Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535360 | XP_013454988.1 | 95.957 | 371 | 12 | 2 | 1 | 371 | 1 | 368 | 0.0 | 710 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535360 | sp|Q58DG1|MYG1_BOVIN | 51.026 | 341 | 155 | 6 | 47 | 380 | 31 | 366 | 4.25e-108 | 325 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535360 | A0A072UT21 | 95.957 | 371 | 12 | 2 | 1 | 371 | 1 | 368 | 0.0 | 710 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0138920 | Msa0535360 | 0.801134 | 1.038979e-48 | -8.615850e-47 |
| Msa0264570 | Msa0535360 | 0.813424 | 2.577709e-51 | -8.615850e-47 |
| Msa0535360 | Msa0576940 | 0.805646 | 1.207490e-49 | -8.615850e-47 |
| Msa0535360 | Msa0591470 | 0.938567 | 5.431269e-99 | -8.615850e-47 |
| Msa0535360 | Msa0631670 | 0.920786 | 8.223061e-88 | -8.615850e-47 |
| Msa0535360 | Msa0677290 | 0.825846 | 3.751416e-54 | -8.615850e-47 |
| Msa0535360 | Msa1104140 | 0.808880 | 2.491942e-50 | -8.615850e-47 |
| Msa0535360 | Msa1201650 | 0.841119 | 5.764038e-58 | -8.615850e-47 |
| Msa0535360 | Msa1218140 | 0.809267 | 2.059356e-50 | -8.615850e-47 |
| Msa0535360 | Msa1226620 | 0.802000 | 6.904870e-49 | -8.615850e-47 |
| Msa0535360 | Msa1252190 | 0.803150 | 3.998156e-49 | -8.615850e-47 |
| Msa0535360 | Msa1254610 | 0.816232 | 6.150417e-52 | -8.615850e-47 |
| Msa0535360 | Msa1292830 | 0.818543 | 1.855994e-52 | -8.615850e-47 |
| Msa0535360 | Msa1432700 | 0.800514 | 1.390478e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535360 | MtrunA17_Chr4g0009411 | 95.957 | 371 | 12 | 2 | 1 | 371 | 1 | 368 | 0.0 | 710 |
| Msa0535360 | MtrunA17_Chr3g0127371 | 64.583 | 336 | 117 | 1 | 46 | 381 | 11 | 344 | 5.15e-168 | 473 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0535360 | AT5G41970.1 | 69.761 | 377 | 105 | 3 | 8 | 382 | 4 | 373 | 0.0 | 555 |
| Msa0535360 | AT3G49320.1 | 70.695 | 331 | 97 | 0 | 50 | 380 | 22 | 352 | 0.0 | 508 |
| Msa0535360 | AT3G49320.2 | 67.660 | 235 | 76 | 0 | 50 | 284 | 22 | 256 | 6.52e-119 | 345 |
Find 107 sgRNAs with CRISPR-Local
Find 337 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTCTTCACTAATGTATTA+TGG | 0.184664 | 4_1:+11614255 | Msa0535360:three_prime_UTR |
| AATCAGTTTATGATCTTAAA+AGG | 0.188238 | 4_1:+11614464 | Msa0535360:three_prime_UTR |
| TGAGTATTATTCACATATTT+TGG | 0.193287 | 4_1:-11611951 | None:intergenic |
| ACTTGCTGGCAGTGAGTTTC+TGG | 0.203766 | 4_1:+11612067 | Msa0535360:CDS |
| AAACCTCCTCAAATCCTTTC+TGG | 0.205905 | 4_1:-11610341 | None:intergenic |
| AAATGTCCATTACGTATATT+TGG | 0.212868 | 4_1:+11611087 | Msa0535360:CDS |
| AATATACGTAATGGACATTT+TGG | 0.220571 | 4_1:-11611084 | None:intergenic |
| TGCCCACATCATATGACTTT+TGG | 0.245472 | 4_1:-11609018 | None:intergenic |
| CCAAAGCACCTTCAAAAGTT+TGG | 0.266550 | 4_1:-11614032 | None:intergenic |
| CAGTGCTGGTCTTGTTTATA+AGG | 0.270739 | 4_1:+11610392 | Msa0535360:CDS |
| ACGTATATTTGGCTGTTTAC+AGG | 0.273800 | 4_1:+11611098 | Msa0535360:CDS |
| GAAATGTTCTGCAAAATTAA+TGG | 0.289764 | 4_1:-11614116 | None:intergenic |
| GTGGAAATGGAATTGGAATT+TGG | 0.290185 | 4_1:-11609075 | None:intergenic |
| CTTCACAGTGGCGAGGTTTA+CGG | 0.296003 | 4_1:+11613935 | Msa0535360:CDS |
| GTCCATATGAGTGGATTTAT+TGG | 0.303964 | 4_1:+11614003 | Msa0535360:CDS |
| CTTGATGCTGTTCTTGATGT+TGG | 0.303993 | 4_1:+11610279 | Msa0535360:CDS |
| AGACAAACCGTTGATCCTTC+TGG | 0.314250 | 4_1:+11612289 | Msa0535360:CDS |
| TCAAAGGAATCTGGCATTCC+TGG | 0.319752 | 4_1:+11613970 | Msa0535360:CDS |
| TTCACAGTGGCGAGGTTTAC+GGG | 0.324078 | 4_1:+11613936 | Msa0535360:CDS |
| CATCGGGCCATGGCACTTGC+TGG | 0.339183 | 4_1:+11612053 | Msa0535360:CDS |
| TGGGGAAGTGGAAATGGAAT+TGG | 0.371440 | 4_1:-11609082 | None:intergenic |
| GAAGTGCTTCTGCTTGTACT+TGG | 0.381780 | 4_1:-11609102 | None:intergenic |
| AAGAGTAGGAAGGTTTAATC+TGG | 0.393648 | 4_1:+11611983 | Msa0535360:CDS |
| GGCTGTTTACAGGAGCTTCA+TGG | 0.397194 | 4_1:+11611108 | Msa0535360:CDS |
| TCCATCACAATTGACTTTGC+TGG | 0.397434 | 4_1:-11612253 | None:intergenic |
| TTAAAAGAACATAAATTGAA+TGG | 0.399835 | 4_1:-11614439 | None:intergenic |
| TCCACTAAGTTGAGCAGTGC+TGG | 0.401728 | 4_1:+11610378 | Msa0535360:CDS |
| ACCAGCACTGCTCAACTTAG+TGG | 0.402993 | 4_1:-11610379 | None:intergenic |
| TCTTTATGATAAAATGTCAT+TGG | 0.409967 | 4_1:+11614282 | Msa0535360:three_prime_UTR |
| TTGAATGGAACTAATAAAGT+AGG | 0.421310 | 4_1:-11614424 | None:intergenic |
| GATTATAGCTAATGAACTTA+AGG | 0.428163 | 4_1:+11611048 | Msa0535360:CDS |
| CGCCAATAAATCCACTCATA+TGG | 0.432741 | 4_1:-11614005 | None:intergenic |
| ATGCTGTTCTTGATGTTGGA+GGG | 0.432940 | 4_1:+11610283 | Msa0535360:CDS |
| AAGTGCTTCTGCTTGTACTT+GGG | 0.437485 | 4_1:-11609101 | None:intergenic |
| TCTTTCTCAGATGACTGATC+GGG | 0.445349 | 4_1:-11612017 | None:intergenic |
| CTTCACTTATTTGAGCTTGA+GGG | 0.445870 | 4_1:+11613163 | Msa0535360:CDS |
| CGTTCGAACTCGTGACCCTC+AGG | 0.446123 | 4_1:+11609301 | Msa0535360:CDS |
| TAGGAAGGTTTAATCTGGAT+TGG | 0.446800 | 4_1:+11611988 | Msa0535360:CDS |
| TGTACTTGGGGAAGTGGAAA+TGG | 0.450852 | 4_1:-11609088 | None:intergenic |
| TCGTACAGAACATATTTGAT+TGG | 0.452757 | 4_1:-11613205 | None:intergenic |
| GACGTACTGTCAAAGGAATC+TGG | 0.453062 | 4_1:+11613961 | Msa0535360:CDS |
| TTGAGAGACGCGTGAGAAGA+AGG | 0.455829 | 4_1:-11609185 | None:intergenic |
| TTCTTTCTCAGATGACTGAT+CGG | 0.468555 | 4_1:-11612018 | None:intergenic |
| AAGCAAACAGTGGCGAGTGC+AGG | 0.469480 | 4_1:+11613867 | Msa0535360:CDS |
| CTTCCGGCTCTCGAATCTAT+CGG | 0.470405 | 4_1:-11613905 | None:intergenic |
| TTCCATTGTGATGAAGCTCT+TGG | 0.479009 | 4_1:+11609233 | Msa0535360:CDS |
| TTGATTGATTCCATTGTCTA+CGG | 0.487412 | 4_1:-11611910 | None:intergenic |
| TTGTAACAAGTCAAACACTA+TGG | 0.488476 | 4_1:+11614092 | Msa0535360:three_prime_UTR |
| GATGCTGTTCTTGATGTTGG+AGG | 0.499216 | 4_1:+11610282 | Msa0535360:CDS |
| GGTGATGATCATAACGATCT+CGG | 0.504124 | 4_1:-11610320 | None:intergenic |
| AAAACTAAAATTTCTCCAGA+AGG | 0.507002 | 4_1:-11612304 | None:intergenic |
| AAGAAAATGAAGCATTTCAT+CGG | 0.507024 | 4_1:+11612036 | Msa0535360:CDS |
| AGAAAATGAAGCATTTCATC+GGG | 0.507874 | 4_1:+11612037 | Msa0535360:CDS |
| TCTGCTTGTACTTGGGGAAG+TGG | 0.508698 | 4_1:-11609094 | None:intergenic |
| TGTCTAACGCTAAAACAGCT+AGG | 0.511369 | 4_1:+11609144 | Msa0535360:CDS |
| TTCCGGCTCTCGAATCTATC+GGG | 0.512998 | 4_1:-11613904 | None:intergenic |
| AAACAGCCAAATATACGTAA+TGG | 0.515908 | 4_1:-11611093 | None:intergenic |
| GTCTAACGCTAAAACAGCTA+GGG | 0.518681 | 4_1:+11609145 | Msa0535360:CDS |
| TGAATGGAACTAATAAAGTA+GGG | 0.520222 | 4_1:-11614423 | None:intergenic |
| TACAGAACATATTTGATTGG+TGG | 0.524993 | 4_1:-11613202 | None:intergenic |
| ACAATGGAAGCTACCATTGT+GGG | 0.525062 | 4_1:-11609219 | None:intergenic |
| TGCTGTTCTTGATGTTGGAG+GGG | 0.529822 | 4_1:+11610284 | Msa0535360:CDS |
| AGTGCTTCTGCTTGTACTTG+GGG | 0.532619 | 4_1:-11609100 | None:intergenic |
| TCATCACCAGAAAGGATTTG+AGG | 0.532672 | 4_1:+11610335 | Msa0535360:CDS |
| TGTGATTCTGTAGGTGTTGG+AGG | 0.532949 | 4_1:+11610254 | Msa0535360:intron |
| AATCCAAAAGTCATATGATG+TGG | 0.534140 | 4_1:+11609015 | Msa0535360:exon |
| GCTTCACTTATTTGAGCTTG+AGG | 0.539094 | 4_1:+11613162 | Msa0535360:CDS |
| CATTAAAGAGGCAGATGGAT+GGG | 0.542297 | 4_1:+11614159 | Msa0535360:three_prime_UTR |
| ACAGAACATATTTGATTGGT+GGG | 0.547994 | 4_1:-11613201 | None:intergenic |
| AACGGTTTGTCTAGCCGCAA+TGG | 0.551955 | 4_1:-11612278 | None:intergenic |
| CTCCCGATAGATTCGAGAGC+CGG | 0.553624 | 4_1:+11613902 | Msa0535360:CDS |
| CGTTATGATCATCACCAGAA+AGG | 0.554112 | 4_1:+11610327 | Msa0535360:CDS |
| ACTGTGAAGGTAGAGCCTTC+CGG | 0.555569 | 4_1:-11613921 | None:intergenic |
| GCATTAAAGAGGCAGATGGA+TGG | 0.555815 | 4_1:+11614158 | Msa0535360:three_prime_UTR |
| TGCTTTGAAGATGTAGGCAA+AGG | 0.556037 | 4_1:+11614068 | Msa0535360:exon |
| ATTAAACCTTCCTACTCTTG+AGG | 0.556617 | 4_1:-11611979 | None:intergenic |
| CATATGAGTGGATTTATTGG+CGG | 0.560355 | 4_1:+11614006 | Msa0535360:CDS |
| ACGGGATGACGTACTGTCAA+AGG | 0.561567 | 4_1:+11613954 | Msa0535360:CDS |
| GTGATGATCATAACGATCTC+GGG | 0.561931 | 4_1:-11610319 | None:intergenic |
| GATTGCATTAAAGAGGCAGA+TGG | 0.563253 | 4_1:+11614154 | Msa0535360:three_prime_UTR |
| TGAAGCATTTCATCGGGCCA+TGG | 0.565145 | 4_1:+11612043 | Msa0535360:CDS |
| GCAATTGATGCCGTAGACAA+TGG | 0.565550 | 4_1:+11611900 | Msa0535360:CDS |
| TGATCATAACGATCTCGGGC+AGG | 0.569953 | 4_1:-11610315 | None:intergenic |
| TTCACTTATTTGAGCTTGAG+GGG | 0.571793 | 4_1:+11613164 | Msa0535360:CDS |
| CGTAAACCTCGCCACTGTGA+AGG | 0.574929 | 4_1:-11613934 | None:intergenic |
| AAAAGCTGCTTTGAAGATGT+AGG | 0.585064 | 4_1:+11614062 | Msa0535360:CDS |
| ATTTATCCTCAAGAGTAGGA+AGG | 0.585427 | 4_1:+11611973 | Msa0535360:CDS |
| ACCAGCAAAGTCAATTGTGA+TGG | 0.591652 | 4_1:+11612252 | Msa0535360:CDS |
| CACGCGTCTCTCAAGCGCGT+CGG | 0.593605 | 4_1:+11609194 | Msa0535360:CDS |
| ATCCAAAAGTCATATGATGT+GGG | 0.594080 | 4_1:+11609016 | Msa0535360:exon |
| AATTTCTCCAGAAGGATCAA+CGG | 0.595122 | 4_1:-11612296 | None:intergenic |
| GTGATTCTGTAGGTGTTGGA+GGG | 0.600860 | 4_1:+11610255 | Msa0535360:intron |
| CTCACTGCCAGCAAGTGCCA+TGG | 0.603288 | 4_1:-11612060 | None:intergenic |
| AGGCAGATGGATGGGAACAG+AGG | 0.607315 | 4_1:+11614167 | Msa0535360:three_prime_UTR |
| AAGCGCGTCGGTACCCACAA+TGG | 0.609509 | 4_1:+11609206 | Msa0535360:CDS |
| TCACTTATTTGAGCTTGAGG+GGG | 0.611669 | 4_1:+11613165 | Msa0535360:CDS |
| ACTCATTTATCCTCAAGAGT+AGG | 0.617854 | 4_1:+11611969 | Msa0535360:CDS |
| CACAATGGAAGCTACCATTG+TGG | 0.618131 | 4_1:-11609220 | None:intergenic |
| CGATAGATTCGAGAGCCGGA+AGG | 0.619380 | 4_1:+11613906 | Msa0535360:CDS |
| TCACCAGAAAGGATTTGAGG+AGG | 0.629775 | 4_1:+11610338 | Msa0535360:CDS |
| AACCAAGAGCTTCATCACAA+TGG | 0.641621 | 4_1:-11609235 | None:intergenic |
| GCTCTACCTTCACAGTGGCG+AGG | 0.646376 | 4_1:+11613928 | Msa0535360:CDS |
| AATTGTGATGGAGACCATTG+CGG | 0.675025 | 4_1:+11612264 | Msa0535360:CDS |
| TGTTTACAGGAGCTTCATGG+AGG | 0.713991 | 4_1:+11611111 | Msa0535360:CDS |
| AATCAAATATGTTCTGTACG+AGG | 0.739632 | 4_1:+11613207 | Msa0535360:CDS |
| AGGATGAGAGAAGCAAACAG+TGG | 0.743666 | 4_1:+11613857 | Msa0535360:intron |
| GGAAGGCTCTACCTTCACAG+TGG | 0.763082 | 4_1:+11613923 | Msa0535360:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTAATGATATATTGT+TGG | + | chr4_1:11610096-11610115 | Msa0535360:intron | 10.0% |
| !!! | TTTTTTAATGATATATTGTT+GGG | + | chr4_1:11610097-11610116 | Msa0535360:intron | 10.0% |
| !!! | AATATCTTTTAATTTTAACA+GGG | - | chr4_1:11612915-11612934 | None:intergenic | 10.0% |
| !! | ACAAACTAATAAATATAATA+AGG | + | chr4_1:11613727-11613746 | Msa0535360:intron | 10.0% |
| !!! | TTTTATTTCACTTTTTGTAA+AGG | + | chr4_1:11609508-11609527 | Msa0535360:intron | 15.0% |
| !!! | TTTATTTCACTTTTTGTAAA+GGG | + | chr4_1:11609509-11609528 | Msa0535360:intron | 15.0% |
| !! | TATGCAAAATATAATATGAA+AGG | + | chr4_1:11610800-11610819 | Msa0535360:intron | 15.0% |
| !!! | ATATAATATGAAAGGTTTTA+AGG | + | chr4_1:11610808-11610827 | Msa0535360:intron | 15.0% |
| !!! | TATAATATGAAAGGTTTTAA+GGG | + | chr4_1:11610809-11610828 | Msa0535360:intron | 15.0% |
| !!! | TTTTAATTAGATTTTCCATT+TGG | - | chr4_1:11610876-11610895 | None:intergenic | 15.0% |
| !! | AAAGAATATAAAAACAATGA+AGG | - | chr4_1:11611652-11611671 | None:intergenic | 15.0% |
| !! | ATATTCTTTATTGAATGATT+TGG | + | chr4_1:11611663-11611682 | Msa0535360:intron | 15.0% |
| !! | TATTCTTTATTGAATGATTT+GGG | + | chr4_1:11611664-11611683 | Msa0535360:intron | 15.0% |
| !! | ATATTCTTGTTAATTATTTC+AGG | + | chr4_1:11611878-11611897 | Msa0535360:intron | 15.0% |
| !!! | TTCATTTAAAATTTTGAGTT+AGG | + | chr4_1:11612405-11612424 | Msa0535360:intron | 15.0% |
| !!! | GAATATCTTTTAATTTTAAC+AGG | - | chr4_1:11612916-11612935 | None:intergenic | 15.0% |
| !! | TAAAAGATATTCTAAATCTA+TGG | + | chr4_1:11612924-11612943 | Msa0535360:intron | 15.0% |
| !! | TTGTAATTAACATACTTTAT+TGG | + | chr4_1:11613383-11613402 | Msa0535360:intron | 15.0% |
| !! | CACTAAATAATTACATATAA+TGG | + | chr4_1:11613665-11613684 | Msa0535360:intron | 15.0% |
| !! | AAAACAAAAAATTCATGTTA+TGG | - | chr4_1:11614332-11614351 | None:intergenic | 15.0% |
| !! | TTAAAAGAACATAAATTGAA+TGG | - | chr4_1:11614442-11614461 | None:intergenic | 15.0% |
| !!! | GATGAAATGTTAATTTTTAC+TGG | + | chr4_1:11609405-11609424 | Msa0535360:intron | 20.0% |
| !!! | TTTGTTTCATTTTTTGTTGT+TGG | + | chr4_1:11609429-11609448 | Msa0535360:intron | 20.0% |
| !!! | TTGTTTCATTTTTTGTTGTT+GGG | + | chr4_1:11609430-11609449 | Msa0535360:intron | 20.0% |
| !!! | TTCTTAAGTGTAGTTTTTAT+TGG | + | chr4_1:11609608-11609627 | Msa0535360:intron | 20.0% |
| !!! | GAAATATGGTATTTTTTGTT+TGG | + | chr4_1:11609742-11609761 | Msa0535360:intron | 20.0% |
| !!! | GAAGTTTTTTTATTCTAGTT+TGG | + | chr4_1:11610487-11610506 | Msa0535360:intron | 20.0% |
| !! | TCATATTCTCAAATTATTAC+TGG | + | chr4_1:11610685-11610704 | Msa0535360:intron | 20.0% |
| !! | TAAAAACATCCAAAAACAAT+TGG | - | chr4_1:11610958-11610977 | None:intergenic | 20.0% |
| !!! | TGAGTATTATTCACATATTT+TGG | - | chr4_1:11611954-11611973 | None:intergenic | 20.0% |
| !! | AAATGGAGAAATTTAGAAAA+CGG | - | chr4_1:11613045-11613064 | None:intergenic | 20.0% |
| !!! | TCCATTTCTTTTATTTTCTT+TGG | + | chr4_1:11613058-11613077 | Msa0535360:intron | 20.0% |
| !!! | CCATTTCTTTTATTTTCTTT+GGG | + | chr4_1:11613059-11613078 | Msa0535360:intron | 20.0% |
| !!! | ATGTTGATAAATGTTTTAGA+AGG | + | chr4_1:11613300-11613319 | Msa0535360:intron | 20.0% |
| !! | ATGATGAAAAAATCCAATAT+AGG | + | chr4_1:11613419-11613438 | Msa0535360:intron | 20.0% |
| !! | TGATGAAAAAATCCAATATA+GGG | + | chr4_1:11613420-11613439 | Msa0535360:intron | 20.0% |
| !! | GAACATAAATCAAAGATATA+CGG | - | chr4_1:11613785-11613804 | None:intergenic | 20.0% |
| !! | CTTAAAAAAGTTAATAACTC+GGG | - | chr4_1:11614212-11614231 | None:intergenic | 20.0% |
| !! | CCTTAAAAAAGTTAATAACT+CGG | - | chr4_1:11614213-11614232 | None:intergenic | 20.0% |
| !! | TCTTTATGATAAAATGTCAT+TGG | + | chr4_1:11614282-11614301 | Msa0535360:three_prime_UTR | 20.0% |
| ! | AAAAATTCTCAGAAACCAAA+GGG | - | chr4_1:11609351-11609370 | None:intergenic | 25.0% |
| ! | AAAAAATTCTCAGAAACCAA+AGG | - | chr4_1:11609352-11609371 | None:intergenic | 25.0% |
| !!! | AAAGGGTTGTGTTTTTTTAT+TGG | + | chr4_1:11609526-11609545 | Msa0535360:intron | 25.0% |
| !!! | CTTATTTTACTAAGTGGATT+CGG | - | chr4_1:11609872-11609891 | None:intergenic | 25.0% |
| ! | GAATCCACTTAGTAAAATAA+GGG | + | chr4_1:11609871-11609890 | Msa0535360:intron | 25.0% |
| !!! | GATTTTGTGCATTTGTTATT+TGG | + | chr4_1:11610026-11610045 | Msa0535360:intron | 25.0% |
| ! | AAACTAAATTGTGATTCTGT+AGG | + | chr4_1:11610245-11610264 | Msa0535360:intron | 25.0% |
| !! | TAGTTTGGTTCAATATGAAA+GGG | + | chr4_1:11610502-11610521 | Msa0535360:intron | 25.0% |
| !!! | AAAGGTTTTAAGGGTAATAA+AGG | + | chr4_1:11610818-11610837 | Msa0535360:intron | 25.0% |
| !! | GTACAATTACCAATTGTTTT+TGG | + | chr4_1:11610946-11610965 | Msa0535360:intron | 25.0% |
| !!! | TCTACTATGTCTTCTTTTTT+CGG | + | chr4_1:11611004-11611023 | Msa0535360:intron | 25.0% |
| ! | GATTATAGCTAATGAACTTA+AGG | + | chr4_1:11611048-11611067 | Msa0535360:CDS | 25.0% |
| !!! | AATATACGTAATGGACATTT+TGG | - | chr4_1:11611087-11611106 | None:intergenic | 25.0% |
| ! | AAATGTCCATTACGTATATT+TGG | + | chr4_1:11611087-11611106 | Msa0535360:CDS | 25.0% |
| ! | TTTCTCTTGCAATAATAACA+GGG | + | chr4_1:11611330-11611349 | Msa0535360:intron | 25.0% |
| !!! | AGTTAGCTTAGCTTTATATA+GGG | - | chr4_1:11611363-11611382 | None:intergenic | 25.0% |
| ! | AAATTAAATCCAAAAACACG+TGG | - | chr4_1:11611732-11611751 | None:intergenic | 25.0% |
| !!! | GTATTATTCACATATTTTGG+AGG | - | chr4_1:11611951-11611970 | None:intergenic | 25.0% |
| !! | AAGAAAATGAAGCATTTCAT+CGG | + | chr4_1:11612036-11612055 | Msa0535360:CDS | 25.0% |
| ! | TCATTTCCTTGATATTCTTA+GGG | - | chr4_1:11612130-11612149 | None:intergenic | 25.0% |
| ! | AAAACTAAAATTTCTCCAGA+AGG | - | chr4_1:11612307-11612326 | None:intergenic | 25.0% |
| ! | TCATACAAAATGTTAGAAGA+GGG | - | chr4_1:11612367-11612386 | None:intergenic | 25.0% |
| !!! | TTTTTTGTTGCAAATTTTCG+TGG | + | chr4_1:11612530-11612549 | Msa0535360:intron | 25.0% |
| ! | AAACTTCAAATCATGATTTC+AGG | - | chr4_1:11612581-11612600 | None:intergenic | 25.0% |
| !! | TACAAATTTTTCATTCAAGC+TGG | + | chr4_1:11612670-11612689 | Msa0535360:intron | 25.0% |
| ! | AATAATTATAGAACTCTCTG+TGG | - | chr4_1:11612793-11612812 | None:intergenic | 25.0% |
| ! | CTATAATTATTGCAGTAATC+AGG | + | chr4_1:11612802-11612821 | Msa0535360:intron | 25.0% |
| ! | GTTCCTATATAATAGAACAT+TGG | - | chr4_1:11613009-11613028 | None:intergenic | 25.0% |
| ! | AATGGAGAAATTTAGAAAAC+GGG | - | chr4_1:11613044-11613063 | None:intergenic | 25.0% |
| ! | CCCAAAGAAAATAAAAGAAA+TGG | - | chr4_1:11613062-11613081 | None:intergenic | 25.0% |
| ! | GTATGTTAATTACAACAATC+TGG | - | chr4_1:11613378-11613397 | None:intergenic | 25.0% |
| ! | GTTGGAAAATTATACTTACA+AGG | - | chr4_1:11613538-11613557 | None:intergenic | 25.0% |
| !! | TGATTTATGTCCTTATTTCT+AGG | + | chr4_1:11613703-11613722 | Msa0535360:intron | 25.0% |
| !!! | TTAGTTTGTTCCTAGAAATA+AGG | - | chr4_1:11613716-11613735 | None:intergenic | 25.0% |
| ! | TACGGATATATTTGTGAATA+AGG | - | chr4_1:11613767-11613786 | None:intergenic | 25.0% |
| ! | GAAATGTTCTGCAAAATTAA+TGG | - | chr4_1:11614119-11614138 | None:intergenic | 25.0% |
| !! | GTTTTATGATTGCATTAAAG+AGG | + | chr4_1:11614147-11614166 | Msa0535360:three_prime_UTR | 25.0% |
| !!! | CCGAGTTATTAACTTTTTTA+AGG | + | chr4_1:11614210-11614229 | Msa0535360:three_prime_UTR | 25.0% |
| ! | CTTTCTTCACTAATGTATTA+TGG | + | chr4_1:11614255-11614274 | Msa0535360:three_prime_UTR | 25.0% |
| !!! | TCATTGGTTTTTGTTTAATC+AGG | + | chr4_1:11614298-11614317 | Msa0535360:three_prime_UTR | 25.0% |
| ! | TGAATGGAACTAATAAAGTA+GGG | - | chr4_1:11614426-11614445 | None:intergenic | 25.0% |
| ! | TTGAATGGAACTAATAAAGT+AGG | - | chr4_1:11614427-11614446 | None:intergenic | 25.0% |
| ! | AAAACTAGAGGAGAGATTTT+AGG | + | chr4_1:11608976-11608995 | Msa0535360:five_prime_UTR | 30.0% |
| AATCCAAAAGTCATATGATG+TGG | + | chr4_1:11609015-11609034 | Msa0535360:exon | 30.0% | |
| ATCCAAAAGTCATATGATGT+GGG | + | chr4_1:11609016-11609035 | Msa0535360:exon | 30.0% | |
| AAAATTCTCAGAAACCAAAG+GGG | - | chr4_1:11609350-11609369 | None:intergenic | 30.0% | |
| !! | TCATTTGACTTGTTGTGAAA+TGG | + | chr4_1:11609706-11609725 | Msa0535360:intron | 30.0% |
| CGAATCCACTTAGTAAAATA+AGG | + | chr4_1:11609870-11609889 | Msa0535360:intron | 30.0% | |
| AAACAAACCAATATCTCACT+GGG | - | chr4_1:11609951-11609970 | None:intergenic | 30.0% | |
| TAAACAAACCAATATCTCAC+TGG | - | chr4_1:11609952-11609971 | None:intergenic | 30.0% | |
| !! | AGTGAGATATTGGTTTGTTT+AGG | + | chr4_1:11609951-11609970 | Msa0535360:intron | 30.0% |
| TAATGATATATTGTTGGGAG+AGG | + | chr4_1:11610102-11610121 | Msa0535360:intron | 30.0% | |
| ! | ACCTATATTTTATGAAGTGC+TGG | + | chr4_1:11610440-11610459 | Msa0535360:intron | 30.0% |
| ACCAGCACTTCATAAAATAT+AGG | - | chr4_1:11610444-11610463 | None:intergenic | 30.0% | |
| ! | CTAGTTTGGTTCAATATGAA+AGG | + | chr4_1:11610501-11610520 | Msa0535360:intron | 30.0% |
| ATGAAAGCAAAAATTGAGTG+AGG | - | chr4_1:11610562-11610581 | None:intergenic | 30.0% | |
| ! | TTTTTGCTTTCATGCAATAC+TGG | + | chr4_1:11610569-11610588 | Msa0535360:intron | 30.0% |
| ! | TTTTGCTTTCATGCAATACT+GGG | + | chr4_1:11610570-11610589 | Msa0535360:intron | 30.0% |
| TTGAATGTAATCACATGTGT+CGG | - | chr4_1:11610662-11610681 | None:intergenic | 30.0% | |
| ATTCACACTGTTTGTTTCAA+AGG | - | chr4_1:11610914-11610933 | None:intergenic | 30.0% | |
| AAACAGCCAAATATACGTAA+TGG | - | chr4_1:11611096-11611115 | None:intergenic | 30.0% | |
| GTACATTGATATCTCAATCT+TGG | + | chr4_1:11611241-11611260 | Msa0535360:intron | 30.0% | |
| TCATGAAAACAGAGTAAAGA+CGG | + | chr4_1:11611267-11611286 | Msa0535360:intron | 30.0% | |
| CTTTCTCTTGCAATAATAAC+AGG | + | chr4_1:11611329-11611348 | Msa0535360:intron | 30.0% | |
| !! | GAGTTAGCTTAGCTTTATAT+AGG | - | chr4_1:11611364-11611383 | None:intergenic | 30.0% |
| ! | TAGTTGACTCACTTAACTAA+TGG | + | chr4_1:11611416-11611435 | Msa0535360:intron | 30.0% |
| ! | TTGATTGATTCCATTGTCTA+CGG | - | chr4_1:11611913-11611932 | None:intergenic | 30.0% |
| ! | AGAAAATGAAGCATTTCATC+GGG | + | chr4_1:11612037-11612056 | Msa0535360:CDS | 30.0% |
| CTCATTTCCTTGATATTCTT+AGG | - | chr4_1:11612131-11612150 | None:intergenic | 30.0% | |
| CTAAGAATATCAAGGAAATG+AGG | + | chr4_1:11612129-11612148 | Msa0535360:intron | 30.0% | |
| AAACAACGAAAAGGTAAAAC+AGG | - | chr4_1:11612175-11612194 | None:intergenic | 30.0% | |
| GTCATACAAAATGTTAGAAG+AGG | - | chr4_1:11612368-11612387 | None:intergenic | 30.0% | |
| CAAGCATCAAATCATGATTT+CGG | - | chr4_1:11612451-11612470 | None:intergenic | 30.0% | |
| TTGAAGTTTGAACAAGTACT+TGG | + | chr4_1:11612592-11612611 | Msa0535360:intron | 30.0% | |
| ! | AAATTTTTCATTCAAGCTGG+TGG | + | chr4_1:11612673-11612692 | Msa0535360:intron | 30.0% |
| AGTAACAGTTATCATCTAGT+CGG | - | chr4_1:11612736-11612755 | None:intergenic | 30.0% | |
| AATTATTGCAGTAATCAGGT+AGG | + | chr4_1:11612806-11612825 | Msa0535360:intron | 30.0% | |
| ! | TTTTTAACACATAGCATCCA+TGG | - | chr4_1:11612841-11612860 | None:intergenic | 30.0% |
| GGACCAATGTTCTATTATAT+AGG | + | chr4_1:11613003-11613022 | Msa0535360:intron | 30.0% | |
| TTTGGGTATTACTGTATTAG+CGG | + | chr4_1:11613076-11613095 | Msa0535360:intron | 30.0% | |
| !!! | ACTGATTTTATTTTCTGCAG+TGG | + | chr4_1:11613137-11613156 | Msa0535360:intron | 30.0% |
| ACAGAACATATTTGATTGGT+GGG | - | chr4_1:11613204-11613223 | None:intergenic | 30.0% | |
| TACAGAACATATTTGATTGG+TGG | - | chr4_1:11613205-11613224 | None:intergenic | 30.0% | |
| TCGTACAGAACATATTTGAT+TGG | - | chr4_1:11613208-11613227 | None:intergenic | 30.0% | |
| AATCAAATATGTTCTGTACG+AGG | + | chr4_1:11613207-11613226 | Msa0535360:CDS | 30.0% | |
| !! | AAAACAAAAGCACCCTATAT+TGG | - | chr4_1:11613435-11613454 | None:intergenic | 30.0% |
| ACACAACAAAACAACCTTAA+TGG | - | chr4_1:11613565-11613584 | None:intergenic | 30.0% | |
| TTGTTGTGTGTCACAAATAA+TGG | + | chr4_1:11613576-11613595 | Msa0535360:intron | 30.0% | |
| ! | CTTTCTCATTGTTATTCCTT+CGG | + | chr4_1:11613607-11613626 | Msa0535360:intron | 30.0% |
| TATTCCTTCGGTATATATAG+AGG | + | chr4_1:11613619-11613638 | Msa0535360:intron | 30.0% | |
| TTGTAACAAGTCAAACACTA+TGG | + | chr4_1:11614092-11614111 | Msa0535360:three_prime_UTR | 30.0% | |
| GTGGAAATGGAATTGGAATT+TGG | - | chr4_1:11609078-11609097 | None:intergenic | 35.0% | |
| AAATTCTCAGAAACCAAAGG+GGG | - | chr4_1:11609349-11609368 | None:intergenic | 35.0% | |
| GCAATTCCGATAGTTGTATT+AGG | + | chr4_1:11609805-11609824 | Msa0535360:intron | 35.0% | |
| !!! | CCAACCCTTATTTTACTAAG+TGG | - | chr4_1:11609878-11609897 | None:intergenic | 35.0% |
| CCACTTAGTAAAATAAGGGT+TGG | + | chr4_1:11609875-11609894 | Msa0535360:intron | 35.0% | |
| ATTTGGTTGCTGAGAAAATG+TGG | + | chr4_1:11610043-11610062 | Msa0535360:intron | 35.0% | |
| TTGCTGAGAAAATGTGGATA+AGG | + | chr4_1:11610049-11610068 | Msa0535360:intron | 35.0% | |
| TGCTGAGAAAATGTGGATAA+GGG | + | chr4_1:11610050-11610069 | Msa0535360:intron | 35.0% | |
| AATTGTGATTCTGTAGGTGT+TGG | + | chr4_1:11610251-11610270 | Msa0535360:intron | 35.0% | |
| ! | AAAGGATTTGAGGAGGTTTT+TGG | + | chr4_1:11610345-11610364 | Msa0535360:CDS | 35.0% |
| ! | AAGGATTTGAGGAGGTTTTT+GGG | + | chr4_1:11610346-11610365 | Msa0535360:CDS | 35.0% |
| ! | TTTGGTTCAATATGAAAGGG+AGG | + | chr4_1:11610505-11610524 | Msa0535360:intron | 35.0% |
| TTGGTTCAATATGAAAGGGA+GGG | + | chr4_1:11610506-11610525 | Msa0535360:intron | 35.0% | |
| TATGAAAGGGAGGGTAATAA+AGG | + | chr4_1:11610515-11610534 | Msa0535360:intron | 35.0% | |
| ATGAAAGGGAGGGTAATAAA+GGG | + | chr4_1:11610516-11610535 | Msa0535360:intron | 35.0% | |
| TGAAACACTAACATAGACAC+CGG | - | chr4_1:11610733-11610752 | None:intergenic | 35.0% | |
| TTTCCATTTGGTTAGAAGAG+AGG | - | chr4_1:11610864-11610883 | None:intergenic | 35.0% | |
| ACACTGTTTGTTTCAAAGGA+GGG | - | chr4_1:11610910-11610929 | None:intergenic | 35.0% | |
| TGGTAATTGTACCAAAACAG+AGG | - | chr4_1:11610938-11610957 | None:intergenic | 35.0% | |
| !! | TTTTTCGGTGTGTAGCATTT+TGG | + | chr4_1:11611019-11611038 | Msa0535360:intron | 35.0% |
| ACGTATATTTGGCTGTTTAC+AGG | + | chr4_1:11611098-11611117 | Msa0535360:CDS | 35.0% | |
| AAACATTGTAGTACCTTGCT+TGG | + | chr4_1:11611178-11611197 | Msa0535360:intron | 35.0% | |
| CAGAAAAATTTGACCAAGCA+AGG | - | chr4_1:11611194-11611213 | None:intergenic | 35.0% | |
| GATATCAATGTACCAAGCAA+GGG | - | chr4_1:11611234-11611253 | None:intergenic | 35.0% | |
| AGATATCAATGTACCAAGCA+AGG | - | chr4_1:11611235-11611254 | None:intergenic | 35.0% | |
| TAGGTTCTCTCAGAATATCT+TGG | - | chr4_1:11611551-11611570 | None:intergenic | 35.0% | |
| CAATTCTGTCTCACAACATA+AGG | - | chr4_1:11611705-11611724 | None:intergenic | 35.0% | |
| ! | AATTGAGAACCACGTGTTTT+TGG | + | chr4_1:11611720-11611739 | Msa0535360:intron | 35.0% |
| !! | TATTCACATATTTTGGAGGC+TGG | - | chr4_1:11611947-11611966 | None:intergenic | 35.0% |
| ACTCATTTATCCTCAAGAGT+AGG | + | chr4_1:11611969-11611988 | Msa0535360:CDS | 35.0% | |
| ATTTATCCTCAAGAGTAGGA+AGG | + | chr4_1:11611973-11611992 | Msa0535360:CDS | 35.0% | |
| ATTAAACCTTCCTACTCTTG+AGG | - | chr4_1:11611982-11612001 | None:intergenic | 35.0% | |
| AAGAGTAGGAAGGTTTAATC+TGG | + | chr4_1:11611983-11612002 | Msa0535360:CDS | 35.0% | |
| TAGGAAGGTTTAATCTGGAT+TGG | + | chr4_1:11611988-11612007 | Msa0535360:CDS | 35.0% | |
| TTCTTTCTCAGATGACTGAT+CGG | - | chr4_1:11612021-11612040 | None:intergenic | 35.0% | |
| TCTGAACCCTAAGAATATCA+AGG | + | chr4_1:11612121-11612140 | Msa0535360:intron | 35.0% | |
| TCGTTCAGAAAACAACGAAA+AGG | - | chr4_1:11612184-11612203 | None:intergenic | 35.0% | |
| AATTTCTCCAGAAGGATCAA+CGG | - | chr4_1:11612299-11612318 | None:intergenic | 35.0% | |
| TACAAAATGTTAGAAGAGGG+AGG | - | chr4_1:11612364-11612383 | None:intergenic | 35.0% | |
| GTTAAAAACCGTCACTGTAA+TGG | + | chr4_1:11612853-11612872 | Msa0535360:intron | 35.0% | |
| GTACCAATATGACTATAGAC+AGG | + | chr4_1:11612946-11612965 | Msa0535360:intron | 35.0% | |
| CAACCTGTCTATAGTCATAT+TGG | - | chr4_1:11612952-11612971 | None:intergenic | 35.0% | |
| CTTCACTTATTTGAGCTTGA+GGG | + | chr4_1:11613163-11613182 | Msa0535360:CDS | 35.0% | |
| TTCACTTATTTGAGCTTGAG+GGG | + | chr4_1:11613164-11613183 | Msa0535360:CDS | 35.0% | |
| TTCTCAAGTAGTCTCCAATA+GGG | + | chr4_1:11613276-11613295 | Msa0535360:intron | 35.0% | |
| CATTTATCAACATGCCCTAT+TGG | - | chr4_1:11613293-11613312 | None:intergenic | 35.0% | |
| !!! | GGCTTTTATTGGCTTTGTTT+TGG | + | chr4_1:11613335-11613354 | Msa0535360:intron | 35.0% |
| ! | ATTTTCCAACTGCACCATTA+AGG | + | chr4_1:11613548-11613567 | Msa0535360:intron | 35.0% |
| CGAAGGAATAACAATGAGAA+AGG | - | chr4_1:11613609-11613628 | None:intergenic | 35.0% | |
| GTAACCTCTATATATACCGA+AGG | - | chr4_1:11613626-11613645 | None:intergenic | 35.0% | |
| CGGTATATATAGAGGTTACA+AGG | + | chr4_1:11613627-11613646 | Msa0535360:intron | 35.0% | |
| ! | CTTTTCTCAATATTCTCCAC+AGG | + | chr4_1:11613837-11613856 | Msa0535360:intron | 35.0% |
| ATATGGACAAAAACACAACC+AGG | - | chr4_1:11613991-11614010 | None:intergenic | 35.0% | |
| !! | TGTGTTTTTGTCCATATGAG+TGG | + | chr4_1:11613994-11614013 | Msa0535360:CDS | 35.0% |
| ! | GTCCATATGAGTGGATTTAT+TGG | + | chr4_1:11614003-11614022 | Msa0535360:CDS | 35.0% |
| ! | CATATGAGTGGATTTATTGG+CGG | + | chr4_1:11614006-11614025 | Msa0535360:CDS | 35.0% |
| !! | AAAAGCTGCTTTGAAGATGT+AGG | + | chr4_1:11614062-11614081 | Msa0535360:CDS | 35.0% |
| ! | TGCCCACATCATATGACTTT+TGG | - | chr4_1:11609021-11609040 | None:intergenic | 40.0% |
| AAGTGCTTCTGCTTGTACTT+GGG | - | chr4_1:11609104-11609123 | None:intergenic | 40.0% | |
| TGTCTAACGCTAAAACAGCT+AGG | + | chr4_1:11609144-11609163 | Msa0535360:CDS | 40.0% | |
| GTCTAACGCTAAAACAGCTA+GGG | + | chr4_1:11609145-11609164 | Msa0535360:CDS | 40.0% | |
| ACAATGGAAGCTACCATTGT+GGG | - | chr4_1:11609222-11609241 | None:intergenic | 40.0% | |
| TTCCATTGTGATGAAGCTCT+TGG | + | chr4_1:11609233-11609252 | Msa0535360:CDS | 40.0% | |
| AACCAAGAGCTTCATCACAA+TGG | - | chr4_1:11609238-11609257 | None:intergenic | 40.0% | |
| AATTCTCAGAAACCAAAGGG+GGG | - | chr4_1:11609348-11609367 | None:intergenic | 40.0% | |
| ! | GTGTTGTTGCTGAGGAAATA+TGG | + | chr4_1:11609728-11609747 | Msa0535360:intron | 40.0% |
| CAGCGACCTAATACAACTAT+CGG | - | chr4_1:11609814-11609833 | None:intergenic | 40.0% | |
| GTATTAGGTCGCTGACAAAA+TGG | + | chr4_1:11609820-11609839 | Msa0535360:intron | 40.0% | |
| TGAGAAAATGTGGATAAGGG+TGG | + | chr4_1:11610053-11610072 | Msa0535360:intron | 40.0% | |
| !!! | TGATGTTTTTAGCTTGCTGC+TGG | + | chr4_1:11610131-11610150 | Msa0535360:intron | 40.0% |
| ! | TTGCTGCTGGTGTTTCTTTT+TGG | + | chr4_1:11610144-11610163 | Msa0535360:intron | 40.0% |
| CTTGATGCTGTTCTTGATGT+TGG | + | chr4_1:11610279-11610298 | Msa0535360:CDS | 40.0% | |
| ATGCTGTTCTTGATGTTGGA+GGG | + | chr4_1:11610283-11610302 | Msa0535360:CDS | 40.0% | |
| GTGATGATCATAACGATCTC+GGG | - | chr4_1:11610322-11610341 | None:intergenic | 40.0% | |
| GGTGATGATCATAACGATCT+CGG | - | chr4_1:11610323-11610342 | None:intergenic | 40.0% | |
| CGTTATGATCATCACCAGAA+AGG | + | chr4_1:11610327-11610346 | Msa0535360:CDS | 40.0% | |
| TCATCACCAGAAAGGATTTG+AGG | + | chr4_1:11610335-11610354 | Msa0535360:CDS | 40.0% | |
| AAACCTCCTCAAATCCTTTC+TGG | - | chr4_1:11610344-11610363 | None:intergenic | 40.0% | |
| !! | CAGTGCTGGTCTTGTTTATA+AGG | + | chr4_1:11610392-11610411 | Msa0535360:CDS | 40.0% |
| ! | TGCTGGTTGAAGTGAAATAG+AGG | + | chr4_1:11610457-11610476 | Msa0535360:intron | 40.0% |
| GCTGGTTGAAGTGAAATAGA+GGG | + | chr4_1:11610458-11610477 | Msa0535360:intron | 40.0% | |
| GTTGAAGTGAAATAGAGGGA+GGG | + | chr4_1:11610462-11610481 | Msa0535360:intron | 40.0% | |
| CACTGTTTGTTTCAAAGGAG+GGG | - | chr4_1:11610909-11610928 | None:intergenic | 40.0% | |
| CACACTGTTTGTTTCAAAGG+AGG | - | chr4_1:11610911-11610930 | None:intergenic | 40.0% | |
| ! | CAGTGTGAATTCCTCTGTTT+TGG | + | chr4_1:11610924-11610943 | Msa0535360:intron | 40.0% |
| TTAAAACAGAGTCCCTTGCT+TGG | + | chr4_1:11611219-11611238 | Msa0535360:intron | 40.0% | |
| GTAAAGACGGAGAATTGAAG+AGG | + | chr4_1:11611280-11611299 | Msa0535360:intron | 40.0% | |
| ! | TTTGATAATCGCCTGCAGAA+TGG | + | chr4_1:11611749-11611768 | Msa0535360:intron | 40.0% |
| GTTCGTTAGTCCTCTTAAAG+TGG | + | chr4_1:11611792-11611811 | Msa0535360:intron | 40.0% | |
| ! | CACTAATCAGCCACTTTAAG+AGG | - | chr4_1:11611805-11611824 | None:intergenic | 40.0% |
| TCTTTCTCAGATGACTGATC+GGG | - | chr4_1:11612020-11612039 | None:intergenic | 40.0% | |
| TGAAAACGAACACTCTGCAA+AGG | - | chr4_1:11612217-11612236 | None:intergenic | 40.0% | |
| ACCAGCAAAGTCAATTGTGA+TGG | + | chr4_1:11612252-11612271 | Msa0535360:CDS | 40.0% | |
| ! | TCCATCACAATTGACTTTGC+TGG | - | chr4_1:11612256-11612275 | None:intergenic | 40.0% |
| ! | AATTGTGATGGAGACCATTG+CGG | + | chr4_1:11612264-11612283 | Msa0535360:CDS | 40.0% |
| GGCAAGAATAATCAACTCAC+AGG | - | chr4_1:11612343-11612362 | None:intergenic | 40.0% | |
| GAACATAGCCATTACAGTGA+CGG | - | chr4_1:11612864-11612883 | None:intergenic | 40.0% | |
| !!! | CTGTTGTTTTTGTCCCAGAA+TGG | + | chr4_1:11612972-11612991 | Msa0535360:intron | 40.0% |
| AGCGGCATTATACTAAGTAC+TGG | + | chr4_1:11613094-11613113 | Msa0535360:intron | 40.0% | |
| GCTTCACTTATTTGAGCTTG+AGG | + | chr4_1:11613162-11613181 | Msa0535360:CDS | 40.0% | |
| TCACTTATTTGAGCTTGAGG+GGG | + | chr4_1:11613165-11613184 | Msa0535360:CDS | 40.0% | |
| GTTCTCAAGTAGTCTCCAAT+AGG | + | chr4_1:11613275-11613294 | Msa0535360:intron | 40.0% | |
| !! | TTTTAGAAGGACCGCTAAGT+TGG | + | chr4_1:11613313-11613332 | Msa0535360:intron | 40.0% |
| TTTAGAAGGACCGCTAAGTT+GGG | + | chr4_1:11613314-11613333 | Msa0535360:intron | 40.0% | |
| CCAATAAAAGCCCAACTTAG+CGG | - | chr4_1:11613327-11613346 | None:intergenic | 40.0% | |
| AAGGAAATGAGCAAATGCAG+AGG | - | chr4_1:11613519-11613538 | None:intergenic | 40.0% | |
| AACAACCTTAATGGTGCAGT+TGG | - | chr4_1:11613556-11613575 | None:intergenic | 40.0% | |
| CGCCAATAAATCCACTCATA+TGG | - | chr4_1:11614008-11614027 | None:intergenic | 40.0% | |
| ! | CCAAAGCACCTTCAAAAGTT+TGG | - | chr4_1:11614035-11614054 | None:intergenic | 40.0% |
| !!! | CCAAACTTTTGAAGGTGCTT+TGG | + | chr4_1:11614032-11614051 | Msa0535360:CDS | 40.0% |
| !! | TGCTTTGAAGATGTAGGCAA+AGG | + | chr4_1:11614068-11614087 | Msa0535360:exon | 40.0% |
| GATTGCATTAAAGAGGCAGA+TGG | + | chr4_1:11614154-11614173 | Msa0535360:three_prime_UTR | 40.0% | |
| CATTAAAGAGGCAGATGGAT+GGG | + | chr4_1:11614159-11614178 | Msa0535360:three_prime_UTR | 40.0% | |
| TGGGGAAGTGGAAATGGAAT+TGG | - | chr4_1:11609085-11609104 | None:intergenic | 45.0% | |
| TGTACTTGGGGAAGTGGAAA+TGG | - | chr4_1:11609091-11609110 | None:intergenic | 45.0% | |
| AGTGCTTCTGCTTGTACTTG+GGG | - | chr4_1:11609103-11609122 | None:intergenic | 45.0% | |
| ! | GAAGTGCTTCTGCTTGTACT+TGG | - | chr4_1:11609105-11609124 | None:intergenic | 45.0% |
| CACAATGGAAGCTACCATTG+TGG | - | chr4_1:11609223-11609242 | None:intergenic | 45.0% | |
| !! | GTGAAATGGTGTTGTTGCTG+AGG | + | chr4_1:11609720-11609739 | Msa0535360:intron | 45.0% |
| ! | ACTAAGTGGATTCGGCTACA+TGG | - | chr4_1:11609864-11609883 | None:intergenic | 45.0% |
| TGAGCAACCCAGTGAGATAT+TGG | + | chr4_1:11609941-11609960 | Msa0535360:intron | 45.0% | |
| !!! | GGTGGTGCTTTTAGAGTGTT+TGG | + | chr4_1:11610071-11610090 | Msa0535360:intron | 45.0% |
| !! | TGTGATTCTGTAGGTGTTGG+AGG | + | chr4_1:11610254-11610273 | Msa0535360:intron | 45.0% |
| !! | GTGATTCTGTAGGTGTTGGA+GGG | + | chr4_1:11610255-11610274 | Msa0535360:intron | 45.0% |
| GATGCTGTTCTTGATGTTGG+AGG | + | chr4_1:11610282-11610301 | Msa0535360:CDS | 45.0% | |
| TGCTGTTCTTGATGTTGGAG+GGG | + | chr4_1:11610284-11610303 | Msa0535360:CDS | 45.0% | |
| TCACCAGAAAGGATTTGAGG+AGG | + | chr4_1:11610338-11610357 | Msa0535360:CDS | 45.0% | |
| !! | TTTGAGGAGGTTTTTGGGCA+TGG | + | chr4_1:11610351-11610370 | Msa0535360:CDS | 45.0% |
| GGTTGAAGTGAAATAGAGGG+AGG | + | chr4_1:11610461-11610480 | Msa0535360:intron | 45.0% | |
| ! | CTTTTGATCGACAACGTGTC+TGG | + | chr4_1:11610622-11610641 | Msa0535360:intron | 45.0% |
| CCATTTGGTTAGAAGAGAGG+AGG | - | chr4_1:11610861-11610880 | None:intergenic | 45.0% | |
| CCTCCTCTCTTCTAACCAAA+TGG | + | chr4_1:11610858-11610877 | Msa0535360:intron | 45.0% | |
| TGTTTACAGGAGCTTCATGG+AGG | + | chr4_1:11611111-11611130 | Msa0535360:CDS | 45.0% | |
| CTGATAGCTGTCAGTCAGTA+AGG | - | chr4_1:11611395-11611414 | None:intergenic | 45.0% | |
| GACTCACACTGTTGCATATC+GGG | - | chr4_1:11611472-11611491 | None:intergenic | 45.0% | |
| CGACTCACACTGTTGCATAT+CGG | - | chr4_1:11611473-11611492 | None:intergenic | 45.0% | |
| ACAGTGTGAGTCGCAGAATT+AGG | + | chr4_1:11611480-11611499 | Msa0535360:intron | 45.0% | |
| !! | ACTCGCTCACTGACTTACTA+AGG | + | chr4_1:11611585-11611604 | Msa0535360:intron | 45.0% |
| !! | CTCGCTCACTGACTTACTAA+GGG | + | chr4_1:11611586-11611605 | Msa0535360:intron | 45.0% |
| !! | TCGCTCACTGACTTACTAAG+GGG | + | chr4_1:11611587-11611606 | Msa0535360:intron | 45.0% |
| GCAATTGATGCCGTAGACAA+TGG | + | chr4_1:11611900-11611919 | Msa0535360:CDS | 45.0% | |
| ! | TTCGTTTTCACGTGAACTCG+TGG | + | chr4_1:11612227-11612246 | Msa0535360:CDS | 45.0% |
| AGACAAACCGTTGATCCTTC+TGG | + | chr4_1:11612289-11612308 | Msa0535360:CDS | 45.0% | |
| TAACTGTTACTGCCTGTGAC+TGG | + | chr4_1:11612745-11612764 | Msa0535360:intron | 45.0% | |
| AAGAACAACCAACCAGTCAC+AGG | - | chr4_1:11612760-11612779 | None:intergenic | 45.0% | |
| CAGGTAGGAAAACAACACCA+TGG | + | chr4_1:11612821-11612840 | Msa0535360:intron | 45.0% | |
| TTGTCCCAGAATGGTCATCA+TGG | + | chr4_1:11612981-11613000 | Msa0535360:intron | 45.0% | |
| TGTCCCAGAATGGTCATCAT+GGG | + | chr4_1:11612982-11613001 | Msa0535360:intron | 45.0% | |
| !! | CCGCTAAGTTGGGCTTTTAT+TGG | + | chr4_1:11613324-11613343 | Msa0535360:intron | 45.0% |
| TGTTTGCTTCTCTCATCCTG+TGG | - | chr4_1:11613856-11613875 | None:intergenic | 45.0% | |
| AGGATGAGAGAAGCAAACAG+TGG | + | chr4_1:11613857-11613876 | Msa0535360:intron | 45.0% | |
| ! | GGCGGAAACCAAACTTTTGA+AGG | + | chr4_1:11614024-11614043 | Msa0535360:CDS | 45.0% |
| !!! | TTTTGAAGGTGCTTTGGCCA+TGG | + | chr4_1:11614038-11614057 | Msa0535360:CDS | 45.0% |
| ! | CTTCAAAGCAGCTTTTGCCA+TGG | - | chr4_1:11614058-11614077 | None:intergenic | 45.0% |
| GCATTAAAGAGGCAGATGGA+TGG | + | chr4_1:11614158-11614177 | Msa0535360:three_prime_UTR | 45.0% | |
| TCTGCTTGTACTTGGGGAAG+TGG | - | chr4_1:11609097-11609116 | None:intergenic | 50.0% | |
| TTGAGAGACGCGTGAGAAGA+AGG | - | chr4_1:11609188-11609207 | None:intergenic | 50.0% | |
| AAACCAAAGGGGGGTTGAGA+GGG | - | chr4_1:11609339-11609358 | None:intergenic | 50.0% | |
| TGATCATAACGATCTCGGGC+AGG | - | chr4_1:11610318-11610337 | None:intergenic | 50.0% | |
| ! | TCCACTAAGTTGAGCAGTGC+TGG | + | chr4_1:11610378-11610397 | Msa0535360:CDS | 50.0% |
| ACCAGCACTGCTCAACTTAG+TGG | - | chr4_1:11610382-11610401 | None:intergenic | 50.0% | |
| GGCTGTTTACAGGAGCTTCA+TGG | + | chr4_1:11611108-11611127 | Msa0535360:CDS | 50.0% | |
| AATCGCCTGCAGAATGGCTT+AGG | + | chr4_1:11611755-11611774 | Msa0535360:intron | 50.0% | |
| ATCGCCTGCAGAATGGCTTA+GGG | + | chr4_1:11611756-11611775 | Msa0535360:intron | 50.0% | |
| ATTCCCCTAAGCCATTCTGC+AGG | - | chr4_1:11611763-11611782 | None:intergenic | 50.0% | |
| AGAATGGCTTAGGGGAATGC+TGG | + | chr4_1:11611765-11611784 | Msa0535360:intron | 50.0% | |
| ! | TGAAGCATTTCATCGGGCCA+TGG | + | chr4_1:11612043-11612062 | Msa0535360:CDS | 50.0% |
| ! | ACTTGCTGGCAGTGAGTTTC+TGG | + | chr4_1:11612067-11612086 | Msa0535360:CDS | 50.0% |
| CGAACACTCTGCAAAGGAAG+AGG | - | chr4_1:11612211-11612230 | None:intergenic | 50.0% | |
| AACGGTTTGTCTAGCCGCAA+TGG | - | chr4_1:11612281-11612300 | None:intergenic | 50.0% | |
| TGTTACTGCCTGTGACTGGT+TGG | + | chr4_1:11612749-11612768 | Msa0535360:intron | 50.0% | |
| GGTCCCATGATGACCATTCT+GGG | - | chr4_1:11612988-11613007 | None:intergenic | 50.0% | |
| TGGTCCCATGATGACCATTC+TGG | - | chr4_1:11612989-11613008 | None:intergenic | 50.0% | |
| TTCCGGCTCTCGAATCTATC+GGG | - | chr4_1:11613907-11613926 | None:intergenic | 50.0% | |
| CTTCCGGCTCTCGAATCTAT+CGG | - | chr4_1:11613908-11613927 | None:intergenic | 50.0% | |
| ACTGTGAAGGTAGAGCCTTC+CGG | - | chr4_1:11613924-11613943 | None:intergenic | 50.0% | |
| CTTCACAGTGGCGAGGTTTA+CGG | + | chr4_1:11613935-11613954 | Msa0535360:CDS | 50.0% | |
| TTCACAGTGGCGAGGTTTAC+GGG | + | chr4_1:11613936-11613955 | Msa0535360:CDS | 50.0% | |
| AACCAAAGGGGGGTTGAGAG+GGG | - | chr4_1:11609338-11609357 | None:intergenic | 55.0% | |
| GAAACCAAAGGGGGGTTGAG+AGG | - | chr4_1:11609340-11609359 | None:intergenic | 55.0% | |
| !! | ACATGTGTCGGTGTCGTGTC+GGG | - | chr4_1:11610650-11610669 | None:intergenic | 55.0% |
| !! | CACATGTGTCGGTGTCGTGT+CGG | - | chr4_1:11610651-11610670 | None:intergenic | 55.0% |
| CAACGTGTCTGTGTCGTGTC+CGG | + | chr4_1:11610711-11610730 | Msa0535360:intron | 55.0% | |
| CGAGTCTTGCAGGAGAGTCT+AGG | - | chr4_1:11611570-11611589 | None:intergenic | 55.0% | |
| AGTCAGTGAGCGAGTCTTGC+AGG | - | chr4_1:11611580-11611599 | None:intergenic | 55.0% | |
| TCGCCTGCAGAATGGCTTAG+GGG | + | chr4_1:11611757-11611776 | Msa0535360:intron | 55.0% | |
| ATGGCTTAGGGGAATGCTGG+TGG | + | chr4_1:11611768-11611787 | Msa0535360:intron | 55.0% | |
| TGGCTTAGGGGAATGCTGGT+GGG | + | chr4_1:11611769-11611788 | Msa0535360:intron | 55.0% | |
| AAGCAAACAGTGGCGAGTGC+AGG | + | chr4_1:11613867-11613886 | Msa0535360:CDS | 55.0% | |
| CTCCCGATAGATTCGAGAGC+CGG | + | chr4_1:11613902-11613921 | Msa0535360:CDS | 55.0% | |
| CGATAGATTCGAGAGCCGGA+AGG | + | chr4_1:11613906-11613925 | Msa0535360:CDS | 55.0% | |
| GGAAGGCTCTACCTTCACAG+TGG | + | chr4_1:11613923-11613942 | Msa0535360:CDS | 55.0% | |
| CGTAAACCTCGCCACTGTGA+AGG | - | chr4_1:11613937-11613956 | None:intergenic | 55.0% | |
| AGGCAGATGGATGGGAACAG+AGG | + | chr4_1:11614167-11614186 | Msa0535360:three_prime_UTR | 55.0% | |
| ! | AAGCGCGTCGGTACCCACAA+TGG | + | chr4_1:11609206-11609225 | Msa0535360:CDS | 60.0% |
| CGTTCGAACTCGTGACCCTC+AGG | + | chr4_1:11609301-11609320 | Msa0535360:CDS | 60.0% | |
| TCGTGACCCTCAGGTTCGTG+TGG | + | chr4_1:11609310-11609329 | Msa0535360:intron | 60.0% | |
| CGTGACCCTCAGGTTCGTGT+GGG | + | chr4_1:11609311-11609330 | Msa0535360:intron | 60.0% | |
| GGCTTAGGGGAATGCTGGTG+GGG | + | chr4_1:11611770-11611789 | Msa0535360:intron | 60.0% | |
| CTCACTGCCAGCAAGTGCCA+TGG | - | chr4_1:11612063-11612082 | None:intergenic | 60.0% | |
| GCTCTACCTTCACAGTGGCG+AGG | + | chr4_1:11613928-11613947 | Msa0535360:CDS | 60.0% | |
| CACGCGTCTCTCAAGCGCGT+CGG | + | chr4_1:11609194-11609213 | Msa0535360:CDS | 65.0% | |
| GGGGTCCCACACGAACCTGA+GGG | - | chr4_1:11609319-11609338 | None:intergenic | 65.0% | |
| AGGGGTCCCACACGAACCTG+AGG | - | chr4_1:11609320-11609339 | None:intergenic | 65.0% | |
| GACCCCTCTCAACCCCCCTT+TGG | + | chr4_1:11609333-11609352 | Msa0535360:intron | 65.0% | |
| CATCGGGCCATGGCACTTGC+TGG | + | chr4_1:11612053-11612072 | Msa0535360:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 11608972 | 11614483 | 11608972 | ID=Msa0535360;Name=Msa0535360 |
| chr4_1 | mRNA | 11608972 | 11614483 | 11608972 | ID=Msa0535360-mRNA-1;Parent=Msa0535360;Name=Msa0535360-mRNA-1;_AED=0.06;_eAED=0.06;_QI=57|1|1|1|0.85|0.75|8|349|382 |
| chr4_1 | exon | 11608972 | 11609322 | 11608972 | ID=Msa0535360-mRNA-1:exon:3714;Parent=Msa0535360-mRNA-1 |
| chr4_1 | exon | 11610267 | 11610413 | 11610267 | ID=Msa0535360-mRNA-1:exon:3715;Parent=Msa0535360-mRNA-1 |
| chr4_1 | exon | 11611034 | 11611132 | 11611034 | ID=Msa0535360-mRNA-1:exon:3716;Parent=Msa0535360-mRNA-1 |
| chr4_1 | exon | 11611900 | 11612091 | 11611900 | ID=Msa0535360-mRNA-1:exon:3717;Parent=Msa0535360-mRNA-1 |
| chr4_1 | exon | 11612223 | 11612342 | 11612223 | ID=Msa0535360-mRNA-1:exon:3718;Parent=Msa0535360-mRNA-1 |
| chr4_1 | exon | 11613157 | 11613228 | 11613157 | ID=Msa0535360-mRNA-1:exon:3719;Parent=Msa0535360-mRNA-1 |
| chr4_1 | exon | 11613859 | 11614324 | 11613859 | ID=Msa0535360-mRNA-1:exon:3720;Parent=Msa0535360-mRNA-1 |
| chr4_1 | exon | 11614376 | 11614483 | 11614376 | ID=Msa0535360-mRNA-1:exon:3721;Parent=Msa0535360-mRNA-1 |
| chr4_1 | five_prime_UTR | 11608972 | 11609028 | 11608972 | ID=Msa0535360-mRNA-1:five_prime_utr;Parent=Msa0535360-mRNA-1 |
| chr4_1 | CDS | 11609029 | 11609322 | 11609029 | ID=Msa0535360-mRNA-1:cds;Parent=Msa0535360-mRNA-1 |
| chr4_1 | CDS | 11610267 | 11610413 | 11610267 | ID=Msa0535360-mRNA-1:cds;Parent=Msa0535360-mRNA-1 |
| chr4_1 | CDS | 11611034 | 11611132 | 11611034 | ID=Msa0535360-mRNA-1:cds;Parent=Msa0535360-mRNA-1 |
| chr4_1 | CDS | 11611900 | 11612091 | 11611900 | ID=Msa0535360-mRNA-1:cds;Parent=Msa0535360-mRNA-1 |
| chr4_1 | CDS | 11612223 | 11612342 | 11612223 | ID=Msa0535360-mRNA-1:cds;Parent=Msa0535360-mRNA-1 |
| chr4_1 | CDS | 11613157 | 11613228 | 11613157 | ID=Msa0535360-mRNA-1:cds;Parent=Msa0535360-mRNA-1 |
| chr4_1 | CDS | 11613859 | 11614083 | 11613859 | ID=Msa0535360-mRNA-1:cds;Parent=Msa0535360-mRNA-1 |
| chr4_1 | three_prime_UTR | 11614084 | 11614324 | 11614084 | ID=Msa0535360-mRNA-1:three_prime_utr;Parent=Msa0535360-mRNA-1 |
| chr4_1 | three_prime_UTR | 11614376 | 11614483 | 11614376 | ID=Msa0535360-mRNA-1:three_prime_utr;Parent=Msa0535360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
