Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534010 | XP_013454869.1 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 9.13e-115 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534010 | sp|O26373|Y273_METTH | 42.236 | 161 | 80 | 3 | 9 | 169 | 1 | 148 | 3.67e-31 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534010 | A0A072UGX9 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 4.36e-115 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0203110 | Msa0534010 | 0.808725 | 2.689604e-50 | -8.615850e-47 |
| Msa0246250 | Msa0534010 | 0.818095 | 2.344412e-52 | -8.615850e-47 |
| Msa0534010 | Msa0590020 | 0.991224 | 1.583534e-186 | -8.615850e-47 |
| Msa0534010 | Msa0630460 | 0.887194 | 1.767463e-72 | -8.615850e-47 |
| Msa0534010 | Msa0668760 | 0.820792 | 5.687879e-53 | -8.615850e-47 |
| Msa0534010 | Msa0971850 | 0.807006 | 6.238920e-50 | -8.615850e-47 |
| Msa0534010 | Msa1440190 | 0.808115 | 3.629455e-50 | -8.615850e-47 |
| Msa0534010 | Msa1449750 | 0.805308 | 1.421590e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534010 | MtrunA17_Chr4g0007391 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 8.40e-119 | 332 |
| Msa0534010 | MtrunA17_Chr4g0007401 | 63.473 | 167 | 59 | 1 | 5 | 169 | 2 | 168 | 8.58e-71 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0534010 | AT5G01300.1 | 66.258 | 163 | 51 | 1 | 6 | 168 | 3 | 161 | 2.63e-76 | 225 |
| Msa0534010 | AT5G01300.3 | 65.957 | 141 | 44 | 1 | 6 | 146 | 3 | 139 | 6.47e-66 | 198 |
| Msa0534010 | AT5G01300.2 | 65.600 | 125 | 39 | 1 | 44 | 168 | 7 | 127 | 1.67e-55 | 171 |
Find 72 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGGTATAAGCGGACTTTC+TGG | 0.166026 | 4_1:-9307764 | None:intergenic |
| GAATATTCCTCCGACAATTA+AGG | 0.234000 | 4_1:+9307805 | Msa0534010:CDS |
| TTTCCTTCGTTTGCTATTGC+TGG | 0.274471 | 4_1:-9307611 | None:intergenic |
| TTCTCTCATTGGATTCAAAA+TGG | 0.287837 | 4_1:-9308602 | None:intergenic |
| TTCTTGTTTCTTTGTGATGA+TGG | 0.316611 | 4_1:-9307525 | None:intergenic |
| TGAACTTCATCTGGGTAATA+AGG | 0.317800 | 4_1:+9307985 | Msa0534010:CDS |
| CGCTTATACCGTGGACATGC+TGG | 0.322576 | 4_1:+9307774 | Msa0534010:CDS |
| AAATGAAGCTCTTCTCTCAT+TGG | 0.381317 | 4_1:-9308613 | None:intergenic |
| TAAGACAAATCTAGTGTAAA+GGG | 0.384441 | 4_1:-9308639 | None:intergenic |
| CTTGGATGATGAACTTCATC+TGG | 0.387313 | 4_1:+9307976 | Msa0534010:CDS |
| TCCTAGCACGTGCCCTTCCT+TGG | 0.387726 | 4_1:-9308484 | None:intergenic |
| TCCGACAATTAAGGGATTGC+CGG | 0.389648 | 4_1:+9307814 | Msa0534010:CDS |
| AATATTCCTCCGACAATTAA+GGG | 0.395193 | 4_1:+9307806 | Msa0534010:CDS |
| TTAAAGAAGGGAACAATGAT+TGG | 0.395214 | 4_1:+9307885 | Msa0534010:CDS |
| CTTTGCTCCTTGTCCTTCAT+CGG | 0.398400 | 4_1:-9307651 | None:intergenic |
| GGATTGCCGGAGGGGTTCTC+CGG | 0.431051 | 4_1:+9307827 | Msa0534010:CDS |
| ACGGTATAAGCGGACTTTCT+GGG | 0.437141 | 4_1:-9307763 | None:intergenic |
| GGAGTTTAAGCTCTATGCCT+TGG | 0.440324 | 4_1:+9307958 | Msa0534010:CDS |
| GAGATGGGTGGTGAGTATGC+TGG | 0.451941 | 4_1:+9307860 | Msa0534010:CDS |
| GAATTAATTGCAGGTGACTA+AGG | 0.454093 | 4_1:+9308446 | Msa0534010:intron |
| GGTTGCCTACACATGGTCAT+AGG | 0.464896 | 4_1:+9307933 | Msa0534010:CDS |
| CCTTCATCGGTGAATTGTCT+TGG | 0.471085 | 4_1:-9307638 | None:intergenic |
| ATAAGACAAATCTAGTGTAA+AGG | 0.473096 | 4_1:-9308640 | None:intergenic |
| AAAATCTCTTGCACTTGTTG+TGG | 0.474474 | 4_1:+9307721 | Msa0534010:CDS |
| AGATGGGTGGTGAGTATGCT+GGG | 0.474728 | 4_1:+9307861 | Msa0534010:CDS |
| TCCGGCAATCCCTTAATTGT+CGG | 0.476702 | 4_1:-9307815 | None:intergenic |
| CCAAGACAATTCACCGATGA+AGG | 0.486370 | 4_1:+9307638 | Msa0534010:CDS |
| GCCAAGGAAGGGCACGTGCT+AGG | 0.486472 | 4_1:+9308483 | Msa0534010:CDS |
| GAGTATGCTGGGATTAAAGA+AGG | 0.496910 | 4_1:+9307872 | Msa0534010:CDS |
| ATAAGCGGACTTTCTGGGTC+AGG | 0.498188 | 4_1:-9307758 | None:intergenic |
| GGAGAAAACATTGGAGGCCA+AGG | 0.504623 | 4_1:+9308467 | Msa0534010:CDS |
| ATCTCTTGCACTTGTTGTGG+AGG | 0.520838 | 4_1:+9307724 | Msa0534010:CDS |
| CAGAAAGTCCGCTTATACCG+TGG | 0.527571 | 4_1:+9307765 | Msa0534010:CDS |
| CTCCGGAAAAGAAGAGGAGA+TGG | 0.540842 | 4_1:+9307844 | Msa0534010:CDS |
| CAATTAAGGGATTGCCGGAG+GGG | 0.541055 | 4_1:+9307819 | Msa0534010:CDS |
| GCTTATACCGTGGACATGCT+GGG | 0.546588 | 4_1:+9307775 | Msa0534010:CDS |
| AACAACAATATGGCTAGTGA+TGG | 0.549492 | 4_1:+9307563 | Msa0534010:exon |
| ACATATCACCACCATTGGAA+TGG | 0.559482 | 4_1:+9307678 | Msa0534010:CDS |
| AACCTGGTTGGCGTGGTCCG+AGG | 0.559829 | 4_1:+9307912 | Msa0534010:CDS |
| AACCTCGGACCACGCCAACC+AGG | 0.567436 | 4_1:-9307914 | None:intergenic |
| ACCGTGGACATGCTGGGTCG+TGG | 0.570804 | 4_1:+9307781 | Msa0534010:CDS |
| AAAACATTGGAGGCCAAGGA+AGG | 0.572417 | 4_1:+9308471 | Msa0534010:CDS |
| ACAATTAAGGGATTGCCGGA+GGG | 0.581121 | 4_1:+9307818 | Msa0534010:CDS |
| GCCTACACATGGTCATAGGT+TGG | 0.588655 | 4_1:+9307937 | Msa0534010:CDS |
| ATGATTGGAAACAACCTGGT+TGG | 0.593613 | 4_1:+9307900 | Msa0534010:CDS |
| CAGATGAAGTTCATCATCCA+AGG | 0.593869 | 4_1:-9307975 | None:intergenic |
| GGTCCGAGGTTGCCTACACA+TGG | 0.594491 | 4_1:+9307926 | Msa0534010:CDS |
| TTGTTTCTTTGTGATGATGG+TGG | 0.596105 | 4_1:-9307522 | None:intergenic |
| GACAATTAAGGGATTGCCGG+AGG | 0.600990 | 4_1:+9307817 | Msa0534010:CDS |
| GGGGTTCTCCGGAAAAGAAG+AGG | 0.603224 | 4_1:+9307838 | Msa0534010:CDS |
| TGGAAGTGAAGTGTTCAAGT+TGG | 0.611451 | 4_1:+9307583 | Msa0534010:CDS |
| GACTAAGGAGAAAACATTGG+AGG | 0.613416 | 4_1:+9308461 | Msa0534010:CDS |
| CAATTCACCGATGAAGGACA+AGG | 0.614163 | 4_1:+9307644 | Msa0534010:CDS |
| TGACCATGTGTAGGCAACCT+CGG | 0.615320 | 4_1:-9307929 | None:intergenic |
| ACCACGACCCAGCATGTCCA+CGG | 0.618296 | 4_1:-9307782 | None:intergenic |
| CAGCATGTCCACGGTATAAG+CGG | 0.625674 | 4_1:-9307773 | None:intergenic |
| TTGGATGATGAACTTCATCT+GGG | 0.626681 | 4_1:+9307977 | Msa0534010:CDS |
| TCCGGAAAAGAAGAGGAGAT+GGG | 0.627075 | 4_1:+9307845 | Msa0534010:CDS |
| GGTGACTAAGGAGAAAACAT+TGG | 0.627642 | 4_1:+9308458 | Msa0534010:intron |
| GGTATGTTGTACCATTCCAA+TGG | 0.628439 | 4_1:-9307689 | None:intergenic |
| GAATGGTACAACATACCAGA+GGG | 0.631694 | 4_1:+9307695 | Msa0534010:CDS |
| AAACATTGGAGGCCAAGGAA+GGG | 0.635260 | 4_1:+9308472 | Msa0534010:CDS |
| TGGAAACAACCTGGTTGGCG+TGG | 0.635575 | 4_1:+9307905 | Msa0534010:CDS |
| GGCAATCCCTTAATTGTCGG+AGG | 0.637599 | 4_1:-9307812 | None:intergenic |
| AACAATGATTGGAAACAACC+TGG | 0.638702 | 4_1:+9307896 | Msa0534010:CDS |
| AGTATGCTGGGATTAAAGAA+GGG | 0.646256 | 4_1:+9307873 | Msa0534010:CDS |
| ATGTTGTACCATTCCAATGG+TGG | 0.671854 | 4_1:-9307686 | None:intergenic |
| GGAAAAGAAGAGGAGATGGG+TGG | 0.683952 | 4_1:+9307848 | Msa0534010:CDS |
| TCACCAGCAATAGCAAACGA+AGG | 0.704482 | 4_1:+9307608 | Msa0534010:CDS |
| TCCAACCTATGACCATGTGT+AGG | 0.705834 | 4_1:-9307938 | None:intergenic |
| GGAATGGTACAACATACCAG+AGG | 0.732665 | 4_1:+9307694 | Msa0534010:CDS |
| AATGGTACAACATACCAGAG+GGG | 0.810028 | 4_1:+9307696 | Msa0534010:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATAACAATGAAAT+TGG | + | chr4_1:9308136-9308155 | Msa0534010:intron | 10.0% |
| !! | ATAAAAAATAACAATGAAAT+TGG | + | chr4_1:9308136-9308155 | Msa0534010:intron | 10.0% |
| !!! | TTTTTTTCTCTTCTTTAATT+TGG | + | chr4_1:9308422-9308441 | Msa0534010:intron | 15.0% |
| !!! | TTTTTTTCTCTTCTTTAATT+TGG | + | chr4_1:9308422-9308441 | Msa0534010:intron | 15.0% |
| !! | TTTGTCTATCCAAATTAATA+CGG | - | chr4_1:9308296-9308315 | None:intergenic | 20.0% |
| !! | CTTATTTATAAAAATGCATC+CGG | + | chr4_1:9308321-9308340 | Msa0534010:intron | 20.0% |
| !! | CTAAAAAACATAATTCACTT+CGG | - | chr4_1:9308704-9308723 | None:intergenic | 20.0% |
| !!! | GAAGTGAATTATGTTTTTTA+GGG | + | chr4_1:9308703-9308722 | Msa0534010:three_prime_UTR | 20.0% |
| !! | TTTGTCTATCCAAATTAATA+CGG | - | chr4_1:9308296-9308315 | None:intergenic | 20.0% |
| !! | CTTATTTATAAAAATGCATC+CGG | + | chr4_1:9308321-9308340 | Msa0534010:intron | 20.0% |
| !! | CTAAAAAACATAATTCACTT+CGG | - | chr4_1:9308704-9308723 | None:intergenic | 20.0% |
| !!! | GAAGTGAATTATGTTTTTTA+GGG | + | chr4_1:9308703-9308722 | Msa0534010:three_prime_UTR | 20.0% |
| ! | ACTCAAGAAAAACAACAATA+TGG | + | chr4_1:9307553-9307572 | Msa0534010:exon | 25.0% |
| ! | TTGTCTATCCAAATTAATAC+GGG | - | chr4_1:9308295-9308314 | None:intergenic | 25.0% |
| !!! | TAGATTAACTTGTTTGAAAG+TGG | + | chr4_1:9308395-9308414 | Msa0534010:intron | 25.0% |
| !! | TAATTTGGTGAATTAATTGC+AGG | + | chr4_1:9308437-9308456 | Msa0534010:intron | 25.0% |
| ! | TAAGACAAATCTAGTGTAAA+GGG | - | chr4_1:9308642-9308661 | None:intergenic | 25.0% |
| ! | ATAAGACAAATCTAGTGTAA+AGG | - | chr4_1:9308643-9308662 | None:intergenic | 25.0% |
| !!! | CGAAGTGAATTATGTTTTTT+AGG | + | chr4_1:9308702-9308721 | Msa0534010:three_prime_UTR | 25.0% |
| ! | ACTCAAGAAAAACAACAATA+TGG | + | chr4_1:9307553-9307572 | Msa0534010:exon | 25.0% |
| ! | TTGTCTATCCAAATTAATAC+GGG | - | chr4_1:9308295-9308314 | None:intergenic | 25.0% |
| !!! | TAGATTAACTTGTTTGAAAG+TGG | + | chr4_1:9308395-9308414 | Msa0534010:intron | 25.0% |
| !! | TAATTTGGTGAATTAATTGC+AGG | + | chr4_1:9308437-9308456 | Msa0534010:intron | 25.0% |
| ! | TAAGACAAATCTAGTGTAAA+GGG | - | chr4_1:9308642-9308661 | None:intergenic | 25.0% |
| ! | ATAAGACAAATCTAGTGTAA+AGG | - | chr4_1:9308643-9308662 | None:intergenic | 25.0% |
| !!! | CGAAGTGAATTATGTTTTTT+AGG | + | chr4_1:9308702-9308721 | Msa0534010:three_prime_UTR | 25.0% |
| ! | TTCTTGTTTCTTTGTGATGA+TGG | - | chr4_1:9307528-9307547 | None:intergenic | 30.0% |
| AATATTCCTCCGACAATTAA+GGG | + | chr4_1:9307806-9307825 | Msa0534010:CDS | 30.0% | |
| TTAAAGAAGGGAACAATGAT+TGG | + | chr4_1:9307885-9307904 | Msa0534010:CDS | 30.0% | |
| TAAACTAAACCCATTTGAGT+TGG | + | chr4_1:9308215-9308234 | Msa0534010:intron | 30.0% | |
| AATTCTCTCCCGTATTAATT+TGG | + | chr4_1:9308284-9308303 | Msa0534010:intron | 30.0% | |
| TAGTCTATACAAATTGACAC+CGG | - | chr4_1:9308343-9308362 | None:intergenic | 30.0% | |
| TTCTCTCATTGGATTCAAAA+TGG | - | chr4_1:9308605-9308624 | None:intergenic | 30.0% | |
| ! | TTCTTGTTTCTTTGTGATGA+TGG | - | chr4_1:9307528-9307547 | None:intergenic | 30.0% |
| AATATTCCTCCGACAATTAA+GGG | + | chr4_1:9307806-9307825 | Msa0534010:CDS | 30.0% | |
| TTAAAGAAGGGAACAATGAT+TGG | + | chr4_1:9307885-9307904 | Msa0534010:CDS | 30.0% | |
| TAAACTAAACCCATTTGAGT+TGG | + | chr4_1:9308215-9308234 | Msa0534010:intron | 30.0% | |
| AATTCTCTCCCGTATTAATT+TGG | + | chr4_1:9308284-9308303 | Msa0534010:intron | 30.0% | |
| TAGTCTATACAAATTGACAC+CGG | - | chr4_1:9308343-9308362 | None:intergenic | 30.0% | |
| TTCTCTCATTGGATTCAAAA+TGG | - | chr4_1:9308605-9308624 | None:intergenic | 30.0% | |
| !! | TTGTTTCTTTGTGATGATGG+TGG | - | chr4_1:9307525-9307544 | None:intergenic | 35.0% |
| AACAACAATATGGCTAGTGA+TGG | + | chr4_1:9307563-9307582 | Msa0534010:exon | 35.0% | |
| GAAAAACATATCACCACCAT+TGG | + | chr4_1:9307673-9307692 | Msa0534010:CDS | 35.0% | |
| ! | AAAATCTCTTGCACTTGTTG+TGG | + | chr4_1:9307721-9307740 | Msa0534010:CDS | 35.0% |
| GAATATTCCTCCGACAATTA+AGG | + | chr4_1:9307805-9307824 | Msa0534010:CDS | 35.0% | |
| AGTATGCTGGGATTAAAGAA+GGG | + | chr4_1:9307873-9307892 | Msa0534010:CDS | 35.0% | |
| AACAATGATTGGAAACAACC+TGG | + | chr4_1:9307896-9307915 | Msa0534010:CDS | 35.0% | |
| TTGGATGATGAACTTCATCT+GGG | + | chr4_1:9307977-9307996 | Msa0534010:CDS | 35.0% | |
| TGAACTTCATCTGGGTAATA+AGG | + | chr4_1:9307985-9308004 | Msa0534010:CDS | 35.0% | |
| !! | TAAACCCATTTGAGTTGGTT+TGG | + | chr4_1:9308220-9308239 | Msa0534010:intron | 35.0% |
| GAATTAATTGCAGGTGACTA+AGG | + | chr4_1:9308446-9308465 | Msa0534010:intron | 35.0% | |
| AAATGAAGCTCTTCTCTCAT+TGG | - | chr4_1:9308616-9308635 | None:intergenic | 35.0% | |
| !! | TTGTTTCTTTGTGATGATGG+TGG | - | chr4_1:9307525-9307544 | None:intergenic | 35.0% |
| AACAACAATATGGCTAGTGA+TGG | + | chr4_1:9307563-9307582 | Msa0534010:exon | 35.0% | |
| GAAAAACATATCACCACCAT+TGG | + | chr4_1:9307673-9307692 | Msa0534010:CDS | 35.0% | |
| ! | AAAATCTCTTGCACTTGTTG+TGG | + | chr4_1:9307721-9307740 | Msa0534010:CDS | 35.0% |
| GAATATTCCTCCGACAATTA+AGG | + | chr4_1:9307805-9307824 | Msa0534010:CDS | 35.0% | |
| AGTATGCTGGGATTAAAGAA+GGG | + | chr4_1:9307873-9307892 | Msa0534010:CDS | 35.0% | |
| AACAATGATTGGAAACAACC+TGG | + | chr4_1:9307896-9307915 | Msa0534010:CDS | 35.0% | |
| TTGGATGATGAACTTCATCT+GGG | + | chr4_1:9307977-9307996 | Msa0534010:CDS | 35.0% | |
| TGAACTTCATCTGGGTAATA+AGG | + | chr4_1:9307985-9308004 | Msa0534010:CDS | 35.0% | |
| !! | TAAACCCATTTGAGTTGGTT+TGG | + | chr4_1:9308220-9308239 | Msa0534010:intron | 35.0% |
| GAATTAATTGCAGGTGACTA+AGG | + | chr4_1:9308446-9308465 | Msa0534010:intron | 35.0% | |
| AAATGAAGCTCTTCTCTCAT+TGG | - | chr4_1:9308616-9308635 | None:intergenic | 35.0% | |
| ! | TGGAAGTGAAGTGTTCAAGT+TGG | + | chr4_1:9307583-9307602 | Msa0534010:CDS | 40.0% |
| !! | TTTCCTTCGTTTGCTATTGC+TGG | - | chr4_1:9307614-9307633 | None:intergenic | 40.0% |
| ACATATCACCACCATTGGAA+TGG | + | chr4_1:9307678-9307697 | Msa0534010:CDS | 40.0% | |
| ATGTTGTACCATTCCAATGG+TGG | - | chr4_1:9307689-9307708 | None:intergenic | 40.0% | |
| GGTATGTTGTACCATTCCAA+TGG | - | chr4_1:9307692-9307711 | None:intergenic | 40.0% | |
| GAATGGTACAACATACCAGA+GGG | + | chr4_1:9307695-9307714 | Msa0534010:CDS | 40.0% | |
| AATGGTACAACATACCAGAG+GGG | + | chr4_1:9307696-9307715 | Msa0534010:CDS | 40.0% | |
| GAGTATGCTGGGATTAAAGA+AGG | + | chr4_1:9307872-9307891 | Msa0534010:CDS | 40.0% | |
| ATGATTGGAAACAACCTGGT+TGG | + | chr4_1:9307900-9307919 | Msa0534010:CDS | 40.0% | |
| CAGATGAAGTTCATCATCCA+AGG | - | chr4_1:9307978-9307997 | None:intergenic | 40.0% | |
| CTTGGATGATGAACTTCATC+TGG | + | chr4_1:9307976-9307995 | Msa0534010:CDS | 40.0% | |
| ACCACCAAACCAACTCAAAT+GGG | - | chr4_1:9308227-9308246 | None:intergenic | 40.0% | |
| GGTGACTAAGGAGAAAACAT+TGG | + | chr4_1:9308458-9308477 | Msa0534010:intron | 40.0% | |
| GACTAAGGAGAAAACATTGG+AGG | + | chr4_1:9308461-9308480 | Msa0534010:CDS | 40.0% | |
| ! | TGGAAGTGAAGTGTTCAAGT+TGG | + | chr4_1:9307583-9307602 | Msa0534010:CDS | 40.0% |
| !! | TTTCCTTCGTTTGCTATTGC+TGG | - | chr4_1:9307614-9307633 | None:intergenic | 40.0% |
| ACATATCACCACCATTGGAA+TGG | + | chr4_1:9307678-9307697 | Msa0534010:CDS | 40.0% | |
| ATGTTGTACCATTCCAATGG+TGG | - | chr4_1:9307689-9307708 | None:intergenic | 40.0% | |
| GGTATGTTGTACCATTCCAA+TGG | - | chr4_1:9307692-9307711 | None:intergenic | 40.0% | |
| GAATGGTACAACATACCAGA+GGG | + | chr4_1:9307695-9307714 | Msa0534010:CDS | 40.0% | |
| AATGGTACAACATACCAGAG+GGG | + | chr4_1:9307696-9307715 | Msa0534010:CDS | 40.0% | |
| GAGTATGCTGGGATTAAAGA+AGG | + | chr4_1:9307872-9307891 | Msa0534010:CDS | 40.0% | |
| ATGATTGGAAACAACCTGGT+TGG | + | chr4_1:9307900-9307919 | Msa0534010:CDS | 40.0% | |
| CAGATGAAGTTCATCATCCA+AGG | - | chr4_1:9307978-9307997 | None:intergenic | 40.0% | |
| CTTGGATGATGAACTTCATC+TGG | + | chr4_1:9307976-9307995 | Msa0534010:CDS | 40.0% | |
| ACCACCAAACCAACTCAAAT+GGG | - | chr4_1:9308227-9308246 | None:intergenic | 40.0% | |
| GGTGACTAAGGAGAAAACAT+TGG | + | chr4_1:9308458-9308477 | Msa0534010:intron | 40.0% | |
| GACTAAGGAGAAAACATTGG+AGG | + | chr4_1:9308461-9308480 | Msa0534010:CDS | 40.0% | |
| TCACCAGCAATAGCAAACGA+AGG | + | chr4_1:9307608-9307627 | Msa0534010:CDS | 45.0% | |
| CCTTCATCGGTGAATTGTCT+TGG | - | chr4_1:9307641-9307660 | None:intergenic | 45.0% | |
| CCAAGACAATTCACCGATGA+AGG | + | chr4_1:9307638-9307657 | Msa0534010:CDS | 45.0% | |
| CAATTCACCGATGAAGGACA+AGG | + | chr4_1:9307644-9307663 | Msa0534010:CDS | 45.0% | |
| CTTTGCTCCTTGTCCTTCAT+CGG | - | chr4_1:9307654-9307673 | None:intergenic | 45.0% | |
| GGAATGGTACAACATACCAG+AGG | + | chr4_1:9307694-9307713 | Msa0534010:CDS | 45.0% | |
| !! | ATCTCTTGCACTTGTTGTGG+AGG | + | chr4_1:9307724-9307743 | Msa0534010:CDS | 45.0% |
| ! | ACGGTATAAGCGGACTTTCT+GGG | - | chr4_1:9307766-9307785 | None:intergenic | 45.0% |
| TCCGACAATTAAGGGATTGC+CGG | + | chr4_1:9307814-9307833 | Msa0534010:CDS | 45.0% | |
| TCCGGCAATCCCTTAATTGT+CGG | - | chr4_1:9307818-9307837 | None:intergenic | 45.0% | |
| ACAATTAAGGGATTGCCGGA+GGG | + | chr4_1:9307818-9307837 | Msa0534010:CDS | 45.0% | |
| TCCGGAAAAGAAGAGGAGAT+GGG | + | chr4_1:9307845-9307864 | Msa0534010:CDS | 45.0% | |
| ! | ACCCATCTCCTCTTCTTTTC+CGG | - | chr4_1:9307849-9307868 | None:intergenic | 45.0% |
| TCCAACCTATGACCATGTGT+AGG | - | chr4_1:9307941-9307960 | None:intergenic | 45.0% | |
| GGAGTTTAAGCTCTATGCCT+TGG | + | chr4_1:9307958-9307977 | Msa0534010:CDS | 45.0% | |
| !! | ACCCATTTGAGTTGGTTTGG+TGG | + | chr4_1:9308223-9308242 | Msa0534010:intron | 45.0% |
| CACCACCAAACCAACTCAAA+TGG | - | chr4_1:9308228-9308247 | None:intergenic | 45.0% | |
| AAAACATTGGAGGCCAAGGA+AGG | + | chr4_1:9308471-9308490 | Msa0534010:CDS | 45.0% | |
| AAACATTGGAGGCCAAGGAA+GGG | + | chr4_1:9308472-9308491 | Msa0534010:CDS | 45.0% | |
| !! | GATGGTGGTGTGTGATTTTG+CGG | - | chr4_1:9307510-9307529 | None:intergenic | 45.0% |
| TCACCAGCAATAGCAAACGA+AGG | + | chr4_1:9307608-9307627 | Msa0534010:CDS | 45.0% | |
| CCTTCATCGGTGAATTGTCT+TGG | - | chr4_1:9307641-9307660 | None:intergenic | 45.0% | |
| CCAAGACAATTCACCGATGA+AGG | + | chr4_1:9307638-9307657 | Msa0534010:CDS | 45.0% | |
| CAATTCACCGATGAAGGACA+AGG | + | chr4_1:9307644-9307663 | Msa0534010:CDS | 45.0% | |
| CTTTGCTCCTTGTCCTTCAT+CGG | - | chr4_1:9307654-9307673 | None:intergenic | 45.0% | |
| GGAATGGTACAACATACCAG+AGG | + | chr4_1:9307694-9307713 | Msa0534010:CDS | 45.0% | |
| !! | ATCTCTTGCACTTGTTGTGG+AGG | + | chr4_1:9307724-9307743 | Msa0534010:CDS | 45.0% |
| ! | ACGGTATAAGCGGACTTTCT+GGG | - | chr4_1:9307766-9307785 | None:intergenic | 45.0% |
| TCCGACAATTAAGGGATTGC+CGG | + | chr4_1:9307814-9307833 | Msa0534010:CDS | 45.0% | |
| TCCGGCAATCCCTTAATTGT+CGG | - | chr4_1:9307818-9307837 | None:intergenic | 45.0% | |
| ACAATTAAGGGATTGCCGGA+GGG | + | chr4_1:9307818-9307837 | Msa0534010:CDS | 45.0% | |
| TCCGGAAAAGAAGAGGAGAT+GGG | + | chr4_1:9307845-9307864 | Msa0534010:CDS | 45.0% | |
| ! | ACCCATCTCCTCTTCTTTTC+CGG | - | chr4_1:9307849-9307868 | None:intergenic | 45.0% |
| TCCAACCTATGACCATGTGT+AGG | - | chr4_1:9307941-9307960 | None:intergenic | 45.0% | |
| GGAGTTTAAGCTCTATGCCT+TGG | + | chr4_1:9307958-9307977 | Msa0534010:CDS | 45.0% | |
| !! | ACCCATTTGAGTTGGTTTGG+TGG | + | chr4_1:9308223-9308242 | Msa0534010:intron | 45.0% |
| CACCACCAAACCAACTCAAA+TGG | - | chr4_1:9308228-9308247 | None:intergenic | 45.0% | |
| AAAACATTGGAGGCCAAGGA+AGG | + | chr4_1:9308471-9308490 | Msa0534010:CDS | 45.0% | |
| AAACATTGGAGGCCAAGGAA+GGG | + | chr4_1:9308472-9308491 | Msa0534010:CDS | 45.0% | |
| ! | GCAAGAGATTTTGTCCCCTC+TGG | - | chr4_1:9307713-9307732 | None:intergenic | 50.0% |
| ! | ATAAGCGGACTTTCTGGGTC+AGG | - | chr4_1:9307761-9307780 | None:intergenic | 50.0% |
| ! | CACGGTATAAGCGGACTTTC+TGG | - | chr4_1:9307767-9307786 | None:intergenic | 50.0% |
| CAGAAAGTCCGCTTATACCG+TGG | + | chr4_1:9307765-9307784 | Msa0534010:CDS | 50.0% | |
| CAGCATGTCCACGGTATAAG+CGG | - | chr4_1:9307776-9307795 | None:intergenic | 50.0% | |
| GCTTATACCGTGGACATGCT+GGG | + | chr4_1:9307775-9307794 | Msa0534010:CDS | 50.0% | |
| GGCAATCCCTTAATTGTCGG+AGG | - | chr4_1:9307815-9307834 | None:intergenic | 50.0% | |
| GACAATTAAGGGATTGCCGG+AGG | + | chr4_1:9307817-9307836 | Msa0534010:CDS | 50.0% | |
| CAATTAAGGGATTGCCGGAG+GGG | + | chr4_1:9307819-9307838 | Msa0534010:CDS | 50.0% | |
| CTCCGGAAAAGAAGAGGAGA+TGG | + | chr4_1:9307844-9307863 | Msa0534010:CDS | 50.0% | |
| GGAAAAGAAGAGGAGATGGG+TGG | + | chr4_1:9307848-9307867 | Msa0534010:CDS | 50.0% | |
| AGATGGGTGGTGAGTATGCT+GGG | + | chr4_1:9307861-9307880 | Msa0534010:CDS | 50.0% | |
| TGACCATGTGTAGGCAACCT+CGG | - | chr4_1:9307932-9307951 | None:intergenic | 50.0% | |
| GGTTGCCTACACATGGTCAT+AGG | + | chr4_1:9307933-9307952 | Msa0534010:CDS | 50.0% | |
| GCCTACACATGGTCATAGGT+TGG | + | chr4_1:9307937-9307956 | Msa0534010:CDS | 50.0% | |
| GGAGAAAACATTGGAGGCCA+AGG | + | chr4_1:9308467-9308486 | Msa0534010:CDS | 50.0% | |
| ! | GCAAGAGATTTTGTCCCCTC+TGG | - | chr4_1:9307713-9307732 | None:intergenic | 50.0% |
| ! | ATAAGCGGACTTTCTGGGTC+AGG | - | chr4_1:9307761-9307780 | None:intergenic | 50.0% |
| ! | CACGGTATAAGCGGACTTTC+TGG | - | chr4_1:9307767-9307786 | None:intergenic | 50.0% |
| CAGAAAGTCCGCTTATACCG+TGG | + | chr4_1:9307765-9307784 | Msa0534010:CDS | 50.0% | |
| CAGCATGTCCACGGTATAAG+CGG | - | chr4_1:9307776-9307795 | None:intergenic | 50.0% | |
| GCTTATACCGTGGACATGCT+GGG | + | chr4_1:9307775-9307794 | Msa0534010:CDS | 50.0% | |
| GGCAATCCCTTAATTGTCGG+AGG | - | chr4_1:9307815-9307834 | None:intergenic | 50.0% | |
| GACAATTAAGGGATTGCCGG+AGG | + | chr4_1:9307817-9307836 | Msa0534010:CDS | 50.0% | |
| CAATTAAGGGATTGCCGGAG+GGG | + | chr4_1:9307819-9307838 | Msa0534010:CDS | 50.0% | |
| CTCCGGAAAAGAAGAGGAGA+TGG | + | chr4_1:9307844-9307863 | Msa0534010:CDS | 50.0% | |
| GGAAAAGAAGAGGAGATGGG+TGG | + | chr4_1:9307848-9307867 | Msa0534010:CDS | 50.0% | |
| AGATGGGTGGTGAGTATGCT+GGG | + | chr4_1:9307861-9307880 | Msa0534010:CDS | 50.0% | |
| TGACCATGTGTAGGCAACCT+CGG | - | chr4_1:9307932-9307951 | None:intergenic | 50.0% | |
| GGTTGCCTACACATGGTCAT+AGG | + | chr4_1:9307933-9307952 | Msa0534010:CDS | 50.0% | |
| GCCTACACATGGTCATAGGT+TGG | + | chr4_1:9307937-9307956 | Msa0534010:CDS | 50.0% | |
| GGAGAAAACATTGGAGGCCA+AGG | + | chr4_1:9308467-9308486 | Msa0534010:CDS | 50.0% | |
| CGCTTATACCGTGGACATGC+TGG | + | chr4_1:9307774-9307793 | Msa0534010:CDS | 55.0% | |
| ! | TCTTTTCCGGAGAACCCCTC+CGG | - | chr4_1:9307836-9307855 | None:intergenic | 55.0% |
| GGGGTTCTCCGGAAAAGAAG+AGG | + | chr4_1:9307838-9307857 | Msa0534010:CDS | 55.0% | |
| GAGATGGGTGGTGAGTATGC+TGG | + | chr4_1:9307860-9307879 | Msa0534010:CDS | 55.0% | |
| TGGAAACAACCTGGTTGGCG+TGG | + | chr4_1:9307905-9307924 | Msa0534010:CDS | 55.0% | |
| CGCTTATACCGTGGACATGC+TGG | + | chr4_1:9307774-9307793 | Msa0534010:CDS | 55.0% | |
| ! | TCTTTTCCGGAGAACCCCTC+CGG | - | chr4_1:9307836-9307855 | None:intergenic | 55.0% |
| GGGGTTCTCCGGAAAAGAAG+AGG | + | chr4_1:9307838-9307857 | Msa0534010:CDS | 55.0% | |
| GAGATGGGTGGTGAGTATGC+TGG | + | chr4_1:9307860-9307879 | Msa0534010:CDS | 55.0% | |
| TGGAAACAACCTGGTTGGCG+TGG | + | chr4_1:9307905-9307924 | Msa0534010:CDS | 55.0% | |
| ACCACGACCCAGCATGTCCA+CGG | - | chr4_1:9307785-9307804 | None:intergenic | 60.0% | |
| GGTCCGAGGTTGCCTACACA+TGG | + | chr4_1:9307926-9307945 | Msa0534010:CDS | 60.0% | |
| TCCTAGCACGTGCCCTTCCT+TGG | - | chr4_1:9308487-9308506 | None:intergenic | 60.0% | |
| ACCACGACCCAGCATGTCCA+CGG | - | chr4_1:9307785-9307804 | None:intergenic | 60.0% | |
| GGTCCGAGGTTGCCTACACA+TGG | + | chr4_1:9307926-9307945 | Msa0534010:CDS | 60.0% | |
| TCCTAGCACGTGCCCTTCCT+TGG | - | chr4_1:9308487-9308506 | None:intergenic | 60.0% | |
| ACCGTGGACATGCTGGGTCG+TGG | + | chr4_1:9307781-9307800 | Msa0534010:CDS | 65.0% | |
| GGATTGCCGGAGGGGTTCTC+CGG | + | chr4_1:9307827-9307846 | Msa0534010:CDS | 65.0% | |
| AACCTGGTTGGCGTGGTCCG+AGG | + | chr4_1:9307912-9307931 | Msa0534010:CDS | 65.0% | |
| AACCTCGGACCACGCCAACC+AGG | - | chr4_1:9307917-9307936 | None:intergenic | 65.0% | |
| ! | GCCAAGGAAGGGCACGTGCT+AGG | + | chr4_1:9308483-9308502 | Msa0534010:CDS | 65.0% |
| ACCGTGGACATGCTGGGTCG+TGG | + | chr4_1:9307781-9307800 | Msa0534010:CDS | 65.0% | |
| GGATTGCCGGAGGGGTTCTC+CGG | + | chr4_1:9307827-9307846 | Msa0534010:CDS | 65.0% | |
| AACCTGGTTGGCGTGGTCCG+AGG | + | chr4_1:9307912-9307931 | Msa0534010:CDS | 65.0% | |
| AACCTCGGACCACGCCAACC+AGG | - | chr4_1:9307917-9307936 | None:intergenic | 65.0% | |
| ! | GCCAAGGAAGGGCACGTGCT+AGG | + | chr4_1:9308483-9308502 | Msa0534010:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 9307508 | 9308736 | 9307508 | ID=Msa0534010;Name=Msa0534010 |
| chr4_1 | mRNA | 9307508 | 9308736 | 9307508 | ID=Msa0534010-mRNA-1;Parent=Msa0534010;Name=Msa0534010-mRNA-1;_AED=0.18;_eAED=0.18;_QI=64|1|1|1|1|1|2|203|169 |
| chr4_1 | exon | 9307508 | 9308006 | 9307508 | ID=Msa0534010-mRNA-1:exon:3044;Parent=Msa0534010-mRNA-1 |
| chr4_1 | exon | 9308459 | 9308736 | 9308459 | ID=Msa0534010-mRNA-1:exon:3045;Parent=Msa0534010-mRNA-1 |
| chr4_1 | five_prime_UTR | 9307508 | 9307571 | 9307508 | ID=Msa0534010-mRNA-1:five_prime_utr;Parent=Msa0534010-mRNA-1 |
| chr4_1 | CDS | 9307572 | 9308006 | 9307572 | ID=Msa0534010-mRNA-1:cds;Parent=Msa0534010-mRNA-1 |
| chr4_1 | CDS | 9308459 | 9308533 | 9308459 | ID=Msa0534010-mRNA-1:cds;Parent=Msa0534010-mRNA-1 |
| chr4_1 | three_prime_UTR | 9308534 | 9308736 | 9308534 | ID=Msa0534010-mRNA-1:three_prime_utr;Parent=Msa0534010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
