Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491040 | GAU28263.1 | 86.269 | 335 | 32 | 6 | 6 | 329 | 3 | 334 | 0.0 | 563 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491040 | sp|Q9LJG8|ASIL2_ARATH | 35.772 | 123 | 67 | 2 | 30 | 140 | 61 | 183 | 4.97e-15 | 79.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491040 | A0A2Z6ME36 | 86.269 | 335 | 32 | 6 | 6 | 329 | 3 | 334 | 0.0 | 563 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0491040 | TF | Trihelix |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0491040 | 0.825997 | 3.454238e-54 | -8.615850e-47 |
| Msa0028640 | Msa0491040 | 0.805008 | 1.642252e-49 | -8.615850e-47 |
| Msa0140780 | Msa0491040 | 0.825746 | 3.963017e-54 | -8.615850e-47 |
| Msa0157290 | Msa0491040 | 0.825620 | 4.244203e-54 | -8.615850e-47 |
| Msa0165430 | Msa0491040 | 0.800374 | 1.484980e-48 | -8.615850e-47 |
| Msa0191250 | Msa0491040 | 0.800121 | 1.672004e-48 | -8.615850e-47 |
| Msa0195770 | Msa0491040 | 0.800890 | 1.165364e-48 | -8.615850e-47 |
| Msa0200260 | Msa0491040 | 0.831170 | 1.943004e-55 | -8.615850e-47 |
| Msa0217400 | Msa0491040 | 0.807201 | 5.673361e-50 | -8.615850e-47 |
| Msa0225320 | Msa0491040 | 0.807796 | 4.242733e-50 | -8.615850e-47 |
| Msa0388960 | Msa0491040 | 0.810932 | 9.012242e-51 | -8.615850e-47 |
| Msa0407910 | Msa0491040 | 0.801158 | 1.027541e-48 | -8.615850e-47 |
| Msa0410650 | Msa0491040 | 0.819533 | 1.105062e-52 | -8.615850e-47 |
| Msa0417880 | Msa0491040 | 0.800165 | 1.638036e-48 | -8.615850e-47 |
| Msa0427880 | Msa0491040 | 0.814912 | 1.209756e-51 | -8.615850e-47 |
| Msa0428590 | Msa0491040 | 0.800502 | 1.398762e-48 | -8.615850e-47 |
| Msa0474110 | Msa0491040 | 0.813562 | 2.404398e-51 | -8.615850e-47 |
| Msa0243100 | Msa0491040 | 0.820419 | 6.926686e-53 | -8.615850e-47 |
| Msa0243710 | Msa0491040 | 0.804928 | 1.706679e-49 | -8.615850e-47 |
| Msa0244860 | Msa0491040 | 0.809216 | 2.111864e-50 | -8.615850e-47 |
| Msa0257250 | Msa0491040 | 0.802651 | 5.071116e-49 | -8.615850e-47 |
| Msa0283450 | Msa0491040 | 0.822742 | 2.012860e-53 | -8.615850e-47 |
| Msa0287000 | Msa0491040 | 0.806830 | 6.798340e-50 | -8.615850e-47 |
| Msa0295070 | Msa0491040 | 0.806277 | 8.892751e-50 | -8.615850e-47 |
| Msa0302000 | Msa0491040 | 0.811827 | 5.761792e-51 | -8.615850e-47 |
| Msa0332000 | Msa0491040 | 0.806307 | 8.767343e-50 | -8.615850e-47 |
| Msa0339320 | Msa0491040 | 0.816231 | 6.152434e-52 | -8.615850e-47 |
| Msa0349080 | Msa0491040 | 0.995779 | 8.297057e-220 | -8.615850e-47 |
| Msa0491040 | Msa0507680 | 0.817723 | 2.844463e-52 | -8.615850e-47 |
| Msa0491040 | Msa0509610 | 0.808741 | 2.668708e-50 | -8.615850e-47 |
| Msa0491040 | Msa0514030 | 0.810894 | 9.186498e-51 | -8.615850e-47 |
| Msa0491040 | Msa0514240 | 0.809098 | 2.238208e-50 | -8.615850e-47 |
| Msa0491040 | Msa0518610 | 0.809241 | 2.085719e-50 | -8.615850e-47 |
| Msa0491040 | Msa0566030 | 0.834902 | 2.290731e-56 | -8.615850e-47 |
| Msa0491040 | Msa0574890 | 0.810096 | 1.365895e-50 | -8.615850e-47 |
| Msa0491040 | Msa0623130 | 0.809132 | 2.200606e-50 | -8.615850e-47 |
| Msa0491040 | Msa0647980 | 0.817957 | 2.518312e-52 | -8.615850e-47 |
| Msa0491040 | Msa0657970 | 0.822606 | 2.165378e-53 | -8.615850e-47 |
| Msa0491040 | Msa0754520 | 0.812917 | 3.331299e-51 | -8.615850e-47 |
| Msa0491040 | Msa0757950 | 0.827811 | 1.273178e-54 | -8.615850e-47 |
| Msa0491040 | Msa0769390 | 0.821178 | 4.635520e-53 | -8.615850e-47 |
| Msa0491040 | Msa0789690 | 0.817528 | 3.146759e-52 | -8.615850e-47 |
| Msa0491040 | Msa0801760 | 0.811044 | 8.525128e-51 | -8.615850e-47 |
| Msa0491040 | Msa0810480 | 0.847427 | 1.164769e-59 | -8.615850e-47 |
| Msa0491040 | Msa0832370 | 0.836786 | 7.628589e-57 | -8.615850e-47 |
| Msa0491040 | Msa0833220 | 0.811772 | 5.924063e-51 | -8.615850e-47 |
| Msa0491040 | Msa0844240 | 0.806559 | 7.755701e-50 | -8.615850e-47 |
| Msa0491040 | Msa0867890 | 0.811782 | 5.893297e-51 | -8.615850e-47 |
| Msa0491040 | Msa0870530 | 0.805102 | 1.569897e-49 | -8.615850e-47 |
| Msa0491040 | Msa0880140 | 0.829425 | 5.184216e-55 | -8.615850e-47 |
| Msa0491040 | Msa0909120 | 0.800269 | 1.559888e-48 | -8.615850e-47 |
| Msa0491040 | Msa1008490 | 0.818400 | 1.998971e-52 | -8.615850e-47 |
| Msa0491040 | Msa1069310 | 0.810415 | 1.166138e-50 | -8.615850e-47 |
| Msa0491040 | Msa1082500 | 0.804854 | 1.768684e-49 | -8.615850e-47 |
| Msa0491040 | Msa1083410 | 0.825306 | 5.036592e-54 | -8.615850e-47 |
| Msa0491040 | Msa1085200 | 0.819913 | 9.047034e-53 | -8.615850e-47 |
| Msa0491040 | Msa1098560 | 0.813995 | 1.929904e-51 | -8.615850e-47 |
| Msa0491040 | Msa1144390 | 0.830819 | 2.369105e-55 | -8.615850e-47 |
| Msa0491040 | Msa1215960 | 0.800757 | 1.240480e-48 | -8.615850e-47 |
| Msa0491040 | Msa1228210 | 0.815376 | 9.542568e-52 | -8.615850e-47 |
| Msa0491040 | Msa1249680 | 0.807051 | 6.105634e-50 | -8.615850e-47 |
| Msa0491040 | Msa1269080 | 0.841145 | 5.674898e-58 | -8.615850e-47 |
| Msa0491040 | Msa1270610 | 0.812437 | 4.242262e-51 | -8.615850e-47 |
| Msa0491040 | Msa1271280 | 0.813502 | 2.477980e-51 | -8.615850e-47 |
| Msa0491040 | Msa1271290 | 0.821675 | 3.559583e-53 | -8.615850e-47 |
| Msa0491040 | Msa1271300 | 0.821109 | 4.807240e-53 | -8.615850e-47 |
| Msa0491040 | Msa1278840 | 0.823851 | 1.108764e-53 | -8.615850e-47 |
| Msa0491040 | Msa1283860 | 0.809371 | 1.955712e-50 | -8.615850e-47 |
| Msa0491040 | Msa1295850 | 0.843208 | 1.613912e-58 | -8.615850e-47 |
| Msa0491040 | Msa1308380 | 0.825959 | 3.525992e-54 | -8.615850e-47 |
| Msa0491040 | Msa1313150 | 0.803412 | 3.529351e-49 | -8.615850e-47 |
| Msa0491040 | Msa1318240 | 0.818965 | 1.488017e-52 | -8.615850e-47 |
| Msa0491040 | Msa1329920 | 0.800714 | 1.266275e-48 | -8.615850e-47 |
| Msa0491040 | Msa1365060 | 0.809345 | 1.981127e-50 | -8.615850e-47 |
| Msa0491040 | Msa1409870 | 0.818917 | 1.525961e-52 | -8.615850e-47 |
| Msa0491040 | Msa1410470 | 0.814345 | 1.614923e-51 | -8.615850e-47 |
| Msa0491040 | Msa1423880 | 0.823936 | 1.058666e-53 | -8.615850e-47 |
| Msa0491040 | Msa1431430 | 0.821387 | 4.149259e-53 | -8.615850e-47 |
| Msa0491040 | Msa1438250 | 0.820659 | 6.102481e-53 | -8.615850e-47 |
| Msa0491040 | Msa1443110 | 0.802997 | 4.302291e-49 | -8.615850e-47 |
| Msa0491040 | Msa1447090 | 0.814100 | 1.829260e-51 | -8.615850e-47 |
| Msa0491040 | Msa1460020 | 0.800820 | 1.204302e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491040 | MtrunA17_Chr3g0082261 | 91.071 | 336 | 10 | 7 | 1 | 329 | 1 | 323 | 0.0 | 553 |
| Msa0491040 | MtrunA17_Chr1g0164461 | 89.447 | 199 | 5 | 6 | 1 | 196 | 1 | 186 | 4.28e-110 | 318 |
| Msa0491040 | MtrunA17_Chr1g0164431 | 92.929 | 99 | 3 | 1 | 235 | 329 | 1 | 99 | 8.61e-57 | 179 |
| Msa0491040 | MtrunA17_Chr8g0344681 | 24.922 | 321 | 165 | 11 | 26 | 309 | 52 | 333 | 1.66e-17 | 82.4 |
| Msa0491040 | MtrunA17_Chr2g0283871 | 36.290 | 124 | 71 | 4 | 40 | 156 | 18 | 140 | 1.55e-16 | 79.0 |
| Msa0491040 | MtrunA17_Chr1g0179531 | 40.816 | 98 | 49 | 3 | 39 | 130 | 127 | 221 | 2.22e-15 | 76.6 |
| Msa0491040 | MtrunA17_Chr4g0041151 | 23.077 | 286 | 178 | 7 | 43 | 309 | 29 | 291 | 1.41e-13 | 70.5 |
| Msa0491040 | MtrunA17_Chr5g0402321 | 33.036 | 112 | 66 | 3 | 45 | 147 | 22 | 133 | 5.26e-12 | 64.7 |
| Msa0491040 | MtrunA17_Chr4g0066271 | 32.673 | 101 | 61 | 1 | 39 | 132 | 111 | 211 | 5.51e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0491040 | AT3G54390.1 | 59.386 | 293 | 89 | 6 | 38 | 328 | 31 | 295 | 4.68e-102 | 302 |
| Msa0491040 | AT3G54390.2 | 59.386 | 293 | 89 | 6 | 38 | 328 | 47 | 311 | 6.83e-102 | 302 |
| Msa0491040 | AT3G10030.1 | 42.000 | 100 | 51 | 2 | 33 | 127 | 149 | 246 | 1.54e-17 | 83.6 |
| Msa0491040 | AT3G10030.2 | 40.777 | 103 | 54 | 2 | 33 | 130 | 149 | 249 | 1.99e-17 | 83.2 |
| Msa0491040 | AT3G14180.1 | 35.772 | 123 | 67 | 2 | 30 | 140 | 61 | 183 | 5.05e-16 | 79.0 |
| Msa0491040 | AT3G58630.2 | 25.773 | 291 | 175 | 10 | 41 | 309 | 22 | 293 | 2.21e-14 | 73.2 |
| Msa0491040 | AT3G58630.1 | 25.773 | 291 | 175 | 10 | 41 | 309 | 22 | 293 | 2.64e-14 | 73.2 |
| Msa0491040 | AT3G24860.1 | 40.698 | 86 | 47 | 2 | 45 | 129 | 65 | 147 | 6.45e-14 | 71.6 |
| Msa0491040 | AT3G11100.1 | 43.333 | 90 | 49 | 2 | 41 | 130 | 18 | 105 | 8.97e-13 | 67.8 |
| Msa0491040 | AT2G44730.1 | 33.673 | 98 | 58 | 1 | 39 | 129 | 58 | 155 | 1.21e-11 | 65.5 |
Find 65 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATCTTCTCTATCTCTTTC+AGG | 0.111026 | 3_4:-13114960 | None:intergenic |
| AAACAAAACAATATTATTAT+TGG | 0.212537 | 3_4:+13112911 | Msa0491040:CDS |
| TTACACTGTGTTTGTGTCTT+TGG | 0.214518 | 3_4:-13113109 | None:intergenic |
| TTGAAGCATATGAATCAAAA+TGG | 0.232049 | 3_4:+13112999 | Msa0491040:CDS |
| TAATTGACTTTAATTGTAGA+TGG | 0.322551 | 3_4:+13115233 | Msa0491040:three_prime_UTR |
| ATGGATTCTTGTTAGCTATA+TGG | 0.326116 | 3_4:-13114753 | None:intergenic |
| TTCAATTAATTAACAAATGA+AGG | 0.338320 | 3_4:+13115273 | Msa0491040:three_prime_UTR |
| CATCTTCTCTATCTCTTTCA+GGG | 0.360575 | 3_4:-13114959 | None:intergenic |
| AGAGAGAGCCACTAGCATTA+TGG | 0.366176 | 3_4:-13112649 | None:intergenic |
| ATCTACAATTAAAGTCAATT+AGG | 0.382284 | 3_4:-13115231 | None:intergenic |
| GTTGATTCATCATTGAGAAT+TGG | 0.394877 | 3_4:+13115099 | Msa0491040:CDS |
| TGGTCATCTCTTCACTAGTT+AGG | 0.401307 | 3_4:-13115186 | None:intergenic |
| GTAGATGGAGGATATTATTA+TGG | 0.406791 | 3_4:+13112807 | Msa0491040:five_prime_UTR |
| ACTAAACAATAATCAAGGTT+TGG | 0.408425 | 3_4:+13113258 | Msa0491040:CDS |
| ATTATTATTGGCAGTGGAAG+TGG | 0.409807 | 3_4:+13112923 | Msa0491040:CDS |
| AACAATATTATTATTGGCAG+TGG | 0.416431 | 3_4:+13112917 | Msa0491040:CDS |
| AAGCGCCGGCGTGCTGCTAT+CGG | 0.427506 | 3_4:-13114782 | None:intergenic |
| AGATTATAATTATTGTCATA+TGG | 0.428312 | 3_4:-13115206 | None:intergenic |
| CAAAACTCAAAGGACAAGAT+TGG | 0.436569 | 3_4:+13113038 | Msa0491040:CDS |
| GGTGATTCTTGTTGTGATGT+TGG | 0.438336 | 3_4:-13112884 | None:intergenic |
| CAAAACTCACATGGATCAAA+TGG | 0.444369 | 3_4:+13113379 | Msa0491040:CDS |
| CTAGTTCAGATGTTTCATCT+TGG | 0.449491 | 3_4:+13113176 | Msa0491040:CDS |
| TGAGGCAAAGAGAGGAGAAA+TGG | 0.461965 | 3_4:+13114993 | Msa0491040:CDS |
| GGTGGAGGAACAACCGTACT+AGG | 0.467128 | 3_4:-13113343 | None:intergenic |
| GACTTGATCTTCTTCTTCGT+GGG | 0.486660 | 3_4:+13113212 | Msa0491040:CDS |
| GATCTTCTTCTTCGTGGGAC+AGG | 0.486736 | 3_4:+13113217 | Msa0491040:CDS |
| AAAACTCAAAGGACAAGATT+GGG | 0.491011 | 3_4:+13113039 | Msa0491040:CDS |
| TGGGAATAGCAGAAAGCATA+AGG | 0.497144 | 3_4:+13114890 | Msa0491040:CDS |
| TGAAGCATATGAATCAAAAT+GGG | 0.499206 | 3_4:+13113000 | Msa0491040:CDS |
| AGACTTGATCTTCTTCTTCG+TGG | 0.502001 | 3_4:+13113211 | Msa0491040:CDS |
| ATTCTTGTTGTGATGTTGGA+GGG | 0.502379 | 3_4:-13112880 | None:intergenic |
| TTGTTAATTAATTGAAGAGA+AGG | 0.502593 | 3_4:-13115266 | None:intergenic |
| CATGAGGCTAAGAATATGAA+AGG | 0.514172 | 3_4:-13112717 | None:intergenic |
| GAGGCAAAAGAAAGAAACAA+TGG | 0.514233 | 3_4:+13114870 | Msa0491040:CDS |
| TGAGCAGTTGTAATTGGTGG+AGG | 0.515009 | 3_4:-13113358 | None:intergenic |
| AGATTGAGTCCATGAAGAAA+AGG | 0.517431 | 3_4:+13113137 | Msa0491040:CDS |
| GGCTAGCAGAGGTGGTGGTA+AGG | 0.529819 | 3_4:+13114914 | Msa0491040:CDS |
| AGGCAAAAGAAAGAAACAAT+GGG | 0.536131 | 3_4:+13114871 | Msa0491040:CDS |
| TATAGCTAACAAGAATCCAT+TGG | 0.536715 | 3_4:+13114756 | Msa0491040:CDS |
| AAGGTCAGAACAAACAAGAA+TGG | 0.538536 | 3_4:+13114933 | Msa0491040:CDS |
| GATTCTTGTTGTGATGTTGG+AGG | 0.544639 | 3_4:-13112881 | None:intergenic |
| TCAATTAATTAACAAATGAA+GGG | 0.550010 | 3_4:+13115274 | Msa0491040:three_prime_UTR |
| CAGAGAACAATAACAACAAG+AGG | 0.552289 | 3_4:+13114851 | Msa0491040:CDS |
| ACAACACTAAACAATAATCA+AGG | 0.555763 | 3_4:+13113253 | Msa0491040:CDS |
| ATAAAATTCCATAATGCTAG+TGG | 0.556361 | 3_4:+13112641 | Msa0491040:five_prime_UTR |
| ATACACAACTAGAGATTGCA+AGG | 0.568347 | 3_4:+13115043 | Msa0491040:CDS |
| CATAAGGTGGCTAGCAGAGG+TGG | 0.573732 | 3_4:+13114906 | Msa0491040:CDS |
| GAAGATGAGAGTTGAAGCTG+AGG | 0.581651 | 3_4:+13114975 | Msa0491040:CDS |
| AAGCATAAGGTGGCTAGCAG+AGG | 0.587151 | 3_4:+13114903 | Msa0491040:CDS |
| GTGCTGCTATCGGTTTCCAA+TGG | 0.590073 | 3_4:-13114772 | None:intergenic |
| AAAAGAGATGAATGGAGTGA+AGG | 0.593095 | 3_4:+13112959 | Msa0491040:CDS |
| AAGGTGGCTAGCAGAGGTGG+TGG | 0.597138 | 3_4:+13114909 | Msa0491040:CDS |
| ATGAGGCTAAGAATATGAAA+GGG | 0.599291 | 3_4:-13112716 | None:intergenic |
| AGAAATAGAGCAAAACTCAA+AGG | 0.604235 | 3_4:+13113028 | Msa0491040:CDS |
| GTTGAAGCTGAGGCAAAGAG+AGG | 0.612939 | 3_4:+13114985 | Msa0491040:CDS |
| ACAACTGCTCAAAACTCACA+TGG | 0.614879 | 3_4:+13113370 | Msa0491040:CDS |
| TGGTGTTGATAAATTAGTCA+AGG | 0.628166 | 3_4:+13113399 | Msa0491040:CDS |
| TGGAAGAAGCTAATGATATG+TGG | 0.630070 | 3_4:+13115119 | Msa0491040:exon |
| TCAGCCACTAGCTCCTAGTA+CGG | 0.644324 | 3_4:+13113330 | Msa0491040:CDS |
| GGAAACCGATAGCAGCACGC+CGG | 0.658154 | 3_4:+13114777 | Msa0491040:CDS |
| ACAACCGTACTAGGAGCTAG+TGG | 0.669765 | 3_4:-13113334 | None:intergenic |
| AGATCAAGTCTAGAATACAA+AGG | 0.687202 | 3_4:-13113199 | None:intergenic |
| GAATAGCAGAAAGCATAAGG+TGG | 0.715377 | 3_4:+13114893 | Msa0491040:CDS |
| GCATGTGACATAACAAGTGG+TGG | 0.722377 | 3_4:-13113292 | None:intergenic |
| TGTGCATGTGACATAACAAG+TGG | 0.766342 | 3_4:-13113295 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTTTTTATTTTATTTTT+AGG | + | chr3_4:13113565-13113584 | Msa0491040:intron | 0.0% |
| !! | AAAAAATAAAAAAAATAAAT+TGG | - | chr3_4:13113809-13113828 | None:intergenic | 0.0% |
| !! | AATAAAATAATTTATATATT+CGG | + | chr3_4:13114186-13114205 | Msa0491040:intron | 0.0% |
| !! | AAACAAAACAATATTATTAT+TGG | + | chr3_4:13112911-13112930 | Msa0491040:CDS | 10.0% |
| !! | AGACTTAAAAAAAATAATTA+TGG | + | chr3_4:13113606-13113625 | Msa0491040:intron | 10.0% |
| !!! | ATTTATTTTAAAGAAATTGA+TGG | + | chr3_4:13114025-13114044 | Msa0491040:intron | 10.0% |
| !!! | TTTAAATATTGATTGTATAA+AGG | + | chr3_4:13114472-13114491 | Msa0491040:intron | 10.0% |
| !!! | ATAATATTGTTTTGTTTTCT+TGG | - | chr3_4:13112908-13112927 | None:intergenic | 15.0% |
| !! | TTGTTAAATATTAAAGTCAA+AGG | + | chr3_4:13113777-13113796 | Msa0491040:intron | 15.0% |
| !! | ATAATAATCAAATTGTTAAG+TGG | + | chr3_4:13114216-13114235 | Msa0491040:intron | 15.0% |
| !! | TAATAATCAAATTGTTAAGT+GGG | + | chr3_4:13114217-13114236 | Msa0491040:intron | 15.0% |
| !! | TTAATGCATATATAGTATAA+TGG | - | chr3_4:13114256-13114275 | None:intergenic | 15.0% |
| !! | TAGTATATGGTTAAAATAAA+TGG | - | chr3_4:13114304-13114323 | None:intergenic | 15.0% |
| !!! | TTTTTTTTCTTTTCTTTTGA+TGG | - | chr3_4:13114445-13114464 | None:intergenic | 15.0% |
| !! | AGATTATAATTATTGTCATA+TGG | - | chr3_4:13115209-13115228 | None:intergenic | 15.0% |
| !! | TTCAATTAATTAACAAATGA+AGG | + | chr3_4:13115273-13115292 | Msa0491040:three_prime_UTR | 15.0% |
| !! | TCAATTAATTAACAAATGAA+GGG | + | chr3_4:13115274-13115293 | Msa0491040:three_prime_UTR | 15.0% |
| !! | GTTAAAAAGTTTATAGTAGA+TGG | + | chr3_4:13112792-13112811 | Msa0491040:five_prime_UTR | 20.0% |
| !!! | TATTTTTAGGACTAAAAAGT+AGG | + | chr3_4:13113578-13113597 | Msa0491040:intron | 20.0% |
| !! | AAAAACAATGATCTTCATAT+AGG | - | chr3_4:13113936-13113955 | None:intergenic | 20.0% |
| !!! | AAGATCATTGTTTTTTTTGA+AGG | + | chr3_4:13113941-13113960 | Msa0491040:intron | 20.0% |
| !!! | AGATCATTGTTTTTTTTGAA+GGG | + | chr3_4:13113942-13113961 | Msa0491040:intron | 20.0% |
| !! | ATATAATCTAAAGAAATGTG+AGG | + | chr3_4:13113994-13114013 | Msa0491040:intron | 20.0% |
| !! | TAAACATGCATAATAGTATA+TGG | - | chr3_4:13114317-13114336 | None:intergenic | 20.0% |
| !! | AAAAAAATTAGTGCATATGT+TGG | + | chr3_4:13114339-13114358 | Msa0491040:intron | 20.0% |
| !!! | GTTTTATATGATTTTACCAT+GGG | - | chr3_4:13114510-13114529 | None:intergenic | 20.0% |
| !!! | AGTTTTATATGATTTTACCA+TGG | - | chr3_4:13114511-13114530 | None:intergenic | 20.0% |
| !! | TAGTAAACTCAAATATCTTT+GGG | - | chr3_4:13114556-13114575 | None:intergenic | 20.0% |
| !! | ATAGTAAACTCAAATATCTT+TGG | - | chr3_4:13114557-13114576 | None:intergenic | 20.0% |
| !! | GATAGCGAAATATATATAAT+TGG | - | chr3_4:13114610-13114629 | None:intergenic | 20.0% |
| !! | ATTTATGATTTCATATTGAC+AGG | + | chr3_4:13114702-13114721 | Msa0491040:intron | 20.0% |
| !! | ATCTACAATTAAAGTCAATT+AGG | - | chr3_4:13115234-13115253 | None:intergenic | 20.0% |
| !!! | TAATTGACTTTAATTGTAGA+TGG | + | chr3_4:13115233-13115252 | Msa0491040:three_prime_UTR | 20.0% |
| !! | TTGTTAATTAATTGAAGAGA+AGG | - | chr3_4:13115269-13115288 | None:intergenic | 20.0% |
| ! | AAGAATGGCTATGAAAAAAA+TGG | - | chr3_4:13112591-13112610 | None:intergenic | 25.0% |
| ! | AAAAAGGGAAAAGAAAAGAA+TGG | - | chr3_4:13112606-13112625 | None:intergenic | 25.0% |
| ! | ATAAAATTCCATAATGCTAG+TGG | + | chr3_4:13112641-13112660 | Msa0491040:five_prime_UTR | 25.0% |
| ! | AAAAAGTTTATAGTAGATGG+AGG | + | chr3_4:13112795-13112814 | Msa0491040:five_prime_UTR | 25.0% |
| ! | AACAATATTATTATTGGCAG+TGG | + | chr3_4:13112917-13112936 | Msa0491040:CDS | 25.0% |
| ! | TTGAAGCATATGAATCAAAA+TGG | + | chr3_4:13112999-13113018 | Msa0491040:CDS | 25.0% |
| ! | TGAAGCATATGAATCAAAAT+GGG | + | chr3_4:13113000-13113019 | Msa0491040:CDS | 25.0% |
| ! | ACAACACTAAACAATAATCA+AGG | + | chr3_4:13113253-13113272 | Msa0491040:CDS | 25.0% |
| ! | ACTAAACAATAATCAAGGTT+TGG | + | chr3_4:13113258-13113277 | Msa0491040:CDS | 25.0% |
| !! | AAGCAATTTTGTAATTTGGA+AGG | - | chr3_4:13113525-13113544 | None:intergenic | 25.0% |
| !! | GAACAAGCAATTTTGTAATT+TGG | - | chr3_4:13113529-13113548 | None:intergenic | 25.0% |
| ! | ATTACAAAATTGCTTGTTCA+AGG | + | chr3_4:13113530-13113549 | Msa0491040:intron | 25.0% |
| ! | AAAACTCACGACTAAAAATA+AGG | + | chr3_4:13113700-13113719 | Msa0491040:intron | 25.0% |
| ! | TTTCACTCACATAATTAAGT+AGG | - | chr3_4:13113897-13113916 | None:intergenic | 25.0% |
| ! | GCAATAAGAAATTCATTTGA+AGG | - | chr3_4:13114123-13114142 | None:intergenic | 25.0% |
| !! | TGATTGTATAAAGGTACAAA+AGG | + | chr3_4:13114481-13114500 | Msa0491040:intron | 25.0% |
| ATGAGGCTAAGAATATGAAA+GGG | - | chr3_4:13112719-13112738 | None:intergenic | 30.0% | |
| GTAGATGGAGGATATTATTA+TGG | + | chr3_4:13112807-13112826 | Msa0491040:five_prime_UTR | 30.0% | |
| AGAGACTAAAAAGAGATGAA+TGG | + | chr3_4:13112951-13112970 | Msa0491040:CDS | 30.0% | |
| AGAAATAGAGCAAAACTCAA+AGG | + | chr3_4:13113028-13113047 | Msa0491040:CDS | 30.0% | |
| AAAACTCAAAGGACAAGATT+GGG | + | chr3_4:13113039-13113058 | Msa0491040:CDS | 30.0% | |
| ! | TGATCTATACCTTTTCTTCA+TGG | - | chr3_4:13113149-13113168 | None:intergenic | 30.0% |
| ! | AGATCAAGTCTAGAATACAA+AGG | - | chr3_4:13113202-13113221 | None:intergenic | 30.0% |
| !!! | TAATCAAGGTTTGGTTTTGT+TGG | + | chr3_4:13113267-13113286 | Msa0491040:CDS | 30.0% |
| !! | TGGTGTTGATAAATTAGTCA+AGG | + | chr3_4:13113399-13113418 | Msa0491040:CDS | 30.0% |
| GAATGCTGCTGAATAATTAT+TGG | + | chr3_4:13114400-13114419 | Msa0491040:intron | 30.0% | |
| ! | TGGGAGAATGAATATTTTCA+TGG | - | chr3_4:13114537-13114556 | None:intergenic | 30.0% |
| ATGGATTCTTGTTAGCTATA+TGG | - | chr3_4:13114756-13114775 | None:intergenic | 30.0% | |
| TATAGCTAACAAGAATCCAT+TGG | + | chr3_4:13114756-13114775 | Msa0491040:CDS | 30.0% | |
| AGGCAAAAGAAAGAAACAAT+GGG | + | chr3_4:13114871-13114890 | Msa0491040:CDS | 30.0% | |
| ! | GTTGATTCATCATTGAGAAT+TGG | + | chr3_4:13115099-13115118 | Msa0491040:CDS | 30.0% |
| !!! | GCTTGTTTTTTTCTTCTTCT+TGG | + | chr3_4:13115301-13115320 | Msa0491040:three_prime_UTR | 30.0% |
| CATGAGGCTAAGAATATGAA+AGG | - | chr3_4:13112720-13112739 | None:intergenic | 35.0% | |
| !! | AAAGTTTTGTAGCTCACATG+AGG | - | chr3_4:13112736-13112755 | None:intergenic | 35.0% |
| ! | ATTCTTGTTGTGATGTTGGA+GGG | - | chr3_4:13112883-13112902 | None:intergenic | 35.0% |
| ATTATTATTGGCAGTGGAAG+TGG | + | chr3_4:13112923-13112942 | Msa0491040:CDS | 35.0% | |
| AAAAGAGATGAATGGAGTGA+AGG | + | chr3_4:13112959-13112978 | Msa0491040:CDS | 35.0% | |
| CAAAACTCAAAGGACAAGAT+TGG | + | chr3_4:13113038-13113057 | Msa0491040:CDS | 35.0% | |
| TTACACTGTGTTTGTGTCTT+TGG | - | chr3_4:13113112-13113131 | None:intergenic | 35.0% | |
| AGATTGAGTCCATGAAGAAA+AGG | + | chr3_4:13113137-13113156 | Msa0491040:CDS | 35.0% | |
| CTAGTTCAGATGTTTCATCT+TGG | + | chr3_4:13113176-13113195 | Msa0491040:CDS | 35.0% | |
| ! | TTTTGAGCAGTTGTAATTGG+TGG | - | chr3_4:13113364-13113383 | None:intergenic | 35.0% |
| !!! | GAGTTTTGAGCAGTTGTAAT+TGG | - | chr3_4:13113367-13113386 | None:intergenic | 35.0% |
| CAAAACTCACATGGATCAAA+TGG | + | chr3_4:13113379-13113398 | Msa0491040:CDS | 35.0% | |
| TATTCTCACTTGTCTAAGCA+AGG | - | chr3_4:13114150-13114169 | None:intergenic | 35.0% | |
| ! | CAAGTGAGAATATAACTTGC+AGG | + | chr3_4:13114158-13114177 | Msa0491040:intron | 35.0% |
| CAGAGAACAATAACAACAAG+AGG | + | chr3_4:13114851-13114870 | Msa0491040:CDS | 35.0% | |
| GAGGCAAAAGAAAGAAACAA+TGG | + | chr3_4:13114870-13114889 | Msa0491040:CDS | 35.0% | |
| AAGGTCAGAACAAACAAGAA+TGG | + | chr3_4:13114933-13114952 | Msa0491040:CDS | 35.0% | |
| CATCTTCTCTATCTCTTTCA+GGG | - | chr3_4:13114962-13114981 | None:intergenic | 35.0% | |
| TCATCTTCTCTATCTCTTTC+AGG | - | chr3_4:13114963-13114982 | None:intergenic | 35.0% | |
| ATACACAACTAGAGATTGCA+AGG | + | chr3_4:13115043-13115062 | Msa0491040:CDS | 35.0% | |
| TGGAAGAAGCTAATGATATG+TGG | + | chr3_4:13115119-13115138 | Msa0491040:exon | 35.0% | |
| ! | GATTCTTGTTGTGATGTTGG+AGG | - | chr3_4:13112884-13112903 | None:intergenic | 40.0% |
| ! | GGTGATTCTTGTTGTGATGT+TGG | - | chr3_4:13112887-13112906 | None:intergenic | 40.0% |
| AGACTTGATCTTCTTCTTCG+TGG | + | chr3_4:13113211-13113230 | Msa0491040:CDS | 40.0% | |
| GACTTGATCTTCTTCTTCGT+GGG | + | chr3_4:13113212-13113231 | Msa0491040:CDS | 40.0% | |
| TGTGCATGTGACATAACAAG+TGG | - | chr3_4:13113298-13113317 | None:intergenic | 40.0% | |
| ACAACTGCTCAAAACTCACA+TGG | + | chr3_4:13113370-13113389 | Msa0491040:CDS | 40.0% | |
| AGTACCTTAGTGCGTTACTT+AGG | + | chr3_4:13114364-13114383 | Msa0491040:intron | 40.0% | |
| AAGGTACAAAAGGTTTCCCA+TGG | + | chr3_4:13114491-13114510 | Msa0491040:intron | 40.0% | |
| ! | TGGGAATAGCAGAAAGCATA+AGG | + | chr3_4:13114890-13114909 | Msa0491040:CDS | 40.0% |
| ! | GAATAGCAGAAAGCATAAGG+TGG | + | chr3_4:13114893-13114912 | Msa0491040:CDS | 40.0% |
| TGGTCATCTCTTCACTAGTT+AGG | - | chr3_4:13115189-13115208 | None:intergenic | 40.0% | |
| AGAGAGAGCCACTAGCATTA+TGG | - | chr3_4:13112652-13112671 | None:intergenic | 45.0% | |
| GCATGTGACATAACAAGTGG+TGG | - | chr3_4:13113295-13113314 | None:intergenic | 45.0% | |
| TGAGCAGTTGTAATTGGTGG+AGG | - | chr3_4:13113361-13113380 | None:intergenic | 45.0% | |
| GCATCCTAAGTAACGCACTA+AGG | - | chr3_4:13114371-13114390 | None:intergenic | 45.0% | |
| !! | TCTTTTTCGCTGTAAAGCGC+CGG | - | chr3_4:13114799-13114818 | None:intergenic | 45.0% |
| ACGAGCAGAGAAGCAAAAAG+AGG | + | chr3_4:13114818-13114837 | Msa0491040:CDS | 45.0% | |
| GAAGATGAGAGTTGAAGCTG+AGG | + | chr3_4:13114975-13114994 | Msa0491040:CDS | 45.0% | |
| TGAGGCAAAGAGAGGAGAAA+TGG | + | chr3_4:13114993-13115012 | Msa0491040:CDS | 45.0% | |
| !!! | TTTTATATAAAAAAGAAAAA+GGG | - | chr3_4:13112621-13112640 | None:intergenic | 5.0% |
| !!! | TTTTTATATAAAAAAGAAAA+AGG | - | chr3_4:13112622-13112641 | None:intergenic | 5.0% |
| GATCTTCTTCTTCGTGGGAC+AGG | + | chr3_4:13113217-13113236 | Msa0491040:CDS | 50.0% | |
| TCAGCCACTAGCTCCTAGTA+CGG | + | chr3_4:13113330-13113349 | Msa0491040:CDS | 50.0% | |
| ACAACCGTACTAGGAGCTAG+TGG | - | chr3_4:13113337-13113356 | None:intergenic | 50.0% | |
| !! | GTGCTGCTATCGGTTTCCAA+TGG | - | chr3_4:13114775-13114794 | None:intergenic | 50.0% |
| AAGCATAAGGTGGCTAGCAG+AGG | + | chr3_4:13114903-13114922 | Msa0491040:CDS | 50.0% | |
| GTTGAAGCTGAGGCAAAGAG+AGG | + | chr3_4:13114985-13115004 | Msa0491040:CDS | 50.0% | |
| GGTGGAGGAACAACCGTACT+AGG | - | chr3_4:13113346-13113365 | None:intergenic | 55.0% | |
| CATAAGGTGGCTAGCAGAGG+TGG | + | chr3_4:13114906-13114925 | Msa0491040:CDS | 55.0% | |
| GGAAACCGATAGCAGCACGC+CGG | + | chr3_4:13114777-13114796 | Msa0491040:CDS | 60.0% | |
| AAGGTGGCTAGCAGAGGTGG+TGG | + | chr3_4:13114909-13114928 | Msa0491040:CDS | 60.0% | |
| ! | GGCTAGCAGAGGTGGTGGTA+AGG | + | chr3_4:13114914-13114933 | Msa0491040:CDS | 60.0% |
| !! | AAGCGCCGGCGTGCTGCTAT+CGG | - | chr3_4:13114785-13114804 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 13112588 | 13115370 | 13112588 | ID=Msa0491040;Name=Msa0491040 |
| chr3_4 | mRNA | 13112588 | 13115370 | 13112588 | ID=Msa0491040-mRNA-1;Parent=Msa0491040;Name=Msa0491040-mRNA-1;_AED=0.01;_eAED=0.01;_QI=251|1|1|1|1|1|2|239|329 |
| chr3_4 | exon | 13112588 | 13113420 | 13112588 | ID=Msa0491040-mRNA-1:exon:4004;Parent=Msa0491040-mRNA-1 |
| chr3_4 | exon | 13114724 | 13115370 | 13114724 | ID=Msa0491040-mRNA-1:exon:4005;Parent=Msa0491040-mRNA-1 |
| chr3_4 | five_prime_UTR | 13112588 | 13112838 | 13112588 | ID=Msa0491040-mRNA-1:five_prime_utr;Parent=Msa0491040-mRNA-1 |
| chr3_4 | CDS | 13112839 | 13113420 | 13112839 | ID=Msa0491040-mRNA-1:cds;Parent=Msa0491040-mRNA-1 |
| chr3_4 | CDS | 13114724 | 13115131 | 13114724 | ID=Msa0491040-mRNA-1:cds;Parent=Msa0491040-mRNA-1 |
| chr3_4 | three_prime_UTR | 13115132 | 13115370 | 13115132 | ID=Msa0491040-mRNA-1:three_prime_utr;Parent=Msa0491040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
