AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0192290

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0192290 MtrunA17_Chr2g0282561 95.614 114 3 1 1 114 1 112 9.82e-75 216
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0192290 AT1G28330.1 59.504 121 41 5 1 114 3 122 2.66e-38 125
Msa0192290 AT1G28330.4 58.678 121 42 5 1 114 3 122 1.85e-37 123
Msa0192290 AT2G33830.2 59.649 114 36 5 5 114 1 108 2.48e-37 122
Msa0192290 AT2G33830.1 57.143 112 40 4 5 114 1 106 1.61e-35 117
Msa0192290 AT5G44300.1 55.172 116 46 4 1 114 3 114 2.35e-35 117
Msa0192290 AT1G28330.5 58.182 110 38 5 1 103 3 111 1.50e-30 105
Msa0192290 AT1G28330.6 58.182 110 38 5 1 103 3 111 1.50e-30 105
Msa0192290 AT1G28330.3 54.167 120 47 5 1 113 3 121 1.96e-30 105
Msa0192290 AT1G28330.2 54.167 120 47 5 1 113 3 121 1.96e-30 105

Find 55 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCAAAGTTTGTCTAACATTT+TGG 0.088107 2_1:-8044073 None:intergenic
GATGTGCCACCAAAACTTTC+TGG 0.166653 2_1:+8044896 Msa0192290:exon
TTAGCTAGATAAACCTATTA+AGG 0.299960 2_1:-8045089 None:intergenic
CCAAAATGTTAGACAAACTT+TGG 0.309017 2_1:+8044073 Msa0192290:exon
TGGAGGAGCGTGTTCAATCC+TGG 0.327841 2_1:+8044425 Msa0192290:CDS
TTATCTAGCTTTGCCTTAAT+AGG 0.332499 2_1:+8045076 Msa0192290:three_prime_UTR
CACGTAAAGTTGACAACGTT+TGG 0.347744 2_1:+8044405 Msa0192290:CDS
GCAATCAACCCAGAAAGTTT+TGG 0.376912 2_1:-8044905 None:intergenic
TCAAGGCCACGCTCAGGTTG+AGG 0.384188 2_1:-8044114 None:intergenic
CAAAATGTTAGACAAACTTT+GGG 0.385846 2_1:+8044074 Msa0192290:exon
CTTTGGGATGATACCGTTGC+TGG 0.399829 2_1:+8044090 Msa0192290:CDS
AACTCTGCTACTAAGACAAT+TGG 0.426460 2_1:+8044452 Msa0192290:CDS
GTTTATACCTTTGATGATGC+TGG 0.439938 2_1:-8044157 None:intergenic
CTTCTGAATATTGTAACAAA+TGG 0.444532 2_1:+8045185 Msa0192290:three_prime_UTR
ATTCCATCTTGGTAATAGCT+TGG 0.452319 2_1:+8045248 Msa0192290:three_prime_UTR
CAAGGCCACGCTCAGGTTGA+GGG 0.457180 2_1:-8044113 None:intergenic
ATGTGCCACCAAAACTTTCT+GGG 0.468880 2_1:+8044897 Msa0192290:exon
GATGGAATTGCACAGTTACA+TGG 0.475449 2_1:-8045233 None:intergenic
GGAGGAGCGTGTTCAATCCT+GGG 0.490368 2_1:+8044426 Msa0192290:CDS
TGGCAGACGATCAACAAAAC+AGG 0.493537 2_1:-8044941 None:intergenic
GATCAGATCACGACACGTAA+TGG 0.493690 2_1:-8044977 None:intergenic
TCAACTTTACGTGCCGATTG+AGG 0.495412 2_1:-8044395 None:intergenic
GACTCCAACGACACCTCAAT+CGG 0.504134 2_1:+8044382 Msa0192290:CDS
AGCTTCTCAAGGCCACGCTC+AGG 0.504351 2_1:-8044120 None:intergenic
ACCGGTGTTGTCGGTGTCGA+AGG 0.505007 2_1:-8044359 None:intergenic
TGAGGTGTCGTTGGAGTCAC+CGG 0.510899 2_1:-8044377 None:intergenic
TTGTATTTAGGTGTAGATGA+AGG 0.513685 2_1:+8044302 Msa0192290:intron
GTGATCGCAGGATGTACAGC+GGG 0.519197 2_1:+8044851 Msa0192290:intron
TTACGTGTCGTGATCTGATC+GGG 0.520466 2_1:+8044980 Msa0192290:three_prime_UTR
GTAACTGTGCAATTCCATCT+TGG 0.524557 2_1:+8045237 Msa0192290:three_prime_UTR
GTTGGAGTCACCGGTGTTGT+CGG 0.528758 2_1:-8044368 None:intergenic
TTAGTAGCAGAGTTACTCCC+AGG 0.531237 2_1:-8044443 None:intergenic
AGCGTGGCCTTGAGAAGCTT+AGG 0.531934 2_1:+8044124 Msa0192290:CDS
GGATGTACAGCGGGGACACA+AGG 0.536816 2_1:+8044860 Msa0192290:intron
CGTGCCGATTGAGGTGTCGT+TGG 0.538925 2_1:-8044386 None:intergenic
AATCCAAGCTATTACCAAGA+TGG 0.547872 2_1:-8045251 None:intergenic
ATTACGTGTCGTGATCTGAT+CGG 0.563489 2_1:+8044979 Msa0192290:three_prime_UTR
ACTAAGATGGAACTAAGACT+TGG 0.571418 2_1:-8044049 None:intergenic
TATTTAGGTGTAGATGAAGG+AGG 0.572856 2_1:+8044305 Msa0192290:intron
CTCAGGTTGAGGGCCAGCAA+CGG 0.587677 2_1:-8044103 None:intergenic
GTAAAGTTGACAACGTTTGG+AGG 0.589302 2_1:+8044408 Msa0192290:CDS
GCTGGCCCTCAACCTGAGCG+TGG 0.589408 2_1:+8044108 Msa0192290:CDS
ACATACCAATCATAGACAGT+GGG 0.591016 2_1:-8044509 None:intergenic
TTAGCTTCCTAAGCTTCTCA+AGG 0.592667 2_1:-8044131 None:intergenic
GCCTTCGACACCGACAACAC+CGG 0.604941 2_1:+8044358 Msa0192290:CDS
TATACCTTTGATGATGCTGG+TGG 0.618859 2_1:-8044154 None:intergenic
CTAACCACCAGCATCATCAA+AGG 0.620330 2_1:+8044150 Msa0192290:CDS
ACAAAACTCAAATTAATACA+AGG 0.623205 2_1:-8045054 None:intergenic
GATTAATCAACACTTACAGA+AGG 0.643218 2_1:-8045125 None:intergenic
AACATACCAATCATAGACAG+TGG 0.664521 2_1:-8044510 None:intergenic
CATACCAATCATAGACAGTG+GGG 0.727901 2_1:-8044508 None:intergenic
TGTGATCGCAGGATGTACAG+CGG 0.734662 2_1:+8044850 Msa0192290:intron
ATACCAATCATAGACAGTGG+GGG 0.749000 2_1:-8044507 None:intergenic
TGATCGCAGGATGTACAGCG+GGG 0.761714 2_1:+8044852 Msa0192290:intron
GTAATGGTGATACAGACACG+TGG 0.778111 2_1:-8044961 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATTCATTATATTATAGT+TGG - chr2_1:8044212-8044231 None:intergenic 10.0%
!!! ATTCATTTTAATTTGTATTT+AGG + chr2_1:8044290-8044309 Msa0192290:intron 10.0%
!! TATATTCATTATATTATAGT+TGG - chr2_1:8044212-8044231 None:intergenic 10.0%
!!! ATTCATTTTAATTTGTATTT+AGG + chr2_1:8044290-8044309 Msa0192290:intron 10.0%
!!! TTGATTCTATATTTTATTTG+TGG + chr2_1:8044643-8044662 Msa0192290:intron 15.0%
!! ACAAACATATAAAAATGAAT+TGG + chr2_1:8044821-8044840 Msa0192290:intron 15.0%
!! CAAACATATAAAAATGAATT+GGG + chr2_1:8044822-8044841 Msa0192290:intron 15.0%
!!! AAGAATTTTATATTACAAAG+TGG + chr2_1:8045277-8045296 Msa0192290:three_prime_UTR 15.0%
!!! TTGATTCTATATTTTATTTG+TGG + chr2_1:8044643-8044662 Msa0192290:intron 15.0%
!! ACAAACATATAAAAATGAAT+TGG + chr2_1:8044821-8044840 Msa0192290:intron 15.0%
!! CAAACATATAAAAATGAATT+GGG + chr2_1:8044822-8044841 Msa0192290:intron 15.0%
!!! AAGAATTTTATATTACAAAG+TGG + chr2_1:8045277-8045296 Msa0192290:three_prime_UTR 15.0%
!! ACAAAACTCAAATTAATACA+AGG - chr2_1:8045057-8045076 None:intergenic 20.0%
!! AATATTCAGAAGAAGAAAAA+AGG - chr2_1:8045177-8045196 None:intergenic 20.0%
!! ACAAAACTCAAATTAATACA+AGG - chr2_1:8045057-8045076 None:intergenic 20.0%
!! AATATTCAGAAGAAGAAAAA+AGG - chr2_1:8045177-8045196 None:intergenic 20.0%
! CAAAATGTTAGACAAACTTT+GGG + chr2_1:8044074-8044093 Msa0192290:exon 25.0%
! TGTATAGTTCTTCTAACAAA+AGG - chr2_1:8044711-8044730 None:intergenic 25.0%
! TTAGCTAGATAAACCTATTA+AGG - chr2_1:8045092-8045111 None:intergenic 25.0%
! CTTCTGAATATTGTAACAAA+TGG + chr2_1:8045185-8045204 Msa0192290:three_prime_UTR 25.0%
! CAAAATGTTAGACAAACTTT+GGG + chr2_1:8044074-8044093 Msa0192290:exon 25.0%
! TGTATAGTTCTTCTAACAAA+AGG - chr2_1:8044711-8044730 None:intergenic 25.0%
! TTAGCTAGATAAACCTATTA+AGG - chr2_1:8045092-8045111 None:intergenic 25.0%
! CTTCTGAATATTGTAACAAA+TGG + chr2_1:8045185-8045204 Msa0192290:three_prime_UTR 25.0%
!!! CTAACATTTTGGAACTAAGA+TGG - chr2_1:8044065-8044084 None:intergenic 30.0%
! CCAAAGTTTGTCTAACATTT+TGG - chr2_1:8044076-8044095 None:intergenic 30.0%
CCAAAATGTTAGACAAACTT+TGG + chr2_1:8044073-8044092 Msa0192290:exon 30.0%
TTGTATTTAGGTGTAGATGA+AGG + chr2_1:8044302-8044321 Msa0192290:intron 30.0%
ATGCAAATTATAAGAGTGGT+TGG - chr2_1:8044553-8044572 None:intergenic 30.0%
ATGCATGCAAATTATAAGAG+TGG - chr2_1:8044557-8044576 None:intergenic 30.0%
TGTTAGAAGAACTATACATG+TGG + chr2_1:8044713-8044732 Msa0192290:intron 30.0%
!! TTATCTAGCTTTGCCTTAAT+AGG + chr2_1:8045076-8045095 Msa0192290:three_prime_UTR 30.0%
GATTAATCAACACTTACAGA+AGG - chr2_1:8045128-8045147 None:intergenic 30.0%
!!! CTAACATTTTGGAACTAAGA+TGG - chr2_1:8044065-8044084 None:intergenic 30.0%
! CCAAAGTTTGTCTAACATTT+TGG - chr2_1:8044076-8044095 None:intergenic 30.0%
CCAAAATGTTAGACAAACTT+TGG + chr2_1:8044073-8044092 Msa0192290:exon 30.0%
TTGTATTTAGGTGTAGATGA+AGG + chr2_1:8044302-8044321 Msa0192290:intron 30.0%
ATGCAAATTATAAGAGTGGT+TGG - chr2_1:8044553-8044572 None:intergenic 30.0%
ATGCATGCAAATTATAAGAG+TGG - chr2_1:8044557-8044576 None:intergenic 30.0%
TGTTAGAAGAACTATACATG+TGG + chr2_1:8044713-8044732 Msa0192290:intron 30.0%
!! TTATCTAGCTTTGCCTTAAT+AGG + chr2_1:8045076-8045095 Msa0192290:three_prime_UTR 30.0%
GATTAATCAACACTTACAGA+AGG - chr2_1:8045128-8045147 None:intergenic 30.0%
ACTAAGATGGAACTAAGACT+TGG - chr2_1:8044052-8044071 None:intergenic 35.0%
!! GTTTATACCTTTGATGATGC+TGG - chr2_1:8044160-8044179 None:intergenic 35.0%
TATTTAGGTGTAGATGAAGG+AGG + chr2_1:8044305-8044324 Msa0192290:intron 35.0%
AACTCTGCTACTAAGACAAT+TGG + chr2_1:8044452-8044471 Msa0192290:CDS 35.0%
ACATACCAATCATAGACAGT+GGG - chr2_1:8044512-8044531 None:intergenic 35.0%
AACATACCAATCATAGACAG+TGG - chr2_1:8044513-8044532 None:intergenic 35.0%
! ATTCCATCTTGGTAATAGCT+TGG + chr2_1:8045248-8045267 Msa0192290:three_prime_UTR 35.0%
AATCCAAGCTATTACCAAGA+TGG - chr2_1:8045254-8045273 None:intergenic 35.0%
ACTAAGATGGAACTAAGACT+TGG - chr2_1:8044052-8044071 None:intergenic 35.0%
!! GTTTATACCTTTGATGATGC+TGG - chr2_1:8044160-8044179 None:intergenic 35.0%
TATTTAGGTGTAGATGAAGG+AGG + chr2_1:8044305-8044324 Msa0192290:intron 35.0%
AACTCTGCTACTAAGACAAT+TGG + chr2_1:8044452-8044471 Msa0192290:CDS 35.0%
ACATACCAATCATAGACAGT+GGG - chr2_1:8044512-8044531 None:intergenic 35.0%
AACATACCAATCATAGACAG+TGG - chr2_1:8044513-8044532 None:intergenic 35.0%
! ATTCCATCTTGGTAATAGCT+TGG + chr2_1:8045248-8045267 Msa0192290:three_prime_UTR 35.0%
AATCCAAGCTATTACCAAGA+TGG - chr2_1:8045254-8045273 None:intergenic 35.0%
TTAGCTTCCTAAGCTTCTCA+AGG - chr2_1:8044134-8044153 None:intergenic 40.0%
!! TATACCTTTGATGATGCTGG+TGG - chr2_1:8044157-8044176 None:intergenic 40.0%
CACGTAAAGTTGACAACGTT+TGG + chr2_1:8044405-8044424 Msa0192290:CDS 40.0%
GTAAAGTTGACAACGTTTGG+AGG + chr2_1:8044408-8044427 Msa0192290:CDS 40.0%
ATACCAATCATAGACAGTGG+GGG - chr2_1:8044510-8044529 None:intergenic 40.0%
CATACCAATCATAGACAGTG+GGG - chr2_1:8044511-8044530 None:intergenic 40.0%
ATGTGCCACCAAAACTTTCT+GGG + chr2_1:8044897-8044916 Msa0192290:exon 40.0%
!! ATCAACCCAGAAAGTTTTGG+TGG - chr2_1:8044905-8044924 None:intergenic 40.0%
! GCAATCAACCCAGAAAGTTT+TGG - chr2_1:8044908-8044927 None:intergenic 40.0%
ATTACGTGTCGTGATCTGAT+CGG + chr2_1:8044979-8044998 Msa0192290:three_prime_UTR 40.0%
GATGGAATTGCACAGTTACA+TGG - chr2_1:8045236-8045255 None:intergenic 40.0%
GTAACTGTGCAATTCCATCT+TGG + chr2_1:8045237-8045256 Msa0192290:three_prime_UTR 40.0%
TTAGCTTCCTAAGCTTCTCA+AGG - chr2_1:8044134-8044153 None:intergenic 40.0%
!! TATACCTTTGATGATGCTGG+TGG - chr2_1:8044157-8044176 None:intergenic 40.0%
CACGTAAAGTTGACAACGTT+TGG + chr2_1:8044405-8044424 Msa0192290:CDS 40.0%
GTAAAGTTGACAACGTTTGG+AGG + chr2_1:8044408-8044427 Msa0192290:CDS 40.0%
ATACCAATCATAGACAGTGG+GGG - chr2_1:8044510-8044529 None:intergenic 40.0%
CATACCAATCATAGACAGTG+GGG - chr2_1:8044511-8044530 None:intergenic 40.0%
ATGTGCCACCAAAACTTTCT+GGG + chr2_1:8044897-8044916 Msa0192290:exon 40.0%
!! ATCAACCCAGAAAGTTTTGG+TGG - chr2_1:8044905-8044924 None:intergenic 40.0%
! GCAATCAACCCAGAAAGTTT+TGG - chr2_1:8044908-8044927 None:intergenic 40.0%
ATTACGTGTCGTGATCTGAT+CGG + chr2_1:8044979-8044998 Msa0192290:three_prime_UTR 40.0%
GATGGAATTGCACAGTTACA+TGG - chr2_1:8045236-8045255 None:intergenic 40.0%
GTAACTGTGCAATTCCATCT+TGG + chr2_1:8045237-8045256 Msa0192290:three_prime_UTR 40.0%
CTAACCACCAGCATCATCAA+AGG + chr2_1:8044150-8044169 Msa0192290:CDS 45.0%
!! TCAACTTTACGTGCCGATTG+AGG - chr2_1:8044398-8044417 None:intergenic 45.0%
TTAGTAGCAGAGTTACTCCC+AGG - chr2_1:8044446-8044465 None:intergenic 45.0%
! ATTGGGTTGTATGTGATCGC+AGG + chr2_1:8044839-8044858 Msa0192290:intron 45.0%
!! AAGTTTTGGTGGCACATCAG+CGG - chr2_1:8044894-8044913 None:intergenic 45.0%
GATGTGCCACCAAAACTTTC+TGG + chr2_1:8044896-8044915 Msa0192290:exon 45.0%
TGGCAGACGATCAACAAAAC+AGG - chr2_1:8044944-8044963 None:intergenic 45.0%
GTAATGGTGATACAGACACG+TGG - chr2_1:8044964-8044983 None:intergenic 45.0%
GATCAGATCACGACACGTAA+TGG - chr2_1:8044980-8044999 None:intergenic 45.0%
TTACGTGTCGTGATCTGATC+GGG + chr2_1:8044980-8044999 Msa0192290:three_prime_UTR 45.0%
CTAACCACCAGCATCATCAA+AGG + chr2_1:8044150-8044169 Msa0192290:CDS 45.0%
!! TCAACTTTACGTGCCGATTG+AGG - chr2_1:8044398-8044417 None:intergenic 45.0%
TTAGTAGCAGAGTTACTCCC+AGG - chr2_1:8044446-8044465 None:intergenic 45.0%
! ATTGGGTTGTATGTGATCGC+AGG + chr2_1:8044839-8044858 Msa0192290:intron 45.0%
!! AAGTTTTGGTGGCACATCAG+CGG - chr2_1:8044894-8044913 None:intergenic 45.0%
GATGTGCCACCAAAACTTTC+TGG + chr2_1:8044896-8044915 Msa0192290:exon 45.0%
TGGCAGACGATCAACAAAAC+AGG - chr2_1:8044944-8044963 None:intergenic 45.0%
GTAATGGTGATACAGACACG+TGG - chr2_1:8044964-8044983 None:intergenic 45.0%
GATCAGATCACGACACGTAA+TGG - chr2_1:8044980-8044999 None:intergenic 45.0%
TTACGTGTCGTGATCTGATC+GGG + chr2_1:8044980-8044999 Msa0192290:three_prime_UTR 45.0%
!! CTTTGGGATGATACCGTTGC+TGG + chr2_1:8044090-8044109 Msa0192290:CDS 50.0%
GACTCCAACGACACCTCAAT+CGG + chr2_1:8044382-8044401 Msa0192290:CDS 50.0%
!! TCATAGACAGTGGGGGTGTT+GGG - chr2_1:8044503-8044522 None:intergenic 50.0%
! ATCATAGACAGTGGGGGTGT+TGG - chr2_1:8044504-8044523 None:intergenic 50.0%
ACACCCCCACTGTCTATGAT+TGG + chr2_1:8044504-8044523 Msa0192290:CDS 50.0%
TGTGATCGCAGGATGTACAG+CGG + chr2_1:8044850-8044869 Msa0192290:intron 50.0%
!! CTTTGGGATGATACCGTTGC+TGG + chr2_1:8044090-8044109 Msa0192290:CDS 50.0%
GACTCCAACGACACCTCAAT+CGG + chr2_1:8044382-8044401 Msa0192290:CDS 50.0%
!! TCATAGACAGTGGGGGTGTT+GGG - chr2_1:8044503-8044522 None:intergenic 50.0%
! ATCATAGACAGTGGGGGTGT+TGG - chr2_1:8044504-8044523 None:intergenic 50.0%
ACACCCCCACTGTCTATGAT+TGG + chr2_1:8044504-8044523 Msa0192290:CDS 50.0%
TGTGATCGCAGGATGTACAG+CGG + chr2_1:8044850-8044869 Msa0192290:intron 50.0%
! AGCGTGGCCTTGAGAAGCTT+AGG + chr2_1:8044124-8044143 Msa0192290:CDS 55.0%
!! GTTGGAGTCACCGGTGTTGT+CGG - chr2_1:8044371-8044390 None:intergenic 55.0%
!! TGAGGTGTCGTTGGAGTCAC+CGG - chr2_1:8044380-8044399 None:intergenic 55.0%
! TGGAGGAGCGTGTTCAATCC+TGG + chr2_1:8044425-8044444 Msa0192290:CDS 55.0%
! GGAGGAGCGTGTTCAATCCT+GGG + chr2_1:8044426-8044445 Msa0192290:CDS 55.0%
!! CATAGACAGTGGGGGTGTTG+GGG - chr2_1:8044502-8044521 None:intergenic 55.0%
GTGATCGCAGGATGTACAGC+GGG + chr2_1:8044851-8044870 Msa0192290:intron 55.0%
TGATCGCAGGATGTACAGCG+GGG + chr2_1:8044852-8044871 Msa0192290:intron 55.0%
! AGCGTGGCCTTGAGAAGCTT+AGG + chr2_1:8044124-8044143 Msa0192290:CDS 55.0%
!! GTTGGAGTCACCGGTGTTGT+CGG - chr2_1:8044371-8044390 None:intergenic 55.0%
!! TGAGGTGTCGTTGGAGTCAC+CGG - chr2_1:8044380-8044399 None:intergenic 55.0%
! TGGAGGAGCGTGTTCAATCC+TGG + chr2_1:8044425-8044444 Msa0192290:CDS 55.0%
! GGAGGAGCGTGTTCAATCCT+GGG + chr2_1:8044426-8044445 Msa0192290:CDS 55.0%
!! CATAGACAGTGGGGGTGTTG+GGG - chr2_1:8044502-8044521 None:intergenic 55.0%
GTGATCGCAGGATGTACAGC+GGG + chr2_1:8044851-8044870 Msa0192290:intron 55.0%
TGATCGCAGGATGTACAGCG+GGG + chr2_1:8044852-8044871 Msa0192290:intron 55.0%
!! CTCAGGTTGAGGGCCAGCAA+CGG - chr2_1:8044106-8044125 None:intergenic 60.0%
!! CAAGGCCACGCTCAGGTTGA+GGG - chr2_1:8044116-8044135 None:intergenic 60.0%
! TCAAGGCCACGCTCAGGTTG+AGG - chr2_1:8044117-8044136 None:intergenic 60.0%
AGCTTCTCAAGGCCACGCTC+AGG - chr2_1:8044123-8044142 None:intergenic 60.0%
GCCTTCGACACCGACAACAC+CGG + chr2_1:8044358-8044377 Msa0192290:CDS 60.0%
!! ACCGGTGTTGTCGGTGTCGA+AGG - chr2_1:8044362-8044381 None:intergenic 60.0%
!! CGTGCCGATTGAGGTGTCGT+TGG - chr2_1:8044389-8044408 None:intergenic 60.0%
GGATGTACAGCGGGGACACA+AGG + chr2_1:8044860-8044879 Msa0192290:intron 60.0%
!! CTCAGGTTGAGGGCCAGCAA+CGG - chr2_1:8044106-8044125 None:intergenic 60.0%
!! CAAGGCCACGCTCAGGTTGA+GGG - chr2_1:8044116-8044135 None:intergenic 60.0%
! TCAAGGCCACGCTCAGGTTG+AGG - chr2_1:8044117-8044136 None:intergenic 60.0%
AGCTTCTCAAGGCCACGCTC+AGG - chr2_1:8044123-8044142 None:intergenic 60.0%
GCCTTCGACACCGACAACAC+CGG + chr2_1:8044358-8044377 Msa0192290:CDS 60.0%
!! ACCGGTGTTGTCGGTGTCGA+AGG - chr2_1:8044362-8044381 None:intergenic 60.0%
!! CGTGCCGATTGAGGTGTCGT+TGG - chr2_1:8044389-8044408 None:intergenic 60.0%
GGATGTACAGCGGGGACACA+AGG + chr2_1:8044860-8044879 Msa0192290:intron 60.0%
!! ACAGTGGGGGTGTTGGGGAG+TGG - chr2_1:8044497-8044516 None:intergenic 65.0%
!! ACAGTGGGGGTGTTGGGGAG+TGG - chr2_1:8044497-8044516 None:intergenic 65.0%
GCTGGCCCTCAACCTGAGCG+TGG + chr2_1:8044108-8044127 Msa0192290:CDS 70.0%
GCTGGCCCTCAACCTGAGCG+TGG + chr2_1:8044108-8044127 Msa0192290:CDS 70.0%
Chromosome Type Strat End Strand Name
chr2_1 gene 8044018 8045300 8044018 ID=Msa0192290;Name=Msa0192290
chr2_1 mRNA 8044018 8045300 8044018 ID=Msa0192290-mRNA-1;Parent=Msa0192290;Name=Msa0192290-mRNA-1;_AED=0.02;_eAED=0.02;_QI=60|1|1|1|1|1|3|403|114
chr2_1 exon 8044018 8044171 8044018 ID=Msa0192290-mRNA-1:exon:3690;Parent=Msa0192290-mRNA-1
chr2_1 exon 8044312 8044525 8044312 ID=Msa0192290-mRNA-1:exon:3691;Parent=Msa0192290-mRNA-1
chr2_1 exon 8044861 8045300 8044861 ID=Msa0192290-mRNA-1:exon:3692;Parent=Msa0192290-mRNA-1
chr2_1 five_prime_UTR 8044018 8044077 8044018 ID=Msa0192290-mRNA-1:five_prime_utr;Parent=Msa0192290-mRNA-1
chr2_1 CDS 8044078 8044171 8044078 ID=Msa0192290-mRNA-1:cds;Parent=Msa0192290-mRNA-1
chr2_1 CDS 8044312 8044525 8044312 ID=Msa0192290-mRNA-1:cds;Parent=Msa0192290-mRNA-1
chr2_1 CDS 8044861 8044897 8044861 ID=Msa0192290-mRNA-1:cds;Parent=Msa0192290-mRNA-1
chr2_1 three_prime_UTR 8044898 8045300 8044898 ID=Msa0192290-mRNA-1:three_prime_utr;Parent=Msa0192290-mRNA-1
Gene Sequence

>Msa0192290

ATGTTAGACAAACTTTGGGATGATACCGTTGCTGGCCCTCAACCTGAGCGTGGCCTTGAGAAGCTTAGGAAGCTAACCACCAGCATCATCAAAGGTGTAGATGAAGGAGGAAGTGCTCAGTTAATGAGAAACACGTCGTTGCCTTCGACACCGACAACACCGGTGACTCCAACGACACCTCAATCGGCACGTAAAGTTGACAACGTTTGGAGGAGCGTGTTCAATCCTGGGAGTAACTCTGCTACTAAGACAATTGGTGCTCATATGTTTGACAAACCACTCCCCAACACCCCCACTGTCTATGATTGGATGTACAGCGGGGACACAAGGAGCAAGCACCGCTGA
Protein sequence

>Msa0192290

MLDKLWDDTVAGPQPERGLEKLRKLTTSIIKGVDEGGSAQLMRNTSLPSTPTTPVTPTTPQSARKVDNVWRSVFNPGSNSATKTIGAHMFDKPLPNTPTVYDWMYSGDTRSKHR*