Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590020 | XP_013454869.1 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 9.13e-115 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590020 | sp|O26373|Y273_METTH | 42.236 | 161 | 80 | 3 | 9 | 169 | 1 | 148 | 3.67e-31 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0203110 | Msa0590020 | 0.800503 | 1.398078e-48 | -8.615850e-47 |
| Msa0246250 | Msa0590020 | 0.811909 | 5.531191e-51 | -8.615850e-47 |
| Msa0534010 | Msa0590020 | 0.991224 | 1.583534e-186 | -8.615850e-47 |
| Msa0590020 | Msa0630460 | 0.866629 | 2.480238e-65 | -8.615850e-47 |
| Msa0590020 | Msa0668760 | 0.802569 | 5.271667e-49 | -8.615850e-47 |
| Msa0590020 | Msa0971850 | 0.810925 | 9.046809e-51 | -8.615850e-47 |
| Msa0590020 | Msa1440190 | 0.808826 | 2.559091e-50 | -8.615850e-47 |
| Msa0590020 | Msa1449750 | 0.806136 | 9.522961e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590020 | MtrunA17_Chr4g0007391 | 95.858 | 169 | 7 | 0 | 1 | 169 | 1 | 169 | 8.40e-119 | 332 |
| Msa0590020 | MtrunA17_Chr4g0007401 | 63.473 | 167 | 59 | 1 | 5 | 169 | 2 | 168 | 8.58e-71 | 211 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0590020 | AT5G01300.1 | 66.258 | 163 | 51 | 1 | 6 | 168 | 3 | 161 | 2.63e-76 | 225 |
| Msa0590020 | AT5G01300.3 | 65.957 | 141 | 44 | 1 | 6 | 146 | 3 | 139 | 6.47e-66 | 198 |
| Msa0590020 | AT5G01300.2 | 65.600 | 125 | 39 | 1 | 44 | 168 | 7 | 127 | 1.67e-55 | 171 |
Find 72 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CACGGTATAAGCGGACTTTC+TGG | 0.166026 | 4_2:-13384830 | None:intergenic |
| GAATATTCCTCCGACAATTA+AGG | 0.234000 | 4_2:+13384871 | Msa0590020:CDS |
| TTTCCTTCGTTTGCTATTGC+TGG | 0.274471 | 4_2:-13384677 | None:intergenic |
| TTCTCTCATTGGATTCAAAA+TGG | 0.287837 | 4_2:-13385668 | None:intergenic |
| TTCTTGTTTCTTTGTGATGA+TGG | 0.316611 | 4_2:-13384591 | None:intergenic |
| TGAACTTCATCTGGGTAATA+AGG | 0.317800 | 4_2:+13385051 | Msa0590020:CDS |
| CGCTTATACCGTGGACATGC+TGG | 0.322576 | 4_2:+13384840 | Msa0590020:CDS |
| AAATGAAGCTCTTCTCTCAT+TGG | 0.381317 | 4_2:-13385679 | None:intergenic |
| TAAGACAAATCTAGTGTAAA+GGG | 0.384441 | 4_2:-13385705 | None:intergenic |
| CTTGGATGATGAACTTCATC+TGG | 0.387313 | 4_2:+13385042 | Msa0590020:CDS |
| TCCTAGCACGTGCCCTTCCT+TGG | 0.387726 | 4_2:-13385550 | None:intergenic |
| TCCGACAATTAAGGGATTGC+CGG | 0.389648 | 4_2:+13384880 | Msa0590020:CDS |
| AATATTCCTCCGACAATTAA+GGG | 0.395193 | 4_2:+13384872 | Msa0590020:CDS |
| TTAAAGAAGGGAACAATGAT+TGG | 0.395214 | 4_2:+13384951 | Msa0590020:CDS |
| CTTTGCTCCTTGTCCTTCAT+CGG | 0.398400 | 4_2:-13384717 | None:intergenic |
| GGATTGCCGGAGGGGTTCTC+CGG | 0.431051 | 4_2:+13384893 | Msa0590020:CDS |
| ACGGTATAAGCGGACTTTCT+GGG | 0.437141 | 4_2:-13384829 | None:intergenic |
| GGAGTTTAAGCTCTATGCCT+TGG | 0.440324 | 4_2:+13385024 | Msa0590020:CDS |
| GAGATGGGTGGTGAGTATGC+TGG | 0.451941 | 4_2:+13384926 | Msa0590020:CDS |
| GAATTAATTGCAGGTGACTA+AGG | 0.454093 | 4_2:+13385512 | Msa0590020:intron |
| GGTTGCCTACACATGGTCAT+AGG | 0.464896 | 4_2:+13384999 | Msa0590020:CDS |
| CCTTCATCGGTGAATTGTCT+TGG | 0.471085 | 4_2:-13384704 | None:intergenic |
| ATAAGACAAATCTAGTGTAA+AGG | 0.473096 | 4_2:-13385706 | None:intergenic |
| AAAATCTCTTGCACTTGTTG+TGG | 0.474474 | 4_2:+13384787 | Msa0590020:CDS |
| AGATGGGTGGTGAGTATGCT+GGG | 0.474728 | 4_2:+13384927 | Msa0590020:CDS |
| TCCGGCAATCCCTTAATTGT+CGG | 0.476702 | 4_2:-13384881 | None:intergenic |
| CCAAGACAATTCACCGATGA+AGG | 0.486370 | 4_2:+13384704 | Msa0590020:CDS |
| GCCAAGGAAGGGCACGTGCT+AGG | 0.486472 | 4_2:+13385549 | Msa0590020:CDS |
| GAGTATGCTGGGATTAAAGA+AGG | 0.496910 | 4_2:+13384938 | Msa0590020:CDS |
| ATAAGCGGACTTTCTGGGTC+AGG | 0.498188 | 4_2:-13384824 | None:intergenic |
| GGAGAAAACATTGGAGGCCA+AGG | 0.504623 | 4_2:+13385533 | Msa0590020:CDS |
| ATCTCTTGCACTTGTTGTGG+AGG | 0.520838 | 4_2:+13384790 | Msa0590020:CDS |
| CAGAAAGTCCGCTTATACCG+TGG | 0.527571 | 4_2:+13384831 | Msa0590020:CDS |
| CTCCGGAAAAGAAGAGGAGA+TGG | 0.540842 | 4_2:+13384910 | Msa0590020:CDS |
| CAATTAAGGGATTGCCGGAG+GGG | 0.541055 | 4_2:+13384885 | Msa0590020:CDS |
| GCTTATACCGTGGACATGCT+GGG | 0.546588 | 4_2:+13384841 | Msa0590020:CDS |
| AACAACAATATGGCTAGTGA+TGG | 0.549492 | 4_2:+13384629 | Msa0590020:exon |
| ACATATCACCACCATTGGAA+TGG | 0.559482 | 4_2:+13384744 | Msa0590020:CDS |
| AACCTGGTTGGCGTGGTCCG+AGG | 0.559829 | 4_2:+13384978 | Msa0590020:CDS |
| AACCTCGGACCACGCCAACC+AGG | 0.567436 | 4_2:-13384980 | None:intergenic |
| ACCGTGGACATGCTGGGTCG+TGG | 0.570804 | 4_2:+13384847 | Msa0590020:CDS |
| AAAACATTGGAGGCCAAGGA+AGG | 0.572417 | 4_2:+13385537 | Msa0590020:CDS |
| ACAATTAAGGGATTGCCGGA+GGG | 0.581121 | 4_2:+13384884 | Msa0590020:CDS |
| GCCTACACATGGTCATAGGT+TGG | 0.588655 | 4_2:+13385003 | Msa0590020:CDS |
| ATGATTGGAAACAACCTGGT+TGG | 0.593613 | 4_2:+13384966 | Msa0590020:CDS |
| CAGATGAAGTTCATCATCCA+AGG | 0.593869 | 4_2:-13385041 | None:intergenic |
| GGTCCGAGGTTGCCTACACA+TGG | 0.594491 | 4_2:+13384992 | Msa0590020:CDS |
| TTGTTTCTTTGTGATGATGG+TGG | 0.596105 | 4_2:-13384588 | None:intergenic |
| GACAATTAAGGGATTGCCGG+AGG | 0.600990 | 4_2:+13384883 | Msa0590020:CDS |
| GGGGTTCTCCGGAAAAGAAG+AGG | 0.603224 | 4_2:+13384904 | Msa0590020:CDS |
| TGGAAGTGAAGTGTTCAAGT+TGG | 0.611451 | 4_2:+13384649 | Msa0590020:CDS |
| GACTAAGGAGAAAACATTGG+AGG | 0.613416 | 4_2:+13385527 | Msa0590020:CDS |
| CAATTCACCGATGAAGGACA+AGG | 0.614163 | 4_2:+13384710 | Msa0590020:CDS |
| TGACCATGTGTAGGCAACCT+CGG | 0.615320 | 4_2:-13384995 | None:intergenic |
| ACCACGACCCAGCATGTCCA+CGG | 0.618296 | 4_2:-13384848 | None:intergenic |
| CAGCATGTCCACGGTATAAG+CGG | 0.625674 | 4_2:-13384839 | None:intergenic |
| TTGGATGATGAACTTCATCT+GGG | 0.626681 | 4_2:+13385043 | Msa0590020:CDS |
| TCCGGAAAAGAAGAGGAGAT+GGG | 0.627075 | 4_2:+13384911 | Msa0590020:CDS |
| GGTGACTAAGGAGAAAACAT+TGG | 0.627642 | 4_2:+13385524 | Msa0590020:intron |
| GGTATGTTGTACCATTCCAA+TGG | 0.628439 | 4_2:-13384755 | None:intergenic |
| GAATGGTACAACATACCAGA+GGG | 0.631694 | 4_2:+13384761 | Msa0590020:CDS |
| AAACATTGGAGGCCAAGGAA+GGG | 0.635260 | 4_2:+13385538 | Msa0590020:CDS |
| TGGAAACAACCTGGTTGGCG+TGG | 0.635575 | 4_2:+13384971 | Msa0590020:CDS |
| GGCAATCCCTTAATTGTCGG+AGG | 0.637599 | 4_2:-13384878 | None:intergenic |
| AACAATGATTGGAAACAACC+TGG | 0.638702 | 4_2:+13384962 | Msa0590020:CDS |
| AGTATGCTGGGATTAAAGAA+GGG | 0.646256 | 4_2:+13384939 | Msa0590020:CDS |
| ATGTTGTACCATTCCAATGG+TGG | 0.671854 | 4_2:-13384752 | None:intergenic |
| GGAAAAGAAGAGGAGATGGG+TGG | 0.683952 | 4_2:+13384914 | Msa0590020:CDS |
| TCACCAGCAATAGCAAACGA+AGG | 0.704482 | 4_2:+13384674 | Msa0590020:CDS |
| TCCAACCTATGACCATGTGT+AGG | 0.705834 | 4_2:-13385004 | None:intergenic |
| GGAATGGTACAACATACCAG+AGG | 0.732665 | 4_2:+13384760 | Msa0590020:CDS |
| AATGGTACAACATACCAGAG+GGG | 0.810028 | 4_2:+13384762 | Msa0590020:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAAAAAATAACAATGAAAT+TGG | + | chr4_2:13385202-13385221 | Msa0590020:intron | 10.0% |
| !! | ATAAAAAATAACAATGAAAT+TGG | + | chr4_2:13385202-13385221 | Msa0590020:intron | 10.0% |
| !!! | TTTTTTTCTCTTCTTTAATT+TGG | + | chr4_2:13385488-13385507 | Msa0590020:intron | 15.0% |
| !!! | TTTTTTTCTCTTCTTTAATT+TGG | + | chr4_2:13385488-13385507 | Msa0590020:intron | 15.0% |
| !! | TTTGTCTATCCAAATTAATA+CGG | - | chr4_2:13385362-13385381 | None:intergenic | 20.0% |
| !! | CTTATTTATAAAAATGCATC+CGG | + | chr4_2:13385387-13385406 | Msa0590020:intron | 20.0% |
| !! | CTAAAAAACATAATTCACTT+CGG | - | chr4_2:13385770-13385789 | None:intergenic | 20.0% |
| !!! | GAAGTGAATTATGTTTTTTA+GGG | + | chr4_2:13385769-13385788 | Msa0590020:three_prime_UTR | 20.0% |
| !! | TTTGTCTATCCAAATTAATA+CGG | - | chr4_2:13385362-13385381 | None:intergenic | 20.0% |
| !! | CTTATTTATAAAAATGCATC+CGG | + | chr4_2:13385387-13385406 | Msa0590020:intron | 20.0% |
| !! | CTAAAAAACATAATTCACTT+CGG | - | chr4_2:13385770-13385789 | None:intergenic | 20.0% |
| !!! | GAAGTGAATTATGTTTTTTA+GGG | + | chr4_2:13385769-13385788 | Msa0590020:three_prime_UTR | 20.0% |
| ! | ACTCAAGAAAAACAACAATA+TGG | + | chr4_2:13384619-13384638 | Msa0590020:exon | 25.0% |
| ! | TTGTCTATCCAAATTAATAC+GGG | - | chr4_2:13385361-13385380 | None:intergenic | 25.0% |
| !!! | TAGATTAACTTGTTTGAAAG+TGG | + | chr4_2:13385461-13385480 | Msa0590020:intron | 25.0% |
| !! | TAATTTGGTGAATTAATTGC+AGG | + | chr4_2:13385503-13385522 | Msa0590020:intron | 25.0% |
| ! | TAAGACAAATCTAGTGTAAA+GGG | - | chr4_2:13385708-13385727 | None:intergenic | 25.0% |
| ! | ATAAGACAAATCTAGTGTAA+AGG | - | chr4_2:13385709-13385728 | None:intergenic | 25.0% |
| !!! | CGAAGTGAATTATGTTTTTT+AGG | + | chr4_2:13385768-13385787 | Msa0590020:three_prime_UTR | 25.0% |
| ! | ACTCAAGAAAAACAACAATA+TGG | + | chr4_2:13384619-13384638 | Msa0590020:exon | 25.0% |
| ! | TTGTCTATCCAAATTAATAC+GGG | - | chr4_2:13385361-13385380 | None:intergenic | 25.0% |
| !!! | TAGATTAACTTGTTTGAAAG+TGG | + | chr4_2:13385461-13385480 | Msa0590020:intron | 25.0% |
| !! | TAATTTGGTGAATTAATTGC+AGG | + | chr4_2:13385503-13385522 | Msa0590020:intron | 25.0% |
| ! | TAAGACAAATCTAGTGTAAA+GGG | - | chr4_2:13385708-13385727 | None:intergenic | 25.0% |
| ! | ATAAGACAAATCTAGTGTAA+AGG | - | chr4_2:13385709-13385728 | None:intergenic | 25.0% |
| !!! | CGAAGTGAATTATGTTTTTT+AGG | + | chr4_2:13385768-13385787 | Msa0590020:three_prime_UTR | 25.0% |
| ! | TTCTTGTTTCTTTGTGATGA+TGG | - | chr4_2:13384594-13384613 | None:intergenic | 30.0% |
| AATATTCCTCCGACAATTAA+GGG | + | chr4_2:13384872-13384891 | Msa0590020:CDS | 30.0% | |
| TTAAAGAAGGGAACAATGAT+TGG | + | chr4_2:13384951-13384970 | Msa0590020:CDS | 30.0% | |
| TAAACTAAACCCATTTGAGT+TGG | + | chr4_2:13385281-13385300 | Msa0590020:intron | 30.0% | |
| AATTCTCTCCCGTATTAATT+TGG | + | chr4_2:13385350-13385369 | Msa0590020:intron | 30.0% | |
| TAGTCTATACAAATTGACAC+CGG | - | chr4_2:13385409-13385428 | None:intergenic | 30.0% | |
| TTCTCTCATTGGATTCAAAA+TGG | - | chr4_2:13385671-13385690 | None:intergenic | 30.0% | |
| ! | TTCTTGTTTCTTTGTGATGA+TGG | - | chr4_2:13384594-13384613 | None:intergenic | 30.0% |
| AATATTCCTCCGACAATTAA+GGG | + | chr4_2:13384872-13384891 | Msa0590020:CDS | 30.0% | |
| TTAAAGAAGGGAACAATGAT+TGG | + | chr4_2:13384951-13384970 | Msa0590020:CDS | 30.0% | |
| TAAACTAAACCCATTTGAGT+TGG | + | chr4_2:13385281-13385300 | Msa0590020:intron | 30.0% | |
| AATTCTCTCCCGTATTAATT+TGG | + | chr4_2:13385350-13385369 | Msa0590020:intron | 30.0% | |
| TAGTCTATACAAATTGACAC+CGG | - | chr4_2:13385409-13385428 | None:intergenic | 30.0% | |
| TTCTCTCATTGGATTCAAAA+TGG | - | chr4_2:13385671-13385690 | None:intergenic | 30.0% | |
| !! | TTGTTTCTTTGTGATGATGG+TGG | - | chr4_2:13384591-13384610 | None:intergenic | 35.0% |
| AACAACAATATGGCTAGTGA+TGG | + | chr4_2:13384629-13384648 | Msa0590020:exon | 35.0% | |
| GAAAAACATATCACCACCAT+TGG | + | chr4_2:13384739-13384758 | Msa0590020:CDS | 35.0% | |
| ! | AAAATCTCTTGCACTTGTTG+TGG | + | chr4_2:13384787-13384806 | Msa0590020:CDS | 35.0% |
| GAATATTCCTCCGACAATTA+AGG | + | chr4_2:13384871-13384890 | Msa0590020:CDS | 35.0% | |
| AGTATGCTGGGATTAAAGAA+GGG | + | chr4_2:13384939-13384958 | Msa0590020:CDS | 35.0% | |
| AACAATGATTGGAAACAACC+TGG | + | chr4_2:13384962-13384981 | Msa0590020:CDS | 35.0% | |
| TTGGATGATGAACTTCATCT+GGG | + | chr4_2:13385043-13385062 | Msa0590020:CDS | 35.0% | |
| TGAACTTCATCTGGGTAATA+AGG | + | chr4_2:13385051-13385070 | Msa0590020:CDS | 35.0% | |
| !! | TAAACCCATTTGAGTTGGTT+TGG | + | chr4_2:13385286-13385305 | Msa0590020:intron | 35.0% |
| GAATTAATTGCAGGTGACTA+AGG | + | chr4_2:13385512-13385531 | Msa0590020:intron | 35.0% | |
| AAATGAAGCTCTTCTCTCAT+TGG | - | chr4_2:13385682-13385701 | None:intergenic | 35.0% | |
| !! | TTGTTTCTTTGTGATGATGG+TGG | - | chr4_2:13384591-13384610 | None:intergenic | 35.0% |
| AACAACAATATGGCTAGTGA+TGG | + | chr4_2:13384629-13384648 | Msa0590020:exon | 35.0% | |
| GAAAAACATATCACCACCAT+TGG | + | chr4_2:13384739-13384758 | Msa0590020:CDS | 35.0% | |
| ! | AAAATCTCTTGCACTTGTTG+TGG | + | chr4_2:13384787-13384806 | Msa0590020:CDS | 35.0% |
| GAATATTCCTCCGACAATTA+AGG | + | chr4_2:13384871-13384890 | Msa0590020:CDS | 35.0% | |
| AGTATGCTGGGATTAAAGAA+GGG | + | chr4_2:13384939-13384958 | Msa0590020:CDS | 35.0% | |
| AACAATGATTGGAAACAACC+TGG | + | chr4_2:13384962-13384981 | Msa0590020:CDS | 35.0% | |
| TTGGATGATGAACTTCATCT+GGG | + | chr4_2:13385043-13385062 | Msa0590020:CDS | 35.0% | |
| TGAACTTCATCTGGGTAATA+AGG | + | chr4_2:13385051-13385070 | Msa0590020:CDS | 35.0% | |
| !! | TAAACCCATTTGAGTTGGTT+TGG | + | chr4_2:13385286-13385305 | Msa0590020:intron | 35.0% |
| GAATTAATTGCAGGTGACTA+AGG | + | chr4_2:13385512-13385531 | Msa0590020:intron | 35.0% | |
| AAATGAAGCTCTTCTCTCAT+TGG | - | chr4_2:13385682-13385701 | None:intergenic | 35.0% | |
| ! | TGGAAGTGAAGTGTTCAAGT+TGG | + | chr4_2:13384649-13384668 | Msa0590020:CDS | 40.0% |
| !! | TTTCCTTCGTTTGCTATTGC+TGG | - | chr4_2:13384680-13384699 | None:intergenic | 40.0% |
| ACATATCACCACCATTGGAA+TGG | + | chr4_2:13384744-13384763 | Msa0590020:CDS | 40.0% | |
| ATGTTGTACCATTCCAATGG+TGG | - | chr4_2:13384755-13384774 | None:intergenic | 40.0% | |
| GGTATGTTGTACCATTCCAA+TGG | - | chr4_2:13384758-13384777 | None:intergenic | 40.0% | |
| GAATGGTACAACATACCAGA+GGG | + | chr4_2:13384761-13384780 | Msa0590020:CDS | 40.0% | |
| AATGGTACAACATACCAGAG+GGG | + | chr4_2:13384762-13384781 | Msa0590020:CDS | 40.0% | |
| GAGTATGCTGGGATTAAAGA+AGG | + | chr4_2:13384938-13384957 | Msa0590020:CDS | 40.0% | |
| ATGATTGGAAACAACCTGGT+TGG | + | chr4_2:13384966-13384985 | Msa0590020:CDS | 40.0% | |
| CAGATGAAGTTCATCATCCA+AGG | - | chr4_2:13385044-13385063 | None:intergenic | 40.0% | |
| CTTGGATGATGAACTTCATC+TGG | + | chr4_2:13385042-13385061 | Msa0590020:CDS | 40.0% | |
| ACCACCAAACCAACTCAAAT+GGG | - | chr4_2:13385293-13385312 | None:intergenic | 40.0% | |
| GGTGACTAAGGAGAAAACAT+TGG | + | chr4_2:13385524-13385543 | Msa0590020:intron | 40.0% | |
| GACTAAGGAGAAAACATTGG+AGG | + | chr4_2:13385527-13385546 | Msa0590020:CDS | 40.0% | |
| ! | TGGAAGTGAAGTGTTCAAGT+TGG | + | chr4_2:13384649-13384668 | Msa0590020:CDS | 40.0% |
| !! | TTTCCTTCGTTTGCTATTGC+TGG | - | chr4_2:13384680-13384699 | None:intergenic | 40.0% |
| ACATATCACCACCATTGGAA+TGG | + | chr4_2:13384744-13384763 | Msa0590020:CDS | 40.0% | |
| ATGTTGTACCATTCCAATGG+TGG | - | chr4_2:13384755-13384774 | None:intergenic | 40.0% | |
| GGTATGTTGTACCATTCCAA+TGG | - | chr4_2:13384758-13384777 | None:intergenic | 40.0% | |
| GAATGGTACAACATACCAGA+GGG | + | chr4_2:13384761-13384780 | Msa0590020:CDS | 40.0% | |
| AATGGTACAACATACCAGAG+GGG | + | chr4_2:13384762-13384781 | Msa0590020:CDS | 40.0% | |
| GAGTATGCTGGGATTAAAGA+AGG | + | chr4_2:13384938-13384957 | Msa0590020:CDS | 40.0% | |
| ATGATTGGAAACAACCTGGT+TGG | + | chr4_2:13384966-13384985 | Msa0590020:CDS | 40.0% | |
| CAGATGAAGTTCATCATCCA+AGG | - | chr4_2:13385044-13385063 | None:intergenic | 40.0% | |
| CTTGGATGATGAACTTCATC+TGG | + | chr4_2:13385042-13385061 | Msa0590020:CDS | 40.0% | |
| ACCACCAAACCAACTCAAAT+GGG | - | chr4_2:13385293-13385312 | None:intergenic | 40.0% | |
| GGTGACTAAGGAGAAAACAT+TGG | + | chr4_2:13385524-13385543 | Msa0590020:intron | 40.0% | |
| GACTAAGGAGAAAACATTGG+AGG | + | chr4_2:13385527-13385546 | Msa0590020:CDS | 40.0% | |
| TCACCAGCAATAGCAAACGA+AGG | + | chr4_2:13384674-13384693 | Msa0590020:CDS | 45.0% | |
| CCTTCATCGGTGAATTGTCT+TGG | - | chr4_2:13384707-13384726 | None:intergenic | 45.0% | |
| CCAAGACAATTCACCGATGA+AGG | + | chr4_2:13384704-13384723 | Msa0590020:CDS | 45.0% | |
| CAATTCACCGATGAAGGACA+AGG | + | chr4_2:13384710-13384729 | Msa0590020:CDS | 45.0% | |
| CTTTGCTCCTTGTCCTTCAT+CGG | - | chr4_2:13384720-13384739 | None:intergenic | 45.0% | |
| GGAATGGTACAACATACCAG+AGG | + | chr4_2:13384760-13384779 | Msa0590020:CDS | 45.0% | |
| !! | ATCTCTTGCACTTGTTGTGG+AGG | + | chr4_2:13384790-13384809 | Msa0590020:CDS | 45.0% |
| ! | ACGGTATAAGCGGACTTTCT+GGG | - | chr4_2:13384832-13384851 | None:intergenic | 45.0% |
| TCCGACAATTAAGGGATTGC+CGG | + | chr4_2:13384880-13384899 | Msa0590020:CDS | 45.0% | |
| TCCGGCAATCCCTTAATTGT+CGG | - | chr4_2:13384884-13384903 | None:intergenic | 45.0% | |
| ACAATTAAGGGATTGCCGGA+GGG | + | chr4_2:13384884-13384903 | Msa0590020:CDS | 45.0% | |
| TCCGGAAAAGAAGAGGAGAT+GGG | + | chr4_2:13384911-13384930 | Msa0590020:CDS | 45.0% | |
| ! | ACCCATCTCCTCTTCTTTTC+CGG | - | chr4_2:13384915-13384934 | None:intergenic | 45.0% |
| TCCAACCTATGACCATGTGT+AGG | - | chr4_2:13385007-13385026 | None:intergenic | 45.0% | |
| GGAGTTTAAGCTCTATGCCT+TGG | + | chr4_2:13385024-13385043 | Msa0590020:CDS | 45.0% | |
| !! | ACCCATTTGAGTTGGTTTGG+TGG | + | chr4_2:13385289-13385308 | Msa0590020:intron | 45.0% |
| CACCACCAAACCAACTCAAA+TGG | - | chr4_2:13385294-13385313 | None:intergenic | 45.0% | |
| AAAACATTGGAGGCCAAGGA+AGG | + | chr4_2:13385537-13385556 | Msa0590020:CDS | 45.0% | |
| AAACATTGGAGGCCAAGGAA+GGG | + | chr4_2:13385538-13385557 | Msa0590020:CDS | 45.0% | |
| !! | GATGGTGGTGTGTGATTTTG+CGG | - | chr4_2:13384576-13384595 | None:intergenic | 45.0% |
| TCACCAGCAATAGCAAACGA+AGG | + | chr4_2:13384674-13384693 | Msa0590020:CDS | 45.0% | |
| CCTTCATCGGTGAATTGTCT+TGG | - | chr4_2:13384707-13384726 | None:intergenic | 45.0% | |
| CCAAGACAATTCACCGATGA+AGG | + | chr4_2:13384704-13384723 | Msa0590020:CDS | 45.0% | |
| CAATTCACCGATGAAGGACA+AGG | + | chr4_2:13384710-13384729 | Msa0590020:CDS | 45.0% | |
| CTTTGCTCCTTGTCCTTCAT+CGG | - | chr4_2:13384720-13384739 | None:intergenic | 45.0% | |
| GGAATGGTACAACATACCAG+AGG | + | chr4_2:13384760-13384779 | Msa0590020:CDS | 45.0% | |
| !! | ATCTCTTGCACTTGTTGTGG+AGG | + | chr4_2:13384790-13384809 | Msa0590020:CDS | 45.0% |
| ! | ACGGTATAAGCGGACTTTCT+GGG | - | chr4_2:13384832-13384851 | None:intergenic | 45.0% |
| TCCGACAATTAAGGGATTGC+CGG | + | chr4_2:13384880-13384899 | Msa0590020:CDS | 45.0% | |
| TCCGGCAATCCCTTAATTGT+CGG | - | chr4_2:13384884-13384903 | None:intergenic | 45.0% | |
| ACAATTAAGGGATTGCCGGA+GGG | + | chr4_2:13384884-13384903 | Msa0590020:CDS | 45.0% | |
| TCCGGAAAAGAAGAGGAGAT+GGG | + | chr4_2:13384911-13384930 | Msa0590020:CDS | 45.0% | |
| ! | ACCCATCTCCTCTTCTTTTC+CGG | - | chr4_2:13384915-13384934 | None:intergenic | 45.0% |
| TCCAACCTATGACCATGTGT+AGG | - | chr4_2:13385007-13385026 | None:intergenic | 45.0% | |
| GGAGTTTAAGCTCTATGCCT+TGG | + | chr4_2:13385024-13385043 | Msa0590020:CDS | 45.0% | |
| !! | ACCCATTTGAGTTGGTTTGG+TGG | + | chr4_2:13385289-13385308 | Msa0590020:intron | 45.0% |
| CACCACCAAACCAACTCAAA+TGG | - | chr4_2:13385294-13385313 | None:intergenic | 45.0% | |
| AAAACATTGGAGGCCAAGGA+AGG | + | chr4_2:13385537-13385556 | Msa0590020:CDS | 45.0% | |
| AAACATTGGAGGCCAAGGAA+GGG | + | chr4_2:13385538-13385557 | Msa0590020:CDS | 45.0% | |
| ! | GCAAGAGATTTTGTCCCCTC+TGG | - | chr4_2:13384779-13384798 | None:intergenic | 50.0% |
| ! | ATAAGCGGACTTTCTGGGTC+AGG | - | chr4_2:13384827-13384846 | None:intergenic | 50.0% |
| ! | CACGGTATAAGCGGACTTTC+TGG | - | chr4_2:13384833-13384852 | None:intergenic | 50.0% |
| CAGAAAGTCCGCTTATACCG+TGG | + | chr4_2:13384831-13384850 | Msa0590020:CDS | 50.0% | |
| CAGCATGTCCACGGTATAAG+CGG | - | chr4_2:13384842-13384861 | None:intergenic | 50.0% | |
| GCTTATACCGTGGACATGCT+GGG | + | chr4_2:13384841-13384860 | Msa0590020:CDS | 50.0% | |
| GGCAATCCCTTAATTGTCGG+AGG | - | chr4_2:13384881-13384900 | None:intergenic | 50.0% | |
| GACAATTAAGGGATTGCCGG+AGG | + | chr4_2:13384883-13384902 | Msa0590020:CDS | 50.0% | |
| CAATTAAGGGATTGCCGGAG+GGG | + | chr4_2:13384885-13384904 | Msa0590020:CDS | 50.0% | |
| CTCCGGAAAAGAAGAGGAGA+TGG | + | chr4_2:13384910-13384929 | Msa0590020:CDS | 50.0% | |
| GGAAAAGAAGAGGAGATGGG+TGG | + | chr4_2:13384914-13384933 | Msa0590020:CDS | 50.0% | |
| AGATGGGTGGTGAGTATGCT+GGG | + | chr4_2:13384927-13384946 | Msa0590020:CDS | 50.0% | |
| TGACCATGTGTAGGCAACCT+CGG | - | chr4_2:13384998-13385017 | None:intergenic | 50.0% | |
| GGTTGCCTACACATGGTCAT+AGG | + | chr4_2:13384999-13385018 | Msa0590020:CDS | 50.0% | |
| GCCTACACATGGTCATAGGT+TGG | + | chr4_2:13385003-13385022 | Msa0590020:CDS | 50.0% | |
| GGAGAAAACATTGGAGGCCA+AGG | + | chr4_2:13385533-13385552 | Msa0590020:CDS | 50.0% | |
| ! | GCAAGAGATTTTGTCCCCTC+TGG | - | chr4_2:13384779-13384798 | None:intergenic | 50.0% |
| ! | ATAAGCGGACTTTCTGGGTC+AGG | - | chr4_2:13384827-13384846 | None:intergenic | 50.0% |
| ! | CACGGTATAAGCGGACTTTC+TGG | - | chr4_2:13384833-13384852 | None:intergenic | 50.0% |
| CAGAAAGTCCGCTTATACCG+TGG | + | chr4_2:13384831-13384850 | Msa0590020:CDS | 50.0% | |
| CAGCATGTCCACGGTATAAG+CGG | - | chr4_2:13384842-13384861 | None:intergenic | 50.0% | |
| GCTTATACCGTGGACATGCT+GGG | + | chr4_2:13384841-13384860 | Msa0590020:CDS | 50.0% | |
| GGCAATCCCTTAATTGTCGG+AGG | - | chr4_2:13384881-13384900 | None:intergenic | 50.0% | |
| GACAATTAAGGGATTGCCGG+AGG | + | chr4_2:13384883-13384902 | Msa0590020:CDS | 50.0% | |
| CAATTAAGGGATTGCCGGAG+GGG | + | chr4_2:13384885-13384904 | Msa0590020:CDS | 50.0% | |
| CTCCGGAAAAGAAGAGGAGA+TGG | + | chr4_2:13384910-13384929 | Msa0590020:CDS | 50.0% | |
| GGAAAAGAAGAGGAGATGGG+TGG | + | chr4_2:13384914-13384933 | Msa0590020:CDS | 50.0% | |
| AGATGGGTGGTGAGTATGCT+GGG | + | chr4_2:13384927-13384946 | Msa0590020:CDS | 50.0% | |
| TGACCATGTGTAGGCAACCT+CGG | - | chr4_2:13384998-13385017 | None:intergenic | 50.0% | |
| GGTTGCCTACACATGGTCAT+AGG | + | chr4_2:13384999-13385018 | Msa0590020:CDS | 50.0% | |
| GCCTACACATGGTCATAGGT+TGG | + | chr4_2:13385003-13385022 | Msa0590020:CDS | 50.0% | |
| GGAGAAAACATTGGAGGCCA+AGG | + | chr4_2:13385533-13385552 | Msa0590020:CDS | 50.0% | |
| CGCTTATACCGTGGACATGC+TGG | + | chr4_2:13384840-13384859 | Msa0590020:CDS | 55.0% | |
| ! | TCTTTTCCGGAGAACCCCTC+CGG | - | chr4_2:13384902-13384921 | None:intergenic | 55.0% |
| GGGGTTCTCCGGAAAAGAAG+AGG | + | chr4_2:13384904-13384923 | Msa0590020:CDS | 55.0% | |
| GAGATGGGTGGTGAGTATGC+TGG | + | chr4_2:13384926-13384945 | Msa0590020:CDS | 55.0% | |
| TGGAAACAACCTGGTTGGCG+TGG | + | chr4_2:13384971-13384990 | Msa0590020:CDS | 55.0% | |
| CGCTTATACCGTGGACATGC+TGG | + | chr4_2:13384840-13384859 | Msa0590020:CDS | 55.0% | |
| ! | TCTTTTCCGGAGAACCCCTC+CGG | - | chr4_2:13384902-13384921 | None:intergenic | 55.0% |
| GGGGTTCTCCGGAAAAGAAG+AGG | + | chr4_2:13384904-13384923 | Msa0590020:CDS | 55.0% | |
| GAGATGGGTGGTGAGTATGC+TGG | + | chr4_2:13384926-13384945 | Msa0590020:CDS | 55.0% | |
| TGGAAACAACCTGGTTGGCG+TGG | + | chr4_2:13384971-13384990 | Msa0590020:CDS | 55.0% | |
| ACCACGACCCAGCATGTCCA+CGG | - | chr4_2:13384851-13384870 | None:intergenic | 60.0% | |
| GGTCCGAGGTTGCCTACACA+TGG | + | chr4_2:13384992-13385011 | Msa0590020:CDS | 60.0% | |
| TCCTAGCACGTGCCCTTCCT+TGG | - | chr4_2:13385553-13385572 | None:intergenic | 60.0% | |
| ACCACGACCCAGCATGTCCA+CGG | - | chr4_2:13384851-13384870 | None:intergenic | 60.0% | |
| GGTCCGAGGTTGCCTACACA+TGG | + | chr4_2:13384992-13385011 | Msa0590020:CDS | 60.0% | |
| TCCTAGCACGTGCCCTTCCT+TGG | - | chr4_2:13385553-13385572 | None:intergenic | 60.0% | |
| ACCGTGGACATGCTGGGTCG+TGG | + | chr4_2:13384847-13384866 | Msa0590020:CDS | 65.0% | |
| GGATTGCCGGAGGGGTTCTC+CGG | + | chr4_2:13384893-13384912 | Msa0590020:CDS | 65.0% | |
| AACCTGGTTGGCGTGGTCCG+AGG | + | chr4_2:13384978-13384997 | Msa0590020:CDS | 65.0% | |
| AACCTCGGACCACGCCAACC+AGG | - | chr4_2:13384983-13385002 | None:intergenic | 65.0% | |
| ! | GCCAAGGAAGGGCACGTGCT+AGG | + | chr4_2:13385549-13385568 | Msa0590020:CDS | 65.0% |
| ACCGTGGACATGCTGGGTCG+TGG | + | chr4_2:13384847-13384866 | Msa0590020:CDS | 65.0% | |
| GGATTGCCGGAGGGGTTCTC+CGG | + | chr4_2:13384893-13384912 | Msa0590020:CDS | 65.0% | |
| AACCTGGTTGGCGTGGTCCG+AGG | + | chr4_2:13384978-13384997 | Msa0590020:CDS | 65.0% | |
| AACCTCGGACCACGCCAACC+AGG | - | chr4_2:13384983-13385002 | None:intergenic | 65.0% | |
| ! | GCCAAGGAAGGGCACGTGCT+AGG | + | chr4_2:13385549-13385568 | Msa0590020:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 13384574 | 13385802 | 13384574 | ID=Msa0590020;Name=Msa0590020 |
| chr4_2 | mRNA | 13384574 | 13385802 | 13384574 | ID=Msa0590020-mRNA-1;Parent=Msa0590020;Name=Msa0590020-mRNA-1;_AED=0.18;_eAED=0.18;_QI=64|1|1|1|1|1|2|203|169 |
| chr4_2 | exon | 13384574 | 13385072 | 13384574 | ID=Msa0590020-mRNA-1:exon:3908;Parent=Msa0590020-mRNA-1 |
| chr4_2 | exon | 13385525 | 13385802 | 13385525 | ID=Msa0590020-mRNA-1:exon:3909;Parent=Msa0590020-mRNA-1 |
| chr4_2 | five_prime_UTR | 13384574 | 13384637 | 13384574 | ID=Msa0590020-mRNA-1:five_prime_utr;Parent=Msa0590020-mRNA-1 |
| chr4_2 | CDS | 13384638 | 13385072 | 13384638 | ID=Msa0590020-mRNA-1:cds;Parent=Msa0590020-mRNA-1 |
| chr4_2 | CDS | 13385525 | 13385599 | 13385525 | ID=Msa0590020-mRNA-1:cds;Parent=Msa0590020-mRNA-1 |
| chr4_2 | three_prime_UTR | 13385600 | 13385802 | 13385600 | ID=Msa0590020-mRNA-1:three_prime_utr;Parent=Msa0590020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
