Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623130 | XP_003598486.2 | 90.299 | 268 | 5 | 5 | 1 | 260 | 1 | 255 | 2.00e-156 | 448 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623130 | sp|Q9LJG8|ASIL2_ARATH | 35.772 | 123 | 67 | 2 | 31 | 141 | 61 | 183 | 2.64e-15 | 78.6 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623130 | A0A396IK94 | 90.299 | 268 | 5 | 5 | 1 | 260 | 1 | 255 | 9.58e-157 | 448 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0623130 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0623130 | Msa1008490 | 0.804999 | 1.649510e-49 | -8.615850e-47 |
| Msa0623130 | Msa1271280 | 0.806003 | 1.015621e-49 | -8.615850e-47 |
| Msa0623130 | Msa1278840 | 0.807638 | 4.582934e-50 | -8.615850e-47 |
| Msa0623130 | Msa1431430 | 0.801945 | 7.087083e-49 | -8.615850e-47 |
| Msa0349080 | Msa0623130 | 0.811087 | 8.343309e-51 | -8.615850e-47 |
| Msa0491040 | Msa0623130 | 0.809132 | 2.200606e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623130 | MtrunA17_Chr3g0082261 | 90.299 | 268 | 5 | 5 | 1 | 260 | 1 | 255 | 1.84e-160 | 448 |
| Msa0623130 | MtrunA17_Chr1g0164461 | 86.432 | 199 | 6 | 5 | 1 | 191 | 1 | 186 | 8.91e-106 | 305 |
| Msa0623130 | MtrunA17_Chr2g0283871 | 39.796 | 98 | 52 | 3 | 41 | 131 | 18 | 115 | 5.48e-16 | 76.6 |
| Msa0623130 | MtrunA17_Chr1g0179531 | 40.816 | 98 | 49 | 3 | 40 | 131 | 127 | 221 | 1.42e-15 | 76.3 |
| Msa0623130 | MtrunA17_Chr8g0344681 | 25.385 | 260 | 134 | 8 | 33 | 262 | 58 | 287 | 2.70e-14 | 72.0 |
| Msa0623130 | MtrunA17_Chr4g0041151 | 34.653 | 101 | 58 | 2 | 42 | 134 | 27 | 127 | 1.71e-13 | 69.3 |
| Msa0623130 | MtrunA17_Chr1g0164431 | 93.548 | 31 | 2 | 0 | 230 | 260 | 1 | 31 | 5.86e-13 | 63.5 |
| Msa0623130 | MtrunA17_Chr5g0402321 | 33.036 | 112 | 66 | 3 | 46 | 148 | 22 | 133 | 5.86e-12 | 63.9 |
| Msa0623130 | MtrunA17_Chr4g0066271 | 32.673 | 101 | 61 | 1 | 40 | 133 | 111 | 211 | 7.36e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0623130 | AT3G54390.1 | 57.658 | 222 | 72 | 5 | 39 | 260 | 31 | 230 | 3.43e-69 | 216 |
| Msa0623130 | AT3G54390.2 | 57.658 | 222 | 72 | 5 | 39 | 260 | 47 | 246 | 4.91e-69 | 216 |
| Msa0623130 | AT3G10030.1 | 40.777 | 103 | 54 | 2 | 34 | 131 | 149 | 249 | 9.04e-18 | 83.2 |
| Msa0623130 | AT3G10030.2 | 40.777 | 103 | 54 | 2 | 34 | 131 | 149 | 249 | 1.12e-17 | 82.8 |
| Msa0623130 | AT3G14180.1 | 35.772 | 123 | 67 | 2 | 31 | 141 | 61 | 183 | 2.69e-16 | 78.6 |
| Msa0623130 | AT3G24860.1 | 40.698 | 86 | 47 | 2 | 46 | 130 | 65 | 147 | 4.73e-14 | 71.2 |
| Msa0623130 | AT5G05550.3 | 42.222 | 90 | 52 | 0 | 42 | 131 | 20 | 109 | 1.03e-13 | 69.7 |
| Msa0623130 | AT5G05550.1 | 42.222 | 90 | 52 | 0 | 42 | 131 | 20 | 109 | 1.06e-13 | 69.7 |
| Msa0623130 | AT5G05550.2 | 42.222 | 90 | 52 | 0 | 42 | 131 | 20 | 109 | 1.28e-13 | 69.3 |
| Msa0623130 | AT3G58630.1 | 31.293 | 147 | 80 | 4 | 42 | 169 | 22 | 166 | 1.66e-13 | 69.7 |
| Msa0623130 | AT3G58630.2 | 31.293 | 147 | 80 | 4 | 42 | 169 | 22 | 166 | 1.90e-13 | 69.7 |
| Msa0623130 | AT3G11100.1 | 43.333 | 90 | 49 | 2 | 42 | 131 | 18 | 105 | 9.20e-13 | 67.0 |
| Msa0623130 | AT2G44730.1 | 33.673 | 98 | 58 | 1 | 40 | 130 | 58 | 155 | 1.20e-11 | 64.7 |
Find 46 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAAACAACAATATTATTAT+TGG | 0.197844 | 4_3:+316787 | Msa0623130:CDS |
| TTACACTGTGTTTGTGTCTT+TGG | 0.214518 | 4_3:-316985 | None:intergenic |
| TTGAAGCATATGAATCAAAA+TGG | 0.232049 | 4_3:+316875 | Msa0623130:CDS |
| ATGGATTCTTGTTAGCTATA+TGG | 0.326116 | 4_3:-318702 | None:intergenic |
| ACCTATTTCTTTACACTAAG+AGG | 0.330327 | 4_3:-320415 | None:intergenic |
| GTTGATGGAGGATATTATTA+TGG | 0.339489 | 4_3:+316680 | Msa0623130:five_prime_UTR |
| ATTATTATTGGTAGTGGAAG+TGG | 0.394946 | 4_3:+316799 | Msa0623130:CDS |
| AACAATATTATTATTGGTAG+TGG | 0.397415 | 4_3:+316793 | Msa0623130:CDS |
| ACTAAACAATAATCAAGGTT+TGG | 0.408425 | 4_3:+317134 | Msa0623130:CDS |
| AAGCGCCGGCGTGCTGCTAT+CGG | 0.427506 | 4_3:-318731 | None:intergenic |
| CAAAACTCAAAGGACAAGAT+TGG | 0.436569 | 4_3:+316914 | Msa0623130:CDS |
| GGTGATTCTTGTTGTGATGT+TGG | 0.438336 | 4_3:-316757 | None:intergenic |
| CAAAACTCACATGGATCAAA+TGG | 0.444369 | 4_3:+317237 | Msa0623130:CDS |
| CTAGTTCAGATGTTTCATCT+TGG | 0.449491 | 4_3:+317052 | Msa0623130:CDS |
| GGTGGAGGAACAACCGTACT+AGG | 0.467128 | 4_3:-317201 | None:intergenic |
| GGCTAGCAGAGGTGGTAGTA+AGG | 0.468988 | 4_3:+318863 | Msa0623130:CDS |
| GATCTTCTTCTACGTGGGAC+AGG | 0.489537 | 4_3:+317093 | Msa0623130:CDS |
| AAAACTCAAAGGACAAGATT+GGG | 0.491011 | 4_3:+316915 | Msa0623130:CDS |
| TGGGAATAGCAGAAAGCATA+AGG | 0.497144 | 4_3:+318839 | Msa0623130:CDS |
| TGAAGCATATGAATCAAAAT+GGG | 0.499206 | 4_3:+316876 | Msa0623130:CDS |
| ATTCTTGTTGTGATGTTGGA+GGG | 0.502379 | 4_3:-316753 | None:intergenic |
| ATCCAGATTAGGTTTATCGT+TGG | 0.504767 | 4_3:+320365 | Msa0623130:intron |
| CATGAGGCTAAGAATATGAA+AGG | 0.514172 | 4_3:-316592 | None:intergenic |
| GAGGCAAAAGAAAGAAACAA+TGG | 0.514233 | 4_3:+318819 | Msa0623130:CDS |
| TGAGCAGTTGTAATTGGTGG+AGG | 0.515009 | 4_3:-317216 | None:intergenic |
| AGATTGAGTCCATGAAGAAA+AGG | 0.517431 | 4_3:+317013 | Msa0623130:CDS |
| AGGCAAAAGAAAGAAACAAT+GGG | 0.536131 | 4_3:+318820 | Msa0623130:CDS |
| TATAGCTAACAAGAATCCAT+TGG | 0.536715 | 4_3:+318705 | Msa0623130:CDS |
| GACTTGATCTTCTTCTACGT+GGG | 0.537726 | 4_3:+317088 | Msa0623130:CDS |
| GATTCTTGTTGTGATGTTGG+AGG | 0.544639 | 4_3:-316754 | None:intergenic |
| CATAAGGTGGCTAGCAGAGG+TGG | 0.548999 | 4_3:+318855 | Msa0623130:CDS |
| CAGAGAACAATAACAACAAG+AGG | 0.552289 | 4_3:+318800 | Msa0623130:CDS |
| ACAACACTAAACAATAATCA+AGG | 0.555763 | 4_3:+317129 | Msa0623130:CDS |
| AAGCATAAGGTGGCTAGCAG+AGG | 0.587151 | 4_3:+318852 | Msa0623130:CDS |
| GTGCTGCTATCGGTTTCCAA+TGG | 0.590073 | 4_3:-318721 | None:intergenic |
| AAAAGAGATGAATGGAGTGA+AGG | 0.593095 | 4_3:+316835 | Msa0623130:CDS |
| ATGAGGCTAAGAATATGAAA+GGG | 0.599291 | 4_3:-316591 | None:intergenic |
| AGAAATAGAGCAAAACTCAA+AGG | 0.604235 | 4_3:+316904 | Msa0623130:CDS |
| ACAACTGCTCAAAACTCACA+TGG | 0.614879 | 4_3:+317228 | Msa0623130:CDS |
| AGACTTGATCTTCTTCTACG+TGG | 0.623699 | 4_3:+317087 | Msa0623130:CDS |
| TGGTGTTGATAAATTAGTCA+AGG | 0.628166 | 4_3:+317257 | Msa0623130:CDS |
| TCAGCCACTAGCTCCTAGTA+CGG | 0.644324 | 4_3:+317188 | Msa0623130:CDS |
| GGAAACCGATAGCAGCACGC+CGG | 0.658154 | 4_3:+318726 | Msa0623130:CDS |
| ACAACCGTACTAGGAGCTAG+TGG | 0.669765 | 4_3:-317192 | None:intergenic |
| AGATCAAGTCTAGAATACAA+AGG | 0.687202 | 4_3:-317075 | None:intergenic |
| GAATAGCAGAAAGCATAAGG+TGG | 0.715377 | 4_3:+318842 | Msa0623130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTATTTTATTTTT+AGG | + | chr4_3:317423-317442 | Msa0623130:intron | 0.0% |
| !! | AAAAAAATAAAATAAAAAAT+TGG | - | chr4_3:317665-317684 | None:intergenic | 0.0% |
| !!! | TTTAAATATTGATAGTATAA+AGG | + | chr4_3:318420-318439 | Msa0623130:intron | 10.0% |
| !! | TAAAGAAAAAAATAATACTT+TGG | - | chr4_3:319415-319434 | None:intergenic | 10.0% |
| !! | CAAAACAACAATATTATTAT+TGG | + | chr4_3:316787-316806 | Msa0623130:CDS | 15.0% |
| !!! | AGACTTTAAAAAAGAAAATT+TGG | + | chr4_3:317464-317483 | Msa0623130:intron | 15.0% |
| !! | TTGTTAAATATTAAAGTCAA+AGG | + | chr4_3:317633-317652 | Msa0623130:intron | 15.0% |
| !!! | ATTTAATTTAAAGAGTTTGA+TGG | + | chr4_3:317876-317895 | Msa0623130:intron | 15.0% |
| !! | TTAATGCATATATAGAATAA+TGG | - | chr4_3:318107-318126 | None:intergenic | 15.0% |
| !! | TAGTATATGGTTAAAATAAA+TGG | - | chr4_3:318155-318174 | None:intergenic | 15.0% |
| !! | GATAGTGAAATATATATAAT+TGG | - | chr4_3:318565-318584 | None:intergenic | 15.0% |
| !! | GTAACATAATATTAATTGAA+GGG | - | chr4_3:319385-319404 | None:intergenic | 15.0% |
| !! | TGTAACATAATATTAATTGA+AGG | - | chr4_3:319386-319405 | None:intergenic | 15.0% |
| !! | AGTATTAAAAGAAAATTCTT+CGG | + | chr4_3:319558-319577 | Msa0623130:intron | 15.0% |
| !!! | TATTTATTTTGCTTATGTTT+TGG | + | chr4_3:319613-319632 | Msa0623130:intron | 15.0% |
| !!! | ATTCTTTAAAAGAAAAACTT+TGG | - | chr4_3:320196-320215 | None:intergenic | 15.0% |
| !! | GTTAAAAAGTTTATAGTTGA+TGG | + | chr4_3:316665-316684 | Msa0623130:five_prime_UTR | 20.0% |
| !!! | ATATTGTTGTTTTGTTTTCT+TGG | - | chr4_3:316781-316800 | None:intergenic | 20.0% |
| !! | AACAATATTATTATTGGTAG+TGG | + | chr4_3:316793-316812 | Msa0623130:CDS | 20.0% |
| !!! | AAGCAATTTTATAATTTGGA+AGG | - | chr4_3:317383-317402 | None:intergenic | 20.0% |
| !!! | GAACAAGCAATTTTATAATT+TGG | - | chr4_3:317387-317406 | None:intergenic | 20.0% |
| !! | ATTATAAAATTGCTTGTTCA+AGG | + | chr4_3:317388-317407 | Msa0623130:intron | 20.0% |
| !!! | TATTTTTAGGACTAAAAAGT+AGG | + | chr4_3:317436-317455 | Msa0623130:intron | 20.0% |
| !! | AAAATTGACGACTAAAAATA+AGG | + | chr4_3:317557-317576 | Msa0623130:intron | 20.0% |
| !! | TCAAAAAAAACAATGATCTT+AGG | - | chr4_3:317791-317810 | None:intergenic | 20.0% |
| !!! | AAGATCATTGTTTTTTTTGA+AGG | + | chr4_3:317791-317810 | Msa0623130:intron | 20.0% |
| !!! | AGATCATTGTTTTTTTTGAA+GGG | + | chr4_3:317792-317811 | Msa0623130:intron | 20.0% |
| !! | ATAATAAGCAAATTGTTAAG+TGG | + | chr4_3:318067-318086 | Msa0623130:intron | 20.0% |
| !! | TAATAAGCAAATTGTTAAGT+GGG | + | chr4_3:318068-318087 | Msa0623130:intron | 20.0% |
| !!! | ACTATCAATATTTAAAGTCT+TGG | - | chr4_3:318416-318435 | None:intergenic | 20.0% |
| !! | ATAGTAAACTCAAATATCTT+TGG | - | chr4_3:318512-318531 | None:intergenic | 20.0% |
| !! | ATTTATGATTTCATATTGAC+AGG | + | chr4_3:318651-318670 | Msa0623130:intron | 20.0% |
| !!! | NNNNNNNNTGATGATGTTTG+TGG | + | chr4_3:319059-319078 | Msa0623130:intron | 20.0% |
| !!! | AATGAGGAAAGTTTTTTTTT+TGG | + | chr4_3:319137-319156 | Msa0623130:intron | 20.0% |
| !!! | AAAGTTTTTTTTTTGGTGTA+AGG | + | chr4_3:319144-319163 | Msa0623130:intron | 20.0% |
| !!! | AAGTTTTTTTTTTGGTGTAA+GGG | + | chr4_3:319145-319164 | Msa0623130:intron | 20.0% |
| !!! | TTATTCATAAACTTTTCTCA+TGG | - | chr4_3:319211-319230 | None:intergenic | 20.0% |
| !! | AGAAAAAGTTATTATTGCAT+TGG | - | chr4_3:319351-319370 | None:intergenic | 20.0% |
| !! | AAATTATCCTAATCAACTAT+TGG | - | chr4_3:319450-319469 | None:intergenic | 20.0% |
| !! | AATAGTTGATTAGGATAATT+TGG | + | chr4_3:319449-319468 | Msa0623130:intron | 20.0% |
| !! | AATATCATATAAGATGTTGT+TGG | + | chr4_3:319753-319772 | Msa0623130:intron | 20.0% |
| !! | GATAAAAAAAAAATATGCAC+TGG | + | chr4_3:319849-319868 | Msa0623130:intron | 20.0% |
| !!! | AAAAAGTTTATAGTTGATGG+AGG | + | chr4_3:316668-316687 | Msa0623130:five_prime_UTR | 25.0% |
| ! | TTGAAGCATATGAATCAAAA+TGG | + | chr4_3:316875-316894 | Msa0623130:CDS | 25.0% |
| ! | TGAAGCATATGAATCAAAAT+GGG | + | chr4_3:316876-316895 | Msa0623130:CDS | 25.0% |
| ! | ACAACACTAAACAATAATCA+AGG | + | chr4_3:317129-317148 | Msa0623130:CDS | 25.0% |
| ! | ACTAAACAATAATCAAGGTT+TGG | + | chr4_3:317134-317153 | Msa0623130:CDS | 25.0% |
| ! | TATAATCTAAAGAAAATGCG+AGG | + | chr4_3:317845-317864 | Msa0623130:intron | 25.0% |
| ! | TTCACATGCATAATAGTATA+TGG | - | chr4_3:318168-318187 | None:intergenic | 25.0% |
| ! | ATGCATAATATATGCAAGAT+AGG | + | chr4_3:318270-318289 | Msa0623130:intron | 25.0% |
| ! | TGCATAATATATGCAAGATA+GGG | + | chr4_3:318271-318290 | Msa0623130:intron | 25.0% |
| ! | TTTGGAAGATATTAAAGTCT+TGG | - | chr4_3:318494-318513 | None:intergenic | 25.0% |
| !! | AACTCTCATATTTTCTTTCT+TGG | + | chr4_3:319083-319102 | Msa0623130:intron | 25.0% |
| ! | TTTGCCTTTAAATTTCAATG+AGG | + | chr4_3:319121-319140 | Msa0623130:intron | 25.0% |
| ! | CTTTCCTCATTGAAATTTAA+AGG | - | chr4_3:319128-319147 | None:intergenic | 25.0% |
| ! | AAACAAACCAATAGTTGATT+AGG | + | chr4_3:319440-319459 | Msa0623130:intron | 25.0% |
| ! | TCAACTAAGTCATCTAATAT+GGG | - | chr4_3:319669-319688 | None:intergenic | 25.0% |
| ! | ATCAACTAAGTCATCTAATA+TGG | - | chr4_3:319670-319689 | None:intergenic | 25.0% |
| ! | AAAATTTATCAAAGTGTGTC+AGG | - | chr4_3:319708-319727 | None:intergenic | 25.0% |
| !! | AAGAATCCTTTTCAATATCA+TGG | - | chr4_3:320164-320183 | None:intergenic | 25.0% |
| !!! | TTTGATTTTGCTTGGTAAAT+AGG | - | chr4_3:320246-320265 | None:intergenic | 25.0% |
| !! | TTATAGAAGTACAAGCATAA+AGG | - | chr4_3:320346-320365 | None:intergenic | 25.0% |
| ATGAGGCTAAGAATATGAAA+GGG | - | chr4_3:316594-316613 | None:intergenic | 30.0% | |
| ! | GTTGATGGAGGATATTATTA+TGG | + | chr4_3:316680-316699 | Msa0623130:five_prime_UTR | 30.0% |
| !! | ATTATTATTGGTAGTGGAAG+TGG | + | chr4_3:316799-316818 | Msa0623130:CDS | 30.0% |
| AGAGACTAAAAAGAGATGAA+TGG | + | chr4_3:316827-316846 | Msa0623130:CDS | 30.0% | |
| AGAAATAGAGCAAAACTCAA+AGG | + | chr4_3:316904-316923 | Msa0623130:CDS | 30.0% | |
| AAAACTCAAAGGACAAGATT+GGG | + | chr4_3:316915-316934 | Msa0623130:CDS | 30.0% | |
| ! | TGATCTATACCTTTTCTTCA+TGG | - | chr4_3:317025-317044 | None:intergenic | 30.0% |
| ! | AGATCAAGTCTAGAATACAA+AGG | - | chr4_3:317078-317097 | None:intergenic | 30.0% |
| !!! | TAATCAAGGTTTGGTTTTGT+TGG | + | chr4_3:317143-317162 | Msa0623130:CDS | 30.0% |
| !! | TGGTGTTGATAAATTAGTCA+AGG | + | chr4_3:317257-317276 | Msa0623130:CDS | 30.0% |
| !! | AGTTTCTTATTGCTTTTCCT+TGG | + | chr4_3:317979-317998 | Msa0623130:intron | 30.0% |
| GCATAATATATGCAAGATAG+GGG | + | chr4_3:318272-318291 | Msa0623130:intron | 30.0% | |
| ATAGGGGAAAATACATATGT+TGG | + | chr4_3:318288-318307 | Msa0623130:intron | 30.0% | |
| TGTACATTAGTGCTTTACTT+AGG | + | chr4_3:318313-318332 | Msa0623130:intron | 30.0% | |
| ATAGAATGCTGCTGAATAAT+TGG | + | chr4_3:318346-318365 | Msa0623130:intron | 30.0% | |
| ! | TGATAGTATAAAGGTGCAAA+AGG | + | chr4_3:318429-318448 | Msa0623130:intron | 30.0% |
| GGTTTATATGACTTTACCAT+GGG | - | chr4_3:318458-318477 | None:intergenic | 30.0% | |
| AGGTTTATATGACTTTACCA+TGG | - | chr4_3:318459-318478 | None:intergenic | 30.0% | |
| ! | TATTAAAGTCTTGGTCTTCA+TGG | - | chr4_3:318485-318504 | None:intergenic | 30.0% |
| ATGGATTCTTGTTAGCTATA+TGG | - | chr4_3:318705-318724 | None:intergenic | 30.0% | |
| TATAGCTAACAAGAATCCAT+TGG | + | chr4_3:318705-318724 | Msa0623130:CDS | 30.0% | |
| AGGCAAAAGAAAGAAACAAT+GGG | + | chr4_3:318820-318839 | Msa0623130:CDS | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr4_3:319184-319203 | None:intergenic | 30.0% | |
| ! | CATAAACTTTTCTCATGGTA+TGG | - | chr4_3:319206-319225 | None:intergenic | 30.0% |
| ATTGCACACATATTAAGGAA+TGG | - | chr4_3:319505-319524 | None:intergenic | 30.0% | |
| AGTCAATTGCACACATATTA+AGG | - | chr4_3:319510-319529 | None:intergenic | 30.0% | |
| TAACCTCCATGATATTGAAA+AGG | + | chr4_3:320155-320174 | Msa0623130:intron | 30.0% | |
| ! | AATCCTTTTCAATATCATGG+AGG | - | chr4_3:320161-320180 | None:intergenic | 30.0% |
| TTTATTGTATGCCAAACAAG+AGG | + | chr4_3:320217-320236 | Msa0623130:intron | 30.0% | |
| TTATTGTATGCCAAACAAGA+GGG | + | chr4_3:320218-320237 | Msa0623130:intron | 30.0% | |
| !! | GACATGTATTTGATTTTGCT+TGG | - | chr4_3:320254-320273 | None:intergenic | 30.0% |
| GTACTTCTATAATCCAGATT+AGG | + | chr4_3:320354-320373 | Msa0623130:intron | 30.0% | |
| CATGAGGCTAAGAATATGAA+AGG | - | chr4_3:316595-316614 | None:intergenic | 35.0% | |
| !! | AAAGTTTTGTAGCTCACATG+AGG | - | chr4_3:316611-316630 | None:intergenic | 35.0% |
| ! | ATTCTTGTTGTGATGTTGGA+GGG | - | chr4_3:316756-316775 | None:intergenic | 35.0% |
| AAAAGAGATGAATGGAGTGA+AGG | + | chr4_3:316835-316854 | Msa0623130:CDS | 35.0% | |
| CAAAACTCAAAGGACAAGAT+TGG | + | chr4_3:316914-316933 | Msa0623130:CDS | 35.0% | |
| TTACACTGTGTTTGTGTCTT+TGG | - | chr4_3:316988-317007 | None:intergenic | 35.0% | |
| AGATTGAGTCCATGAAGAAA+AGG | + | chr4_3:317013-317032 | Msa0623130:CDS | 35.0% | |
| CTAGTTCAGATGTTTCATCT+TGG | + | chr4_3:317052-317071 | Msa0623130:CDS | 35.0% | |
| ! | TTTTGAGCAGTTGTAATTGG+TGG | - | chr4_3:317222-317241 | None:intergenic | 35.0% |
| !!! | GAGTTTTGAGCAGTTGTAAT+TGG | - | chr4_3:317225-317244 | None:intergenic | 35.0% |
| CAAAACTCACATGGATCAAA+TGG | + | chr4_3:317237-317256 | Msa0623130:CDS | 35.0% | |
| GCAATAAGAAACTCATTCGA+AGG | - | chr4_3:317972-317991 | None:intergenic | 35.0% | |
| AGACAAGCAAGACAATAACT+TGG | + | chr4_3:318006-318025 | Msa0623130:intron | 35.0% | |
| CAGAGAACAATAACAACAAG+AGG | + | chr4_3:318800-318819 | Msa0623130:CDS | 35.0% | |
| GAGGCAAAAGAAAGAAACAA+TGG | + | chr4_3:318819-318838 | Msa0623130:CDS | 35.0% | |
| AAGGTCAGAACAAACAAGAA+TGG | + | chr4_3:318882-318901 | Msa0623130:intron | 35.0% | |
| TGCATAATATATGCAAGGTC+CGG | - | chr4_3:319179-319198 | None:intergenic | 35.0% | |
| !! | AAGCGACACTCATTTTGAAA+CGG | + | chr4_3:319531-319550 | Msa0623130:intron | 35.0% |
| CTAAGTCATCTAATATGGGA+CGG | - | chr4_3:319665-319684 | None:intergenic | 35.0% | |
| ! | AAAATATGCACTGGTATGTG+TGG | + | chr4_3:319858-319877 | Msa0623130:intron | 35.0% |
| !! | TGAACTGTGTCACTTAACAT+GGG | + | chr4_3:319886-319905 | Msa0623130:intron | 35.0% |
| ! | ACTTTTCTCCTTAATTGGCT+CGG | - | chr4_3:319942-319961 | None:intergenic | 35.0% |
| !!! | TTGCCACTTTTCTCCTTAAT+TGG | - | chr4_3:319947-319966 | None:intergenic | 35.0% |
| TATTGTGATTTAGCACTTGG+AGG | - | chr4_3:320137-320156 | None:intergenic | 35.0% | |
| GGTTATTGTGATTTAGCACT+TGG | - | chr4_3:320140-320159 | None:intergenic | 35.0% | |
| TAAATAGGTTCCCTCTTGTT+TGG | - | chr4_3:320231-320250 | None:intergenic | 35.0% | |
| ATCCAGATTAGGTTTATCGT+TGG | + | chr4_3:320365-320384 | Msa0623130:intron | 35.0% | |
| ATCCAACGATAAACCTAATC+TGG | - | chr4_3:320370-320389 | None:intergenic | 35.0% | |
| ! | GATTCTTGTTGTGATGTTGG+AGG | - | chr4_3:316757-316776 | None:intergenic | 40.0% |
| ! | GGTGATTCTTGTTGTGATGT+TGG | - | chr4_3:316760-316779 | None:intergenic | 40.0% |
| AGACTTGATCTTCTTCTACG+TGG | + | chr4_3:317087-317106 | Msa0623130:CDS | 40.0% | |
| GACTTGATCTTCTTCTACGT+GGG | + | chr4_3:317088-317107 | Msa0623130:CDS | 40.0% | |
| ACAACTGCTCAAAACTCACA+TGG | + | chr4_3:317228-317247 | Msa0623130:CDS | 40.0% | |
| GTCTTGCTTGTCTATAACCA+AGG | - | chr4_3:317999-318018 | None:intergenic | 40.0% | |
| CAAGCAAGACAATAACTTGG+AGG | + | chr4_3:318009-318028 | Msa0623130:intron | 40.0% | |
| ! | AGTCTTGGTCTTCATGGTAA+AGG | - | chr4_3:318479-318498 | None:intergenic | 40.0% |
| ! | TGGGAATAGCAGAAAGCATA+AGG | + | chr4_3:318839-318858 | Msa0623130:CDS | 40.0% |
| ! | GAATAGCAGAAAGCATAAGG+TGG | + | chr4_3:318842-318861 | Msa0623130:CDS | 40.0% |
| CATAATATATGCAAGGTCCG+GGG | - | chr4_3:319177-319196 | None:intergenic | 40.0% | |
| GCATAATATATGCAAGGTCC+GGG | - | chr4_3:319178-319197 | None:intergenic | 40.0% | |
| !! | ACGACACTCTTTGAAACAGA+GGG | - | chr4_3:319283-319302 | None:intergenic | 40.0% |
| !! | AACGACACTCTTTGAAACAG+AGG | - | chr4_3:319284-319303 | None:intergenic | 40.0% |
| !!! | GACACTCATTTTGAAACGGA+GGG | + | chr4_3:319535-319554 | Msa0623130:intron | 40.0% |
| ! | CGGTGACAAACATCTTTTTC+AGG | + | chr4_3:319578-319597 | Msa0623130:intron | 40.0% |
| !! | GTGAACTGTGTCACTTAACA+TGG | + | chr4_3:319885-319904 | Msa0623130:intron | 40.0% |
| GAGCCAATTAAGGAGAAAAG+TGG | + | chr4_3:319941-319960 | Msa0623130:intron | 40.0% | |
| TCAGAGAGATTCGAACTTTG+AGG | - | chr4_3:320071-320090 | None:intergenic | 40.0% | |
| CAAAGTTCGAATCTCTCTGA+CGG | + | chr4_3:320071-320090 | Msa0623130:intron | 40.0% | |
| TGAGCAGTTGTAATTGGTGG+AGG | - | chr4_3:317219-317238 | None:intergenic | 45.0% | |
| TCTCACGAGCTTAACTCAGT+TGG | + | chr4_3:318239-318258 | Msa0623130:intron | 45.0% | |
| ! | CGAGCTTAACTCAGTTGGTA+AGG | + | chr4_3:318244-318263 | Msa0623130:intron | 45.0% |
| AAGGTGCAAAAGGTTTCCCA+TGG | + | chr4_3:318439-318458 | Msa0623130:intron | 45.0% | |
| !! | TCTTTTTCGCTGTAAAGCGC+CGG | - | chr4_3:318748-318767 | None:intergenic | 45.0% |
| GAAGATGAGAGTTGAAGCTG+AGG | + | chr4_3:318924-318943 | Msa0623130:intron | 45.0% | |
| TGAGGCAAAGAGAGGAGAAA+TGG | + | chr4_3:318942-318961 | Msa0623130:intron | 45.0% | |
| !!! | CGACACTCATTTTGAAACGG+AGG | + | chr4_3:319534-319553 | Msa0623130:intron | 45.0% |
| AGTCATCTAATATGGGACGG+AGG | - | chr4_3:319662-319681 | None:intergenic | 45.0% | |
| ! | TGTCACTTAACATGGGACGA+AGG | + | chr4_3:319893-319912 | Msa0623130:intron | 45.0% |
| GTCACTTAACATGGGACGAA+GGG | + | chr4_3:319894-319913 | Msa0623130:intron | 45.0% | |
| GACAACTTCCGAGCCAATTA+AGG | + | chr4_3:319931-319950 | Msa0623130:intron | 45.0% | |
| ACTATCACGCCAACCTAAGT+GGG | - | chr4_3:320019-320038 | None:intergenic | 45.0% | |
| ! | GAGAGATTCGAACTTTGAGG+AGG | - | chr4_3:320068-320087 | None:intergenic | 45.0% |
| TGTGATTTAGCACTTGGAGG+AGG | - | chr4_3:320134-320153 | None:intergenic | 45.0% | |
| GATCTTCTTCTACGTGGGAC+AGG | + | chr4_3:317093-317112 | Msa0623130:CDS | 50.0% | |
| TCAGCCACTAGCTCCTAGTA+CGG | + | chr4_3:317188-317207 | Msa0623130:CDS | 50.0% | |
| ACAACCGTACTAGGAGCTAG+TGG | - | chr4_3:317195-317214 | None:intergenic | 50.0% | |
| !! | GTGCTGCTATCGGTTTCCAA+TGG | - | chr4_3:318724-318743 | None:intergenic | 50.0% |
| AAGCATAAGGTGGCTAGCAG+AGG | + | chr4_3:318852-318871 | Msa0623130:CDS | 50.0% | |
| GTTGAAGCTGAGGCAAAGAG+AGG | + | chr4_3:318934-318953 | Msa0623130:intron | 50.0% | |
| !! | AACCTAAGTGGGTTAGGAGG+AGG | - | chr4_3:320008-320027 | None:intergenic | 50.0% |
| TCCTCCTAACCCACTTAGGT+TGG | + | chr4_3:320007-320026 | Msa0623130:intron | 50.0% | |
| CACTATCACGCCAACCTAAG+TGG | - | chr4_3:320020-320039 | None:intergenic | 50.0% | |
| GGTGGAGGAACAACCGTACT+AGG | - | chr4_3:317204-317223 | None:intergenic | 55.0% | |
| CATAAGGTGGCTAGCAGAGG+TGG | + | chr4_3:318855-318874 | Msa0623130:CDS | 55.0% | |
| GGCTAGCAGAGGTGGTAGTA+AGG | + | chr4_3:318863-318882 | Msa0623130:CDS | 55.0% | |
| TGGTGTAAGGGTTCGAACCC+CGG | + | chr4_3:319157-319176 | Msa0623130:intron | 55.0% | |
| TGCCTCCTCCTAACCCACTT+AGG | + | chr4_3:320003-320022 | Msa0623130:intron | 55.0% | |
| !! | GCCAACCTAAGTGGGTTAGG+AGG | - | chr4_3:320011-320030 | None:intergenic | 55.0% |
| ! | CACGCCAACCTAAGTGGGTT+AGG | - | chr4_3:320014-320033 | None:intergenic | 55.0% |
| GGAAACCGATAGCAGCACGC+CGG | + | chr4_3:318726-318745 | Msa0623130:CDS | 60.0% | |
| !! | AAGCGCCGGCGTGCTGCTAT+CGG | - | chr4_3:318734-318753 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 316553 | 320422 | 316553 | ID=Msa0623130;Name=Msa0623130 |
| chr4_3 | mRNA | 316553 | 320422 | 316553 | ID=Msa0623130-mRNA-1;Parent=Msa0623130;Name=Msa0623130-mRNA-1;_AED=0.07;_eAED=0.07;_QI=159|0.5|0.33|0.66|1|1|3|0|276 |
| chr4_3 | exon | 316553 | 317278 | 316553 | ID=Msa0623130-mRNA-1:exon:57;Parent=Msa0623130-mRNA-1 |
| chr4_3 | exon | 318673 | 318884 | 318673 | ID=Msa0623130-mRNA-1:exon:58;Parent=Msa0623130-mRNA-1 |
| chr4_3 | exon | 320371 | 320422 | 320371 | ID=Msa0623130-mRNA-1:exon:59;Parent=Msa0623130-mRNA-1 |
| chr4_3 | five_prime_UTR | 316553 | 316711 | 316553 | ID=Msa0623130-mRNA-1:five_prime_utr;Parent=Msa0623130-mRNA-1 |
| chr4_3 | CDS | 316712 | 317278 | 316712 | ID=Msa0623130-mRNA-1:cds;Parent=Msa0623130-mRNA-1 |
| chr4_3 | CDS | 318673 | 318884 | 318673 | ID=Msa0623130-mRNA-1:cds;Parent=Msa0623130-mRNA-1 |
| chr4_3 | CDS | 320371 | 320422 | 320371 | ID=Msa0623130-mRNA-1:cds;Parent=Msa0623130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
