 | 174 | 2.09e-16 | 76.3 |
| Msa0657060 | MtrunA17_Chr4g0004571 | 23.891 | 293 | 175 | 7 | 14 | 294 | 3 | 259 | 3.60e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0657060 | AT5G19760.1 | 75.301 | 332 | 48 | 3 | 1 | 332 | 1 | 298 | 0.0 | 506 |
| Msa0657060 | AT4G24570.1 | 39.506 | 324 | 172 | 8 | 18 | 330 | 3 | 313 | 1.01e-61 | 199 |
| Msa0657060 | AT2G22500.1 | 37.578 | 322 | 179 | 7 | 18 | 330 | 3 | 311 | 1.16e-51 | 173 |
| Msa0657060 | AT5G09470.1 | 40.773 | 233 | 130 | 4 | 98 | 328 | 107 | 333 | 8.06e-45 | 156 |
| Msa0657060 | AT3G54110.1 | 33.108 | 296 | 169 | 7 | 32 | 325 | 27 | 295 | 4.30e-35 | 130 |
| Msa0657060 | AT1G14140.1 | 31.692 | 325 | 172 | 8 | 16 | 326 | 11 | 299 | 1.63e-34 | 128 |
| Msa0657060 | AT5G58970.1 | 29.114 | 316 | 186 | 5 | 18 | 326 | 13 | 297 | 2.56e-34 | 128 |
| Msa0657060 | AT5G58970.2 | 28.846 | 260 | 154 | 4 | 18 | 270 | 13 | 248 | 1.12e-25 | 103 |
| Msa0657060 | AT4G03115.1 | 27.679 | 336 | 188 | 11 | 2 | 326 | 17 | 308 | 4.21e-25 | 103 |
| Msa0657060 | AT4G03115.3 | 27.679 | 336 | 188 | 11 | 2 | 326 | 49 | 340 | 4.25e-25 | 103 |
| Msa0657060 | AT4G03115.5 | 29.075 | 227 | 146 | 6 | 102 | 326 | 24 | 237 | 1.42e-20 | 89.4 |
| Msa0657060 | AT4G03115.6 | 29.075 | 227 | 146 | 6 | 102 | 326 | 32 | 245 | 2.03e-20 | 89.4 |
| Msa0657060 | AT5G01340.1 | 25.079 | 315 | 192 | 8 | 22 | 326 | 18 | 298 | 2.16e-16 | 79.0 |
Find 111 sgRNAs with CRISPR-Local
Find 317 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCTGTTGCTGCTGGTTTC+TGG | 0.111154 | 4_3:+66504725 | Msa0657060:CDS |
| CCTCAACCAGCTCCAGAAAT+TGG | 0.196597 | 4_3:+66509090 | Msa0657060:CDS |
| TTGATATCCAATTTCCAAAA+AGG | 0.198633 | 4_3:-66509204 | None:intergenic |
| GGAGAAAAGTTATGGGTTAT+AGG | 0.255079 | 4_3:+66509111 | Msa0657060:CDS |
| TTCGTCAATGGTGGTGCTTC+TGG | 0.275917 | 4_3:+66504763 | Msa0657060:CDS |
| TTAGGTGCAAGTAGTGTATC+TGG | 0.278521 | 4_3:+66508746 | Msa0657060:intron |
| CAGAAATTGGAGAAAAGTTA+TGG | 0.301655 | 4_3:+66509103 | Msa0657060:CDS |
| TTCTTGCAGGGTCTATCAGC+TGG | 0.316238 | 4_3:+66505321 | Msa0657060:intron |
| AGTTGGTAGTCCAGCTGATT+TGG | 0.324876 | 4_3:+66505788 | Msa0657060:CDS |
| CTTTCACTGTGGAAAGGTGC+TGG | 0.335848 | 4_3:+66505915 | Msa0657060:CDS |
| GGGCTGACTGCTGGTGCAAT+TGG | 0.358637 | 4_3:+66505759 | Msa0657060:CDS |
| AAACTACACAAACGCCTTCC+AGG | 0.363434 | 4_3:+66505860 | Msa0657060:CDS |
| GGGTGTTGGTGCTTTCTATA+AGG | 0.363669 | 4_3:+66505000 | Msa0657060:CDS |
| CTGCACGCCTTGGAACATTT+AGG | 0.364412 | 4_3:+66505370 | Msa0657060:CDS |
| TGGCAGGGGCTTGCCATCAT+TGG | 0.380343 | 4_3:-66505715 | None:intergenic |
| GGAAGGCGTTTGTGTAGTTT+CGG | 0.380503 | 4_3:-66505857 | None:intergenic |
| CCAATTTCTGGAGCTGGTTG+AGG | 0.389193 | 4_3:-66509090 | None:intergenic |
| TTCTTCTCGTCTCCCATTGT+TGG | 0.393560 | 4_3:-66504697 | None:intergenic |
| AATTCAGGTTAGGATTCAAC+TGG | 0.396885 | 4_3:+66504931 | Msa0657060:intron |
| TAATTTGTTGGCTGTGTTGT+AGG | 0.400868 | 4_3:+66509180 | Msa0657060:three_prime_UTR |
| GAAGGGTCCTCCAGATTTGA+AGG | 0.417928 | 4_3:-66508888 | None:intergenic |
| TTGAGCATTGAATAATTTGT+TGG | 0.423699 | 4_3:+66509168 | Msa0657060:three_prime_UTR |
| AGAAATTGGAGAAAAGTTAT+GGG | 0.426080 | 4_3:+66509104 | Msa0657060:CDS |
| ACCATTGACGAAAGGCTTGA+TGG | 0.428395 | 4_3:-66504752 | None:intergenic |
| GCTGTCAAGACCTTCAAATC+TGG | 0.432966 | 4_3:+66508878 | Msa0657060:CDS |
| CAGTCAAGAGAGCCGGTGTA+TGG | 0.437255 | 4_3:-66508854 | None:intergenic |
| GGCCAGAAACCAGCAGCAAC+AGG | 0.443267 | 4_3:-66504727 | None:intergenic |
| CATACCTTGATCATATCAAT+AGG | 0.451587 | 4_3:-66504811 | None:intergenic |
| TGAGTCTTCACATAATCAAA+TGG | 0.453835 | 4_3:-66508794 | None:intergenic |
| TACCGTATCGGTGCAGATGA+AGG | 0.455491 | 4_3:+66505888 | Msa0657060:CDS |
| ACCATCAAGCCTTTCGTCAA+TGG | 0.457555 | 4_3:+66504751 | Msa0657060:CDS |
| CACCGATACGGTAAAGTGCC+TGG | 0.473291 | 4_3:-66505878 | None:intergenic |
| TCAAAGTGTTGAGTTCTTCA+AGG | 0.476440 | 4_3:+66505992 | Msa0657060:CDS |
| TTCAAGGATACCGTTGGTCT+AGG | 0.476717 | 4_3:+66506008 | Msa0657060:CDS |
| GTCTATCAGCTGGGTTACTC+AGG | 0.478134 | 4_3:+66505331 | Msa0657060:CDS |
| GATTCCCTGTCTACTGTGTC+AGG | 0.479793 | 4_3:+66508924 | Msa0657060:CDS |
| TTTCACTGTGGAAAGGTGCT+GGG | 0.480851 | 4_3:+66505916 | Msa0657060:CDS |
| TCAACCTATTGATATGATCA+AGG | 0.487786 | 4_3:+66504807 | Msa0657060:CDS |
| AAGCCTAAGCCTGTTGCTGC+TGG | 0.491227 | 4_3:+66504718 | Msa0657060:CDS |
| AAACAAGGAAAACAATGAAA+AGG | 0.495989 | 4_3:-66504475 | None:intergenic |
| TTCTACCATGCTTAAGAATG+AGG | 0.497892 | 4_3:+66504979 | Msa0657060:CDS |
| CTTGACAAATAAAGCAATTG+AGG | 0.499499 | 4_3:+66505692 | Msa0657060:CDS |
| ACTTACACCACTGCACGCCT+TGG | 0.499902 | 4_3:+66505360 | Msa0657060:CDS |
| TTTGGCACTCATTCGTATGC+AGG | 0.500271 | 4_3:+66505806 | Msa0657060:CDS |
| GACACAGTAGACAGGGAATC+CGG | 0.501193 | 4_3:-66508921 | None:intergenic |
| AAGAGCCATGGCATTGAACA+TGG | 0.503929 | 4_3:+66505950 | Msa0657060:CDS |
| GAATCCGGTGTAAAATTTGA+AGG | 0.507310 | 4_3:-66508906 | None:intergenic |
| GCAATCCTGACACAGTAGAC+AGG | 0.508794 | 4_3:-66508929 | None:intergenic |
| TGTGTTGATAATTTCAATGT+GGG | 0.509954 | 4_3:+66505114 | Msa0657060:CDS |
| ATCAGCTGGGTTACTCAGGC+AGG | 0.514032 | 4_3:+66505335 | Msa0657060:CDS |
| GCTCTATGTGGGCTGACTGC+TGG | 0.520808 | 4_3:+66505750 | Msa0657060:CDS |
| CGAATGAGTGCCAAATCAGC+TGG | 0.523817 | 4_3:-66505798 | None:intergenic |
| ATTAGTCATGCAATTCAAGC+GGG | 0.524365 | 4_3:+66509256 | Msa0657060:three_prime_UTR |
| AAAGCAATTGAGGCCAATGA+TGG | 0.524756 | 4_3:+66505702 | Msa0657060:CDS |
| TTCCAGGCACTTTACCGTAT+CGG | 0.534625 | 4_3:+66505876 | Msa0657060:CDS |
| ACTTCGCTAATACCAACAAT+GGG | 0.536551 | 4_3:+66504685 | Msa0657060:exon |
| TCTTGCAGGGTCTATCAGCT+GGG | 0.537823 | 4_3:+66505322 | Msa0657060:intron |
| CAGGATTGCTCCCCATGTCA+TGG | 0.543518 | 4_3:+66508943 | Msa0657060:CDS |
| TCCCTTCATCTGCACCGATA+CGG | 0.543890 | 4_3:-66505890 | None:intergenic |
| AAGTTATGGGTTATAGGTGA+TGG | 0.547875 | 4_3:+66509117 | Msa0657060:exon |
| ACCGTATCGGTGCAGATGAA+GGG | 0.548027 | 4_3:+66505889 | Msa0657060:CDS |
| AAACCAGCAGCAACAGGCTT+AGG | 0.550180 | 4_3:-66504721 | None:intergenic |
| TTGACGAAAGGCTTGATGGT+TGG | 0.552826 | 4_3:-66504748 | None:intergenic |
| AACTTCGCTAATACCAACAA+TGG | 0.553022 | 4_3:+66504684 | Msa0657060:exon |
| CATCCCCATGTTCAATGCCA+TGG | 0.555090 | 4_3:-66505955 | None:intergenic |
| ACTGCTTATGGCAGATGACA+TGG | 0.559975 | 4_3:+66509062 | Msa0657060:intron |
| GTTAGGATTCAACTGGGTCA+AGG | 0.566704 | 4_3:+66504938 | Msa0657060:CDS |
| CAACTCACAGATCTAAAAGC+AGG | 0.570922 | 4_3:-66505181 | None:intergenic |
| GAGTTCTTCAAGGATACCGT+TGG | 0.572249 | 4_3:+66506002 | Msa0657060:CDS |
| GACAGCACAGTCAAGAGAGC+CGG | 0.574269 | 4_3:-66508861 | None:intergenic |
| TCTTCTTAACCCAACAAACA+AGG | 0.579884 | 4_3:-66504490 | None:intergenic |
| AAAGATGCAACCTGATGCTG+AGG | 0.582204 | 4_3:+66508823 | Msa0657060:CDS |
| TAGTTTCGGCGCTGAGCAAG+AGG | 0.584237 | 4_3:-66505843 | None:intergenic |
| TATGATATGATATGATGCGT+TGG | 0.588193 | 4_3:+66509319 | Msa0657060:three_prime_UTR |
| ATCAATAGGTTGAATAACAC+AGG | 0.588855 | 4_3:-66504797 | None:intergenic |
| GAAATGAAGCGAAGAAAACG+AGG | 0.590384 | 4_3:-66504654 | None:intergenic |
| GGGATTCTTTCACTGTGGAA+AGG | 0.593663 | 4_3:+66505909 | Msa0657060:CDS |
| AACACCCTCATTCTTAAGCA+TGG | 0.601421 | 4_3:-66504984 | None:intergenic |
| GTCAAGACCTTCAAATCTGG+AGG | 0.605904 | 4_3:+66508881 | Msa0657060:CDS |
| AAGAGAATAGTACCATGACA+TGG | 0.606457 | 4_3:-66508955 | None:intergenic |
| AGAGCCATGGCATTGAACAT+GGG | 0.610100 | 4_3:+66505951 | Msa0657060:CDS |
| AAATGTTCCAAGGCGTGCAG+TGG | 0.610327 | 4_3:-66505367 | None:intergenic |
| GAGCCATGGCATTGAACATG+GGG | 0.612866 | 4_3:+66505952 | Msa0657060:CDS |
| ATCAAGCCTTTCGTCAATGG+TGG | 0.613468 | 4_3:+66504754 | Msa0657060:CDS |
| AGAGAATAGTACCATGACAT+GGG | 0.614065 | 4_3:-66508954 | None:intergenic |
| TCTACCATGCTTAAGAATGA+GGG | 0.614254 | 4_3:+66504980 | Msa0657060:CDS |
| AATTAGTCATGCAATTCAAG+CGG | 0.614528 | 4_3:+66509255 | Msa0657060:three_prime_UTR |
| AATCCGGTGTAAAATTTGAA+GGG | 0.616204 | 4_3:-66508905 | None:intergenic |
| CAATCCTGACACAGTAGACA+GGG | 0.622100 | 4_3:-66508928 | None:intergenic |
| ATAACATGTACAATATCTCG+TGG | 0.622110 | 4_3:+66509536 | Msa0657060:three_prime_UTR |
| CAACTCACCTAAATGTTCCA+AGG | 0.622902 | 4_3:-66505377 | None:intergenic |
| TTGTGTTGATAATTTCAATG+TGG | 0.627785 | 4_3:+66505113 | Msa0657060:CDS |
| ATGAAGGGATTCTTTCACTG+TGG | 0.628478 | 4_3:+66505904 | Msa0657060:CDS |
| GGTGAAATGACTACTGTGGT+TGG | 0.629754 | 4_3:+66506029 | Msa0657060:CDS |
| GATACGGTAAAGTGCCTGGA+AGG | 0.630447 | 4_3:-66505874 | None:intergenic |
| GCCATGGCTCTTACTACAGT+AGG | 0.638558 | 4_3:-66505939 | None:intergenic |
| GAAGTGAAGAACGAATCTAG+TGG | 0.641926 | 4_3:-66504588 | None:intergenic |
| GCCTACTGTAGTAAGAGCCA+TGG | 0.642788 | 4_3:+66505938 | Msa0657060:CDS |
| ATGTGTCGAAAAGATGTCTG+AGG | 0.652732 | 4_3:-66509424 | None:intergenic |
| GGTGCAATTGGAGCAACAGT+TGG | 0.654003 | 4_3:+66505771 | Msa0657060:CDS |
| GAAGCACCACCATTGACGAA+AGG | 0.656464 | 4_3:-66504760 | None:intergenic |
| ATTCAGGTTAGGATTCAACT+GGG | 0.656898 | 4_3:+66504932 | Msa0657060:intron |
| GAGGGAAAATATCCATACAC+CGG | 0.660454 | 4_3:+66508842 | Msa0657060:CDS |
| AGTCATTTCACCTAGACCAA+CGG | 0.665426 | 4_3:-66506018 | None:intergenic |
| TTAGTCATGCAATTCAAGCG+GGG | 0.668074 | 4_3:+66509257 | Msa0657060:three_prime_UTR |
| ATGCTTAAGAATGAGGGTGT+TGG | 0.674370 | 4_3:+66504986 | Msa0657060:CDS |
| TAACATGTACAATATCTCGT+GGG | 0.675913 | 4_3:+66509537 | Msa0657060:three_prime_UTR |
| AAATGAAGCGAAGAAAACGA+GGG | 0.676255 | 4_3:-66504653 | None:intergenic |
| GAGAATAGTACCATGACATG+GGG | 0.680357 | 4_3:-66508953 | None:intergenic |
| AAGATGCAACCTGATGCTGA+GGG | 0.680874 | 4_3:+66508824 | Msa0657060:CDS |
| TCTAGGTGAAATGACTACTG+TGG | 0.723327 | 4_3:+66506025 | Msa0657060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTATATTGTTTACTT+TGG | + | chr4_3:66505212-66505231 | Msa0657060:intron | 10.0% |
| !!! | CTAATTTATTCTTTTATAAA+AGG | - | chr4_3:66506385-66506404 | None:intergenic | 10.0% |
| !!! | ATAAATTCATTTTTTTTAAC+TGG | + | chr4_3:66507889-66507908 | Msa0657060:intron | 10.0% |
| !!! | TAAATTCATTTTTTTTAACT+GGG | + | chr4_3:66507890-66507909 | Msa0657060:intron | 10.0% |
| !!! | AATTAGTCAAACTTTTTATT+AGG | + | chr4_3:66506399-66506418 | Msa0657060:intron | 15.0% |
| !! | TTCTGTTATCTATTAAAAAA+AGG | - | chr4_3:66506873-66506892 | None:intergenic | 15.0% |
| !!! | TTAATTTCAATTTTGTAACT+TGG | + | chr4_3:66507486-66507505 | Msa0657060:intron | 15.0% |
| !! | AGCAAAAAAAAAAAAAAGAT+AGG | - | chr4_3:66508082-66508101 | None:intergenic | 15.0% |
| !!! | TTTTTGCAGTATAATAAAAA+GGG | - | chr4_3:66508689-66508708 | None:intergenic | 15.0% |
| !!! | TTTTTTGCAGTATAATAAAA+AGG | - | chr4_3:66508690-66508709 | None:intergenic | 15.0% |
| !!! | TCTTTCATTTTTTGATGATT+TGG | + | chr4_3:66504852-66504871 | Msa0657060:intron | 20.0% |
| !!! | TTTTTTGATGATTTGGTATT+TGG | + | chr4_3:66504859-66504878 | Msa0657060:intron | 20.0% |
| !!! | TTTTTGATGATTTGGTATTT+GGG | + | chr4_3:66504860-66504879 | Msa0657060:intron | 20.0% |
| !!! | TGTTTTTTTGTTTTGAATTC+AGG | + | chr4_3:66504916-66504935 | Msa0657060:intron | 20.0% |
| !! | ATTTATTGAGTCATTGTATT+TGG | + | chr4_3:66505242-66505261 | Msa0657060:intron | 20.0% |
| !! | ATTGCAATATTCATCAAAAT+TGG | + | chr4_3:66505412-66505431 | Msa0657060:intron | 20.0% |
| !! | TAAAAACACAATGTAATTGT+AGG | - | chr4_3:66505518-66505537 | None:intergenic | 20.0% |
| !!! | ATAAAACATATCCTTTTGAA+TGG | - | chr4_3:66505563-66505582 | None:intergenic | 20.0% |
| !! | AACATTTCCCTTTATAAAAA+GGG | - | chr4_3:66506189-66506208 | None:intergenic | 20.0% |
| !! | TAACATTTCCCTTTATAAAA+AGG | - | chr4_3:66506190-66506209 | None:intergenic | 20.0% |
| !! | TAAAGGTAGAAAAAAAATCT+TGG | + | chr4_3:66506242-66506261 | Msa0657060:intron | 20.0% |
| !! | AAACTAACAACAGTATATTA+TGG | + | chr4_3:66506630-66506649 | Msa0657060:intron | 20.0% |
| !! | AACTAACAACAGTATATTAT+GGG | + | chr4_3:66506631-66506650 | Msa0657060:intron | 20.0% |
| !!! | AAGGTTTTGAAATCTAATAT+TGG | + | chr4_3:66506791-66506810 | Msa0657060:intron | 20.0% |
| !! | AAATCTAATATTGGATGATA+AGG | + | chr4_3:66506800-66506819 | Msa0657060:intron | 20.0% |
| !! | AATCTAATATTGGATGATAA+GGG | + | chr4_3:66506801-66506820 | Msa0657060:intron | 20.0% |
| !! | ATTTGATATGATGAATAAAG+GGG | - | chr4_3:66506957-66506976 | None:intergenic | 20.0% |
| !! | CATTTGATATGATGAATAAA+GGG | - | chr4_3:66506958-66506977 | None:intergenic | 20.0% |
| !! | TATTGTATTTACTAGCTAAT+TGG | + | chr4_3:66507011-66507030 | Msa0657060:intron | 20.0% |
| !!! | TATTTCAGTTTTTTACAATC+AGG | - | chr4_3:66507160-66507179 | None:intergenic | 20.0% |
| !!! | ATCTAAGTGTAATTTGTTAA+GGG | - | chr4_3:66507941-66507960 | None:intergenic | 20.0% |
| !! | GTGAAATTATAGTTTGATTA+AGG | - | chr4_3:66508287-66508306 | None:intergenic | 20.0% |
| !!! | ATTACCAATTTTCTTCTAAT+CGG | + | chr4_3:66508616-66508635 | Msa0657060:intron | 20.0% |
| !!! | ATTGATTTTTTTATTGCCTT+TGG | + | chr4_3:66508981-66509000 | Msa0657060:intron | 20.0% |
| ! | AAACAAGGAAAACAATGAAA+AGG | - | chr4_3:66504478-66504497 | None:intergenic | 25.0% |
| !!! | TTTTGTTTTGAATTCAGGTT+AGG | + | chr4_3:66504921-66504940 | Msa0657060:intron | 25.0% |
| ! | AAGATAATTGAAACAACATC+TGG | - | chr4_3:66505047-66505066 | None:intergenic | 25.0% |
| !!! | TTGTGTTGATAATTTCAATG+TGG | + | chr4_3:66505113-66505132 | Msa0657060:CDS | 25.0% |
| !!! | TGTGTTGATAATTTCAATGT+GGG | + | chr4_3:66505114-66505133 | Msa0657060:CDS | 25.0% |
| ! | ATATTCATCAAAATTGGATC+TGG | + | chr4_3:66505418-66505437 | Msa0657060:intron | 25.0% |
| !!! | TATCCTTTTGAATGGATTAA+GGG | - | chr4_3:66505555-66505574 | None:intergenic | 25.0% |
| !!! | ATATCCTTTTGAATGGATTA+AGG | - | chr4_3:66505556-66505575 | None:intergenic | 25.0% |
| !!! | GTTATGGAATGCATTTTTTA+TGG | + | chr4_3:66505624-66505643 | Msa0657060:intron | 25.0% |
| !!! | TGCATTTTTTATGGTGTTAA+CGG | + | chr4_3:66505633-66505652 | Msa0657060:intron | 25.0% |
| ! | ATGAGTCAACAATATCAAAA+TGG | - | chr4_3:66506062-66506081 | None:intergenic | 25.0% |
| !!! | GAATACTTTTGAAACATCAA+TGG | - | chr4_3:66506159-66506178 | None:intergenic | 25.0% |
| ! | ACATTTCCCTTTATAAAAAG+GGG | - | chr4_3:66506188-66506207 | None:intergenic | 25.0% |
| ! | TTCTCAAATGATGAAAAGAT+AGG | - | chr4_3:66506593-66506612 | None:intergenic | 25.0% |
| !! | ATACTGTTGTTAGTTTCAAA+AGG | - | chr4_3:66506626-66506645 | None:intergenic | 25.0% |
| ! | ACTAACAACAGTATATTATG+GGG | + | chr4_3:66506632-66506651 | Msa0657060:intron | 25.0% |
| !! | TTTAATTTCTACTTTGCTGA+AGG | + | chr4_3:66506744-66506763 | Msa0657060:intron | 25.0% |
| ! | TTAATTTCTACTTTGCTGAA+GGG | + | chr4_3:66506745-66506764 | Msa0657060:intron | 25.0% |
| ! | AGTGGCAATAAAAAATCTTA+AGG | + | chr4_3:66506772-66506791 | Msa0657060:intron | 25.0% |
| ! | CCATTTGATATGATGAATAA+AGG | - | chr4_3:66506959-66506978 | None:intergenic | 25.0% |
| ! | CCTTTATTCATCATATCAAA+TGG | + | chr4_3:66506956-66506975 | Msa0657060:intron | 25.0% |
| ! | ATTTCATCTTAGTTCATGTT+TGG | + | chr4_3:66507179-66507198 | Msa0657060:intron | 25.0% |
| ! | AAATAGATACTATCTTGAGT+AGG | + | chr4_3:66507289-66507308 | Msa0657060:intron | 25.0% |
| ! | AATAGATACTATCTTGAGTA+GGG | + | chr4_3:66507290-66507309 | Msa0657060:intron | 25.0% |
| ! | AGAAATCAGTCTTAATTTCA+TGG | + | chr4_3:66507378-66507397 | Msa0657060:intron | 25.0% |
| ! | GAGCTTAAATTAATCCAAAT+TGG | - | chr4_3:66507405-66507424 | None:intergenic | 25.0% |
| ! | AGACTCAATTTATACAAGAT+TGG | - | chr4_3:66507451-66507470 | None:intergenic | 25.0% |
| !! | AATGTATGTAAGTTCAAGTT+TGG | + | chr4_3:66507632-66507651 | Msa0657060:intron | 25.0% |
| ! | TATTGTCAAACTTGACATTA+GGG | - | chr4_3:66507734-66507753 | None:intergenic | 25.0% |
| !!! | GATCTAAGTGTAATTTGTTA+AGG | - | chr4_3:66507942-66507961 | None:intergenic | 25.0% |
| ! | TGAAGAGGTTGTTTATTTAT+TGG | + | chr4_3:66508054-66508073 | Msa0657060:intron | 25.0% |
| ! | TGTGTGAACAATTCTTAAAA+CGG | - | chr4_3:66508112-66508131 | None:intergenic | 25.0% |
| ! | AACAACCTAATAAACATTGA+TGG | + | chr4_3:66508147-66508166 | Msa0657060:intron | 25.0% |
| !! | GTTTAAAATTAAGTGAGCTA+GGG | - | chr4_3:66508173-66508192 | None:intergenic | 25.0% |
| !! | CTTTTTCTGTGTCTTTTAAA+AGG | - | chr4_3:66508206-66508225 | None:intergenic | 25.0% |
| ! | ATTGTACCATAATCACAAAT+TGG | - | chr4_3:66508503-66508522 | None:intergenic | 25.0% |
| ! | ATTTGTGATTATGGTACAAT+CGG | + | chr4_3:66508503-66508522 | Msa0657060:intron | 25.0% |
| !! | AGAAAATTGGTAATCAGAAA+AGG | - | chr4_3:66508610-66508629 | None:intergenic | 25.0% |
| ! | ATTAATGTACACAATCCAAA+TGG | - | chr4_3:66508654-66508673 | None:intergenic | 25.0% |
| ! | TCAAGTTTATATACTGCTTA+TGG | + | chr4_3:66509050-66509069 | Msa0657060:intron | 25.0% |
| ! | AGAAATTGGAGAAAAGTTAT+GGG | + | chr4_3:66509104-66509123 | Msa0657060:CDS | 25.0% |
| !!! | TTGAGCATTGAATAATTTGT+TGG | + | chr4_3:66509168-66509187 | Msa0657060:three_prime_UTR | 25.0% |
| ! | TGATATCCAATTTCCAAAAA+GGG | - | chr4_3:66509206-66509225 | None:intergenic | 25.0% |
| ! | TTGATATCCAATTTCCAAAA+AGG | - | chr4_3:66509207-66509226 | None:intergenic | 25.0% |
| !!! | TTTTGGAAATTGGATATCAA+TGG | + | chr4_3:66509207-66509226 | Msa0657060:three_prime_UTR | 25.0% |
| !!! | GTATAAATCCCATTTTTGAA+TGG | + | chr4_3:66509356-66509375 | Msa0657060:three_prime_UTR | 25.0% |
| !! | TCATTGTTTTCCTTGTTTGT+TGG | + | chr4_3:66504480-66504499 | Msa0657060:five_prime_UTR | 30.0% |
| !! | CATTGTTTTCCTTGTTTGTT+GGG | + | chr4_3:66504481-66504500 | Msa0657060:five_prime_UTR | 30.0% |
| !! | GAGTTTTATAAGCTCTTGTT+TGG | - | chr4_3:66504566-66504585 | None:intergenic | 30.0% |
| ! | ATCAATAGGTTGAATAACAC+AGG | - | chr4_3:66504800-66504819 | None:intergenic | 30.0% |
| TCAACCTATTGATATGATCA+AGG | + | chr4_3:66504807-66504826 | Msa0657060:CDS | 30.0% | |
| CATACCTTGATCATATCAAT+AGG | - | chr4_3:66504814-66504833 | None:intergenic | 30.0% | |
| ACAACATCTGGAAAAAAAGA+AGG | - | chr4_3:66505035-66505054 | None:intergenic | 30.0% | |
| ! | TTTGATTGCTTTGTTCTTAG+TGG | + | chr4_3:66505083-66505102 | Msa0657060:intron | 30.0% |
| !! | TTTTAGATCTGTGAGTTGAA+GGG | + | chr4_3:66505186-66505205 | Msa0657060:intron | 30.0% |
| !! | TGAGTCATTGTATTTGGTTT+TGG | + | chr4_3:66505248-66505267 | Msa0657060:intron | 30.0% |
| ! | ATCAAAATTGGATCTGGAAT+TGG | + | chr4_3:66505424-66505443 | Msa0657060:intron | 30.0% |
| !! | GCTCTGAAAGAAATTACAAA+AGG | - | chr4_3:66505454-66505473 | None:intergenic | 30.0% |
| ACACAATGTAATTGTAGGAT+GGG | - | chr4_3:66505513-66505532 | None:intergenic | 30.0% | |
| AACACAATGTAATTGTAGGA+TGG | - | chr4_3:66505514-66505533 | None:intergenic | 30.0% | |
| TTAACGGTTGTCTTACTTAT+TGG | + | chr4_3:66505649-66505668 | Msa0657060:intron | 30.0% | |
| CTTGACAAATAAAGCAATTG+AGG | + | chr4_3:66505692-66505711 | Msa0657060:CDS | 30.0% | |
| ! | TTGACACTTGCTAAAAGATT+TGG | - | chr4_3:66506102-66506121 | None:intergenic | 30.0% |
| ! | CACAAACCCCTTTTTATAAA+GGG | + | chr4_3:66506179-66506198 | Msa0657060:intron | 30.0% |
| AAATGTTAACTTATGCCCTT+GGG | + | chr4_3:66506202-66506221 | Msa0657060:intron | 30.0% | |
| GCATAAGTTAAAAAGGCTAA+AGG | + | chr4_3:66506225-66506244 | Msa0657060:intron | 30.0% | |
| ACAAGTTAAGGAGCTTAAAA+TGG | - | chr4_3:66506336-66506355 | None:intergenic | 30.0% | |
| AACTCCACAAAAATGAAACA+GGG | - | chr4_3:66506531-66506550 | None:intergenic | 30.0% | |
| AAACTCCACAAAAATGAAAC+AGG | - | chr4_3:66506532-66506551 | None:intergenic | 30.0% | |
| ! | TTTTATCTACTGTGGTGTAA+AGG | - | chr4_3:66506923-66506942 | None:intergenic | 30.0% |
| TGTATTTACTAGCTAATTGG+TGG | + | chr4_3:66507014-66507033 | Msa0657060:intron | 30.0% | |
| GTATTTACTAGCTAATTGGT+GGG | + | chr4_3:66507015-66507034 | Msa0657060:intron | 30.0% | |
| !!! | TACGAGTCTAGTTTTGAAAA+GGG | - | chr4_3:66507059-66507078 | None:intergenic | 30.0% |
| !!! | ATACGAGTCTAGTTTTGAAA+AGG | - | chr4_3:66507060-66507079 | None:intergenic | 30.0% |
| ATACAACTATAGCACAAGAA+AGG | - | chr4_3:66507117-66507136 | None:intergenic | 30.0% | |
| ACTTGAGTTTGAATTGAACT+AGG | - | chr4_3:66507345-66507364 | None:intergenic | 30.0% | |
| CTTAATTTCATGGTCCAATT+TGG | + | chr4_3:66507388-66507407 | Msa0657060:intron | 30.0% | |
| GTATTGTCAAACTTGACATT+AGG | - | chr4_3:66507735-66507754 | None:intergenic | 30.0% | |
| !! | CGATTGCTACAATTTAGTTT+TGG | + | chr4_3:66507996-66508015 | Msa0657060:intron | 30.0% |
| ! | GGTTTAAAATTAAGTGAGCT+AGG | - | chr4_3:66508174-66508193 | None:intergenic | 30.0% |
| !! | GTTCTTTGAAATAGTGAATC+TGG | + | chr4_3:66508308-66508327 | Msa0657060:intron | 30.0% |
| AACTAAATATGCCATCTCTT+GGG | - | chr4_3:66508387-66508406 | None:intergenic | 30.0% | |
| TAACTAAATATGCCATCTCT+TGG | - | chr4_3:66508388-66508407 | None:intergenic | 30.0% | |
| TGCATTCCAATTTGTGATTA+TGG | + | chr4_3:66508494-66508513 | Msa0657060:intron | 30.0% | |
| ! | TTTCTAGTCTAAGTCATGTA+AGG | + | chr4_3:66508577-66508596 | Msa0657060:intron | 30.0% |
| TTCTAGTCTAAGTCATGTAA+GGG | + | chr4_3:66508578-66508597 | Msa0657060:intron | 30.0% | |
| ATCTCCGATTAGAAGAAAAT+TGG | - | chr4_3:66508623-66508642 | None:intergenic | 30.0% | |
| TGAGTCTTCACATAATCAAA+TGG | - | chr4_3:66508797-66508816 | None:intergenic | 30.0% | |
| AATCCGGTGTAAAATTTGAA+GGG | - | chr4_3:66508908-66508927 | None:intergenic | 30.0% | |
| TAGCTAGAAAAACATACCAA+AGG | - | chr4_3:66509000-66509019 | None:intergenic | 30.0% | |
| ! | CATAACTTTTCTCCAATTTC+TGG | - | chr4_3:66509105-66509124 | None:intergenic | 30.0% |
| CAGAAATTGGAGAAAAGTTA+TGG | + | chr4_3:66509103-66509122 | Msa0657060:CDS | 30.0% | |
| AATTAGTCATGCAATTCAAG+CGG | + | chr4_3:66509255-66509274 | Msa0657060:three_prime_UTR | 30.0% | |
| TATGATATGATATGATGCGT+TGG | + | chr4_3:66509319-66509338 | Msa0657060:three_prime_UTR | 30.0% | |
| CAAGTTCTCCATTCAAAAAT+GGG | - | chr4_3:66509367-66509386 | None:intergenic | 30.0% | |
| ACAAGTTCTCCATTCAAAAA+TGG | - | chr4_3:66509368-66509387 | None:intergenic | 30.0% | |
| ATAACATGTACAATATCTCG+TGG | + | chr4_3:66509536-66509555 | Msa0657060:three_prime_UTR | 30.0% | |
| TAACATGTACAATATCTCGT+GGG | + | chr4_3:66509537-66509556 | Msa0657060:three_prime_UTR | 30.0% | |
| TCTTCTTAACCCAACAAACA+AGG | - | chr4_3:66504493-66504512 | None:intergenic | 35.0% | |
| !!! | AAGCTCTTGTTTGGTTTTTG+TGG | - | chr4_3:66504557-66504576 | None:intergenic | 35.0% |
| AAATGAAGCGAAGAAAACGA+GGG | - | chr4_3:66504656-66504675 | None:intergenic | 35.0% | |
| AACTTCGCTAATACCAACAA+TGG | + | chr4_3:66504684-66504703 | Msa0657060:exon | 35.0% | |
| ACTTCGCTAATACCAACAAT+GGG | + | chr4_3:66504685-66504704 | Msa0657060:exon | 35.0% | |
| ! | AATTCAGGTTAGGATTCAAC+TGG | + | chr4_3:66504931-66504950 | Msa0657060:intron | 35.0% |
| ! | ATTCAGGTTAGGATTCAACT+GGG | + | chr4_3:66504932-66504951 | Msa0657060:intron | 35.0% |
| TTCTACCATGCTTAAGAATG+AGG | + | chr4_3:66504979-66504998 | Msa0657060:CDS | 35.0% | |
| TCTACCATGCTTAAGAATGA+GGG | + | chr4_3:66504980-66504999 | Msa0657060:CDS | 35.0% | |
| !! | CTTTTAGATCTGTGAGTTGA+AGG | + | chr4_3:66505185-66505204 | Msa0657060:intron | 35.0% |
| ! | TTTAGATCTGTGAGTTGAAG+GGG | + | chr4_3:66505187-66505206 | Msa0657060:intron | 35.0% |
| CTAAATCCATACCTCAACAA+AGG | - | chr4_3:66505281-66505300 | None:intergenic | 35.0% | |
| TTGTTGAGGTATGGATTTAG+TGG | + | chr4_3:66505281-66505300 | Msa0657060:intron | 35.0% | |
| ATGCAAAGGACTAATGACAA+AGG | - | chr4_3:66505602-66505621 | None:intergenic | 35.0% | |
| TTGTCATTAGTCCTTTGCAT+TGG | + | chr4_3:66505602-66505621 | Msa0657060:intron | 35.0% | |
| !! | TTAGTCCTTTGCATTGGTTA+TGG | + | chr4_3:66505608-66505627 | Msa0657060:intron | 35.0% |
| TCTACCAAAAAGCTCTATGT+GGG | + | chr4_3:66505739-66505758 | Msa0657060:CDS | 35.0% | |
| !! | TCAAAGTGTTGAGTTCTTCA+AGG | + | chr4_3:66505992-66506011 | Msa0657060:CDS | 35.0% |
| CCTTTATAAAAAGGGGTTTG+TGG | - | chr4_3:66506181-66506200 | None:intergenic | 35.0% | |
| ! | CCACAAACCCCTTTTTATAA+AGG | + | chr4_3:66506178-66506197 | Msa0657060:intron | 35.0% |
| GAAATGTTAACTTATGCCCT+TGG | + | chr4_3:66506201-66506220 | Msa0657060:intron | 35.0% | |
| AATGTTAACTTATGCCCTTG+GGG | + | chr4_3:66506203-66506222 | Msa0657060:intron | 35.0% | |
| !!! | CTTTTTAACTTATGCCCCAA+GGG | - | chr4_3:66506220-66506239 | None:intergenic | 35.0% |
| AAACAGCAAAGAAACAGAAC+AGG | - | chr4_3:66506494-66506513 | None:intergenic | 35.0% | |
| !! | GTTCTGTTTCTTTGCTGTTT+AGG | + | chr4_3:66506494-66506513 | Msa0657060:intron | 35.0% |
| !! | AATGCCCTGTTTCATTTTTG+TGG | + | chr4_3:66506524-66506543 | Msa0657060:intron | 35.0% |
| ACTGTGGTGTAAAGGAAATA+GGG | - | chr4_3:66506915-66506934 | None:intergenic | 35.0% | |
| TACTGTGGTGTAAAGGAAAT+AGG | - | chr4_3:66506916-66506935 | None:intergenic | 35.0% | |
| ATGAATAAAGGGGAAACTAG+GGG | - | chr4_3:66506947-66506966 | None:intergenic | 35.0% | |
| GATGAATAAAGGGGAAACTA+GGG | - | chr4_3:66506948-66506967 | None:intergenic | 35.0% | |
| TGATGAATAAAGGGGAAACT+AGG | - | chr4_3:66506949-66506968 | None:intergenic | 35.0% | |
| !!! | ACGAGTCTAGTTTTGAAAAG+GGG | - | chr4_3:66507058-66507077 | None:intergenic | 35.0% |
| ACTAGACTCGTATAGATCAA+AGG | + | chr4_3:66507067-66507086 | Msa0657060:intron | 35.0% | |
| AGTTTGAATTGAACTAGGTC+TGG | - | chr4_3:66507340-66507359 | None:intergenic | 35.0% | |
| TCATTGAGTTTCAAAAGTCG+GGG | - | chr4_3:66507427-66507446 | None:intergenic | 35.0% | |
| CTCATTGAGTTTCAAAAGTC+GGG | - | chr4_3:66507428-66507447 | None:intergenic | 35.0% | |
| GCTCATTGAGTTTCAAAAGT+CGG | - | chr4_3:66507429-66507448 | None:intergenic | 35.0% | |
| ! | ATTGAGTCTTTTATGCTCAG+TGG | + | chr4_3:66507462-66507481 | Msa0657060:intron | 35.0% |
| ! | TTGAGTCTTTTATGCTCAGT+GGG | + | chr4_3:66507463-66507482 | Msa0657060:intron | 35.0% |
| TAAGAGATACACGAAGATGA+AGG | + | chr4_3:66507768-66507787 | Msa0657060:intron | 35.0% | |
| ACGAAGATGAAGGTTATATC+TGG | + | chr4_3:66507778-66507797 | Msa0657060:intron | 35.0% | |
| !! | GCATTTCTTTCTAGTTGGAT+AGG | + | chr4_3:66507912-66507931 | Msa0657060:intron | 35.0% |
| AATTGTAGCAATCGCACTAT+AGG | - | chr4_3:66507990-66508009 | None:intergenic | 35.0% | |
| TTCACACATCAAAAGTGAAC+TGG | + | chr4_3:66508124-66508143 | Msa0657060:intron | 35.0% | |
| TAGGGCCATCAATGTTTATT+AGG | - | chr4_3:66508155-66508174 | None:intergenic | 35.0% | |
| CAACTTACAGCAACAAAACA+AGG | - | chr4_3:66508234-66508253 | None:intergenic | 35.0% | |
| !!! | CTTGTTTTGTTGCTGTAAGT+TGG | + | chr4_3:66508232-66508251 | Msa0657060:intron | 35.0% |
| !! | AGTGAATCTGGTTCTTTATC+TGG | + | chr4_3:66508320-66508339 | Msa0657060:intron | 35.0% |
| GAACATAGTACCATTGACAT+TGG | - | chr4_3:66508346-66508365 | None:intergenic | 35.0% | |
| GTTCAAGACACATATTGCAA+GGG | - | chr4_3:66508447-66508466 | None:intergenic | 35.0% | |
| AGTTCAAGACACATATTGCA+AGG | - | chr4_3:66508448-66508467 | None:intergenic | 35.0% | |
| CGGAGATATGATATTCCATT+TGG | + | chr4_3:66508636-66508655 | Msa0657060:intron | 35.0% | |
| AGAAGAGATTCAGTAGCAAA+TGG | - | chr4_3:66508726-66508745 | None:intergenic | 35.0% | |
| TGCTACTGAATCTCTTCTTT+AGG | + | chr4_3:66508728-66508747 | Msa0657060:intron | 35.0% | |
| GAATCCGGTGTAAAATTTGA+AGG | - | chr4_3:66508909-66508928 | None:intergenic | 35.0% | |
| AGAGAATAGTACCATGACAT+GGG | - | chr4_3:66508957-66508976 | None:intergenic | 35.0% | |
| AAGAGAATAGTACCATGACA+TGG | - | chr4_3:66508958-66508977 | None:intergenic | 35.0% | |
| ! | GGAGAAAAGTTATGGGTTAT+AGG | + | chr4_3:66509111-66509130 | Msa0657060:CDS | 35.0% |
| ! | AAGTTATGGGTTATAGGTGA+TGG | + | chr4_3:66509117-66509136 | Msa0657060:exon | 35.0% |
| !! | TAATTTGTTGGCTGTGTTGT+AGG | + | chr4_3:66509180-66509199 | Msa0657060:three_prime_UTR | 35.0% |
| ATTAGTCATGCAATTCAAGC+GGG | + | chr4_3:66509256-66509275 | Msa0657060:three_prime_UTR | 35.0% | |
| GAAGTGAAGAACGAATCTAG+TGG | - | chr4_3:66504591-66504610 | None:intergenic | 40.0% | |
| GAAATGAAGCGAAGAAAACG+AGG | - | chr4_3:66504657-66504676 | None:intergenic | 40.0% | |
| AACACCCTCATTCTTAAGCA+TGG | - | chr4_3:66504987-66505006 | None:intergenic | 40.0% | |
| ! | ATGCTTAAGAATGAGGGTGT+TGG | + | chr4_3:66504986-66505005 | Msa0657060:CDS | 40.0% |
| CAACTCACAGATCTAAAAGC+AGG | - | chr4_3:66505184-66505203 | None:intergenic | 40.0% | |
| TTGGACTTCATCCTTTGTTG+AGG | + | chr4_3:66505267-66505286 | Msa0657060:intron | 40.0% | |
| CTTCATCCTTTGTTGAGGTA+TGG | + | chr4_3:66505272-66505291 | Msa0657060:intron | 40.0% | |
| TAAGCTGAATCACTTCTTGC+AGG | + | chr4_3:66505308-66505327 | Msa0657060:intron | 40.0% | |
| AAGCTGAATCACTTCTTGCA+GGG | + | chr4_3:66505309-66505328 | Msa0657060:intron | 40.0% | |
| CAACTCACCTAAATGTTCCA+AGG | - | chr4_3:66505380-66505399 | None:intergenic | 40.0% | |
| CAGCCCTTAATCCATTCAAA+AGG | + | chr4_3:66505549-66505568 | Msa0657060:intron | 40.0% | |
| GCATTCCATAACCAATGCAA+AGG | - | chr4_3:66505616-66505635 | None:intergenic | 40.0% | |
| AAAGCAATTGAGGCCAATGA+TGG | + | chr4_3:66505702-66505721 | Msa0657060:CDS | 40.0% | |
| !! | CATAGAGCTTTTTGGTAGAG+TGG | - | chr4_3:66505738-66505757 | None:intergenic | 40.0% |
| CTCTACCAAAAAGCTCTATG+TGG | + | chr4_3:66505738-66505757 | Msa0657060:CDS | 40.0% | |
| ATGAAGGGATTCTTTCACTG+TGG | + | chr4_3:66505904-66505923 | Msa0657060:CDS | 40.0% | |
| AGTCATTTCACCTAGACCAA+CGG | - | chr4_3:66506021-66506040 | None:intergenic | 40.0% | |
| TCTAGGTGAAATGACTACTG+TGG | + | chr4_3:66506025-66506044 | Msa0657060:CDS | 40.0% | |
| !!! | CCTTTTTAACTTATGCCCCA+AGG | - | chr4_3:66506221-66506240 | None:intergenic | 40.0% |
| CCTTGGGGCATAAGTTAAAA+AGG | + | chr4_3:66506218-66506237 | Msa0657060:intron | 40.0% | |
| !! | CATGTTAACTTGTGCCCTTA+GGG | - | chr4_3:66506360-66506379 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTT+AGG | - | chr4_3:66506361-66506380 | None:intergenic | 40.0% |
| TAGGGAGGAAGATTAGATGA+TGG | - | chr4_3:66506897-66506916 | None:intergenic | 40.0% | |
| ! | CTAGGGGATTTTATCTACTG+TGG | - | chr4_3:66506931-66506950 | None:intergenic | 40.0% |
| GATACTATCTTGAGTAGGGT+TGG | + | chr4_3:66507294-66507313 | Msa0657060:intron | 40.0% | |
| !! | AGAAGCATCACTGTTATTCG+AGG | + | chr4_3:66507587-66507606 | Msa0657060:intron | 40.0% |
| ! | CTTTCTGTACTGAGTTGAGT+AGG | + | chr4_3:66507680-66507699 | Msa0657060:intron | 40.0% |
| TGTCAAACTTGACATTAGGG+CGG | - | chr4_3:66507731-66507750 | None:intergenic | 40.0% | |
| ! | ACTGGGCATTTCTTTCTAGT+TGG | + | chr4_3:66507907-66507926 | Msa0657060:intron | 40.0% |
| TAACTCAGTGAACTGTGAAG+AGG | + | chr4_3:66508039-66508058 | Msa0657060:intron | 40.0% | |
| !! | TCTTTTAAAAGGCTGACGCA+TGG | - | chr4_3:66508195-66508214 | None:intergenic | 40.0% |
| CTTTATCTGGCCAATGTCAA+TGG | + | chr4_3:66508333-66508352 | Msa0657060:intron | 40.0% | |
| TATGGTACAATCGGTAGTCT+TGG | + | chr4_3:66508512-66508531 | Msa0657060:intron | 40.0% | |
| TTAGGTGCAAGTAGTGTATC+TGG | + | chr4_3:66508746-66508765 | Msa0657060:intron | 40.0% | |
| GAGGGAAAATATCCATACAC+CGG | + | chr4_3:66508842-66508861 | Msa0657060:CDS | 40.0% | |
| ! | GGACCCTTCAAATTTTACAC+CGG | + | chr4_3:66508902-66508921 | Msa0657060:CDS | 40.0% |
| GAGAATAGTACCATGACATG+GGG | - | chr4_3:66508956-66508975 | None:intergenic | 40.0% | |
| !!! | TTTTCTCCAATTTCTGGAGC+TGG | - | chr4_3:66509099-66509118 | None:intergenic | 40.0% |
| !! | TGTAGGCCCTTTTTGGAAAT+TGG | + | chr4_3:66509197-66509216 | Msa0657060:three_prime_UTR | 40.0% |
| TTAGTCATGCAATTCAAGCG+GGG | + | chr4_3:66509257-66509276 | Msa0657060:three_prime_UTR | 40.0% | |
| ATGTGTCGAAAAGATGTCTG+AGG | - | chr4_3:66509427-66509446 | None:intergenic | 40.0% | |
| TTCTTCTCGTCTCCCATTGT+TGG | - | chr4_3:66504700-66504719 | None:intergenic | 45.0% | |
| ! | TTGACGAAAGGCTTGATGGT+TGG | - | chr4_3:66504751-66504770 | None:intergenic | 45.0% |
| ACCATCAAGCCTTTCGTCAA+TGG | + | chr4_3:66504751-66504770 | Msa0657060:CDS | 45.0% | |
| ACCATTGACGAAAGGCTTGA+TGG | - | chr4_3:66504755-66504774 | None:intergenic | 45.0% | |
| ATCAAGCCTTTCGTCAATGG+TGG | + | chr4_3:66504754-66504773 | Msa0657060:CDS | 45.0% | |
| GTTAGGATTCAACTGGGTCA+AGG | + | chr4_3:66504938-66504957 | Msa0657060:CDS | 45.0% | |
| !! | GGGTGTTGGTGCTTTCTATA+AGG | + | chr4_3:66505000-66505019 | Msa0657060:CDS | 45.0% |
| !! | AGCTTTTTGGTAGAGTGGCA+GGG | - | chr4_3:66505733-66505752 | None:intergenic | 45.0% |
| ! | TCAGCCCACATAGAGCTTTT+TGG | - | chr4_3:66505746-66505765 | None:intergenic | 45.0% |
| !! | AGTTGGTAGTCCAGCTGATT+TGG | + | chr4_3:66505788-66505807 | Msa0657060:CDS | 45.0% |
| TTTGGCACTCATTCGTATGC+AGG | + | chr4_3:66505806-66505825 | Msa0657060:CDS | 45.0% | |
| !! | GGAAGGCGTTTGTGTAGTTT+CGG | - | chr4_3:66505860-66505879 | None:intergenic | 45.0% |
| AAACTACACAAACGCCTTCC+AGG | + | chr4_3:66505860-66505879 | Msa0657060:CDS | 45.0% | |
| TTCCAGGCACTTTACCGTAT+CGG | + | chr4_3:66505876-66505895 | Msa0657060:CDS | 45.0% | |
| GGGATTCTTTCACTGTGGAA+AGG | + | chr4_3:66505909-66505928 | Msa0657060:CDS | 45.0% | |
| !! | TTTCACTGTGGAAAGGTGCT+GGG | + | chr4_3:66505916-66505935 | Msa0657060:CDS | 45.0% |
| ! | AAGAGCCATGGCATTGAACA+TGG | + | chr4_3:66505950-66505969 | Msa0657060:CDS | 45.0% |
| ! | AGAGCCATGGCATTGAACAT+GGG | + | chr4_3:66505951-66505970 | Msa0657060:CDS | 45.0% |
| GAGTTCTTCAAGGATACCGT+TGG | + | chr4_3:66506002-66506021 | Msa0657060:CDS | 45.0% | |
| ! | TTCAAGGATACCGTTGGTCT+AGG | + | chr4_3:66506008-66506027 | Msa0657060:CDS | 45.0% |
| GGTGAAATGACTACTGTGGT+TGG | + | chr4_3:66506029-66506048 | Msa0657060:CDS | 45.0% | |
| !! | CTCCTTAACTTGTGCCCTAA+GGG | + | chr4_3:66506343-66506362 | Msa0657060:intron | 45.0% |
| ACTTTGCTGAAGGGATTGAG+TGG | + | chr4_3:66506754-66506773 | Msa0657060:intron | 45.0% | |
| GTGGTGTAAAGGAAATAGGG+AGG | - | chr4_3:66506912-66506931 | None:intergenic | 45.0% | |
| !! | TCACTCTCTAGCTAGCTTTC+TGG | + | chr4_3:66506983-66507002 | Msa0657060:intron | 45.0% |
| GAATTGAACTAGGTCTGGCT+TGG | - | chr4_3:66507335-66507354 | None:intergenic | 45.0% | |
| AGCATCACTGTTATTCGAGG+CGG | + | chr4_3:66507590-66507609 | Msa0657060:intron | 45.0% | |
| CTTTATGCACACCCAAGAGA+TGG | + | chr4_3:66508373-66508392 | Msa0657060:intron | 45.0% | |
| AAAGATGCAACCTGATGCTG+AGG | + | chr4_3:66508823-66508842 | Msa0657060:CDS | 45.0% | |
| AAGATGCAACCTGATGCTGA+GGG | + | chr4_3:66508824-66508843 | Msa0657060:CDS | 45.0% | |
| ! | GGATATTTTCCCTCAGCATC+AGG | - | chr4_3:66508836-66508855 | None:intergenic | 45.0% |
| GCTGTCAAGACCTTCAAATC+TGG | + | chr4_3:66508878-66508897 | Msa0657060:CDS | 45.0% | |
| GTCAAGACCTTCAAATCTGG+AGG | + | chr4_3:66508881-66508900 | Msa0657060:CDS | 45.0% | |
| CAATCCTGACACAGTAGACA+GGG | - | chr4_3:66508931-66508950 | None:intergenic | 45.0% | |
| ACTGCTTATGGCAGATGACA+TGG | + | chr4_3:66509062-66509081 | Msa0657060:intron | 45.0% | |
| !!! | TAATTTATTCTTTTATAAAA+GGG | - | chr4_3:66506384-66506403 | None:intergenic | 5.0% |
| !!! | TTTTTATGTATTTTTTAATT+TGG | + | chr4_3:66509505-66509524 | Msa0657060:three_prime_UTR | 5.0% |
| !!! | TTTTATGTATTTTTTAATTT+GGG | + | chr4_3:66509506-66509525 | Msa0657060:three_prime_UTR | 5.0% |
| AAACCAGCAGCAACAGGCTT+AGG | - | chr4_3:66504724-66504743 | None:intergenic | 50.0% | |
| ! | GAAGCACCACCATTGACGAA+AGG | - | chr4_3:66504763-66504782 | None:intergenic | 50.0% |
| ! | TTCGTCAATGGTGGTGCTTC+TGG | + | chr4_3:66504763-66504782 | Msa0657060:CDS | 50.0% |
| TTCTTGCAGGGTCTATCAGC+TGG | + | chr4_3:66505321-66505340 | Msa0657060:intron | 50.0% | |
| TCTTGCAGGGTCTATCAGCT+GGG | + | chr4_3:66505322-66505341 | Msa0657060:intron | 50.0% | |
| GTCTATCAGCTGGGTTACTC+AGG | + | chr4_3:66505331-66505350 | Msa0657060:CDS | 50.0% | |
| AAATGTTCCAAGGCGTGCAG+TGG | - | chr4_3:66505370-66505389 | None:intergenic | 50.0% | |
| CTGCACGCCTTGGAACATTT+AGG | + | chr4_3:66505370-66505389 | Msa0657060:CDS | 50.0% | |
| !! | GCTTTTTGGTAGAGTGGCAG+GGG | - | chr4_3:66505732-66505751 | None:intergenic | 50.0% |
| !! | GAGCTTTTTGGTAGAGTGGC+AGG | - | chr4_3:66505734-66505753 | None:intergenic | 50.0% |
| GGTGCAATTGGAGCAACAGT+TGG | + | chr4_3:66505771-66505790 | Msa0657060:CDS | 50.0% | |
| CGAATGAGTGCCAAATCAGC+TGG | - | chr4_3:66505801-66505820 | None:intergenic | 50.0% | |
| ! | GATACGGTAAAGTGCCTGGA+AGG | - | chr4_3:66505877-66505896 | None:intergenic | 50.0% |
| ! | TACCGTATCGGTGCAGATGA+AGG | + | chr4_3:66505888-66505907 | Msa0657060:CDS | 50.0% |
| ! | ACCGTATCGGTGCAGATGAA+GGG | + | chr4_3:66505889-66505908 | Msa0657060:CDS | 50.0% |
| ! | TCCCTTCATCTGCACCGATA+CGG | - | chr4_3:66505893-66505912 | None:intergenic | 50.0% |
| ! | CTTTCACTGTGGAAAGGTGC+TGG | + | chr4_3:66505915-66505934 | Msa0657060:CDS | 50.0% |
| GCCTACTGTAGTAAGAGCCA+TGG | + | chr4_3:66505938-66505957 | Msa0657060:CDS | 50.0% | |
| GCCATGGCTCTTACTACAGT+AGG | - | chr4_3:66505942-66505961 | None:intergenic | 50.0% | |
| ! | GAGCCATGGCATTGAACATG+GGG | + | chr4_3:66505952-66505971 | Msa0657060:CDS | 50.0% |
| CATCCCCATGTTCAATGCCA+TGG | - | chr4_3:66505958-66505977 | None:intergenic | 50.0% | |
| !! | GCTCCTTAACTTGTGCCCTA+AGG | + | chr4_3:66506342-66506361 | Msa0657060:intron | 50.0% |
| TGCCCTTAGGGCACAAGTTA+AGG | - | chr4_3:66506348-66506367 | None:intergenic | 50.0% | |
| ! | GTACTGAGTTGAGTAGGCAC+AGG | + | chr4_3:66507686-66507705 | Msa0657060:intron | 50.0% |
| AGTTGAGTAGGCACAGGAGT+TGG | + | chr4_3:66507692-66507711 | Msa0657060:intron | 50.0% | |
| GAAGGGTCCTCCAGATTTGA+AGG | - | chr4_3:66508891-66508910 | None:intergenic | 50.0% | |
| GACACAGTAGACAGGGAATC+CGG | - | chr4_3:66508924-66508943 | None:intergenic | 50.0% | |
| GATTCCCTGTCTACTGTGTC+AGG | + | chr4_3:66508924-66508943 | Msa0657060:CDS | 50.0% | |
| GCAATCCTGACACAGTAGAC+AGG | - | chr4_3:66508932-66508951 | None:intergenic | 50.0% | |
| !! | CCAATTTCTGGAGCTGGTTG+AGG | - | chr4_3:66509093-66509112 | None:intergenic | 50.0% |
| CCTCAACCAGCTCCAGAAAT+TGG | + | chr4_3:66509090-66509109 | Msa0657060:CDS | 50.0% | |
| ! | GCTGTGTTGTAGGCCCTTTT+TGG | + | chr4_3:66509190-66509209 | Msa0657060:three_prime_UTR | 50.0% |
| AAGCCTAAGCCTGTTGCTGC+TGG | + | chr4_3:66504718-66504737 | Msa0657060:CDS | 55.0% | |
| !! | AGCCTGTTGCTGCTGGTTTC+TGG | + | chr4_3:66504725-66504744 | Msa0657060:CDS | 55.0% |
| ATCAGCTGGGTTACTCAGGC+AGG | + | chr4_3:66505335-66505354 | Msa0657060:CDS | 55.0% | |
| ACTTACACCACTGCACGCCT+TGG | + | chr4_3:66505360-66505379 | Msa0657060:CDS | 55.0% | |
| ! | TAGTTTCGGCGCTGAGCAAG+AGG | - | chr4_3:66505846-66505865 | None:intergenic | 55.0% |
| ! | CACCGATACGGTAAAGTGCC+TGG | - | chr4_3:66505881-66505900 | None:intergenic | 55.0% |
| CAGTCAAGAGAGCCGGTGTA+TGG | - | chr4_3:66508857-66508876 | None:intergenic | 55.0% | |
| GACAGCACAGTCAAGAGAGC+CGG | - | chr4_3:66508864-66508883 | None:intergenic | 55.0% | |
| CAGGATTGCTCCCCATGTCA+TGG | + | chr4_3:66508943-66508962 | Msa0657060:CDS | 55.0% | |
| GGCCAGAAACCAGCAGCAAC+AGG | - | chr4_3:66504730-66504749 | None:intergenic | 60.0% | |
| TGGCAGGGGCTTGCCATCAT+TGG | - | chr4_3:66505718-66505737 | None:intergenic | 60.0% | |
| ! | GCTCTATGTGGGCTGACTGC+TGG | + | chr4_3:66505750-66505769 | Msa0657060:CDS | 60.0% |
| GGGCTGACTGCTGGTGCAAT+TGG | + | chr4_3:66505759-66505778 | Msa0657060:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 66504428 | 66509675 | 66504428 | ID=Msa0657060;Name=Msa0657060 |
| chr4_3 | mRNA | 66504428 | 66509675 | 66504428 | ID=Msa0657060-mRNA-1;Parent=Msa0657060;Name=Msa0657060-mRNA-1;_AED=0.07;_eAED=0.07;_QI=275|0.66|0.85|0.85|1|1|7|543|332 |
| chr4_3 | exon | 66504428 | 66504828 | 66504428 | ID=Msa0657060-mRNA-1:exon:19134;Parent=Msa0657060-mRNA-1 |
| chr4_3 | exon | 66504938 | 66505021 | 66504938 | ID=Msa0657060-mRNA-1:exon:19135;Parent=Msa0657060-mRNA-1 |
| chr4_3 | exon | 66505103 | 66505195 | 66505103 | ID=Msa0657060-mRNA-1:exon:19136;Parent=Msa0657060-mRNA-1 |
| chr4_3 | exon | 66505330 | 66505391 | 66505330 | ID=Msa0657060-mRNA-1:exon:19137;Parent=Msa0657060-mRNA-1 |
| chr4_3 | exon | 66505689 | 66506050 | 66505689 | ID=Msa0657060-mRNA-1:exon:19138;Parent=Msa0657060-mRNA-1 |
| chr4_3 | exon | 66508750 | 66508964 | 66508750 | ID=Msa0657060-mRNA-1:exon:19139;Parent=Msa0657060-mRNA-1 |
| chr4_3 | exon | 66509076 | 66509675 | 66509076 | ID=Msa0657060-mRNA-1:exon:19140;Parent=Msa0657060-mRNA-1 |
| chr4_3 | five_prime_UTR | 66504428 | 66504702 | 66504428 | ID=Msa0657060-mRNA-1:five_prime_utr;Parent=Msa0657060-mRNA-1 |
| chr4_3 | CDS | 66504703 | 66504828 | 66504703 | ID=Msa0657060-mRNA-1:cds;Parent=Msa0657060-mRNA-1 |
| chr4_3 | CDS | 66504938 | 66505021 | 66504938 | ID=Msa0657060-mRNA-1:cds;Parent=Msa0657060-mRNA-1 |
| chr4_3 | CDS | 66505103 | 66505195 | 66505103 | ID=Msa0657060-mRNA-1:cds;Parent=Msa0657060-mRNA-1 |
| chr4_3 | CDS | 66505330 | 66505391 | 66505330 | ID=Msa0657060-mRNA-1:cds;Parent=Msa0657060-mRNA-1 |
| chr4_3 | CDS | 66505689 | 66506050 | 66505689 | ID=Msa0657060-mRNA-1:cds;Parent=Msa0657060-mRNA-1 |
| chr4_3 | CDS | 66508750 | 66508964 | 66508750 | ID=Msa0657060-mRNA-1:cds;Parent=Msa0657060-mRNA-1 |
| chr4_3 | CDS | 66509076 | 66509132 | 66509076 | ID=Msa0657060-mRNA-1:cds;Parent=Msa0657060-mRNA-1 |
| chr4_3 | three_prime_UTR | 66509133 | 66509675 | 66509133 | ID=Msa0657060-mRNA-1:three_prime_utr;Parent=Msa0657060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
