Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631670 | XP_013454988.1 | 95.957 | 371 | 12 | 2 | 1 | 371 | 1 | 368 | 0.0 | 709 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631670 | sp|Q58DG1|MYG1_BOVIN | 51.026 | 341 | 155 | 6 | 47 | 380 | 31 | 366 | 5.88e-108 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0631670 | Msa0677290 | 0.812155 | 4.888801e-51 | -8.615850e-47 |
| Msa0631670 | Msa1043690 | 0.809527 | 1.810468e-50 | -8.615850e-47 |
| Msa0631670 | Msa1104140 | 0.803426 | 3.505198e-49 | -8.615850e-47 |
| Msa0631670 | Msa1201650 | 0.825676 | 4.116667e-54 | -8.615850e-47 |
| Msa0631670 | Msa1254610 | 0.807163 | 5.779586e-50 | -8.615850e-47 |
| Msa0631670 | Msa1374120 | 0.803869 | 2.837837e-49 | -8.615850e-47 |
| Msa0535360 | Msa0631670 | 0.920786 | 8.223061e-88 | -8.615850e-47 |
| Msa0576940 | Msa0631670 | 0.801517 | 8.673914e-49 | -8.615850e-47 |
| Msa0591470 | Msa0631670 | 0.938444 | 6.661641e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631670 | MtrunA17_Chr4g0009411 | 95.957 | 371 | 12 | 2 | 1 | 371 | 1 | 368 | 0.0 | 709 |
| Msa0631670 | MtrunA17_Chr3g0127371 | 64.583 | 336 | 117 | 1 | 46 | 381 | 11 | 344 | 3.79e-168 | 473 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0631670 | AT5G41970.1 | 68.490 | 384 | 108 | 4 | 1 | 382 | 1 | 373 | 0.0 | 554 |
| Msa0631670 | AT3G49320.1 | 70.695 | 331 | 97 | 0 | 50 | 380 | 22 | 352 | 0.0 | 508 |
| Msa0631670 | AT3G49320.2 | 67.660 | 235 | 76 | 0 | 50 | 284 | 22 | 256 | 6.52e-119 | 345 |
Find 104 sgRNAs with CRISPR-Local
Find 331 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTTCACTAATGTATTA+TGG | 0.184664 | 4_3:+14855175 | Msa0631670:three_prime_UTR |
| TGAGTATTATTCACATATTT+TGG | 0.193287 | 4_3:-14852980 | None:intergenic |
| ACTTGCTGGCAGTGAGTTTC+TGG | 0.203766 | 4_3:+14853096 | Msa0631670:CDS |
| AAACCTCCTCAAATCCTTTC+TGG | 0.205905 | 4_3:-14851365 | None:intergenic |
| AAATGTCCATTACGTATATT+TGG | 0.212868 | 4_3:+14852111 | Msa0631670:CDS |
| AATATACGTAATGGACATTT+TGG | 0.220571 | 4_3:-14852108 | None:intergenic |
| TGCCCACATCATATGACTTT+TGG | 0.245472 | 4_3:-14850017 | None:intergenic |
| CCAAAGCACCTTCAAAAGTT+TGG | 0.266550 | 4_3:-14854887 | None:intergenic |
| CAGTGCTGGTCTTGTTTATA+AGG | 0.270739 | 4_3:+14851416 | Msa0631670:CDS |
| ACGTATATTTGGCTGTTTAC+AGG | 0.273800 | 4_3:+14852122 | Msa0631670:CDS |
| GAAATGTTCTGCAAAATTAA+TGG | 0.289764 | 4_3:-14854971 | None:intergenic |
| GTGGAAATGGAATTGGAATT+TGG | 0.290185 | 4_3:-14850074 | None:intergenic |
| CTTCACAGTGGCGAGGTTTA+CGG | 0.296003 | 4_3:+14854790 | Msa0631670:CDS |
| GTCCATATGAGTGGATTTAT+TGG | 0.303964 | 4_3:+14854858 | Msa0631670:CDS |
| CTTGATGCTGTTCTTGATGT+TGG | 0.303993 | 4_3:+14851303 | Msa0631670:CDS |
| AGACAAACCGTTGATCCTTC+TGG | 0.314250 | 4_3:+14853318 | Msa0631670:CDS |
| TCAAAGGAATCTGGCATTCC+TGG | 0.319752 | 4_3:+14854825 | Msa0631670:CDS |
| TTCACAGTGGCGAGGTTTAC+GGG | 0.324078 | 4_3:+14854791 | Msa0631670:CDS |
| CATCGGGCCATGGCACTTGC+TGG | 0.339183 | 4_3:+14853082 | Msa0631670:CDS |
| TGGGGAAGTGGAAATGGAAT+TGG | 0.371440 | 4_3:-14850081 | None:intergenic |
| GAAATGCTTCTGCTTGTACT+TGG | 0.384832 | 4_3:-14850101 | None:intergenic |
| AAGAGTAGGAAGGTTTAATC+TGG | 0.393648 | 4_3:+14853012 | Msa0631670:CDS |
| GGCTGTTTACAGGAGCTTCA+TGG | 0.397194 | 4_3:+14852132 | Msa0631670:CDS |
| TCCATCACAATTGACTTTGC+TGG | 0.397434 | 4_3:-14853282 | None:intergenic |
| TCCACTAAGTTGAGCAGTGC+TGG | 0.401728 | 4_3:+14851402 | Msa0631670:CDS |
| ACCAGCACTGCTCAACTTAG+TGG | 0.402993 | 4_3:-14851403 | None:intergenic |
| TCTTTATGATAAAATGTCAT+TGG | 0.409967 | 4_3:+14855202 | Msa0631670:three_prime_UTR |
| CATTAAAGAGGCAGATGGTT+GGG | 0.418023 | 4_3:+14855014 | Msa0631670:three_prime_UTR |
| GATTATAGCTAATGAACTTA+AGG | 0.428163 | 4_3:+14852072 | Msa0631670:CDS |
| CGCCAATAAATCCACTCATA+TGG | 0.432741 | 4_3:-14854860 | None:intergenic |
| ATGCTGTTCTTGATGTTGGA+GGG | 0.432940 | 4_3:+14851307 | Msa0631670:CDS |
| CGTTCGCACTCGTGACCCTC+AGG | 0.444103 | 4_3:+14850300 | Msa0631670:CDS |
| TCTTTCTCAGATGACTGATC+GGG | 0.445349 | 4_3:-14853046 | None:intergenic |
| CTTCACTTATTTGAGCTTGA+GGG | 0.445870 | 4_3:+14854197 | Msa0631670:CDS |
| TAGGAAGGTTTAATCTGGAT+TGG | 0.446800 | 4_3:+14853017 | Msa0631670:CDS |
| TGTACTTGGGGAAGTGGAAA+TGG | 0.450852 | 4_3:-14850087 | None:intergenic |
| AAATGCTTCTGCTTGTACTT+GGG | 0.452435 | 4_3:-14850100 | None:intergenic |
| TCGTACAGAACATATTTGAT+TGG | 0.452757 | 4_3:-14854239 | None:intergenic |
| GACGTACTGTCAAAGGAATC+TGG | 0.453062 | 4_3:+14854816 | Msa0631670:CDS |
| TTGAGAGACGCGTGAGAAGA+AGG | 0.455829 | 4_3:-14850184 | None:intergenic |
| TTCTTTCTCAGATGACTGAT+CGG | 0.468555 | 4_3:-14853047 | None:intergenic |
| AAGCAAACAGTGGCGAGTGC+AGG | 0.469480 | 4_3:+14854722 | Msa0631670:CDS |
| CTTCCGGCTCTCGAATCTAT+CGG | 0.470405 | 4_3:-14854760 | None:intergenic |
| TTCCATTGTGATGAAGCTCT+TGG | 0.479009 | 4_3:+14850232 | Msa0631670:CDS |
| TTGATTGATTCCATTGTCTA+CGG | 0.487412 | 4_3:-14852939 | None:intergenic |
| TTGTAACAAGTCAAACACTA+TGG | 0.488476 | 4_3:+14854947 | Msa0631670:three_prime_UTR |
| GATGCTGTTCTTGATGTTGG+AGG | 0.499216 | 4_3:+14851306 | Msa0631670:CDS |
| GGTGATGATCATAACGATCT+CGG | 0.504124 | 4_3:-14851344 | None:intergenic |
| AAAACTAAAATTTCTCCAGA+AGG | 0.507002 | 4_3:-14853333 | None:intergenic |
| AAGAAAATGAAGCATTTCAT+CGG | 0.507024 | 4_3:+14853065 | Msa0631670:CDS |
| AGAAAATGAAGCATTTCATC+GGG | 0.507874 | 4_3:+14853066 | Msa0631670:CDS |
| TCTGCTTGTACTTGGGGAAG+TGG | 0.508698 | 4_3:-14850093 | None:intergenic |
| TTCCGGCTCTCGAATCTATC+GGG | 0.512998 | 4_3:-14854759 | None:intergenic |
| GCATTAAAGAGGCAGATGGT+TGG | 0.514641 | 4_3:+14855013 | Msa0631670:three_prime_UTR |
| AAACAGCCAAATATACGTAA+TGG | 0.515908 | 4_3:-14852117 | None:intergenic |
| TACAGAACATATTTGATTGG+TGG | 0.524993 | 4_3:-14854236 | None:intergenic |
| ACAATGGAAGCTACCATTGT+GGG | 0.525062 | 4_3:-14850218 | None:intergenic |
| TGTCTAACACTAAAACAGCT+AGG | 0.526457 | 4_3:+14850143 | Msa0631670:CDS |
| TGCTGTTCTTGATGTTGGAG+GGG | 0.529822 | 4_3:+14851308 | Msa0631670:CDS |
| GTCTAACACTAAAACAGCTA+GGG | 0.531100 | 4_3:+14850144 | Msa0631670:CDS |
| TCATCACCAGAAAGGATTTG+AGG | 0.532672 | 4_3:+14851359 | Msa0631670:CDS |
| TGTGATTCTGTAGGTGTTGG+AGG | 0.532949 | 4_3:+14851278 | Msa0631670:intron |
| AATCCAAAAGTCATATGATG+TGG | 0.534140 | 4_3:+14850014 | Msa0631670:exon |
| GCTTCACTTATTTGAGCTTG+AGG | 0.539094 | 4_3:+14854196 | Msa0631670:CDS |
| ACAGAACATATTTGATTGGT+GGG | 0.547994 | 4_3:-14854235 | None:intergenic |
| AACGGTTTGTCTAGCCGCAA+TGG | 0.551955 | 4_3:-14853307 | None:intergenic |
| CTCCCGATAGATTCGAGAGC+CGG | 0.553624 | 4_3:+14854757 | Msa0631670:CDS |
| CGTTATGATCATCACCAGAA+AGG | 0.554112 | 4_3:+14851351 | Msa0631670:CDS |
| AATGCTTCTGCTTGTACTTG+GGG | 0.555227 | 4_3:-14850099 | None:intergenic |
| ACTGTGAAGGTAGAGCCTTC+CGG | 0.555569 | 4_3:-14854776 | None:intergenic |
| TGCTTTGAAGATGTAGGCAA+AGG | 0.556037 | 4_3:+14854923 | Msa0631670:exon |
| ATTAAACCTTCCTACTCTTG+AGG | 0.556617 | 4_3:-14853008 | None:intergenic |
| CATATGAGTGGATTTATTGG+CGG | 0.560355 | 4_3:+14854861 | Msa0631670:CDS |
| ACGGGATGACGTACTGTCAA+AGG | 0.561567 | 4_3:+14854809 | Msa0631670:CDS |
| GTGATGATCATAACGATCTC+GGG | 0.561931 | 4_3:-14851343 | None:intergenic |
| TGAAGCATTTCATCGGGCCA+TGG | 0.565145 | 4_3:+14853072 | Msa0631670:CDS |
| GCAATTGATGCCGTAGACAA+TGG | 0.565550 | 4_3:+14852929 | Msa0631670:CDS |
| TGATCATAACGATCTCGGGC+AGG | 0.569953 | 4_3:-14851339 | None:intergenic |
| GATTGCATTAAAGAGGCAGA+TGG | 0.571152 | 4_3:+14855009 | Msa0631670:three_prime_UTR |
| TTCACTTATTTGAGCTTGAG+GGG | 0.571793 | 4_3:+14854198 | Msa0631670:CDS |
| TCACGCGTCTCTCAAGCGCG+TGG | 0.574662 | 4_3:+14850192 | Msa0631670:CDS |
| CGTAAACCTCGCCACTGTGA+AGG | 0.574929 | 4_3:-14854789 | None:intergenic |
| AAAAGCTGCTTTGAAGATGT+AGG | 0.585064 | 4_3:+14854917 | Msa0631670:CDS |
| ATTTATCCTCAAGAGTAGGA+AGG | 0.585427 | 4_3:+14853002 | Msa0631670:CDS |
| CACGCGTCTCTCAAGCGCGT+GGG | 0.588489 | 4_3:+14850193 | Msa0631670:CDS |
| ACCAGCAAAGTCAATTGTGA+TGG | 0.591652 | 4_3:+14853281 | Msa0631670:CDS |
| ATCCAAAAGTCATATGATGT+GGG | 0.594080 | 4_3:+14850015 | Msa0631670:exon |
| AATTTCTCCAGAAGGATCAA+CGG | 0.595122 | 4_3:-14853325 | None:intergenic |
| AGGCAGATGGTTGGGAACAG+AGG | 0.596011 | 4_3:+14855022 | Msa0631670:three_prime_UTR |
| GTGATTCTGTAGGTGTTGGA+GGG | 0.600860 | 4_3:+14851279 | Msa0631670:intron |
| CTCACTGCCAGCAAGTGCCA+TGG | 0.603288 | 4_3:-14853089 | None:intergenic |
| TCACTTATTTGAGCTTGAGG+GGG | 0.611669 | 4_3:+14854199 | Msa0631670:CDS |
| ACTCATTTATCCTCAAGAGT+AGG | 0.617854 | 4_3:+14852998 | Msa0631670:CDS |
| CACAATGGAAGCTACCATTG+TGG | 0.618131 | 4_3:-14850219 | None:intergenic |
| CGATAGATTCGAGAGCCGGA+AGG | 0.619380 | 4_3:+14854761 | Msa0631670:CDS |
| AAGCGCGTGGGTACCCACAA+TGG | 0.628887 | 4_3:+14850205 | Msa0631670:CDS |
| TCACCAGAAAGGATTTGAGG+AGG | 0.629775 | 4_3:+14851362 | Msa0631670:CDS |
| AACCAAGAGCTTCATCACAA+TGG | 0.641621 | 4_3:-14850234 | None:intergenic |
| GCTCTACCTTCACAGTGGCG+AGG | 0.646376 | 4_3:+14854783 | Msa0631670:CDS |
| AATTGTGATGGAGACCATTG+CGG | 0.675025 | 4_3:+14853293 | Msa0631670:CDS |
| TGTTTACAGGAGCTTCATGG+AGG | 0.713991 | 4_3:+14852135 | Msa0631670:CDS |
| AATCAAATATGTTCTGTACG+AGG | 0.739632 | 4_3:+14854241 | Msa0631670:CDS |
| AGGATGAGAGAAGCAAACAG+TGG | 0.743666 | 4_3:+14854712 | Msa0631670:intron |
| GGAAGGCTCTACCTTCACAG+TGG | 0.763082 | 4_3:+14854778 | Msa0631670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAATGATATATTGT+TGG | + | chr4_3:14851120-14851139 | Msa0631670:intron | 10.0% |
| !!! | TTTTTTAATGATATATTGTT+GGG | + | chr4_3:14851121-14851140 | Msa0631670:intron | 10.0% |
| !!! | AATATCTTTTAATTTTAACA+GGG | - | chr4_3:14853946-14853965 | None:intergenic | 10.0% |
| !! | AAAAAATCTCAGAAATTAAA+GGG | - | chr4_3:14850350-14850369 | None:intergenic | 15.0% |
| !! | AAAAAAATCTCAGAAATTAA+AGG | - | chr4_3:14850351-14850370 | None:intergenic | 15.0% |
| !!! | TTTTTATTAGTTATTGAGAA+TGG | + | chr4_3:14850625-14850644 | Msa0631670:intron | 15.0% |
| !!! | AAGTTTTTTTTATTCTAGTT+TGG | + | chr4_3:14851511-14851530 | Msa0631670:intron | 15.0% |
| !! | TATGCAAAATATAATATGAA+AGG | + | chr4_3:14851824-14851843 | Msa0631670:intron | 15.0% |
| !!! | ATATAATATGAAAGGTTTTA+AGG | + | chr4_3:14851832-14851851 | Msa0631670:intron | 15.0% |
| !!! | TATAATATGAAAGGTTTTAA+GGG | + | chr4_3:14851833-14851852 | Msa0631670:intron | 15.0% |
| !!! | TTTTAATTAGATTTTCCATT+TGG | - | chr4_3:14851900-14851919 | None:intergenic | 15.0% |
| !! | AAAGAATATAAAAACAATGA+AGG | - | chr4_3:14852679-14852698 | None:intergenic | 15.0% |
| !! | ATATTCTTTATTGAATGATT+TGG | + | chr4_3:14852690-14852709 | Msa0631670:intron | 15.0% |
| !! | TATTCTTTATTGAATGATTT+GGG | + | chr4_3:14852691-14852710 | Msa0631670:intron | 15.0% |
| !! | ATATTCTTGTTAATTATTTC+AGG | + | chr4_3:14852907-14852926 | Msa0631670:intron | 15.0% |
| !!! | TTCATTTAAAATTTTGAGTT+AGG | + | chr4_3:14853434-14853453 | Msa0631670:intron | 15.0% |
| !!! | GAATATCTTTTAATTTTAAC+AGG | - | chr4_3:14853947-14853966 | None:intergenic | 15.0% |
| !! | TTGTAATTAACATACTTTAT+TGG | + | chr4_3:14854417-14854436 | Msa0631670:intron | 15.0% |
| !! | AAAAATCTCAGAAATTAAAG+GGG | - | chr4_3:14850349-14850368 | None:intergenic | 20.0% |
| !!! | TTCAAAAGTGTAGTTTTTAT+TGG | + | chr4_3:14850560-14850579 | Msa0631670:intron | 20.0% |
| !!! | GAAATATGGTATTTTTTGTT+TGG | + | chr4_3:14850696-14850715 | Msa0631670:intron | 20.0% |
| !!! | TTATTTTAGATTGATTGTGA+TGG | + | chr4_3:14850738-14850757 | Msa0631670:intron | 20.0% |
| !! | ATAAGAGAAACTATTAAGAA+AGG | + | chr4_3:14850801-14850820 | Msa0631670:intron | 20.0% |
| !! | TCATATTCTCAAATTATTAC+TGG | + | chr4_3:14851709-14851728 | Msa0631670:intron | 20.0% |
| !! | TAAAAACATCCAAAAACAAT+TGG | - | chr4_3:14851982-14852001 | None:intergenic | 20.0% |
| !!! | TGAGTATTATTCACATATTT+TGG | - | chr4_3:14852983-14853002 | None:intergenic | 20.0% |
| !! | AAATGGAGAAATTTAGAAAA+CGG | - | chr4_3:14854079-14854098 | None:intergenic | 20.0% |
| !!! | TCCATTTCTTTAATTTTCTT+TGG | + | chr4_3:14854092-14854111 | Msa0631670:intron | 20.0% |
| !!! | CCATTTCTTTAATTTTCTTT+GGG | + | chr4_3:14854093-14854112 | Msa0631670:intron | 20.0% |
| !!! | ATGTTGATAAATGTTTTAGA+AGG | + | chr4_3:14854334-14854353 | Msa0631670:intron | 20.0% |
| !! | ATGATGAAAAAATCCAATAT+AGG | + | chr4_3:14854453-14854472 | Msa0631670:intron | 20.0% |
| !! | TGATGAAAAAATCCAATATA+GGG | + | chr4_3:14854454-14854473 | Msa0631670:intron | 20.0% |
| !! | GAACATAAATCAAAGATATA+CGG | - | chr4_3:14854640-14854659 | None:intergenic | 20.0% |
| !! | CTTAAAAAAGTTAATAACTC+GGG | - | chr4_3:14855132-14855151 | None:intergenic | 20.0% |
| !! | CCTTAAAAAAGTTAATAACT+CGG | - | chr4_3:14855133-14855152 | None:intergenic | 20.0% |
| !! | TCTTTATGATAAAATGTCAT+TGG | + | chr4_3:14855202-14855221 | Msa0631670:three_prime_UTR | 20.0% |
| !! | AGAACAAAAAATTCATGATA+TGG | - | chr4_3:14855252-14855271 | None:intergenic | 20.0% |
| ! | AAAATCTCAGAAATTAAAGG+GGG | - | chr4_3:14850348-14850367 | None:intergenic | 25.0% |
| ! | TTGTTTGCTTGATGAAAAAA+AGG | + | chr4_3:14850431-14850450 | Msa0631670:intron | 25.0% |
| ! | AAACAAACTAATATCTCACT+GGG | - | chr4_3:14850970-14850989 | None:intergenic | 25.0% |
| ! | TAAACAAACTAATATCTCAC+TGG | - | chr4_3:14850971-14850990 | None:intergenic | 25.0% |
| !!! | AGTGAGATATTAGTTTGTTT+AGG | + | chr4_3:14850970-14850989 | Msa0631670:intron | 25.0% |
| !!! | GATTTTGTGCATTTGTTATT+TGG | + | chr4_3:14851047-14851066 | Msa0631670:intron | 25.0% |
| ! | AAACTAAATTGTGATTCTGT+AGG | + | chr4_3:14851269-14851288 | Msa0631670:intron | 25.0% |
| ! | ATCAGCACTTCATAAAATAT+AGG | - | chr4_3:14851467-14851486 | None:intergenic | 25.0% |
| !! | TAGTTTGGTTCAATATGAAA+GGG | + | chr4_3:14851526-14851545 | Msa0631670:intron | 25.0% |
| !!! | AAAGGTTTTAAGGGTAATAA+AGG | + | chr4_3:14851842-14851861 | Msa0631670:intron | 25.0% |
| !! | GTACAATTACCAATTGTTTT+TGG | + | chr4_3:14851970-14851989 | Msa0631670:intron | 25.0% |
| !!! | TCTACTATGTCTTCTTTTTT+CGG | + | chr4_3:14852028-14852047 | Msa0631670:intron | 25.0% |
| ! | GATTATAGCTAATGAACTTA+AGG | + | chr4_3:14852072-14852091 | Msa0631670:CDS | 25.0% |
| !!! | AATATACGTAATGGACATTT+TGG | - | chr4_3:14852111-14852130 | None:intergenic | 25.0% |
| ! | AAATGTCCATTACGTATATT+TGG | + | chr4_3:14852111-14852130 | Msa0631670:CDS | 25.0% |
| ! | TTTCTCTTGCAATAATAACA+GGG | + | chr4_3:14852357-14852376 | Msa0631670:intron | 25.0% |
| !!! | AGTTAGCTTAGCTTTATATA+GGG | - | chr4_3:14852390-14852409 | None:intergenic | 25.0% |
| ! | AAATTAAATCCAAAAACACG+TGG | - | chr4_3:14852761-14852780 | None:intergenic | 25.0% |
| !!! | GTATTATTCACATATTTTGG+AGG | - | chr4_3:14852980-14852999 | None:intergenic | 25.0% |
| !! | AAGAAAATGAAGCATTTCAT+CGG | + | chr4_3:14853065-14853084 | Msa0631670:CDS | 25.0% |
| ! | TCATTTCCTTGATATTCTTA+GGG | - | chr4_3:14853159-14853178 | None:intergenic | 25.0% |
| ! | AAACAATGAAAAGGTAAAAC+AGG | - | chr4_3:14853204-14853223 | None:intergenic | 25.0% |
| ! | AAAACTAAAATTTCTCCAGA+AGG | - | chr4_3:14853336-14853355 | None:intergenic | 25.0% |
| ! | TCATACAAAATGTTAGAAGA+GGG | - | chr4_3:14853396-14853415 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTGCAAATTTTCG+TGG | + | chr4_3:14853559-14853578 | Msa0631670:intron | 25.0% |
| ! | AAACTTCAAATCATGATTTC+AGG | - | chr4_3:14853610-14853629 | None:intergenic | 25.0% |
| !! | TACAAATTTTTCATTCAAGC+TGG | + | chr4_3:14853699-14853718 | Msa0631670:intron | 25.0% |
| ! | AATAATTATAGAACTCTCTG+TGG | - | chr4_3:14853822-14853841 | None:intergenic | 25.0% |
| ! | CTATAATTATTGCAGTAATC+AGG | + | chr4_3:14853831-14853850 | Msa0631670:intron | 25.0% |
| ! | GTTCCTATATAATAGAACAT+TGG | - | chr4_3:14854043-14854062 | None:intergenic | 25.0% |
| ! | AATGGAGAAATTTAGAAAAC+GGG | - | chr4_3:14854078-14854097 | None:intergenic | 25.0% |
| ! | CCCAAAGAAAATTAAAGAAA+TGG | - | chr4_3:14854096-14854115 | None:intergenic | 25.0% |
| ! | GTATGTTAATTACAACAATC+TGG | - | chr4_3:14854412-14854431 | None:intergenic | 25.0% |
| ! | GAAATGTTCTGCAAAATTAA+TGG | - | chr4_3:14854974-14854993 | None:intergenic | 25.0% |
| !! | GTTTTATGATTGCATTAAAG+AGG | + | chr4_3:14855002-14855021 | Msa0631670:three_prime_UTR | 25.0% |
| ! | TCTTTAATGCAATCATAACT+CGG | - | chr4_3:14855068-14855087 | None:intergenic | 25.0% |
| !!! | CCGAGTTATTAACTTTTTTA+AGG | + | chr4_3:14855130-14855149 | Msa0631670:intron | 25.0% |
| ! | CTTTCTTCACTAATGTATTA+TGG | + | chr4_3:14855175-14855194 | Msa0631670:three_prime_UTR | 25.0% |
| !!! | TCATTGGTTTTTGTTTAATC+AGG | + | chr4_3:14855218-14855237 | Msa0631670:three_prime_UTR | 25.0% |
| ! | AAAACTAGAGGAGAGATTTT+AGG | + | chr4_3:14849975-14849994 | Msa0631670:five_prime_UTR | 30.0% |
| AATCCAAAAGTCATATGATG+TGG | + | chr4_3:14850014-14850033 | Msa0631670:exon | 30.0% | |
| ATCCAAAAGTCATATGATGT+GGG | + | chr4_3:14850015-14850034 | Msa0631670:exon | 30.0% | |
| AAATCTCAGAAATTAAAGGG+GGG | - | chr4_3:14850347-14850366 | None:intergenic | 30.0% | |
| !!! | TGAAGAGTTGCGTTTTTTAT+TGG | + | chr4_3:14850479-14850498 | Msa0631670:intron | 30.0% |
| !! | TTGATTTGACTTGATGTGAA+TGG | + | chr4_3:14850660-14850679 | Msa0631670:intron | 30.0% |
| ! | GGAATTCTGATACTTTTGTT+AGG | + | chr4_3:14850759-14850778 | Msa0631670:intron | 30.0% |
| ! | GGTCTAGTTTGATAGAAATA+TGG | + | chr4_3:14850822-14850841 | Msa0631670:intron | 30.0% |
| TGGTATGTGATAGAATGATA+TGG | + | chr4_3:14850842-14850861 | Msa0631670:intron | 30.0% | |
| AAACCTTATTCCACTAAGTA+GGG | - | chr4_3:14850891-14850910 | None:intergenic | 30.0% | |
| !! | GAGATATTAGTTTGTTTAGG+AGG | + | chr4_3:14850973-14850992 | Msa0631670:intron | 30.0% |
| TAATGATATATTGTTGGGAG+AGG | + | chr4_3:14851126-14851145 | Msa0631670:intron | 30.0% | |
| TAACTACCAAAAAGAAACAC+CGG | - | chr4_3:14851177-14851196 | None:intergenic | 30.0% | |
| TGTTTAGCTATTGAATGAAG+CGG | + | chr4_3:14851204-14851223 | Msa0631670:intron | 30.0% | |
| ! | CTAGTTTGGTTCAATATGAA+AGG | + | chr4_3:14851525-14851544 | Msa0631670:intron | 30.0% |
| ATGAAAGCAAAAATTGAGTG+AGG | - | chr4_3:14851586-14851605 | None:intergenic | 30.0% | |
| ! | TTTTTGCTTTCATGCAATAC+TGG | + | chr4_3:14851593-14851612 | Msa0631670:intron | 30.0% |
| ! | TTTTGCTTTCATGCAATACT+GGG | + | chr4_3:14851594-14851613 | Msa0631670:intron | 30.0% |
| TTGAATGTAATCACATGTGT+CGG | - | chr4_3:14851686-14851705 | None:intergenic | 30.0% | |
| ATTCACACTGTTTGTTTCAA+AGG | - | chr4_3:14851938-14851957 | None:intergenic | 30.0% | |
| AAACAGCCAAATATACGTAA+TGG | - | chr4_3:14852120-14852139 | None:intergenic | 30.0% | |
| AGAAAAAATTTGACCAAGCA+AGG | - | chr4_3:14852218-14852237 | None:intergenic | 30.0% | |
| GTACATTGATATCTCAATCT+TGG | + | chr4_3:14852266-14852285 | Msa0631670:intron | 30.0% | |
| ATGAAAACAGAGTAAAGACA+GGG | + | chr4_3:14852294-14852313 | Msa0631670:intron | 30.0% | |
| CTTTCTCTTGCAATAATAAC+AGG | + | chr4_3:14852356-14852375 | Msa0631670:intron | 30.0% | |
| !! | GAGTTAGCTTAGCTTTATAT+AGG | - | chr4_3:14852391-14852410 | None:intergenic | 30.0% |
| ! | TAGTTGACTCACTTAACTAA+TGG | + | chr4_3:14852443-14852462 | Msa0631670:intron | 30.0% |
| ! | TTGATTGATTCCATTGTCTA+CGG | - | chr4_3:14852942-14852961 | None:intergenic | 30.0% |
| ! | AGAAAATGAAGCATTTCATC+GGG | + | chr4_3:14853066-14853085 | Msa0631670:CDS | 30.0% |
| CTCATTTCCTTGATATTCTT+AGG | - | chr4_3:14853160-14853179 | None:intergenic | 30.0% | |
| CTAAGAATATCAAGGAAATG+AGG | + | chr4_3:14853158-14853177 | Msa0631670:intron | 30.0% | |
| TCGTTCAGAAAACAATGAAA+AGG | - | chr4_3:14853213-14853232 | None:intergenic | 30.0% | |
| GTCATACAAAATGTTAGAAG+AGG | - | chr4_3:14853397-14853416 | None:intergenic | 30.0% | |
| CAAGCATCAAATCATGATTT+CGG | - | chr4_3:14853480-14853499 | None:intergenic | 30.0% | |
| TTGAAGTTTGAACAAGTACT+TGG | + | chr4_3:14853621-14853640 | Msa0631670:intron | 30.0% | |
| ! | AAATTTTTCATTCAAGCTGG+TGG | + | chr4_3:14853702-14853721 | Msa0631670:intron | 30.0% |
| AGTAACAGTTATCATCTAGT+CGG | - | chr4_3:14853765-14853784 | None:intergenic | 30.0% | |
| ! | TTTTTAACACATAGCATCCA+TGG | - | chr4_3:14853870-14853889 | None:intergenic | 30.0% |
| GGACCAATGTTCTATTATAT+AGG | + | chr4_3:14854037-14854056 | Msa0631670:intron | 30.0% | |
| TTTGGGTATTACTGTATTAG+CGG | + | chr4_3:14854110-14854129 | Msa0631670:intron | 30.0% | |
| !!! | ACTGATTTTATTTTCTGCAG+TGG | + | chr4_3:14854171-14854190 | Msa0631670:intron | 30.0% |
| ACAGAACATATTTGATTGGT+GGG | - | chr4_3:14854238-14854257 | None:intergenic | 30.0% | |
| TACAGAACATATTTGATTGG+TGG | - | chr4_3:14854239-14854258 | None:intergenic | 30.0% | |
| TCGTACAGAACATATTTGAT+TGG | - | chr4_3:14854242-14854261 | None:intergenic | 30.0% | |
| AATCAAATATGTTCTGTACG+AGG | + | chr4_3:14854241-14854260 | Msa0631670:CDS | 30.0% | |
| !! | AAAACAAAAGCACCCTATAT+TGG | - | chr4_3:14854469-14854488 | None:intergenic | 30.0% |
| TCACAACAAAACAACCTTAA+TGG | - | chr4_3:14854611-14854630 | None:intergenic | 30.0% | |
| TTGTAACAAGTCAAACACTA+TGG | + | chr4_3:14854947-14854966 | Msa0631670:three_prime_UTR | 30.0% | |
| CTTTAATGCAATCATAACTC+GGG | - | chr4_3:14855067-14855086 | None:intergenic | 30.0% | |
| GAGTTATGATTGCATTAAAG+AGG | + | chr4_3:14855067-14855086 | Msa0631670:intron | 30.0% | |
| GTGGAAATGGAATTGGAATT+TGG | - | chr4_3:14850077-14850096 | None:intergenic | 35.0% | |
| AAATGCTTCTGCTTGTACTT+GGG | - | chr4_3:14850103-14850122 | None:intergenic | 35.0% | |
| TGTCTAACACTAAAACAGCT+AGG | + | chr4_3:14850143-14850162 | Msa0631670:CDS | 35.0% | |
| GTCTAACACTAAAACAGCTA+GGG | + | chr4_3:14850144-14850163 | Msa0631670:CDS | 35.0% | |
| CAAACCTTATTCCACTAAGT+AGG | - | chr4_3:14850892-14850911 | None:intergenic | 35.0% | |
| CTACTTAGTGGAATAAGGTT+TGG | + | chr4_3:14850890-14850909 | Msa0631670:intron | 35.0% | |
| ATTTGGATGCTGAGAAAATG+TGG | + | chr4_3:14851064-14851083 | Msa0631670:intron | 35.0% | |
| ATGCTGAGAAAATGTGGATA+AGG | + | chr4_3:14851070-14851089 | Msa0631670:intron | 35.0% | |
| TGCTGAGAAAATGTGGATAA+GGG | + | chr4_3:14851071-14851090 | Msa0631670:intron | 35.0% | |
| !!! | TGATGTTTTTAGCTTGCTAC+CGG | + | chr4_3:14851155-14851174 | Msa0631670:intron | 35.0% |
| AATTGTGATTCTGTAGGTGT+TGG | + | chr4_3:14851275-14851294 | Msa0631670:intron | 35.0% | |
| ! | AAAGGATTTGAGGAGGTTTT+TGG | + | chr4_3:14851369-14851388 | Msa0631670:CDS | 35.0% |
| ! | AAGGATTTGAGGAGGTTTTT+GGG | + | chr4_3:14851370-14851389 | Msa0631670:CDS | 35.0% |
| ! | TGCTGATTGAAGTGAAATAG+AGG | + | chr4_3:14851480-14851499 | Msa0631670:intron | 35.0% |
| GCTGATTGAAGTGAAATAGA+GGG | + | chr4_3:14851481-14851500 | Msa0631670:intron | 35.0% | |
| ATTGAAGTGAAATAGAGGGA+GGG | + | chr4_3:14851485-14851504 | Msa0631670:intron | 35.0% | |
| ! | TTTGGTTCAATATGAAAGGG+AGG | + | chr4_3:14851529-14851548 | Msa0631670:intron | 35.0% |
| TTGGTTCAATATGAAAGGGA+GGG | + | chr4_3:14851530-14851549 | Msa0631670:intron | 35.0% | |
| TATGAAAGGGAGGGTAATAA+AGG | + | chr4_3:14851539-14851558 | Msa0631670:intron | 35.0% | |
| ATGAAAGGGAGGGTAATAAA+GGG | + | chr4_3:14851540-14851559 | Msa0631670:intron | 35.0% | |
| TGAAACACTAACATAGACAC+CGG | - | chr4_3:14851757-14851776 | None:intergenic | 35.0% | |
| TTTCCATTTGGTTAGAAGAG+AGG | - | chr4_3:14851888-14851907 | None:intergenic | 35.0% | |
| ACACTGTTTGTTTCAAAGGA+GGG | - | chr4_3:14851934-14851953 | None:intergenic | 35.0% | |
| TGGTAATTGTACCAAAACAG+AGG | - | chr4_3:14851962-14851981 | None:intergenic | 35.0% | |
| !! | TTTTTCGGTGTGTAGCATTT+TGG | + | chr4_3:14852043-14852062 | Msa0631670:intron | 35.0% |
| ACGTATATTTGGCTGTTTAC+AGG | + | chr4_3:14852122-14852141 | Msa0631670:CDS | 35.0% | |
| AAACATTGTAGTACCTTGCT+TGG | + | chr4_3:14852202-14852221 | Msa0631670:intron | 35.0% | |
| GATATCAATGTACCAAGCAA+GGG | - | chr4_3:14852259-14852278 | None:intergenic | 35.0% | |
| AGATATCAATGTACCAAGCA+AGG | - | chr4_3:14852260-14852279 | None:intergenic | 35.0% | |
| CATGAAAACAGAGTAAAGAC+AGG | + | chr4_3:14852293-14852312 | Msa0631670:intron | 35.0% | |
| TAGGTTCTCTCAGAATATCT+TGG | - | chr4_3:14852578-14852597 | None:intergenic | 35.0% | |
| ATTCTCTGTCTCACAACATA+AGG | - | chr4_3:14852732-14852751 | None:intergenic | 35.0% | |
| ! | AATTGAGAACCACGTGTTTT+TGG | + | chr4_3:14852749-14852768 | Msa0631670:intron | 35.0% |
| !! | TATTCACATATTTTGGAGGC+TGG | - | chr4_3:14852976-14852995 | None:intergenic | 35.0% |
| ACTCATTTATCCTCAAGAGT+AGG | + | chr4_3:14852998-14853017 | Msa0631670:CDS | 35.0% | |
| ATTTATCCTCAAGAGTAGGA+AGG | + | chr4_3:14853002-14853021 | Msa0631670:CDS | 35.0% | |
| ATTAAACCTTCCTACTCTTG+AGG | - | chr4_3:14853011-14853030 | None:intergenic | 35.0% | |
| AAGAGTAGGAAGGTTTAATC+TGG | + | chr4_3:14853012-14853031 | Msa0631670:CDS | 35.0% | |
| TAGGAAGGTTTAATCTGGAT+TGG | + | chr4_3:14853017-14853036 | Msa0631670:CDS | 35.0% | |
| TTCTTTCTCAGATGACTGAT+CGG | - | chr4_3:14853050-14853069 | None:intergenic | 35.0% | |
| TCTGAACCCTAAGAATATCA+AGG | + | chr4_3:14853150-14853169 | Msa0631670:intron | 35.0% | |
| AATTTCTCCAGAAGGATCAA+CGG | - | chr4_3:14853328-14853347 | None:intergenic | 35.0% | |
| TACAAAATGTTAGAAGAGGG+AGG | - | chr4_3:14853393-14853412 | None:intergenic | 35.0% | |
| AATTATTGCAGTAATCAGGC+AGG | + | chr4_3:14853835-14853854 | Msa0631670:intron | 35.0% | |
| GTTAAAAACCGTCACTGTAA+TGG | + | chr4_3:14853882-14853901 | Msa0631670:intron | 35.0% | |
| GTACCAATATGACTATAGAC+AGG | + | chr4_3:14853977-14853996 | Msa0631670:intron | 35.0% | |
| CAACCTGTCTATAGTCATAT+TGG | - | chr4_3:14853983-14854002 | None:intergenic | 35.0% | |
| !!! | CTGTTGTTTTTGTCCTAGAA+TGG | + | chr4_3:14854006-14854025 | Msa0631670:intron | 35.0% |
| CTTCACTTATTTGAGCTTGA+GGG | + | chr4_3:14854197-14854216 | Msa0631670:CDS | 35.0% | |
| TTCACTTATTTGAGCTTGAG+GGG | + | chr4_3:14854198-14854217 | Msa0631670:CDS | 35.0% | |
| TTCTCAAGTAGTCTCCAATA+GGG | + | chr4_3:14854310-14854329 | Msa0631670:intron | 35.0% | |
| CATTTATCAACATGCCCTAT+TGG | - | chr4_3:14854327-14854346 | None:intergenic | 35.0% | |
| !!! | GGCTTTTATTGGCTTTGTTT+CGG | + | chr4_3:14854369-14854388 | Msa0631670:intron | 35.0% |
| ! | CTTTTCTCAATATTCTCCAC+AGG | + | chr4_3:14854692-14854711 | Msa0631670:intron | 35.0% |
| ATATGGACAAAAACACAACC+AGG | - | chr4_3:14854846-14854865 | None:intergenic | 35.0% | |
| !! | TGTGTTTTTGTCCATATGAG+TGG | + | chr4_3:14854849-14854868 | Msa0631670:CDS | 35.0% |
| ! | GTCCATATGAGTGGATTTAT+TGG | + | chr4_3:14854858-14854877 | Msa0631670:CDS | 35.0% |
| ! | CATATGAGTGGATTTATTGG+CGG | + | chr4_3:14854861-14854880 | Msa0631670:CDS | 35.0% |
| !! | AAAAGCTGCTTTGAAGATGT+AGG | + | chr4_3:14854917-14854936 | Msa0631670:CDS | 35.0% |
| ! | TGCCCACATCATATGACTTT+TGG | - | chr4_3:14850020-14850039 | None:intergenic | 40.0% |
| AATGCTTCTGCTTGTACTTG+GGG | - | chr4_3:14850102-14850121 | None:intergenic | 40.0% | |
| GAAATGCTTCTGCTTGTACT+TGG | - | chr4_3:14850104-14850123 | None:intergenic | 40.0% | |
| ACAATGGAAGCTACCATTGT+GGG | - | chr4_3:14850221-14850240 | None:intergenic | 40.0% | |
| TTCCATTGTGATGAAGCTCT+TGG | + | chr4_3:14850232-14850251 | Msa0631670:CDS | 40.0% | |
| AACCAAGAGCTTCATCACAA+TGG | - | chr4_3:14850237-14850256 | None:intergenic | 40.0% | |
| AATTAAAGGGGGGTTGAGAA+GGG | - | chr4_3:14850337-14850356 | None:intergenic | 40.0% | |
| AAATTAAAGGGGGGTTGAGA+AGG | - | chr4_3:14850338-14850357 | None:intergenic | 40.0% | |
| ! | GTGTTGTTGCTGAGGAAATA+TGG | + | chr4_3:14850682-14850701 | Msa0631670:intron | 40.0% |
| ! | TTGTTAGGTTGCTGACGAAA+TGG | + | chr4_3:14850774-14850793 | Msa0631670:intron | 40.0% |
| CTTATTCCACTAAGTAGGGT+CGG | - | chr4_3:14850887-14850906 | None:intergenic | 40.0% | |
| TGAGAAAATGTGGATAAGGG+TGG | + | chr4_3:14851074-14851093 | Msa0631670:intron | 40.0% | |
| ! | TTGCTACCGGTGTTTCTTTT+TGG | + | chr4_3:14851168-14851187 | Msa0631670:intron | 40.0% |
| CTTGATGCTGTTCTTGATGT+TGG | + | chr4_3:14851303-14851322 | Msa0631670:CDS | 40.0% | |
| ATGCTGTTCTTGATGTTGGA+GGG | + | chr4_3:14851307-14851326 | Msa0631670:CDS | 40.0% | |
| GTGATGATCATAACGATCTC+GGG | - | chr4_3:14851346-14851365 | None:intergenic | 40.0% | |
| GGTGATGATCATAACGATCT+CGG | - | chr4_3:14851347-14851366 | None:intergenic | 40.0% | |
| CGTTATGATCATCACCAGAA+AGG | + | chr4_3:14851351-14851370 | Msa0631670:CDS | 40.0% | |
| TCATCACCAGAAAGGATTTG+AGG | + | chr4_3:14851359-14851378 | Msa0631670:CDS | 40.0% | |
| AAACCTCCTCAAATCCTTTC+TGG | - | chr4_3:14851368-14851387 | None:intergenic | 40.0% | |
| !! | CAGTGCTGGTCTTGTTTATA+AGG | + | chr4_3:14851416-14851435 | Msa0631670:CDS | 40.0% |
| GATTGAAGTGAAATAGAGGG+AGG | + | chr4_3:14851484-14851503 | Msa0631670:intron | 40.0% | |
| ! | CTTTTGATCGACAATGTGTC+TGG | + | chr4_3:14851646-14851665 | Msa0631670:intron | 40.0% |
| CACTGTTTGTTTCAAAGGAG+GGG | - | chr4_3:14851933-14851952 | None:intergenic | 40.0% | |
| CACACTGTTTGTTTCAAAGG+AGG | - | chr4_3:14851935-14851954 | None:intergenic | 40.0% | |
| ! | CAGTGTGAATTCCTCTGTTT+TGG | + | chr4_3:14851948-14851967 | Msa0631670:intron | 40.0% |
| TTAAAACAGAGTCCCTTGCT+TGG | + | chr4_3:14852244-14852263 | Msa0631670:intron | 40.0% | |
| AAAGACAGGGAGAATTGAAG+AGG | + | chr4_3:14852307-14852326 | Msa0631670:intron | 40.0% | |
| ! | TTTGATAATCGCCTGCAGAA+TGG | + | chr4_3:14852778-14852797 | Msa0631670:intron | 40.0% |
| GTTCGTTAGTCCTCTTAAAG+TGG | + | chr4_3:14852821-14852840 | Msa0631670:intron | 40.0% | |
| ! | CACTAATCAGCCACTTTAAG+AGG | - | chr4_3:14852834-14852853 | None:intergenic | 40.0% |
| TCTTTCTCAGATGACTGATC+GGG | - | chr4_3:14853049-14853068 | None:intergenic | 40.0% | |
| TGAAAACGAACACTCTGCAA+AGG | - | chr4_3:14853246-14853265 | None:intergenic | 40.0% | |
| ACCAGCAAAGTCAATTGTGA+TGG | + | chr4_3:14853281-14853300 | Msa0631670:CDS | 40.0% | |
| ! | TCCATCACAATTGACTTTGC+TGG | - | chr4_3:14853285-14853304 | None:intergenic | 40.0% |
| ! | AATTGTGATGGAGACCATTG+CGG | + | chr4_3:14853293-14853312 | Msa0631670:CDS | 40.0% |
| GGCAAGAATAATCAACTCAC+AGG | - | chr4_3:14853372-14853391 | None:intergenic | 40.0% | |
| GAACATAGCCATTACAGTGA+CGG | - | chr4_3:14853893-14853912 | None:intergenic | 40.0% | |
| TTGTCCTAGAATGGTCATCA+TGG | + | chr4_3:14854015-14854034 | Msa0631670:intron | 40.0% | |
| TGTCCTAGAATGGTCATCAT+GGG | + | chr4_3:14854016-14854035 | Msa0631670:intron | 40.0% | |
| AGCGGCATTATACTAAGTAC+TGG | + | chr4_3:14854128-14854147 | Msa0631670:intron | 40.0% | |
| GCTTCACTTATTTGAGCTTG+AGG | + | chr4_3:14854196-14854215 | Msa0631670:CDS | 40.0% | |
| TCACTTATTTGAGCTTGAGG+GGG | + | chr4_3:14854199-14854218 | Msa0631670:CDS | 40.0% | |
| GTTCTCAAGTAGTCTCCAAT+AGG | + | chr4_3:14854309-14854328 | Msa0631670:intron | 40.0% | |
| !! | TTTTAGAAGGACCGCTAAGT+TGG | + | chr4_3:14854347-14854366 | Msa0631670:intron | 40.0% |
| TTTAGAAGGACCGCTAAGTT+GGG | + | chr4_3:14854348-14854367 | Msa0631670:intron | 40.0% | |
| CCAATAAAAGCCCAACTTAG+CGG | - | chr4_3:14854361-14854380 | None:intergenic | 40.0% | |
| ATTAAGCTGAGCAAATGCAG+AGG | - | chr4_3:14854553-14854572 | None:intergenic | 40.0% | |
| ATTGTCCAACTGCACCATTA+AGG | + | chr4_3:14854594-14854613 | Msa0631670:intron | 40.0% | |
| AACAACCTTAATGGTGCAGT+TGG | - | chr4_3:14854602-14854621 | None:intergenic | 40.0% | |
| CGCCAATAAATCCACTCATA+TGG | - | chr4_3:14854863-14854882 | None:intergenic | 40.0% | |
| ! | CCAAAGCACCTTCAAAAGTT+TGG | - | chr4_3:14854890-14854909 | None:intergenic | 40.0% |
| !!! | CCAAACTTTTGAAGGTGCTT+TGG | + | chr4_3:14854887-14854906 | Msa0631670:CDS | 40.0% |
| !! | TGCTTTGAAGATGTAGGCAA+AGG | + | chr4_3:14854923-14854942 | Msa0631670:exon | 40.0% |
| GATTGCATTAAAGAGGCAGA+TGG | + | chr4_3:14855009-14855028 | Msa0631670:three_prime_UTR | 40.0% | |
| CATTAAAGAGGCAGATGGTT+GGG | + | chr4_3:14855014-14855033 | Msa0631670:three_prime_UTR | 40.0% | |
| GATTGCATTAAAGAGGCAGA+TGG | + | chr4_3:14855009-14855028 | Msa0631670:three_prime_UTR | 40.0% | |
| CATTAAAGAGGCAGATGGTT+GGG | + | chr4_3:14855014-14855033 | Msa0631670:three_prime_UTR | 40.0% | |
| TGGGGAAGTGGAAATGGAAT+TGG | - | chr4_3:14850084-14850103 | None:intergenic | 45.0% | |
| TGTACTTGGGGAAGTGGAAA+TGG | - | chr4_3:14850090-14850109 | None:intergenic | 45.0% | |
| CACAATGGAAGCTACCATTG+TGG | - | chr4_3:14850222-14850241 | None:intergenic | 45.0% | |
| !! | TGTGAATGGTGTTGTTGCTG+AGG | + | chr4_3:14850674-14850693 | Msa0631670:intron | 45.0% |
| CGACCCTACTTAGTGGAATA+AGG | + | chr4_3:14850885-14850904 | Msa0631670:intron | 45.0% | |
| !! | TGTGATTCTGTAGGTGTTGG+AGG | + | chr4_3:14851278-14851297 | Msa0631670:intron | 45.0% |
| !! | GTGATTCTGTAGGTGTTGGA+GGG | + | chr4_3:14851279-14851298 | Msa0631670:intron | 45.0% |
| GATGCTGTTCTTGATGTTGG+AGG | + | chr4_3:14851306-14851325 | Msa0631670:CDS | 45.0% | |
| TGCTGTTCTTGATGTTGGAG+GGG | + | chr4_3:14851308-14851327 | Msa0631670:CDS | 45.0% | |
| TCACCAGAAAGGATTTGAGG+AGG | + | chr4_3:14851362-14851381 | Msa0631670:CDS | 45.0% | |
| !! | TTTGAGGAGGTTTTTGGGCA+TGG | + | chr4_3:14851375-14851394 | Msa0631670:CDS | 45.0% |
| CCATTTGGTTAGAAGAGAGG+AGG | - | chr4_3:14851885-14851904 | None:intergenic | 45.0% | |
| CCTCCTCTCTTCTAACCAAA+TGG | + | chr4_3:14851882-14851901 | Msa0631670:intron | 45.0% | |
| TGTTTACAGGAGCTTCATGG+AGG | + | chr4_3:14852135-14852154 | Msa0631670:CDS | 45.0% | |
| CTGATAGCTGTCAGTCAGTA+AGG | - | chr4_3:14852422-14852441 | None:intergenic | 45.0% | |
| GACTCACACTGTTGCATATC+GGG | - | chr4_3:14852499-14852518 | None:intergenic | 45.0% | |
| CGACTCACACTGTTGCATAT+CGG | - | chr4_3:14852500-14852519 | None:intergenic | 45.0% | |
| ACAGTGTGAGTCGCAGAATT+AGG | + | chr4_3:14852507-14852526 | Msa0631670:intron | 45.0% | |
| !! | ACTCGCTCACTGACTTACTA+AGG | + | chr4_3:14852612-14852631 | Msa0631670:intron | 45.0% |
| !! | CTCGCTCACTGACTTACTAA+GGG | + | chr4_3:14852613-14852632 | Msa0631670:intron | 45.0% |
| !! | TCGCTCACTGACTTACTAAG+GGG | + | chr4_3:14852614-14852633 | Msa0631670:intron | 45.0% |
| GCAATTGATGCCGTAGACAA+TGG | + | chr4_3:14852929-14852948 | Msa0631670:CDS | 45.0% | |
| ! | TTCGTTTTCACGTGAACTCG+TGG | + | chr4_3:14853256-14853275 | Msa0631670:CDS | 45.0% |
| AGACAAACCGTTGATCCTTC+TGG | + | chr4_3:14853318-14853337 | Msa0631670:CDS | 45.0% | |
| TAACTGTTACTGCCTGTGAC+TGG | + | chr4_3:14853774-14853793 | Msa0631670:intron | 45.0% | |
| AAGAACAACCAACCAGTCAC+AGG | - | chr4_3:14853789-14853808 | None:intergenic | 45.0% | |
| !! | CCGCTAAGTTGGGCTTTTAT+TGG | + | chr4_3:14854358-14854377 | Msa0631670:intron | 45.0% |
| TGTTTGCTTCTCTCATCCTG+TGG | - | chr4_3:14854711-14854730 | None:intergenic | 45.0% | |
| AGGATGAGAGAAGCAAACAG+TGG | + | chr4_3:14854712-14854731 | Msa0631670:intron | 45.0% | |
| GACGTACTGTCAAAGGAATC+TGG | + | chr4_3:14854816-14854835 | Msa0631670:CDS | 45.0% | |
| TCAAAGGAATCTGGCATTCC+TGG | + | chr4_3:14854825-14854844 | Msa0631670:CDS | 45.0% | |
| ! | GGCGGAAACCAAACTTTTGA+AGG | + | chr4_3:14854879-14854898 | Msa0631670:CDS | 45.0% |
| !!! | TTTTGAAGGTGCTTTGGCCA+TGG | + | chr4_3:14854893-14854912 | Msa0631670:CDS | 45.0% |
| ! | CTTCAAAGCAGCTTTTGCCA+TGG | - | chr4_3:14854913-14854932 | None:intergenic | 45.0% |
| GCATTAAAGAGGCAGATGGT+TGG | + | chr4_3:14855013-14855032 | Msa0631670:three_prime_UTR | 45.0% | |
| GCATTAAAGAGGCAGATGGT+TGG | + | chr4_3:14855013-14855032 | Msa0631670:three_prime_UTR | 45.0% | |
| TCTGCTTGTACTTGGGGAAG+TGG | - | chr4_3:14850096-14850115 | None:intergenic | 50.0% | |
| TTGAGAGACGCGTGAGAAGA+AGG | - | chr4_3:14850187-14850206 | None:intergenic | 50.0% | |
| ACTAAGTAGGGTCGGCTACA+TGG | - | chr4_3:14850879-14850898 | None:intergenic | 50.0% | |
| ATGTAGCCGACCCTACTTAG+TGG | + | chr4_3:14850878-14850897 | Msa0631670:intron | 50.0% | |
| TGATCATAACGATCTCGGGC+AGG | - | chr4_3:14851342-14851361 | None:intergenic | 50.0% | |
| ! | TCCACTAAGTTGAGCAGTGC+TGG | + | chr4_3:14851402-14851421 | Msa0631670:CDS | 50.0% |
| ACCAGCACTGCTCAACTTAG+TGG | - | chr4_3:14851406-14851425 | None:intergenic | 50.0% | |
| CAACGTGTCTGTGTTGTGTC+CGG | + | chr4_3:14851735-14851754 | Msa0631670:intron | 50.0% | |
| GGCTGTTTACAGGAGCTTCA+TGG | + | chr4_3:14852132-14852151 | Msa0631670:CDS | 50.0% | |
| AATCGCCTGCAGAATGGCTT+AGG | + | chr4_3:14852784-14852803 | Msa0631670:intron | 50.0% | |
| ATCGCCTGCAGAATGGCTTA+GGG | + | chr4_3:14852785-14852804 | Msa0631670:intron | 50.0% | |
| ATTCCCCTAAGCCATTCTGC+AGG | - | chr4_3:14852792-14852811 | None:intergenic | 50.0% | |
| AGAATGGCTTAGGGGAATGC+TGG | + | chr4_3:14852794-14852813 | Msa0631670:intron | 50.0% | |
| ! | TGAAGCATTTCATCGGGCCA+TGG | + | chr4_3:14853072-14853091 | Msa0631670:CDS | 50.0% |
| ! | ACTTGCTGGCAGTGAGTTTC+TGG | + | chr4_3:14853096-14853115 | Msa0631670:CDS | 50.0% |
| CGAACACTCTGCAAAGGAAG+AGG | - | chr4_3:14853240-14853259 | None:intergenic | 50.0% | |
| AACGGTTTGTCTAGCCGCAA+TGG | - | chr4_3:14853310-14853329 | None:intergenic | 50.0% | |
| TGTTACTGCCTGTGACTGGT+TGG | + | chr4_3:14853778-14853797 | Msa0631670:intron | 50.0% | |
| CAGGCAGGAAAACAACACCA+TGG | + | chr4_3:14853850-14853869 | Msa0631670:intron | 50.0% | |
| GGTCCCATGATGACCATTCT+AGG | - | chr4_3:14854022-14854041 | None:intergenic | 50.0% | |
| TTCCGGCTCTCGAATCTATC+GGG | - | chr4_3:14854762-14854781 | None:intergenic | 50.0% | |
| CTTCCGGCTCTCGAATCTAT+CGG | - | chr4_3:14854763-14854782 | None:intergenic | 50.0% | |
| ACTGTGAAGGTAGAGCCTTC+CGG | - | chr4_3:14854779-14854798 | None:intergenic | 50.0% | |
| CTTCACAGTGGCGAGGTTTA+CGG | + | chr4_3:14854790-14854809 | Msa0631670:CDS | 50.0% | |
| TTCACAGTGGCGAGGTTTAC+GGG | + | chr4_3:14854791-14854810 | Msa0631670:CDS | 50.0% | |
| ACGGGATGACGTACTGTCAA+AGG | + | chr4_3:14854809-14854828 | Msa0631670:CDS | 50.0% | |
| !! | ACATGTGTCGGTGTCGTGTC+GGG | - | chr4_3:14851674-14851693 | None:intergenic | 55.0% |
| !! | CACATGTGTCGGTGTCGTGT+CGG | - | chr4_3:14851675-14851694 | None:intergenic | 55.0% |
| CGAGTCTTGCAGGAGAGTCT+AGG | - | chr4_3:14852597-14852616 | None:intergenic | 55.0% | |
| AGTCAGTGAGCGAGTCTTGC+AGG | - | chr4_3:14852607-14852626 | None:intergenic | 55.0% | |
| TCGCCTGCAGAATGGCTTAG+GGG | + | chr4_3:14852786-14852805 | Msa0631670:intron | 55.0% | |
| ATGGCTTAGGGGAATGCTGG+TGG | + | chr4_3:14852797-14852816 | Msa0631670:intron | 55.0% | |
| TGGCTTAGGGGAATGCTGGT+GGG | + | chr4_3:14852798-14852817 | Msa0631670:intron | 55.0% | |
| AAGCAAACAGTGGCGAGTGC+AGG | + | chr4_3:14854722-14854741 | Msa0631670:CDS | 55.0% | |
| CTCCCGATAGATTCGAGAGC+CGG | + | chr4_3:14854757-14854776 | Msa0631670:CDS | 55.0% | |
| CGATAGATTCGAGAGCCGGA+AGG | + | chr4_3:14854761-14854780 | Msa0631670:CDS | 55.0% | |
| GGAAGGCTCTACCTTCACAG+TGG | + | chr4_3:14854778-14854797 | Msa0631670:CDS | 55.0% | |
| CGTAAACCTCGCCACTGTGA+AGG | - | chr4_3:14854792-14854811 | None:intergenic | 55.0% | |
| AGGCAGATGGTTGGGAACAG+AGG | + | chr4_3:14855022-14855041 | Msa0631670:three_prime_UTR | 55.0% | |
| AGGCAGATGGTTGGGAACAG+AGG | + | chr4_3:14855022-14855041 | Msa0631670:three_prime_UTR | 55.0% | |
| AAGCGCGTGGGTACCCACAA+TGG | + | chr4_3:14850205-14850224 | Msa0631670:CDS | 60.0% | |
| TCGTGACCCTCAGGTTCGTG+TGG | + | chr4_3:14850309-14850328 | Msa0631670:intron | 60.0% | |
| CGTGACCCTCAGGTTCGTGT+GGG | + | chr4_3:14850310-14850329 | Msa0631670:intron | 60.0% | |
| AGGGTCCCACACGAACCTGA+GGG | - | chr4_3:14850318-14850337 | None:intergenic | 60.0% | |
| AAGGGTCCCACACGAACCTG+AGG | - | chr4_3:14850319-14850338 | None:intergenic | 60.0% | |
| GGCTTAGGGGAATGCTGGTG+GGG | + | chr4_3:14852799-14852818 | Msa0631670:intron | 60.0% | |
| CTCACTGCCAGCAAGTGCCA+TGG | - | chr4_3:14853092-14853111 | None:intergenic | 60.0% | |
| GCTCTACCTTCACAGTGGCG+AGG | + | chr4_3:14854783-14854802 | Msa0631670:CDS | 60.0% | |
| TCACGCGTCTCTCAAGCGCG+TGG | + | chr4_3:14850192-14850211 | Msa0631670:CDS | 65.0% | |
| CACGCGTCTCTCAAGCGCGT+GGG | + | chr4_3:14850193-14850212 | Msa0631670:CDS | 65.0% | |
| CGTTCGCACTCGTGACCCTC+AGG | + | chr4_3:14850300-14850319 | Msa0631670:CDS | 65.0% | |
| CATCGGGCCATGGCACTTGC+TGG | + | chr4_3:14853082-14853101 | Msa0631670:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 14849971 | 14855344 | 14849971 | ID=Msa0631670;Name=Msa0631670 |
| chr4_3 | mRNA | 14849971 | 14855344 | 14849971 | ID=Msa0631670-mRNA-1;Parent=Msa0631670;Name=Msa0631670-mRNA-1;_AED=0.04;_eAED=0.04;_QI=57|1|1|1|0.85|0.75|8|341|382 |
| chr4_3 | exon | 14849971 | 14850321 | 14849971 | ID=Msa0631670-mRNA-1:exon:4160;Parent=Msa0631670-mRNA-1 |
| chr4_3 | exon | 14851291 | 14851437 | 14851291 | ID=Msa0631670-mRNA-1:exon:4161;Parent=Msa0631670-mRNA-1 |
| chr4_3 | exon | 14852058 | 14852156 | 14852058 | ID=Msa0631670-mRNA-1:exon:4162;Parent=Msa0631670-mRNA-1 |
| chr4_3 | exon | 14852929 | 14853120 | 14852929 | ID=Msa0631670-mRNA-1:exon:4163;Parent=Msa0631670-mRNA-1 |
| chr4_3 | exon | 14853252 | 14853371 | 14853252 | ID=Msa0631670-mRNA-1:exon:4164;Parent=Msa0631670-mRNA-1 |
| chr4_3 | exon | 14854191 | 14854262 | 14854191 | ID=Msa0631670-mRNA-1:exon:4165;Parent=Msa0631670-mRNA-1 |
| chr4_3 | exon | 14854714 | 14855069 | 14854714 | ID=Msa0631670-mRNA-1:exon:4166;Parent=Msa0631670-mRNA-1 |
| chr4_3 | exon | 14855135 | 14855344 | 14855135 | ID=Msa0631670-mRNA-1:exon:4167;Parent=Msa0631670-mRNA-1 |
| chr4_3 | five_prime_UTR | 14849971 | 14850027 | 14849971 | ID=Msa0631670-mRNA-1:five_prime_utr;Parent=Msa0631670-mRNA-1 |
| chr4_3 | CDS | 14850028 | 14850321 | 14850028 | ID=Msa0631670-mRNA-1:cds;Parent=Msa0631670-mRNA-1 |
| chr4_3 | CDS | 14851291 | 14851437 | 14851291 | ID=Msa0631670-mRNA-1:cds;Parent=Msa0631670-mRNA-1 |
| chr4_3 | CDS | 14852058 | 14852156 | 14852058 | ID=Msa0631670-mRNA-1:cds;Parent=Msa0631670-mRNA-1 |
| chr4_3 | CDS | 14852929 | 14853120 | 14852929 | ID=Msa0631670-mRNA-1:cds;Parent=Msa0631670-mRNA-1 |
| chr4_3 | CDS | 14853252 | 14853371 | 14853252 | ID=Msa0631670-mRNA-1:cds;Parent=Msa0631670-mRNA-1 |
| chr4_3 | CDS | 14854191 | 14854262 | 14854191 | ID=Msa0631670-mRNA-1:cds;Parent=Msa0631670-mRNA-1 |
| chr4_3 | CDS | 14854714 | 14854938 | 14854714 | ID=Msa0631670-mRNA-1:cds;Parent=Msa0631670-mRNA-1 |
| chr4_3 | three_prime_UTR | 14854939 | 14855069 | 14854939 | ID=Msa0631670-mRNA-1:three_prime_utr;Parent=Msa0631670-mRNA-1 |
| chr4_3 | three_prime_UTR | 14855135 | 14855344 | 14855135 | ID=Msa0631670-mRNA-1:three_prime_utr;Parent=Msa0631670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
