Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591470 | XP_013454988.1 | 96.859 | 382 | 9 | 2 | 1 | 382 | 1 | 379 | 0.0 | 775 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591470 | sp|Q58DG1|MYG1_BOVIN | 51.026 | 341 | 155 | 6 | 47 | 380 | 31 | 366 | 4.43e-108 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0244780 | Msa0591470 | 0.800923 | 1.147404e-48 | -8.615850e-47 |
| Msa0526540 | Msa0591470 | 0.803736 | 3.023090e-49 | -8.615850e-47 |
| Msa0535360 | Msa0591470 | 0.938567 | 5.431269e-99 | -8.615850e-47 |
| Msa0576940 | Msa0591470 | 0.819865 | 9.279232e-53 | -8.615850e-47 |
| Msa0591470 | Msa0631670 | 0.938444 | 6.661641e-99 | -8.615850e-47 |
| Msa0591470 | Msa0677290 | 0.828949 | 6.762771e-55 | -8.615850e-47 |
| Msa0591470 | Msa1019260 | 0.803872 | 2.832713e-49 | -8.615850e-47 |
| Msa0591470 | Msa1104140 | 0.809100 | 2.235417e-50 | -8.615850e-47 |
| Msa0591470 | Msa1126510 | 0.800396 | 1.470155e-48 | -8.615850e-47 |
| Msa0591470 | Msa1166860 | 0.804639 | 1.961661e-49 | -8.615850e-47 |
| Msa0591470 | Msa1201650 | 0.826410 | 2.754763e-54 | -8.615850e-47 |
| Msa0591470 | Msa1218140 | 0.805903 | 1.066381e-49 | -8.615850e-47 |
| Msa0591470 | Msa1252190 | 0.812835 | 3.470767e-51 | -8.615850e-47 |
| Msa0591470 | Msa1254610 | 0.805633 | 1.214667e-49 | -8.615850e-47 |
| Msa0591470 | Msa1292830 | 0.808424 | 3.118357e-50 | -8.615850e-47 |
| Msa0591470 | Msa1363330 | 0.803643 | 3.160777e-49 | -8.615850e-47 |
| Msa0591470 | Msa1386600 | 0.803172 | 3.957258e-49 | -8.615850e-47 |
| Msa0591470 | Msa1406040 | 0.804925 | 1.709477e-49 | -8.615850e-47 |
| Msa0591470 | Msa1448690 | 0.804473 | 2.124490e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591470 | MtrunA17_Chr4g0009411 | 96.859 | 382 | 9 | 2 | 1 | 382 | 1 | 379 | 0.0 | 775 |
| Msa0591470 | MtrunA17_Chr3g0127371 | 64.583 | 336 | 117 | 1 | 46 | 381 | 11 | 344 | 4.19e-168 | 473 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0591470 | AT5G41970.1 | 68.490 | 384 | 108 | 4 | 1 | 382 | 1 | 373 | 0.0 | 554 |
| Msa0591470 | AT3G49320.1 | 70.695 | 331 | 97 | 0 | 50 | 380 | 22 | 352 | 0.0 | 508 |
| Msa0591470 | AT3G49320.2 | 67.660 | 235 | 76 | 0 | 50 | 284 | 22 | 256 | 5.85e-119 | 345 |
Find 106 sgRNAs with CRISPR-Local
Find 335 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATCAGTTTATGATCTTAAA+AGG | 0.188238 | 4_2:+15783855 | Msa0591470:three_prime_UTR |
| TGAGTATTATTCACATATTT+TGG | 0.193287 | 4_2:-15781525 | None:intergenic |
| ACTTGCTGGCAGTGAGTTTC+TGG | 0.203766 | 4_2:+15781641 | Msa0591470:CDS |
| AAACCTCCTCAAATCCTTTC+TGG | 0.205905 | 4_2:-15779908 | None:intergenic |
| AAATGTCCATTACGTATATT+TGG | 0.212868 | 4_2:+15780654 | Msa0591470:CDS |
| AATATACGTAATGGACATTT+TGG | 0.220571 | 4_2:-15780651 | None:intergenic |
| TGCCCACATCATATGACTTT+TGG | 0.245472 | 4_2:-15778515 | None:intergenic |
| GTGGAAATTGAATTGGAATT+TGG | 0.260877 | 4_2:-15778572 | None:intergenic |
| CCAAAGCACCTTCAAAAGTT+TGG | 0.266550 | 4_2:-15783422 | None:intergenic |
| CAGTGCTGGTCTTGTTTATA+AGG | 0.270739 | 4_2:+15779959 | Msa0591470:CDS |
| ACGTATATTTGGCTGTTTAC+AGG | 0.273800 | 4_2:+15780665 | Msa0591470:CDS |
| GAAATGTTCTGCAAAATTAA+TGG | 0.289764 | 4_2:-15783506 | None:intergenic |
| CTTCACAGTGGCGAGGTTTA+CGG | 0.296003 | 4_2:+15783325 | Msa0591470:CDS |
| GTCCATATGAGTGGATTTAT+TGG | 0.303964 | 4_2:+15783393 | Msa0591470:CDS |
| CTTGATGCTGTTCTTGATGT+TGG | 0.303993 | 4_2:+15779846 | Msa0591470:CDS |
| AGACAAACCGTTGATCCTTC+TGG | 0.314250 | 4_2:+15781863 | Msa0591470:CDS |
| TCAAAGGAATCTGGCATTCC+TGG | 0.319752 | 4_2:+15783360 | Msa0591470:CDS |
| TTCACAGTGGCGAGGTTTAC+GGG | 0.324078 | 4_2:+15783326 | Msa0591470:CDS |
| TGGGGAAGTGGAAATTGAAT+TGG | 0.337015 | 4_2:-15778579 | None:intergenic |
| CATCGGGCCATGGCACTTGC+TGG | 0.339183 | 4_2:+15781627 | Msa0591470:CDS |
| GAAGTGCTTCTGCTTGTACT+TGG | 0.381780 | 4_2:-15778599 | None:intergenic |
| AAGAGTAGGAAGGTTTAATC+TGG | 0.393648 | 4_2:+15781557 | Msa0591470:CDS |
| GGCTGTTTACAGGAGCTTCA+TGG | 0.397194 | 4_2:+15780675 | Msa0591470:CDS |
| TCCATCACAATTGACTTTGC+TGG | 0.397434 | 4_2:-15781827 | None:intergenic |
| TTAAAAGAACATAAATTGAA+TGG | 0.399835 | 4_2:-15783830 | None:intergenic |
| TCCACTAAGTTGAGCAGTGC+TGG | 0.401728 | 4_2:+15779945 | Msa0591470:CDS |
| ACCAGCACTGCTCAACTTAG+TGG | 0.402993 | 4_2:-15779946 | None:intergenic |
| GATTATAGCTAATGAACTTA+AGG | 0.428163 | 4_2:+15780615 | Msa0591470:CDS |
| CGCCAATAAATCCACTCATA+TGG | 0.432741 | 4_2:-15783395 | None:intergenic |
| ATGCTGTTCTTGATGTTGGA+GGG | 0.432940 | 4_2:+15779850 | Msa0591470:CDS |
| AAGTGCTTCTGCTTGTACTT+GGG | 0.437485 | 4_2:-15778598 | None:intergenic |
| TTGAATGGAACTAATAAAGT+AGG | 0.443264 | 4_2:-15783815 | None:intergenic |
| TCTTTCTCAGATGACTGATC+GGG | 0.445349 | 4_2:-15781591 | None:intergenic |
| CTTCACTTATTTGAGCTTGA+GGG | 0.445870 | 4_2:+15782734 | Msa0591470:CDS |
| CGTTCGAACTCGTGACCCTC+AGG | 0.446123 | 4_2:+15778798 | Msa0591470:CDS |
| TAGGAAGGTTTAATCTGGAT+TGG | 0.446800 | 4_2:+15781562 | Msa0591470:CDS |
| TTGAGAGAGGCGTGAGAAGA+AGG | 0.450079 | 4_2:-15778682 | None:intergenic |
| TCGTACAGAACATATTTGAT+TGG | 0.452757 | 4_2:-15782776 | None:intergenic |
| GACGTACTGTCAAAGGAATC+TGG | 0.453062 | 4_2:+15783351 | Msa0591470:CDS |
| TGAATGGAACTAATAAAGTA+GGG | 0.457209 | 4_2:-15783814 | None:intergenic |
| TTCTTTCTCAGATGACTGAT+CGG | 0.468555 | 4_2:-15781592 | None:intergenic |
| AAGCAAACAGTGGCGAGTGC+AGG | 0.469480 | 4_2:+15783257 | Msa0591470:CDS |
| CTTCCGGCTCTCGAATCTAT+CGG | 0.470405 | 4_2:-15783295 | None:intergenic |
| TTGATTGATTCCATTGTCTA+CGG | 0.487412 | 4_2:-15781484 | None:intergenic |
| TTGTAACAAGTCAAACACTA+TGG | 0.488476 | 4_2:+15783482 | Msa0591470:three_prime_UTR |
| GATGCTGTTCTTGATGTTGG+AGG | 0.499216 | 4_2:+15779849 | Msa0591470:CDS |
| GGTGATGATCATAACGATCT+CGG | 0.504124 | 4_2:-15779887 | None:intergenic |
| TTCCATTGTGATGAAGCTCT+TGG | 0.504290 | 4_2:+15778730 | Msa0591470:CDS |
| AAAACTAAAATTTCTCCAGA+AGG | 0.507002 | 4_2:-15781878 | None:intergenic |
| AAGAAAATGAAGCATTTCAT+CGG | 0.507024 | 4_2:+15781610 | Msa0591470:CDS |
| AGAAAATGAAGCATTTCATC+GGG | 0.507874 | 4_2:+15781611 | Msa0591470:CDS |
| TCTGCTTGTACTTGGGGAAG+TGG | 0.508698 | 4_2:-15778591 | None:intergenic |
| ACAATGGAAGCTTCCATTGT+GGG | 0.510150 | 4_2:-15778716 | None:intergenic |
| TGTCTAACGCTAAAACAGCT+AGG | 0.511369 | 4_2:+15778641 | Msa0591470:CDS |
| TTCCGGCTCTCGAATCTATC+GGG | 0.512998 | 4_2:-15783294 | None:intergenic |
| AAACAGCCAAATATACGTAA+TGG | 0.515908 | 4_2:-15780660 | None:intergenic |
| GTCTAACGCTAAAACAGCTA+GGG | 0.518681 | 4_2:+15778642 | Msa0591470:CDS |
| TACAGAACATATTTGATTGG+TGG | 0.524993 | 4_2:-15782773 | None:intergenic |
| TGCTGTTCTTGATGTTGGAG+GGG | 0.529822 | 4_2:+15779851 | Msa0591470:CDS |
| AGTGCTTCTGCTTGTACTTG+GGG | 0.532619 | 4_2:-15778597 | None:intergenic |
| TCATCACCAGAAAGGATTTG+AGG | 0.532672 | 4_2:+15779902 | Msa0591470:CDS |
| TGTGATTCTGTAGGTGTTGG+AGG | 0.532949 | 4_2:+15779821 | Msa0591470:intron |
| AATCCAAAAGTCATATGATG+TGG | 0.534140 | 4_2:+15778512 | Msa0591470:exon |
| GCTTCACTTATTTGAGCTTG+AGG | 0.539094 | 4_2:+15782733 | Msa0591470:CDS |
| CATTAAAGAGGCAGATGGAT+GGG | 0.542297 | 4_2:+15783549 | Msa0591470:three_prime_UTR |
| ACAGAACATATTTGATTGGT+GGG | 0.547994 | 4_2:-15782772 | None:intergenic |
| AACGGTTTGTCTAGCCGCAA+TGG | 0.551955 | 4_2:-15781852 | None:intergenic |
| CTCCCGATAGATTCGAGAGC+CGG | 0.553624 | 4_2:+15783292 | Msa0591470:CDS |
| CGTTATGATCATCACCAGAA+AGG | 0.554112 | 4_2:+15779894 | Msa0591470:CDS |
| ACTGTGAAGGTAGAGCCTTC+CGG | 0.555569 | 4_2:-15783311 | None:intergenic |
| GCATTAAAGAGGCAGATGGA+TGG | 0.555815 | 4_2:+15783548 | Msa0591470:three_prime_UTR |
| TGCTTTGAAGATGTAGGCAA+AGG | 0.556037 | 4_2:+15783458 | Msa0591470:exon |
| ATTAAACCTTCCTACTCTTG+AGG | 0.556617 | 4_2:-15781553 | None:intergenic |
| CATATGAGTGGATTTATTGG+CGG | 0.560355 | 4_2:+15783396 | Msa0591470:CDS |
| ACGGGATGACGTACTGTCAA+AGG | 0.561567 | 4_2:+15783344 | Msa0591470:CDS |
| GTGATGATCATAACGATCTC+GGG | 0.561931 | 4_2:-15779886 | None:intergenic |
| CACGCCTCTCTCAAGCGCGT+TGG | 0.562567 | 4_2:+15778691 | Msa0591470:CDS |
| GATTGCATTAAAGAGGCAGA+TGG | 0.563253 | 4_2:+15783544 | Msa0591470:three_prime_UTR |
| TGAAGCATTTCATCGGGCCA+TGG | 0.565145 | 4_2:+15781617 | Msa0591470:CDS |
| GCAATTGATGCCGTAGACAA+TGG | 0.565550 | 4_2:+15781474 | Msa0591470:CDS |
| TGATCATAACGATCTCGGGC+AGG | 0.569953 | 4_2:-15779882 | None:intergenic |
| TTCACTTATTTGAGCTTGAG+GGG | 0.571793 | 4_2:+15782735 | Msa0591470:CDS |
| CGTAAACCTCGCCACTGTGA+AGG | 0.574929 | 4_2:-15783324 | None:intergenic |
| AAAAGCTGCTTTGAAGATGT+AGG | 0.585064 | 4_2:+15783452 | Msa0591470:CDS |
| ATTTATCCTCAAGAGTAGGA+AGG | 0.585427 | 4_2:+15781547 | Msa0591470:CDS |
| ACCAGCAAAGTCAATTGTGA+TGG | 0.591652 | 4_2:+15781826 | Msa0591470:CDS |
| GGTACCAACGCGCTTGAGAG+AGG | 0.591985 | 4_2:-15778695 | None:intergenic |
| AAGCGCGTTGGTACCCACAA+TGG | 0.593875 | 4_2:+15778703 | Msa0591470:CDS |
| ATCCAAAAGTCATATGATGT+GGG | 0.594080 | 4_2:+15778513 | Msa0591470:exon |
| AATTTCTCCAGAAGGATCAA+CGG | 0.595122 | 4_2:-15781870 | None:intergenic |
| GTGATTCTGTAGGTGTTGGA+GGG | 0.600860 | 4_2:+15779822 | Msa0591470:intron |
| CTCACTGCCAGCAAGTGCCA+TGG | 0.603288 | 4_2:-15781634 | None:intergenic |
| CACAATGGAAGCTTCCATTG+TGG | 0.605935 | 4_2:-15778717 | None:intergenic |
| AGGCAGATGGATGGGAACAG+AGG | 0.607315 | 4_2:+15783557 | Msa0591470:three_prime_UTR |
| TCACTTATTTGAGCTTGAGG+GGG | 0.611669 | 4_2:+15782736 | Msa0591470:CDS |
| ACTCATTTATCCTCAAGAGT+AGG | 0.617854 | 4_2:+15781543 | Msa0591470:CDS |
| CGATAGATTCGAGAGCCGGA+AGG | 0.619380 | 4_2:+15783296 | Msa0591470:CDS |
| TCACCAGAAAGGATTTGAGG+AGG | 0.629775 | 4_2:+15779905 | Msa0591470:CDS |
| AACCAAGAGCTTCATCACAA+TGG | 0.641621 | 4_2:-15778732 | None:intergenic |
| GCTCTACCTTCACAGTGGCG+AGG | 0.646376 | 4_2:+15783318 | Msa0591470:CDS |
| GAATGGAACTAATAAAGTAG+GGG | 0.653535 | 4_2:-15783813 | None:intergenic |
| AATTGTGATGGAGACCATTG+CGG | 0.675025 | 4_2:+15781838 | Msa0591470:CDS |
| TGTTTACAGGAGCTTCATGG+AGG | 0.713991 | 4_2:+15780678 | Msa0591470:CDS |
| AATCAAATATGTTCTGTACG+AGG | 0.739632 | 4_2:+15782778 | Msa0591470:CDS |
| AGGATGAGAGAAGCAAACAG+TGG | 0.743666 | 4_2:+15783247 | Msa0591470:intron |
| GGAAGGCTCTACCTTCACAG+TGG | 0.763082 | 4_2:+15783313 | Msa0591470:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTAATGATATATTGT+TGG | + | chr4_2:15779663-15779682 | Msa0591470:intron | 10.0% |
| !!! | TTTTTTAATGATATATTGTT+GGG | + | chr4_2:15779664-15779683 | Msa0591470:intron | 10.0% |
| !!! | ATGAAGTGTTTATTTTTATT+TGG | + | chr4_2:15778891-15778910 | Msa0591470:intron | 15.0% |
| !! | TATGCAAAATATAATATGAA+AGG | + | chr4_2:15780367-15780386 | Msa0591470:intron | 15.0% |
| !!! | ATATAATATGAAAGGTTTTA+AGG | + | chr4_2:15780375-15780394 | Msa0591470:intron | 15.0% |
| !!! | TATAATATGAAAGGTTTTAA+GGG | + | chr4_2:15780376-15780395 | Msa0591470:intron | 15.0% |
| !!! | TTTTAATTAGATTTTCCATT+TGG | - | chr4_2:15780443-15780462 | None:intergenic | 15.0% |
| !! | AAAGAATATAAAAACAATGA+AGG | - | chr4_2:15781224-15781243 | None:intergenic | 15.0% |
| !! | ATATTCTTTATTGAATGATT+TGG | + | chr4_2:15781235-15781254 | Msa0591470:intron | 15.0% |
| !! | TATTCTTTATTGAATGATTT+GGG | + | chr4_2:15781236-15781255 | Msa0591470:intron | 15.0% |
| !! | ATATTCTTGTTAATTATTTC+AGG | + | chr4_2:15781452-15781471 | Msa0591470:intron | 15.0% |
| !!! | TTCATTTAAAATTTTGAGTT+AGG | + | chr4_2:15781979-15781998 | Msa0591470:intron | 15.0% |
| !!! | TTTTTTGTTGCAAATTTTAT+TGG | + | chr4_2:15782104-15782123 | Msa0591470:intron | 15.0% |
| !!! | AGAATCTTTTAATTTTAACA+GGG | - | chr4_2:15782485-15782504 | None:intergenic | 15.0% |
| !!! | TAGAATCTTTTAATTTTAAC+AGG | - | chr4_2:15782486-15782505 | None:intergenic | 15.0% |
| !! | ATTAAAAGATTCTAAATCTA+TGG | + | chr4_2:15782492-15782511 | Msa0591470:intron | 15.0% |
| !! | TTGTAATTAACATACTTTAT+TGG | + | chr4_2:15782954-15782973 | Msa0591470:intron | 15.0% |
| !! | AAAACAAAAAATTCATGTTA+TGG | - | chr4_2:15783722-15783741 | None:intergenic | 15.0% |
| !! | TTAAAAGAACATAAATTGAA+TGG | - | chr4_2:15783833-15783852 | None:intergenic | 15.0% |
| !!! | TTTGTTTCATTATTTGTTGT+TGG | + | chr4_2:15778915-15778934 | Msa0591470:intron | 20.0% |
| !!! | TTGTTTCATTATTTGTTGTT+GGG | + | chr4_2:15778916-15778935 | Msa0591470:intron | 20.0% |
| !!! | AATAAAAACTACACTTTTGA+AGG | - | chr4_2:15779097-15779116 | None:intergenic | 20.0% |
| !!! | TTCAAAAGTGTAGTTTTTAT+TGG | + | chr4_2:15779096-15779115 | Msa0591470:intron | 20.0% |
| !!! | GAAATATGGTATTTTTTGTT+TGG | + | chr4_2:15779228-15779247 | Msa0591470:intron | 20.0% |
| !!! | TTATTTTAGATTGATTGTGA+TGG | + | chr4_2:15779270-15779289 | Msa0591470:intron | 20.0% |
| !! | ATAAGAGAAACTATTAAGAA+AGG | + | chr4_2:15779333-15779352 | Msa0591470:intron | 20.0% |
| !!! | TATTTTGTGCATTTGTTATT+TGG | + | chr4_2:15779590-15779609 | Msa0591470:intron | 20.0% |
| !!! | GAAGTTTTTTTATTCTAGTT+TGG | + | chr4_2:15780054-15780073 | Msa0591470:intron | 20.0% |
| !! | TCATATTCTCAAATTATTAC+TGG | + | chr4_2:15780252-15780271 | Msa0591470:intron | 20.0% |
| !! | TAAAAACATCCAAAAACAAT+TGG | - | chr4_2:15780525-15780544 | None:intergenic | 20.0% |
| !!! | TGAGTATTATTCACATATTT+TGG | - | chr4_2:15781528-15781547 | None:intergenic | 20.0% |
| !! | AAATGGAGAAATTTAGAAAA+CGG | - | chr4_2:15782616-15782635 | None:intergenic | 20.0% |
| !!! | TCCATTTCTTTTATTTTCTT+TGG | + | chr4_2:15782629-15782648 | Msa0591470:intron | 20.0% |
| !!! | CCATTTCTTTTATTTTCTTT+GGG | + | chr4_2:15782630-15782649 | Msa0591470:intron | 20.0% |
| !!! | ATGTTGATAAATGTTTTAGA+AGG | + | chr4_2:15782871-15782890 | Msa0591470:intron | 20.0% |
| !! | ATGATGAAAAAATCCAATAT+AGG | + | chr4_2:15782990-15783009 | Msa0591470:intron | 20.0% |
| !! | TGATGAAAAAATCCAATATA+GGG | + | chr4_2:15782991-15783010 | Msa0591470:intron | 20.0% |
| !! | GAACATAAATCAAAGATATA+CGG | - | chr4_2:15783175-15783194 | None:intergenic | 20.0% |
| !! | CTTAAAAAAGTTAATAACTC+GGG | - | chr4_2:15783602-15783621 | None:intergenic | 20.0% |
| !! | CCTTAAAAAAGTTAATAACT+CGG | - | chr4_2:15783603-15783622 | None:intergenic | 20.0% |
| !! | TCTTTATGATAAAATGTCAT+TGG | + | chr4_2:15783672-15783691 | Msa0591470:intron | 20.0% |
| !! | AATCAGTTTATGATCTTAAA+AGG | + | chr4_2:15783855-15783874 | Msa0591470:three_prime_UTR | 20.0% |
| ! | AAAAAATCTCAGAAACCAAA+GGG | - | chr4_2:15778848-15778867 | None:intergenic | 25.0% |
| ! | AAAAAAATCTCAGAAACCAA+AGG | - | chr4_2:15778849-15778868 | None:intergenic | 25.0% |
| ! | TTGTTTGCTTGATGAAAAAA+AGG | + | chr4_2:15778965-15778984 | Msa0591470:intron | 25.0% |
| !!! | TGAAGAGTTGTGTTTTTTAT+TGG | + | chr4_2:15779012-15779031 | Msa0591470:intron | 25.0% |
| !!! | ATTATTTGACTTGATGTGAA+TGG | + | chr4_2:15779190-15779209 | Msa0591470:intron | 25.0% |
| !!! | TAATGGGTTTGATAGAAATA+TGG | + | chr4_2:15779365-15779384 | Msa0591470:intron | 25.0% |
| ! | AAACAAACTAATATCTCACT+GGG | - | chr4_2:15779513-15779532 | None:intergenic | 25.0% |
| ! | TAAACAAACTAATATCTCAC+TGG | - | chr4_2:15779514-15779533 | None:intergenic | 25.0% |
| !!! | AGTGAGATATTAGTTTGTTT+AGG | + | chr4_2:15779513-15779532 | Msa0591470:intron | 25.0% |
| ! | AAACTAAATTGTGATTCTGT+AGG | + | chr4_2:15779812-15779831 | Msa0591470:intron | 25.0% |
| !! | TAGTTTGGTTCAATATGAAA+GGG | + | chr4_2:15780069-15780088 | Msa0591470:intron | 25.0% |
| !!! | AAAGGTTTTAAGGGTAATAA+AGG | + | chr4_2:15780385-15780404 | Msa0591470:intron | 25.0% |
| !! | GTACAATTACCAATTGTTTT+TGG | + | chr4_2:15780513-15780532 | Msa0591470:intron | 25.0% |
| !!! | TCTACTATGTCTTCTTTTTT+CGG | + | chr4_2:15780571-15780590 | Msa0591470:intron | 25.0% |
| ! | GATTATAGCTAATGAACTTA+AGG | + | chr4_2:15780615-15780634 | Msa0591470:CDS | 25.0% |
| !!! | AATATACGTAATGGACATTT+TGG | - | chr4_2:15780654-15780673 | None:intergenic | 25.0% |
| ! | AAATGTCCATTACGTATATT+TGG | + | chr4_2:15780654-15780673 | Msa0591470:CDS | 25.0% |
| !!! | TTTTTTCTGCGCATTTAAAA+CGG | + | chr4_2:15780773-15780792 | Msa0591470:intron | 25.0% |
| ! | ACATTGATATATCTCAATCT+TGG | + | chr4_2:15780811-15780830 | Msa0591470:intron | 25.0% |
| ! | TTTCTCTTGCAATAATAACA+GGG | + | chr4_2:15780902-15780921 | Msa0591470:intron | 25.0% |
| !!! | AGTTAGCTTAGCTTTATATA+GGG | - | chr4_2:15780935-15780954 | None:intergenic | 25.0% |
| ! | AAATTAAATCCAAAAACACG+TGG | - | chr4_2:15781306-15781325 | None:intergenic | 25.0% |
| !!! | GTATTATTCACATATTTTGG+AGG | - | chr4_2:15781525-15781544 | None:intergenic | 25.0% |
| !! | AAGAAAATGAAGCATTTCAT+CGG | + | chr4_2:15781610-15781629 | Msa0591470:CDS | 25.0% |
| ! | TCATTTCCTTGATATTCTTA+GGG | - | chr4_2:15781704-15781723 | None:intergenic | 25.0% |
| ! | AAACAATGAAAAGGTAAAAC+AGG | - | chr4_2:15781749-15781768 | None:intergenic | 25.0% |
| ! | AAAACTAAAATTTCTCCAGA+AGG | - | chr4_2:15781881-15781900 | None:intergenic | 25.0% |
| ! | TCATACAAAATGTTAGAAGA+GGG | - | chr4_2:15781941-15781960 | None:intergenic | 25.0% |
| ! | AAACTTCAAATCATGATTTC+AGG | - | chr4_2:15782155-15782174 | None:intergenic | 25.0% |
| !! | TACAAATTTTTCATTCAAGC+TGG | + | chr4_2:15782244-15782263 | Msa0591470:intron | 25.0% |
| ! | AATAATTATAGAACTCTCTG+TGG | - | chr4_2:15782363-15782382 | None:intergenic | 25.0% |
| ! | CTATAATTATTGCAGTAATC+AGG | + | chr4_2:15782372-15782391 | Msa0591470:intron | 25.0% |
| ! | GTTCCTATATAATAGAACAT+TGG | - | chr4_2:15782580-15782599 | None:intergenic | 25.0% |
| ! | AATGGAGAAATTTAGAAAAC+GGG | - | chr4_2:15782615-15782634 | None:intergenic | 25.0% |
| ! | CCCAAAGAAAATAAAAGAAA+TGG | - | chr4_2:15782633-15782652 | None:intergenic | 25.0% |
| ! | GTATGTTAATTACAACAATC+TGG | - | chr4_2:15782949-15782968 | None:intergenic | 25.0% |
| ! | GAAATGTTCTGCAAAATTAA+TGG | - | chr4_2:15783509-15783528 | None:intergenic | 25.0% |
| !! | GTTTTATGATTGCATTAAAG+AGG | + | chr4_2:15783537-15783556 | Msa0591470:three_prime_UTR | 25.0% |
| !!! | CCGAGTTATTAACTTTTTTA+AGG | + | chr4_2:15783600-15783619 | Msa0591470:three_prime_UTR | 25.0% |
| ! | CTTTCTTCACTAATGTATTA+TGG | + | chr4_2:15783645-15783664 | Msa0591470:intron | 25.0% |
| !!! | TCATTGGTTTTTGTTTAATC+AGG | + | chr4_2:15783688-15783707 | Msa0591470:intron | 25.0% |
| ! | TGAATGGAACTAATAAAGTA+GGG | - | chr4_2:15783817-15783836 | None:intergenic | 25.0% |
| ! | TTGAATGGAACTAATAAAGT+AGG | - | chr4_2:15783818-15783837 | None:intergenic | 25.0% |
| ! | AAAACTAGAGGAGAGATTTT+AGG | + | chr4_2:15778473-15778492 | Msa0591470:five_prime_UTR | 30.0% |
| AATCCAAAAGTCATATGATG+TGG | + | chr4_2:15778512-15778531 | Msa0591470:exon | 30.0% | |
| ATCCAAAAGTCATATGATGT+GGG | + | chr4_2:15778513-15778532 | Msa0591470:exon | 30.0% | |
| GTGGAAATTGAATTGGAATT+TGG | - | chr4_2:15778575-15778594 | None:intergenic | 30.0% | |
| AAAAATCTCAGAAACCAAAG+GGG | - | chr4_2:15778847-15778866 | None:intergenic | 30.0% | |
| ! | GGAATTCTGATACTTTTGTT+AGG | + | chr4_2:15779291-15779310 | Msa0591470:intron | 30.0% |
| AAGAAAGGTCTAGTGATTAA+TGG | + | chr4_2:15779348-15779367 | Msa0591470:intron | 30.0% | |
| AGAAAGGTCTAGTGATTAAT+GGG | + | chr4_2:15779349-15779368 | Msa0591470:intron | 30.0% | |
| TGGTATGTGATAGAATGATA+TGG | + | chr4_2:15779385-15779404 | Msa0591470:intron | 30.0% | |
| AAACCTTATTCCACTAAGTA+GGG | - | chr4_2:15779434-15779453 | None:intergenic | 30.0% | |
| !! | GAGATATTAGTTTGTTTAGG+AGG | + | chr4_2:15779516-15779535 | Msa0591470:intron | 30.0% |
| TAATGATATATTGTTGGGAG+AGG | + | chr4_2:15779669-15779688 | Msa0591470:intron | 30.0% | |
| TAACTACCAAAAAGAAACAC+CGG | - | chr4_2:15779720-15779739 | None:intergenic | 30.0% | |
| TGTTTAGCTATTGAATGAAG+CGG | + | chr4_2:15779747-15779766 | Msa0591470:intron | 30.0% | |
| ! | ACCTATATTTTATGAAGTGC+TGG | + | chr4_2:15780007-15780026 | Msa0591470:intron | 30.0% |
| ACCAGCACTTCATAAAATAT+AGG | - | chr4_2:15780011-15780030 | None:intergenic | 30.0% | |
| ! | CTAGTTTGGTTCAATATGAA+AGG | + | chr4_2:15780068-15780087 | Msa0591470:intron | 30.0% |
| ATGAAAGCAAAAATTGAGTG+AGG | - | chr4_2:15780129-15780148 | None:intergenic | 30.0% | |
| ! | TTTTTGCTTTCATGCAATAC+TGG | + | chr4_2:15780136-15780155 | Msa0591470:intron | 30.0% |
| ! | TTTTGCTTTCATGCAATACT+GGG | + | chr4_2:15780137-15780156 | Msa0591470:intron | 30.0% |
| TTGAATGTAATCACATGTGT+CGG | - | chr4_2:15780229-15780248 | None:intergenic | 30.0% | |
| ATTCACACTGTTTGTTTCAA+AGG | - | chr4_2:15780481-15780500 | None:intergenic | 30.0% | |
| AAACAGCCAAATATACGTAA+TGG | - | chr4_2:15780663-15780682 | None:intergenic | 30.0% | |
| AAACATTGTAGTATCTTGCT+TGG | + | chr4_2:15780745-15780764 | Msa0591470:intron | 30.0% | |
| TATATCAATGTACCAAGCAA+GGG | - | chr4_2:15780802-15780821 | None:intergenic | 30.0% | |
| ATATATCAATGTACCAAGCA+AGG | - | chr4_2:15780803-15780822 | None:intergenic | 30.0% | |
| ATGAAAACAGAGTAAAGACA+GGG | + | chr4_2:15780839-15780858 | Msa0591470:intron | 30.0% | |
| CTTTCTCTTGCAATAATAAC+AGG | + | chr4_2:15780901-15780920 | Msa0591470:intron | 30.0% | |
| !! | GAGTTAGCTTAGCTTTATAT+AGG | - | chr4_2:15780936-15780955 | None:intergenic | 30.0% |
| ! | TAGTTGACTCACTTAACTAA+CGG | + | chr4_2:15780988-15781007 | Msa0591470:intron | 30.0% |
| ! | TTGATTGATTCCATTGTCTA+CGG | - | chr4_2:15781487-15781506 | None:intergenic | 30.0% |
| ! | AGAAAATGAAGCATTTCATC+GGG | + | chr4_2:15781611-15781630 | Msa0591470:CDS | 30.0% |
| CTCATTTCCTTGATATTCTT+AGG | - | chr4_2:15781705-15781724 | None:intergenic | 30.0% | |
| CTAAGAATATCAAGGAAATG+AGG | + | chr4_2:15781703-15781722 | Msa0591470:intron | 30.0% | |
| TCGTTCAGAAAACAATGAAA+AGG | - | chr4_2:15781758-15781777 | None:intergenic | 30.0% | |
| GTCATACAAAATGTTAGAAG+AGG | - | chr4_2:15781942-15781961 | None:intergenic | 30.0% | |
| CAAGCATCAAATCATGATTT+CGG | - | chr4_2:15782025-15782044 | None:intergenic | 30.0% | |
| TTGAAGTTTGAACAAGTACT+TGG | + | chr4_2:15782166-15782185 | Msa0591470:intron | 30.0% | |
| ! | AAATTTTTCATTCAAGCTGG+TGG | + | chr4_2:15782247-15782266 | Msa0591470:intron | 30.0% |
| AGTAACAGTTATCATCTAGT+CGG | - | chr4_2:15782310-15782329 | None:intergenic | 30.0% | |
| AATTATTGCAGTAATCAGGT+AGG | + | chr4_2:15782376-15782395 | Msa0591470:intron | 30.0% | |
| ! | TTTTTAACACATAGCATCCA+TGG | - | chr4_2:15782411-15782430 | None:intergenic | 30.0% |
| TGTTAAAAACGTCACTGTAA+TGG | + | chr4_2:15782422-15782441 | Msa0591470:intron | 30.0% | |
| GGACCAATGTTCTATTATAT+AGG | + | chr4_2:15782574-15782593 | Msa0591470:intron | 30.0% | |
| TTTGGGTATTACTGTATTAG+CGG | + | chr4_2:15782647-15782666 | Msa0591470:intron | 30.0% | |
| !!! | ACTGATTTTATTTTCTGCAG+TGG | + | chr4_2:15782708-15782727 | Msa0591470:intron | 30.0% |
| ACAGAACATATTTGATTGGT+GGG | - | chr4_2:15782775-15782794 | None:intergenic | 30.0% | |
| TACAGAACATATTTGATTGG+TGG | - | chr4_2:15782776-15782795 | None:intergenic | 30.0% | |
| TCGTACAGAACATATTTGAT+TGG | - | chr4_2:15782779-15782798 | None:intergenic | 30.0% | |
| AATCAAATATGTTCTGTACG+AGG | + | chr4_2:15782778-15782797 | Msa0591470:CDS | 30.0% | |
| !! | AAAACAAAAGCACCCTATAT+TGG | - | chr4_2:15783006-15783025 | None:intergenic | 30.0% |
| TCACAACAAAACAACCTTAA+TGG | - | chr4_2:15783146-15783165 | None:intergenic | 30.0% | |
| TTGTAACAAGTCAAACACTA+TGG | + | chr4_2:15783482-15783501 | Msa0591470:three_prime_UTR | 30.0% | |
| GAATGGAACTAATAAAGTAG+GGG | - | chr4_2:15783816-15783835 | None:intergenic | 30.0% | |
| AAAATCTCAGAAACCAAAGG+GGG | - | chr4_2:15778846-15778865 | None:intergenic | 35.0% | |
| !! | GTTTTGTTGCTGAGGAAATA+TGG | + | chr4_2:15779214-15779233 | Msa0591470:intron | 35.0% |
| CAAACCTTATTCCACTAAGT+AGG | - | chr4_2:15779435-15779454 | None:intergenic | 35.0% | |
| CTACTTAGTGGAATAAGGTT+TGG | + | chr4_2:15779433-15779452 | Msa0591470:intron | 35.0% | |
| ATTTGGATGCTGAGAAAATG+TGG | + | chr4_2:15779607-15779626 | Msa0591470:intron | 35.0% | |
| ATGCTGAGAAAATGTGGATA+AGG | + | chr4_2:15779613-15779632 | Msa0591470:intron | 35.0% | |
| TGCTGAGAAAATGTGGATAA+GGG | + | chr4_2:15779614-15779633 | Msa0591470:intron | 35.0% | |
| !!! | TGATGTTTTTAGCTTGCTAC+CGG | + | chr4_2:15779698-15779717 | Msa0591470:intron | 35.0% |
| AATTGTGATTCTGTAGGTGT+TGG | + | chr4_2:15779818-15779837 | Msa0591470:intron | 35.0% | |
| ! | AAAGGATTTGAGGAGGTTTT+TGG | + | chr4_2:15779912-15779931 | Msa0591470:CDS | 35.0% |
| ! | AAGGATTTGAGGAGGTTTTT+GGG | + | chr4_2:15779913-15779932 | Msa0591470:CDS | 35.0% |
| ! | TTTGGTTCAATATGAAAGGG+AGG | + | chr4_2:15780072-15780091 | Msa0591470:intron | 35.0% |
| TTGGTTCAATATGAAAGGGA+GGG | + | chr4_2:15780073-15780092 | Msa0591470:intron | 35.0% | |
| TATGAAAGGGAGGGTAATAA+AGG | + | chr4_2:15780082-15780101 | Msa0591470:intron | 35.0% | |
| ATGAAAGGGAGGGTAATAAA+GGG | + | chr4_2:15780083-15780102 | Msa0591470:intron | 35.0% | |
| TGAAACACTAACATAGACAC+CGG | - | chr4_2:15780300-15780319 | None:intergenic | 35.0% | |
| TTTCCATTTGGTTAGAAGAG+AGG | - | chr4_2:15780431-15780450 | None:intergenic | 35.0% | |
| ACACTGTTTGTTTCAAAGGA+GGG | - | chr4_2:15780477-15780496 | None:intergenic | 35.0% | |
| TGGTAATTGTACCAAAACAG+AGG | - | chr4_2:15780505-15780524 | None:intergenic | 35.0% | |
| !! | TTTTTCGGTGTGTAGCATTT+TGG | + | chr4_2:15780586-15780605 | Msa0591470:intron | 35.0% |
| ACGTATATTTGGCTGTTTAC+AGG | + | chr4_2:15780665-15780684 | Msa0591470:CDS | 35.0% | |
| CATGAAAACAGAGTAAAGAC+AGG | + | chr4_2:15780838-15780857 | Msa0591470:intron | 35.0% | |
| TAGGTTCTCTCAGAATATCT+TGG | - | chr4_2:15781123-15781142 | None:intergenic | 35.0% | |
| ATTCTCTGTCTCACAACATA+AGG | - | chr4_2:15781277-15781296 | None:intergenic | 35.0% | |
| ! | AATTGAGAACCACGTGTTTT+TGG | + | chr4_2:15781294-15781313 | Msa0591470:intron | 35.0% |
| !! | TATTCACATATTTTGGAGGC+TGG | - | chr4_2:15781521-15781540 | None:intergenic | 35.0% |
| ACTCATTTATCCTCAAGAGT+AGG | + | chr4_2:15781543-15781562 | Msa0591470:CDS | 35.0% | |
| ATTTATCCTCAAGAGTAGGA+AGG | + | chr4_2:15781547-15781566 | Msa0591470:CDS | 35.0% | |
| ATTAAACCTTCCTACTCTTG+AGG | - | chr4_2:15781556-15781575 | None:intergenic | 35.0% | |
| AAGAGTAGGAAGGTTTAATC+TGG | + | chr4_2:15781557-15781576 | Msa0591470:CDS | 35.0% | |
| TAGGAAGGTTTAATCTGGAT+TGG | + | chr4_2:15781562-15781581 | Msa0591470:CDS | 35.0% | |
| TTCTTTCTCAGATGACTGAT+CGG | - | chr4_2:15781595-15781614 | None:intergenic | 35.0% | |
| TCTGAACCCTAAGAATATCA+AGG | + | chr4_2:15781695-15781714 | Msa0591470:intron | 35.0% | |
| AATTTCTCCAGAAGGATCAA+CGG | - | chr4_2:15781873-15781892 | None:intergenic | 35.0% | |
| TACAAAATGTTAGAAGAGGG+AGG | - | chr4_2:15781938-15781957 | None:intergenic | 35.0% | |
| GTACCAATATGACTATAGAC+AGG | + | chr4_2:15782514-15782533 | Msa0591470:intron | 35.0% | |
| CAACCTGTCTATAGTCATAT+TGG | - | chr4_2:15782520-15782539 | None:intergenic | 35.0% | |
| CTTCACTTATTTGAGCTTGA+GGG | + | chr4_2:15782734-15782753 | Msa0591470:CDS | 35.0% | |
| TTCACTTATTTGAGCTTGAG+GGG | + | chr4_2:15782735-15782754 | Msa0591470:CDS | 35.0% | |
| TTCTCAAGTAGTCTCCAATA+GGG | + | chr4_2:15782847-15782866 | Msa0591470:intron | 35.0% | |
| CATTTATCAACATGCCCTAT+TGG | - | chr4_2:15782864-15782883 | None:intergenic | 35.0% | |
| !!! | GGCTTTTATTGGCTTTGTTT+TGG | + | chr4_2:15782906-15782925 | Msa0591470:intron | 35.0% |
| ! | ATTTTCCAACTGCACCATTA+AGG | + | chr4_2:15783129-15783148 | Msa0591470:intron | 35.0% |
| ! | CTTTTCTCAATATTCTCCAC+AGG | + | chr4_2:15783227-15783246 | Msa0591470:intron | 35.0% |
| ATATGGACAAAAACACAACC+AGG | - | chr4_2:15783381-15783400 | None:intergenic | 35.0% | |
| !! | TGTGTTTTTGTCCATATGAG+TGG | + | chr4_2:15783384-15783403 | Msa0591470:CDS | 35.0% |
| ! | GTCCATATGAGTGGATTTAT+TGG | + | chr4_2:15783393-15783412 | Msa0591470:CDS | 35.0% |
| ! | CATATGAGTGGATTTATTGG+CGG | + | chr4_2:15783396-15783415 | Msa0591470:CDS | 35.0% |
| !! | AAAAGCTGCTTTGAAGATGT+AGG | + | chr4_2:15783452-15783471 | Msa0591470:CDS | 35.0% |
| ! | TGCCCACATCATATGACTTT+TGG | - | chr4_2:15778518-15778537 | None:intergenic | 40.0% |
| TGGGGAAGTGGAAATTGAAT+TGG | - | chr4_2:15778582-15778601 | None:intergenic | 40.0% | |
| AAGTGCTTCTGCTTGTACTT+GGG | - | chr4_2:15778601-15778620 | None:intergenic | 40.0% | |
| TGTCTAACGCTAAAACAGCT+AGG | + | chr4_2:15778641-15778660 | Msa0591470:CDS | 40.0% | |
| GTCTAACGCTAAAACAGCTA+GGG | + | chr4_2:15778642-15778661 | Msa0591470:CDS | 40.0% | |
| ACAATGGAAGCTTCCATTGT+GGG | - | chr4_2:15778719-15778738 | None:intergenic | 40.0% | |
| TTCCATTGTGATGAAGCTCT+TGG | + | chr4_2:15778730-15778749 | Msa0591470:CDS | 40.0% | |
| AACCAAGAGCTTCATCACAA+TGG | - | chr4_2:15778735-15778754 | None:intergenic | 40.0% | |
| AAATCTCAGAAACCAAAGGG+GGG | - | chr4_2:15778845-15778864 | None:intergenic | 40.0% | |
| !! | TGAATGGTGTTTTGTTGCTG+AGG | + | chr4_2:15779206-15779225 | Msa0591470:intron | 40.0% |
| ! | TTGTTAGGTTGCTGACGAAA+TGG | + | chr4_2:15779306-15779325 | Msa0591470:intron | 40.0% |
| CTTATTCCACTAAGTAGGGT+CGG | - | chr4_2:15779430-15779449 | None:intergenic | 40.0% | |
| TGAGAAAATGTGGATAAGGG+TGG | + | chr4_2:15779617-15779636 | Msa0591470:intron | 40.0% | |
| ! | TTGCTACCGGTGTTTCTTTT+TGG | + | chr4_2:15779711-15779730 | Msa0591470:intron | 40.0% |
| CTTGATGCTGTTCTTGATGT+TGG | + | chr4_2:15779846-15779865 | Msa0591470:CDS | 40.0% | |
| ATGCTGTTCTTGATGTTGGA+GGG | + | chr4_2:15779850-15779869 | Msa0591470:CDS | 40.0% | |
| GTGATGATCATAACGATCTC+GGG | - | chr4_2:15779889-15779908 | None:intergenic | 40.0% | |
| GGTGATGATCATAACGATCT+CGG | - | chr4_2:15779890-15779909 | None:intergenic | 40.0% | |
| CGTTATGATCATCACCAGAA+AGG | + | chr4_2:15779894-15779913 | Msa0591470:CDS | 40.0% | |
| TCATCACCAGAAAGGATTTG+AGG | + | chr4_2:15779902-15779921 | Msa0591470:CDS | 40.0% | |
| AAACCTCCTCAAATCCTTTC+TGG | - | chr4_2:15779911-15779930 | None:intergenic | 40.0% | |
| !! | CAGTGCTGGTCTTGTTTATA+AGG | + | chr4_2:15779959-15779978 | Msa0591470:CDS | 40.0% |
| ! | TGCTGGTTGAAGTGAAATAG+AGG | + | chr4_2:15780024-15780043 | Msa0591470:intron | 40.0% |
| GCTGGTTGAAGTGAAATAGA+GGG | + | chr4_2:15780025-15780044 | Msa0591470:intron | 40.0% | |
| GTTGAAGTGAAATAGAGGGA+GGG | + | chr4_2:15780029-15780048 | Msa0591470:intron | 40.0% | |
| ! | CTTTTGATCGACAATGTGTC+TGG | + | chr4_2:15780189-15780208 | Msa0591470:intron | 40.0% |
| CACTGTTTGTTTCAAAGGAG+GGG | - | chr4_2:15780476-15780495 | None:intergenic | 40.0% | |
| CACACTGTTTGTTTCAAAGG+AGG | - | chr4_2:15780478-15780497 | None:intergenic | 40.0% | |
| ! | CAGTGTGAATTCCTCTGTTT+TGG | + | chr4_2:15780491-15780510 | Msa0591470:intron | 40.0% |
| AAAGACAGGGAGAATTGAAG+AGG | + | chr4_2:15780852-15780871 | Msa0591470:intron | 40.0% | |
| ! | TTTGATAATCGCCTGCAGAA+TGG | + | chr4_2:15781323-15781342 | Msa0591470:intron | 40.0% |
| GTTCGTTAGTCCTCTTAAAG+TGG | + | chr4_2:15781366-15781385 | Msa0591470:intron | 40.0% | |
| ! | CACTAATCAGCCACTTTAAG+AGG | - | chr4_2:15781379-15781398 | None:intergenic | 40.0% |
| TCTTTCTCAGATGACTGATC+GGG | - | chr4_2:15781594-15781613 | None:intergenic | 40.0% | |
| TGAAAACGAACACTCTGCAA+AGG | - | chr4_2:15781791-15781810 | None:intergenic | 40.0% | |
| ACCAGCAAAGTCAATTGTGA+TGG | + | chr4_2:15781826-15781845 | Msa0591470:CDS | 40.0% | |
| ! | TCCATCACAATTGACTTTGC+TGG | - | chr4_2:15781830-15781849 | None:intergenic | 40.0% |
| ! | AATTGTGATGGAGACCATTG+CGG | + | chr4_2:15781838-15781857 | Msa0591470:CDS | 40.0% |
| GGCAAGAATAATCAACTCAC+AGG | - | chr4_2:15781917-15781936 | None:intergenic | 40.0% | |
| AATCAAGAACAACCAGTCAC+AGG | - | chr4_2:15782334-15782353 | None:intergenic | 40.0% | |
| !!! | CTGCTGTTTTTGTCCTAGAA+TGG | + | chr4_2:15782543-15782562 | Msa0591470:intron | 40.0% |
| TTGTCCTAGAATGGTCATCA+TGG | + | chr4_2:15782552-15782571 | Msa0591470:intron | 40.0% | |
| TGTCCTAGAATGGTCATCAT+GGG | + | chr4_2:15782553-15782572 | Msa0591470:intron | 40.0% | |
| AGCGGCATTATACTAAGTAC+TGG | + | chr4_2:15782665-15782684 | Msa0591470:intron | 40.0% | |
| GCTTCACTTATTTGAGCTTG+AGG | + | chr4_2:15782733-15782752 | Msa0591470:CDS | 40.0% | |
| TCACTTATTTGAGCTTGAGG+GGG | + | chr4_2:15782736-15782755 | Msa0591470:CDS | 40.0% | |
| GTTCTCAAGTAGTCTCCAAT+AGG | + | chr4_2:15782846-15782865 | Msa0591470:intron | 40.0% | |
| !! | TTTTAGAAGGACCGCTAAGT+TGG | + | chr4_2:15782884-15782903 | Msa0591470:intron | 40.0% |
| TTTAGAAGGACCGCTAAGTT+GGG | + | chr4_2:15782885-15782904 | Msa0591470:intron | 40.0% | |
| CCAATAAAAGCCCAACTTAG+CGG | - | chr4_2:15782898-15782917 | None:intergenic | 40.0% | |
| ATTAAGCTGAGCAAATGCAG+AGG | - | chr4_2:15783088-15783107 | None:intergenic | 40.0% | |
| AACAACCTTAATGGTGCAGT+TGG | - | chr4_2:15783137-15783156 | None:intergenic | 40.0% | |
| CGCCAATAAATCCACTCATA+TGG | - | chr4_2:15783398-15783417 | None:intergenic | 40.0% | |
| ! | CCAAAGCACCTTCAAAAGTT+TGG | - | chr4_2:15783425-15783444 | None:intergenic | 40.0% |
| !!! | CCAAACTTTTGAAGGTGCTT+TGG | + | chr4_2:15783422-15783441 | Msa0591470:CDS | 40.0% |
| !! | TGCTTTGAAGATGTAGGCAA+AGG | + | chr4_2:15783458-15783477 | Msa0591470:exon | 40.0% |
| GATTGCATTAAAGAGGCAGA+TGG | + | chr4_2:15783544-15783563 | Msa0591470:three_prime_UTR | 40.0% | |
| CATTAAAGAGGCAGATGGAT+GGG | + | chr4_2:15783549-15783568 | Msa0591470:three_prime_UTR | 40.0% | |
| AGTGCTTCTGCTTGTACTTG+GGG | - | chr4_2:15778600-15778619 | None:intergenic | 45.0% | |
| ! | GAAGTGCTTCTGCTTGTACT+TGG | - | chr4_2:15778602-15778621 | None:intergenic | 45.0% |
| CACAATGGAAGCTTCCATTG+TGG | - | chr4_2:15778718-15778737 | None:intergenic | 45.0% | |
| CGACCCTACTTAGTGGAATA+AGG | + | chr4_2:15779428-15779447 | Msa0591470:intron | 45.0% | |
| !! | TGTGATTCTGTAGGTGTTGG+AGG | + | chr4_2:15779821-15779840 | Msa0591470:intron | 45.0% |
| !! | GTGATTCTGTAGGTGTTGGA+GGG | + | chr4_2:15779822-15779841 | Msa0591470:intron | 45.0% |
| GATGCTGTTCTTGATGTTGG+AGG | + | chr4_2:15779849-15779868 | Msa0591470:CDS | 45.0% | |
| TGCTGTTCTTGATGTTGGAG+GGG | + | chr4_2:15779851-15779870 | Msa0591470:CDS | 45.0% | |
| TCACCAGAAAGGATTTGAGG+AGG | + | chr4_2:15779905-15779924 | Msa0591470:CDS | 45.0% | |
| !! | TTTGAGGAGGTTTTTGGGCA+TGG | + | chr4_2:15779918-15779937 | Msa0591470:CDS | 45.0% |
| GGTTGAAGTGAAATAGAGGG+AGG | + | chr4_2:15780028-15780047 | Msa0591470:intron | 45.0% | |
| CCATTTGGTTAGAAGAGAGG+AGG | - | chr4_2:15780428-15780447 | None:intergenic | 45.0% | |
| CCTCCTCTCTTCTAACCAAA+TGG | + | chr4_2:15780425-15780444 | Msa0591470:intron | 45.0% | |
| TGTTTACAGGAGCTTCATGG+AGG | + | chr4_2:15780678-15780697 | Msa0591470:CDS | 45.0% | |
| TTAAAACGGAGTCCCTTGCT+TGG | + | chr4_2:15780787-15780806 | Msa0591470:intron | 45.0% | |
| CTGATAGCTGTCAGTCAGTA+AGG | - | chr4_2:15780967-15780986 | None:intergenic | 45.0% | |
| GACTCACACTGTTGCATATC+GGG | - | chr4_2:15781044-15781063 | None:intergenic | 45.0% | |
| CGACTCACACTGTTGCATAT+CGG | - | chr4_2:15781045-15781064 | None:intergenic | 45.0% | |
| ACAGTGTGAGTCGCAGAATT+AGG | + | chr4_2:15781052-15781071 | Msa0591470:intron | 45.0% | |
| !! | ACTCGCTCACTGACTTACTA+AGG | + | chr4_2:15781157-15781176 | Msa0591470:intron | 45.0% |
| !! | CTCGCTCACTGACTTACTAA+GGG | + | chr4_2:15781158-15781177 | Msa0591470:intron | 45.0% |
| !! | TCGCTCACTGACTTACTAAG+GGG | + | chr4_2:15781159-15781178 | Msa0591470:intron | 45.0% |
| GCAATTGATGCCGTAGACAA+TGG | + | chr4_2:15781474-15781493 | Msa0591470:CDS | 45.0% | |
| ! | TTCGTTTTCACGTGAACTCG+TGG | + | chr4_2:15781801-15781820 | Msa0591470:CDS | 45.0% |
| AGACAAACCGTTGATCCTTC+TGG | + | chr4_2:15781863-15781882 | Msa0591470:CDS | 45.0% | |
| TAACTGTTACTGCCTGTGAC+TGG | + | chr4_2:15782319-15782338 | Msa0591470:intron | 45.0% | |
| CAGGTAGGAAAACAACACCA+TGG | + | chr4_2:15782391-15782410 | Msa0591470:intron | 45.0% | |
| !! | CCGCTAAGTTGGGCTTTTAT+TGG | + | chr4_2:15782895-15782914 | Msa0591470:intron | 45.0% |
| TGTTTGCTTCTCTCATCCTG+TGG | - | chr4_2:15783246-15783265 | None:intergenic | 45.0% | |
| AGGATGAGAGAAGCAAACAG+TGG | + | chr4_2:15783247-15783266 | Msa0591470:intron | 45.0% | |
| GACGTACTGTCAAAGGAATC+TGG | + | chr4_2:15783351-15783370 | Msa0591470:CDS | 45.0% | |
| TCAAAGGAATCTGGCATTCC+TGG | + | chr4_2:15783360-15783379 | Msa0591470:CDS | 45.0% | |
| ! | GGCGGAAACCAAACTTTTGA+AGG | + | chr4_2:15783414-15783433 | Msa0591470:CDS | 45.0% |
| !!! | TTTTGAAGGTGCTTTGGCCA+TGG | + | chr4_2:15783428-15783447 | Msa0591470:CDS | 45.0% |
| ! | CTTCAAAGCAGCTTTTGCCA+TGG | - | chr4_2:15783448-15783467 | None:intergenic | 45.0% |
| GCATTAAAGAGGCAGATGGA+TGG | + | chr4_2:15783548-15783567 | Msa0591470:three_prime_UTR | 45.0% | |
| TCTGCTTGTACTTGGGGAAG+TGG | - | chr4_2:15778594-15778613 | None:intergenic | 50.0% | |
| ! | TTGAGAGAGGCGTGAGAAGA+AGG | - | chr4_2:15778685-15778704 | None:intergenic | 50.0% |
| AAACCAAAGGGGGGTTGAGA+GGG | - | chr4_2:15778836-15778855 | None:intergenic | 50.0% | |
| ACTAAGTAGGGTCGGCTACA+TGG | - | chr4_2:15779422-15779441 | None:intergenic | 50.0% | |
| ATGTAGCCGACCCTACTTAG+TGG | + | chr4_2:15779421-15779440 | Msa0591470:intron | 50.0% | |
| TGATCATAACGATCTCGGGC+AGG | - | chr4_2:15779885-15779904 | None:intergenic | 50.0% | |
| ! | TCCACTAAGTTGAGCAGTGC+TGG | + | chr4_2:15779945-15779964 | Msa0591470:CDS | 50.0% |
| ACCAGCACTGCTCAACTTAG+TGG | - | chr4_2:15779949-15779968 | None:intergenic | 50.0% | |
| GGCTGTTTACAGGAGCTTCA+TGG | + | chr4_2:15780675-15780694 | Msa0591470:CDS | 50.0% | |
| AATCGCCTGCAGAATGGCTT+AGG | + | chr4_2:15781329-15781348 | Msa0591470:intron | 50.0% | |
| ATCGCCTGCAGAATGGCTTA+GGG | + | chr4_2:15781330-15781349 | Msa0591470:intron | 50.0% | |
| ATTCCCCTAAGCCATTCTGC+AGG | - | chr4_2:15781337-15781356 | None:intergenic | 50.0% | |
| AGAATGGCTTAGGGGAATGC+TGG | + | chr4_2:15781339-15781358 | Msa0591470:intron | 50.0% | |
| ! | TGAAGCATTTCATCGGGCCA+TGG | + | chr4_2:15781617-15781636 | Msa0591470:CDS | 50.0% |
| ! | ACTTGCTGGCAGTGAGTTTC+TGG | + | chr4_2:15781641-15781660 | Msa0591470:CDS | 50.0% |
| CGAACACTCTGCAAAGGAAG+AGG | - | chr4_2:15781785-15781804 | None:intergenic | 50.0% | |
| AACGGTTTGTCTAGCCGCAA+TGG | - | chr4_2:15781855-15781874 | None:intergenic | 50.0% | |
| GGTCCCATGATGACCATTCT+AGG | - | chr4_2:15782559-15782578 | None:intergenic | 50.0% | |
| TTCCGGCTCTCGAATCTATC+GGG | - | chr4_2:15783297-15783316 | None:intergenic | 50.0% | |
| CTTCCGGCTCTCGAATCTAT+CGG | - | chr4_2:15783298-15783317 | None:intergenic | 50.0% | |
| ACTGTGAAGGTAGAGCCTTC+CGG | - | chr4_2:15783314-15783333 | None:intergenic | 50.0% | |
| CTTCACAGTGGCGAGGTTTA+CGG | + | chr4_2:15783325-15783344 | Msa0591470:CDS | 50.0% | |
| TTCACAGTGGCGAGGTTTAC+GGG | + | chr4_2:15783326-15783345 | Msa0591470:CDS | 50.0% | |
| ACGGGATGACGTACTGTCAA+AGG | + | chr4_2:15783344-15783363 | Msa0591470:CDS | 50.0% | |
| ! | AAGCGCGTTGGTACCCACAA+TGG | + | chr4_2:15778703-15778722 | Msa0591470:CDS | 55.0% |
| AACCAAAGGGGGGTTGAGAG+GGG | - | chr4_2:15778835-15778854 | None:intergenic | 55.0% | |
| GAAACCAAAGGGGGGTTGAG+AGG | - | chr4_2:15778837-15778856 | None:intergenic | 55.0% | |
| !! | ACATGTGTCGGTGTCGTGTC+GGG | - | chr4_2:15780217-15780236 | None:intergenic | 55.0% |
| !! | CACATGTGTCGGTGTCGTGT+CGG | - | chr4_2:15780218-15780237 | None:intergenic | 55.0% |
| CAACGTGTCTGTGTCGTGTC+CGG | + | chr4_2:15780278-15780297 | Msa0591470:intron | 55.0% | |
| CGAGTCTTGCAGGAGAGTCT+AGG | - | chr4_2:15781142-15781161 | None:intergenic | 55.0% | |
| AGTCAGTGAGCGAGTCTTGC+AGG | - | chr4_2:15781152-15781171 | None:intergenic | 55.0% | |
| TCGCCTGCAGAATGGCTTAG+GGG | + | chr4_2:15781331-15781350 | Msa0591470:intron | 55.0% | |
| ATGGCTTAGGGGAATGCTGG+TGG | + | chr4_2:15781342-15781361 | Msa0591470:intron | 55.0% | |
| TGGCTTAGGGGAATGCTGGT+GGG | + | chr4_2:15781343-15781362 | Msa0591470:intron | 55.0% | |
| AAGCAAACAGTGGCGAGTGC+AGG | + | chr4_2:15783257-15783276 | Msa0591470:CDS | 55.0% | |
| CTCCCGATAGATTCGAGAGC+CGG | + | chr4_2:15783292-15783311 | Msa0591470:CDS | 55.0% | |
| CGATAGATTCGAGAGCCGGA+AGG | + | chr4_2:15783296-15783315 | Msa0591470:CDS | 55.0% | |
| GGAAGGCTCTACCTTCACAG+TGG | + | chr4_2:15783313-15783332 | Msa0591470:CDS | 55.0% | |
| CGTAAACCTCGCCACTGTGA+AGG | - | chr4_2:15783327-15783346 | None:intergenic | 55.0% | |
| AGGCAGATGGATGGGAACAG+AGG | + | chr4_2:15783557-15783576 | Msa0591470:three_prime_UTR | 55.0% | |
| GGTACCAACGCGCTTGAGAG+AGG | - | chr4_2:15778698-15778717 | None:intergenic | 60.0% | |
| CGTTCGAACTCGTGACCCTC+AGG | + | chr4_2:15778798-15778817 | Msa0591470:CDS | 60.0% | |
| TCGTGACCCTCAGGTTCGTG+TGG | + | chr4_2:15778807-15778826 | Msa0591470:intron | 60.0% | |
| CGTGACCCTCAGGTTCGTGT+GGG | + | chr4_2:15778808-15778827 | Msa0591470:intron | 60.0% | |
| GGCTTAGGGGAATGCTGGTG+GGG | + | chr4_2:15781344-15781363 | Msa0591470:intron | 60.0% | |
| CTCACTGCCAGCAAGTGCCA+TGG | - | chr4_2:15781637-15781656 | None:intergenic | 60.0% | |
| GCTCTACCTTCACAGTGGCG+AGG | + | chr4_2:15783318-15783337 | Msa0591470:CDS | 60.0% | |
| CACGCCTCTCTCAAGCGCGT+TGG | + | chr4_2:15778691-15778710 | Msa0591470:CDS | 65.0% | |
| GGGGTCCCACACGAACCTGA+GGG | - | chr4_2:15778816-15778835 | None:intergenic | 65.0% | |
| AGGGGTCCCACACGAACCTG+AGG | - | chr4_2:15778817-15778836 | None:intergenic | 65.0% | |
| GACCCCTCTCAACCCCCCTT+TGG | + | chr4_2:15778830-15778849 | Msa0591470:intron | 65.0% | |
| CATCGGGCCATGGCACTTGC+TGG | + | chr4_2:15781627-15781646 | Msa0591470:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 15778469 | 15783912 | 15778469 | ID=Msa0591470;Name=Msa0591470 |
| chr4_2 | mRNA | 15778469 | 15783912 | 15778469 | ID=Msa0591470-mRNA-1;Parent=Msa0591470;Name=Msa0591470-mRNA-1;_AED=0.06;_eAED=0.06;_QI=57|1|1|1|0.85|0.75|8|374|382 |
| chr4_2 | exon | 15778469 | 15778819 | 15778469 | ID=Msa0591470-mRNA-1:exon:4533;Parent=Msa0591470-mRNA-1 |
| chr4_2 | exon | 15779834 | 15779980 | 15779834 | ID=Msa0591470-mRNA-1:exon:4534;Parent=Msa0591470-mRNA-1 |
| chr4_2 | exon | 15780601 | 15780699 | 15780601 | ID=Msa0591470-mRNA-1:exon:4535;Parent=Msa0591470-mRNA-1 |
| chr4_2 | exon | 15781474 | 15781665 | 15781474 | ID=Msa0591470-mRNA-1:exon:4536;Parent=Msa0591470-mRNA-1 |
| chr4_2 | exon | 15781797 | 15781916 | 15781797 | ID=Msa0591470-mRNA-1:exon:4537;Parent=Msa0591470-mRNA-1 |
| chr4_2 | exon | 15782728 | 15782799 | 15782728 | ID=Msa0591470-mRNA-1:exon:4538;Parent=Msa0591470-mRNA-1 |
| chr4_2 | exon | 15783249 | 15783644 | 15783249 | ID=Msa0591470-mRNA-1:exon:4539;Parent=Msa0591470-mRNA-1 |
| chr4_2 | exon | 15783710 | 15783912 | 15783710 | ID=Msa0591470-mRNA-1:exon:4540;Parent=Msa0591470-mRNA-1 |
| chr4_2 | five_prime_UTR | 15778469 | 15778525 | 15778469 | ID=Msa0591470-mRNA-1:five_prime_utr;Parent=Msa0591470-mRNA-1 |
| chr4_2 | CDS | 15778526 | 15778819 | 15778526 | ID=Msa0591470-mRNA-1:cds;Parent=Msa0591470-mRNA-1 |
| chr4_2 | CDS | 15779834 | 15779980 | 15779834 | ID=Msa0591470-mRNA-1:cds;Parent=Msa0591470-mRNA-1 |
| chr4_2 | CDS | 15780601 | 15780699 | 15780601 | ID=Msa0591470-mRNA-1:cds;Parent=Msa0591470-mRNA-1 |
| chr4_2 | CDS | 15781474 | 15781665 | 15781474 | ID=Msa0591470-mRNA-1:cds;Parent=Msa0591470-mRNA-1 |
| chr4_2 | CDS | 15781797 | 15781916 | 15781797 | ID=Msa0591470-mRNA-1:cds;Parent=Msa0591470-mRNA-1 |
| chr4_2 | CDS | 15782728 | 15782799 | 15782728 | ID=Msa0591470-mRNA-1:cds;Parent=Msa0591470-mRNA-1 |
| chr4_2 | CDS | 15783249 | 15783473 | 15783249 | ID=Msa0591470-mRNA-1:cds;Parent=Msa0591470-mRNA-1 |
| chr4_2 | three_prime_UTR | 15783474 | 15783644 | 15783474 | ID=Msa0591470-mRNA-1:three_prime_utr;Parent=Msa0591470-mRNA-1 |
| chr4_2 | three_prime_UTR | 15783710 | 15783912 | 15783710 | ID=Msa0591470-mRNA-1:three_prime_utr;Parent=Msa0591470-mRNA-1 |
| Gene Sequence |
| Protein sequence |
