AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0677290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677290 MtrunA17_Chr4g0031981 99.398 332 2 0 1 332 473 804 0.0 684
Msa0677290 MtrunA17_Chr2g0328601 86.747 332 44 0 1 332 460 791 0.0 617
Msa0677290 MtrunA17_Chr5g0400161 81.690 71 13 0 197 267 2 72 4.11e-37 128
Msa0677290 MtrunA17_Chr1g0184291 32.487 197 110 7 127 316 165 345 6.50e-15 74.7
Msa0677290 MtrunA17_Chr2g0322151 26.820 261 151 7 78 316 102 344 1.03e-14 74.3
Msa0677290 MtrunA17_Chr2g0328911 33.333 156 89 4 166 316 588 733 7.46e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0677290 AT3G46740.1 84.639 332 51 0 1 332 487 818 0.0 608
Msa0677290 AT4G09080.1 69.369 333 99 3 2 332 65 396 1.43e-169 477
Msa0677290 AT4G09080.2 69.670 333 98 3 2 332 76 407 2.37e-169 477
Msa0677290 AT4G09080.3 70.154 325 94 3 10 332 2 325 1.22e-167 469
Msa0677290 AT1G35860.1 48.387 310 64 5 1 307 183 399 4.41e-86 265
Msa0677290 AT3G44160.1 33.480 227 119 9 78 288 102 312 1.31e-17 83.2
Msa0677290 AT5G19620.1 27.019 322 183 13 21 329 445 727 4.12e-14 73.6

Find 126 sgRNAs with CRISPR-Local

Find 270 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTACCTCGAGGATGTTTC+TGG 0.196346 4_4:+30809453 None:intergenic
CGTCAGAGTAAATTCACTTA+TGG 0.227562 4_4:-30811113 Msa0677290:CDS
CTATAGGTTACTCTCAAAAT+TGG 0.240843 4_4:-30808954 Msa0677290:three_prime_UTR
TAAAATTACCTCAGTGATAT+TGG 0.265879 4_4:+30811235 None:intergenic
TTCCATCCGTTCTCATGAAT+TGG 0.276870 4_4:+30808850 None:intergenic
GGATGATCTTGCATTTAAAA+TGG 0.280908 4_4:-30811414 Msa0677290:CDS
GGTGGTGGCACAAGTATATT+TGG 0.281253 4_4:-30808639 Msa0677290:three_prime_UTR
AGTGAACTCCCTGCTGCTAC+TGG 0.285405 4_4:-30808987 Msa0677290:three_prime_UTR
TGTTTGAATCTTGTAGAAAT+TGG 0.290682 4_4:-30809014 Msa0677290:three_prime_UTR
GGAGTATGCACATCCGTATT+TGG 0.292124 4_4:-30811393 Msa0677290:CDS
GAAACTGAGTCAAAGTTAAT+TGG 0.330853 4_4:+30809641 None:intergenic
ATGGGTCAGGGGTCCTCTTA+TGG 0.335391 4_4:-30809200 Msa0677290:CDS
CCAGTATTCACTGGTGGGCC+GGG 0.337871 4_4:-30811305 Msa0677290:CDS
CTCAAAATCTTTCTCCAAAT+CGG 0.339518 4_4:+30809102 None:intergenic
TCCAGTATTCACTGGTGGGC+CGG 0.351628 4_4:-30811306 Msa0677290:CDS
CCCGGCCCACCAGTGAATAC+TGG 0.359227 4_4:+30811305 None:intergenic
GCAGAACATGGCACCGATCT+AGG 0.359815 4_4:-30809269 Msa0677290:CDS
TACACGTGTGTACCTTTAAT+AGG 0.361255 4_4:+30809299 None:intergenic
CCCTTTGTGATGAGGATTGT+AGG 0.374978 4_4:-30808792 Msa0677290:three_prime_UTR
TGGAAGCAGGAACATGTTCC+AGG 0.393764 4_4:-30810895 Msa0677290:intron
GGATTGAATAGATCTCTTAC+TGG 0.396182 4_4:-30811591 Msa0677290:CDS
CCAGTACCACTGAGGGTTGT+TGG 0.404945 4_4:+30810990 None:intergenic
TGGATGAAGTGCCCTCCATA+TGG 0.410464 4_4:-30811280 Msa0677290:CDS
CTCCCTGCTGCTACTGGGGT+TGG 0.411585 4_4:-30808981 Msa0677290:three_prime_UTR
GTTGTAACCCCTTACAGAAT+AGG 0.411697 4_4:+30809495 None:intergenic
GTGAACTCCCTGCTGCTACT+GGG 0.413398 4_4:-30808986 Msa0677290:three_prime_UTR
CAGTATTCACTGGTGGGCCG+GGG 0.414933 4_4:-30811304 Msa0677290:CDS
TTGTAACCCCTTACAGAATA+GGG 0.418439 4_4:+30809496 None:intergenic
AATTGGTGACGGTTAAAGAA+TGG 0.420841 4_4:+30809658 None:intergenic
CTTCCTCCACAGACTTCAAC+TGG 0.424159 4_4:+30809617 None:intergenic
GAGGTACGTATACCTATTAA+AGG 0.424670 4_4:-30809311 Msa0677290:CDS
GGTTACAACATGGGTGAGAT+TGG 0.425561 4_4:-30809481 Msa0677290:CDS
TGAATACTGGACTCAGCTTT+CGG 0.425621 4_4:+30811318 None:intergenic
CTTGTCCTCCATGGTCACTA+TGG 0.425624 4_4:-30809568 Msa0677290:CDS
ACCATTGGAACAGATATGAT+TGG 0.428498 4_4:+30811055 None:intergenic
CAGGGGTCCTCTTATGGTGC+TGG 0.428552 4_4:-30809194 Msa0677290:CDS
ATTGGTGACGGTTAAAGAAT+GGG 0.436136 4_4:+30809659 None:intergenic
GAAATCCGACAGAAGTCTAT+AGG 0.441636 4_4:-30809226 Msa0677290:CDS
CTTCATACCAGCACCATAAG+AGG 0.442191 4_4:+30809187 None:intergenic
AGTCTATAGGAGAATGGGTC+AGG 0.444715 4_4:-30809213 Msa0677290:CDS
ACCAGCACGGTCAACCCATA+TGG 0.451429 4_4:+30811265 None:intergenic
CATGAGTCGTAGTGTATGTT+TGG 0.453624 4_4:-30809074 Msa0677290:three_prime_UTR
AGCAGCTTACACGGAGAGTT+CGG 0.456701 4_4:+30811348 None:intergenic
CCAACAACCCTCAGTGGTAC+TGG 0.463318 4_4:-30810990 Msa0677290:CDS
TATGGTGCTGGTATGAAGCT+TGG 0.464083 4_4:-30809182 Msa0677290:CDS
AAACCAACCCCAGTAGCAGC+AGG 0.467106 4_4:+30808978 None:intergenic
TCTGCACTAATTCCTCCATT+AGG 0.471078 4_4:+30811020 None:intergenic
GGTCAAAGAGTATTGCCTAA+TGG 0.474904 4_4:-30811035 Msa0677290:CDS
AGGCAATACTCTTTGACCAT+TGG 0.475159 4_4:+30811040 None:intergenic
GTTGATCATAACTCAGGAAC+AGG 0.476580 4_4:-30809137 Msa0677290:CDS
TTTGTGAACGGAGCTATAGT+TGG 0.480304 4_4:-30810915 Msa0677290:CDS
CTACAAGATTCAAACACCTA+TGG 0.484282 4_4:+30809021 None:intergenic
ATTCACTTATGGATTAGTAA+TGG 0.488117 4_4:-30811102 Msa0677290:CDS
GACAGAAGTCTATAGGAGAA+TGG 0.488499 4_4:-30809219 Msa0677290:CDS
GTTACTCTCAAAATTGGTGT+AGG 0.488813 4_4:-30808948 Msa0677290:three_prime_UTR
GTTTCTCCAGTTGAAGTCTG+TGG 0.496953 4_4:-30809623 Msa0677290:CDS
ACAGAAGTCTATAGGAGAAT+GGG 0.503850 4_4:-30809218 Msa0677290:CDS
CTTCCTACAGCTGGCAGCTG+AGG 0.508063 4_4:-30809330 Msa0677290:intron
TTCTGTAAGGGGTTACAACA+TGG 0.513783 4_4:-30809491 Msa0677290:CDS
TTACTCTCAAAATTGGTGTA+GGG 0.517563 4_4:-30808947 Msa0677290:three_prime_UTR
TCATTTACACCATCCAAATA+CGG 0.518980 4_4:+30811380 None:intergenic
GTCCAATTCATGAGAACGGA+TGG 0.520989 4_4:-30808852 Msa0677290:three_prime_UTR
TCAAAACTGCAGGTAGATCA+AGG 0.521033 4_4:-30809703 Msa0677290:intron
AGTATTCACTGGTGGGCCGG+GGG 0.524172 4_4:-30811303 Msa0677290:CDS
CTGCAGGTAGATCAAGGCCT+TGG 0.525854 4_4:-30809697 Msa0677290:intron
TCCATATGGGTTGACCGTGC+TGG 0.529325 4_4:-30811266 Msa0677290:CDS
ACCAATCATATCTGTTCCAA+TGG 0.531948 4_4:-30811056 Msa0677290:CDS
AGAGTAAAAGCATCATAACT+TGG 0.532470 4_4:+30809526 None:intergenic
TGGTACTGGTATCGATAAGA+TGG 0.535826 4_4:-30810976 Msa0677290:CDS
TGAACTCCCTGCTGCTACTG+GGG 0.537050 4_4:-30808985 Msa0677290:three_prime_UTR
GGCTGTTGAAGCAGCTTACA+CGG 0.541865 4_4:+30811339 None:intergenic
AATGGAGGAATTAGTGCAGA+TGG 0.543155 4_4:-30811017 Msa0677290:CDS
CCTACAATCCTCATCACAAA+GGG 0.543362 4_4:+30808792 None:intergenic
CCACCAGTGCTTGTCCTCCA+TGG 0.557742 4_4:-30809577 Msa0677290:CDS
GGAAGAAATATTTCAGCCAT+AGG 0.557908 4_4:-30809037 Msa0677290:three_prime_UTR
AGGACAAGCACTGGTGGTGG+TGG 0.558995 4_4:+30809583 None:intergenic
ACACGGAGAGTTCGGTTGCG+TGG 0.562344 4_4:+30811356 None:intergenic
GGATGAAGTGCCCTCCATAT+GGG 0.563784 4_4:-30811279 Msa0677290:CDS
GTGTATGCCTTTGCAGAACA+TGG 0.566174 4_4:-30809281 Msa0677290:CDS
TAGCAACTTCTTGAATCCTC+AGG 0.567074 4_4:-30811556 Msa0677290:intron
GGTCACTATGGTGGTTGTGT+AGG 0.572314 4_4:-30809556 Msa0677290:CDS
AAGCTGAGTCCAGTATTCAC+TGG 0.572634 4_4:-30811314 Msa0677290:CDS
GAGGGCACTTCATCCACCCC+CGG 0.574911 4_4:+30811287 None:intergenic
AAGTCTGTGGAGGAAGGTGC+TGG 0.575143 4_4:-30809610 Msa0677290:CDS
GAGTCAAAGTTAATTGGTGA+CGG 0.579143 4_4:+30809647 None:intergenic
CAGTTGAAGTCTGTGGAGGA+AGG 0.582370 4_4:-30809616 Msa0677290:CDS
GTAGATCAAGGCCTTGGTGT+TGG 0.582725 4_4:-30809691 Msa0677290:CDS
AGTTATCAATAGTAGACCGC+AGG 0.583946 4_4:+30808894 None:intergenic
GTCTATAGGAGAATGGGTCA+GGG 0.584875 4_4:-30809212 Msa0677290:CDS
GGAAGTTCAAAAGATGTCAA+AGG 0.585343 4_4:-30809248 Msa0677290:CDS
ATTCTCCTATAGACTTCTGT+CGG 0.588523 4_4:+30809221 None:intergenic
ACGGAGCTATAGTTGGAAGC+AGG 0.591154 4_4:-30810908 Msa0677290:CDS
TATGCACATCCGTATTTGGA+TGG 0.591352 4_4:-30811389 Msa0677290:CDS
TAATGTCCAATTCATGAGAA+CGG 0.592439 4_4:-30808856 Msa0677290:three_prime_UTR
CACAACCACCATAGTGACCA+TGG 0.599148 4_4:+30809560 None:intergenic
ATCGGTGCCATGTTCTGCAA+AGG 0.600282 4_4:+30809274 None:intergenic
CTGAGTCCAGTATTCACTGG+TGG 0.604435 4_4:-30811311 Msa0677290:CDS
AGCACGGTCAACCCATATGG+AGG 0.608832 4_4:+30811268 None:intergenic
TATGCGGTTGATCATAACTC+AGG 0.608919 4_4:-30809143 Msa0677290:CDS
TGACCATGGAGGACAAGCAC+TGG 0.609873 4_4:+30809574 None:intergenic
TTTACAAGCTAATATTACAA+GGG 0.614814 4_4:-30810949 Msa0677290:CDS
GTCCTCCATGGTCACTATGG+TGG 0.615702 4_4:-30809565 Msa0677290:CDS
TGAGTCCAGTATTCACTGGT+GGG 0.621283 4_4:-30811310 Msa0677290:CDS
TCCTACAATCCTCATCACAA+AGG 0.621357 4_4:+30808791 None:intergenic
CAAAGAGTATTGCCTAATGG+AGG 0.624544 4_4:-30811032 Msa0677290:CDS
TCTGTAAGGGGTTACAACAT+GGG 0.625335 4_4:-30809490 Msa0677290:CDS
AACCAACCCCAGTAGCAGCA+GGG 0.625840 4_4:+30808979 None:intergenic
GTACCACTGAGGGTTGTTGG+AGG 0.632265 4_4:+30810993 None:intergenic
TCTCCAGTTGAAGTCTGTGG+AGG 0.634494 4_4:-30809620 Msa0677290:CDS
TGGAGGACAAGCACTGGTGG+TGG 0.638082 4_4:+30809580 None:intergenic
TGGCTGAAATATTTCTTCCG+CGG 0.639329 4_4:+30809041 None:intergenic
ATCGATACCAGTACCACTGA+GGG 0.640712 4_4:+30810983 None:intergenic
TTTGAACATAGGAATCTGCA+AGG 0.642514 4_4:-30811612 None:intergenic
TCTATAGGAGAATGGGTCAG+GGG 0.660220 4_4:-30809211 Msa0677290:CDS
GGAAATTGCTGCCAACACCA+AGG 0.665668 4_4:+30809680 None:intergenic
GAAGCTTGGTTTAGTGAGAG+CGG 0.666822 4_4:-30809168 Msa0677290:CDS
GCACGGTCAACCCATATGGA+GGG 0.670151 4_4:+30811269 None:intergenic
CCATGGAGGACAAGCACTGG+TGG 0.671793 4_4:+30809577 None:intergenic
TTTAGTGAGAGCGGAATATG+CGG 0.680967 4_4:-30809159 Msa0677290:CDS
GATAACACAAGGTTTGTGAA+CGG 0.685190 4_4:-30810927 Msa0677290:CDS
GGACCTCCAACAACCCTCAG+TGG 0.685641 4_4:-30810996 Msa0677290:CDS
ATATTACAAGGGATAACACA+AGG 0.704360 4_4:-30810938 Msa0677290:CDS
TATCGATACCAGTACCACTG+AGG 0.732661 4_4:+30810982 None:intergenic
AGCAGCCAGAAACATCCTCG+AGG 0.763048 4_4:-30809458 Msa0677290:intron
TGTAAAAGCCAATATCACTG+AGG 0.767187 4_4:-30811243 Msa0677290:intron
AACCACCATAGTGACCATGG+AGG 0.809946 4_4:+30809563 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAGAACAAGTATAATAAAAT+GGG + chr4_4:30808693-30808712 None:intergenic 15.0%
!! AAAGAACAAGTATAATAAAA+TGG + chr4_4:30808694-30808713 None:intergenic 15.0%
!!! AGAAACAAAATTAACATTTT+GGG + chr4_4:30809360-30809379 None:intergenic 15.0%
!!! TAGAAACAAAATTAACATTT+TGG + chr4_4:30809361-30809380 None:intergenic 15.0%
!! ATTTAAATTCTAACCAAAAA+TGG + chr4_4:30809421-30809440 None:intergenic 15.0%
!!! AAAGGATTTTGAAAATATTT+GGG + chr4_4:30809527-30809546 None:intergenic 15.0%
!!! TTTTACAAGCTAATATTACA+AGG - chr4_4:30809243-30809262 Msa0677290:CDS 20.0%
!! TTTACAAGCTAATATTACAA+GGG - chr4_4:30809244-30809263 Msa0677290:CDS 20.0%
!! ATATCAACAGCAATAATTAT+AGG + chr4_4:30809334-30809353 None:intergenic 20.0%
!!! TATAATTATTGCTGTTGATA+TGG - chr4_4:30809333-30809352 Msa0677290:intron 20.0%
!! AATTTAAATCTAGACTAAAG+TGG - chr4_4:30809432-30809451 Msa0677290:intron 20.0%
!! ATTTAAATCTAGACTAAAGT+GGG - chr4_4:30809433-30809452 Msa0677290:intron 20.0%
!!! GAAAGGATTTTGAAAATATT+TGG + chr4_4:30809528-30809547 None:intergenic 20.0%
!! ATAAAATAGATACTATCGAA+AGG + chr4_4:30809545-30809564 None:intergenic 20.0%
!! AAATTAGAAGTCTTAGAATA+TGG + chr4_4:30810076-30810095 None:intergenic 20.0%
!!! ATGATTGTGATTTTTTATAG+TGG - chr4_4:30810191-30810210 Msa0677290:intron 20.0%
!!! TGATTGTGATTTTTTATAGT+GGG - chr4_4:30810192-30810211 Msa0677290:intron 20.0%
!!! ACTATTTTACTGTAACTTTA+AGG - chr4_4:30810386-30810405 Msa0677290:intron 20.0%
!! CAAAAAAAAAAAAAATCGAG+TGG + chr4_4:30811524-30811543 None:intergenic 20.0%
!!! CACTCGATTTTTTTTTTTTT+TGG - chr4_4:30811522-30811541 Msa0677290:intron 20.0%
!!! TTTTTTTTTTGGTCTTGATT+TGG - chr4_4:30811533-30811552 Msa0677290:intron 20.0%
! TAAAATTACCTCAGTGATAT+TGG + chr4_4:30808961-30808980 None:intergenic 25.0%
!!! ATTCACTTATGGATTAGTAA+TGG - chr4_4:30809091-30809110 Msa0677290:exon 25.0%
! TTTAAATCTAGACTAAAGTG+GGG - chr4_4:30809434-30809453 Msa0677290:intron 25.0%
!!! TTGCAGATTTTTTTTTCACA+TGG - chr4_4:30809585-30809604 Msa0677290:CDS 25.0%
!!! TCATTCTTCTAATTTTTGGT+GGG - chr4_4:30810140-30810159 Msa0677290:intron 25.0%
! TGCTAGATAATGTATAGAAT+GGG + chr4_4:30810821-30810840 None:intergenic 25.0%
! TTGCTAGATAATGTATAGAA+TGG + chr4_4:30810822-30810841 None:intergenic 25.0%
! TGTTTGAATCTTGTAGAAAT+TGG - chr4_4:30811179-30811198 Msa0677290:intron 25.0%
!! TAAGATTTTAGATTATCCTG+CGG - chr4_4:30811283-30811302 Msa0677290:CDS 25.0%
!!! TCTACTATTGATAACTTTTG+CGG - chr4_4:30811306-30811325 Msa0677290:CDS 25.0%
!! CAGAATTTTTCATCAACTAA+CGG + chr4_4:30811447-30811466 None:intergenic 25.0%
!!! TTTGACTCATTCTATTTTTC+TGG - chr4_4:30811477-30811496 Msa0677290:intron 25.0%
AAAATGGGAAAAAGACTCAA+TGG + chr4_4:30808678-30808697 None:intergenic 30.0%
GGATGATCTTGCATTTAAAA+TGG - chr4_4:30808779-30808798 Msa0677290:three_prime_UTR 30.0%
TCATTTACACCATCCAAATA+CGG + chr4_4:30808816-30808835 None:intergenic 30.0%
! TATCACTGAGGTAATTTTAC+TGG - chr4_4:30808962-30808981 Msa0677290:three_prime_UTR 30.0%
! ACATTAGTTTCTTCTTGACT+TGG - chr4_4:30808992-30809011 Msa0677290:three_prime_UTR 30.0%
ATATTACAAGGGATAACACA+AGG - chr4_4:30809255-30809274 Msa0677290:CDS 30.0%
ATTCTAACCAAAAATGGAAG+TGG + chr4_4:30809415-30809434 None:intergenic 30.0%
TTAAATCTAGACTAAAGTGG+GGG - chr4_4:30809435-30809454 Msa0677290:intron 30.0%
!!! GGTTTAAGCCTCATTTTTTA+TGG - chr4_4:30809486-30809505 Msa0677290:CDS 30.0%
GGATATCTCCATAAAAAATG+AGG + chr4_4:30809497-30809516 None:intergenic 30.0%
!! GGATTTTGAAAATATTTGGG+AGG + chr4_4:30809524-30809543 None:intergenic 30.0%
AATGTCTTGTCATAAGTGTA+AGG - chr4_4:30809641-30809660 Msa0677290:CDS 30.0%
ATGTCTTGTCATAAGTGTAA+GGG - chr4_4:30809642-30809661 Msa0677290:CDS 30.0%
!! TTGTTTTCCTACATTGACTA+AGG - chr4_4:30809670-30809689 Msa0677290:CDS 30.0%
!! TGTTTTCCTACATTGACTAA+GGG - chr4_4:30809671-30809690 Msa0677290:CDS 30.0%
GCTTATTAGAGTTTATCTAC+TGG - chr4_4:30809707-30809726 Msa0677290:intron 30.0%
! AATGTTTTCACAAGCTATCT+TGG + chr4_4:30809823-30809842 None:intergenic 30.0%
AAGTCTTAGAATATGGACTT+GGG + chr4_4:30810069-30810088 None:intergenic 30.0%
CATCAAACAGGACTAAATTT+AGG + chr4_4:30810114-30810133 None:intergenic 30.0%
! TGCCTCATTCTTCTAATTTT+TGG - chr4_4:30810136-30810155 Msa0677290:intron 30.0%
CACCAAAAATTAGAAGAATG+AGG + chr4_4:30810141-30810160 None:intergenic 30.0%
!! CTCATTCTTCTAATTTTTGG+TGG - chr4_4:30810139-30810158 Msa0677290:intron 30.0%
ATTCTAGTCCAATGTATCTT+AGG + chr4_4:30810166-30810185 None:intergenic 30.0%
! GTTGTTGTTAACAATTTGGA+GGG + chr4_4:30810270-30810289 None:intergenic 30.0%
! TGTTGTTGTTAACAATTTGG+AGG + chr4_4:30810271-30810290 None:intergenic 30.0%
! GGTTGTTGTTGTTAACAATT+TGG + chr4_4:30810274-30810293 None:intergenic 30.0%
! TTACTGTAACTTTAAGGACA+CGG - chr4_4:30810392-30810411 Msa0677290:intron 30.0%
GAAACTGAGTCAAAGTTAAT+TGG + chr4_4:30810555-30810574 None:intergenic 30.0%
!! AGAGTAAAAGCATCATAACT+TGG + chr4_4:30810670-30810689 None:intergenic 30.0%
! AGTTATGATGCTTTTACTCT+TGG - chr4_4:30810670-30810689 Msa0677290:intron 30.0%
! GTTATGATGCTTTTACTCTT+GGG - chr4_4:30810671-30810690 Msa0677290:intron 30.0%
! TTATGATGCTTTTACTCTTG+GGG - chr4_4:30810672-30810691 Msa0677290:intron 30.0%
GTACATCTTATGATTGTCAA+TGG - chr4_4:30810771-30810790 Msa0677290:intron 30.0%
TAGATAATGTATAGAATGGG+AGG + chr4_4:30810818-30810837 None:intergenic 30.0%
! ATCTTTTGAACTTCCTAGAT+CGG + chr4_4:30810940-30810959 None:intergenic 30.0%
CTCAAAATCTTTCTCCAAAT+CGG + chr4_4:30811094-30811113 None:intergenic 30.0%
CTATAGGTTACTCTCAAAAT+TGG - chr4_4:30811239-30811258 Msa0677290:intron 30.0%
TTACTCTCAAAATTGGTGTA+GGG - chr4_4:30811246-30811265 Msa0677290:CDS 30.0%
TAATGTCCAATTCATGAGAA+CGG - chr4_4:30811337-30811356 Msa0677290:CDS 30.0%
!!! TTTTTTTGGTCTTGATTTGG+TGG - chr4_4:30811536-30811555 Msa0677290:intron 30.0%
GGATTGAATAGATCTCTTAC+TGG - chr4_4:30808602-30808621 Msa0677290:three_prime_UTR 35.0%
! CTTTAGTTTCTCATCTATGC+AGG - chr4_4:30808710-30808729 Msa0677290:three_prime_UTR 35.0%
TGTAAAAGCCAATATCACTG+AGG - chr4_4:30808950-30808969 Msa0677290:three_prime_UTR 35.0%
!! TTCTTCTTGACTTGGCTATT+TGG - chr4_4:30809000-30809019 Msa0677290:three_prime_UTR 35.0%
!! TCTTCTTGACTTGGCTATTT+GGG - chr4_4:30809001-30809020 Msa0677290:three_prime_UTR 35.0%
CGTCAGAGTAAATTCACTTA+TGG - chr4_4:30809080-30809099 Msa0677290:three_prime_UTR 35.0%
ACCAATCATATCTGTTCCAA+TGG - chr4_4:30809137-30809156 Msa0677290:CDS 35.0%
ACCATTGGAACAGATATGAT+TGG + chr4_4:30809141-30809160 None:intergenic 35.0%
GATAACACAAGGTTTGTGAA+CGG - chr4_4:30809266-30809285 Msa0677290:CDS 35.0%
ATTATAGGATGATAGTCACC+TGG + chr4_4:30809319-30809338 None:intergenic 35.0%
TCTAATAAGAGAACCACAGT+TGG - chr4_4:30809377-30809396 Msa0677290:intron 35.0%
TGAAAATATTTGGGAGGTCA+TGG + chr4_4:30809518-30809537 None:intergenic 35.0%
! TGACAAGACATTTGAAACGT+CGG + chr4_4:30809633-30809652 None:intergenic 35.0%
TGTCTTGTCATAAGTGTAAG+GGG - chr4_4:30809643-30809662 Msa0677290:CDS 35.0%
TCTAATAAGCCAATCCAAAC+AGG + chr4_4:30809697-30809716 None:intergenic 35.0%
!! TAAGCTATTTCTGTGGCAAA+TGG + chr4_4:30809880-30809899 None:intergenic 35.0%
!! GCTTACATAAGCTATTTCTG+TGG + chr4_4:30809887-30809906 None:intergenic 35.0%
TACCTAGTGCCGTATATTTA+GGG + chr4_4:30809979-30809998 None:intergenic 35.0%
AGTCTTAGAATATGGACTTG+GGG + chr4_4:30810068-30810087 None:intergenic 35.0%
GAAGTCTTAGAATATGGACT+TGG + chr4_4:30810070-30810089 None:intergenic 35.0%
AAACTCATCCTCATCTACTT+TGG + chr4_4:30810227-30810246 None:intergenic 35.0%
TTGTTAACAATTTGGAGGGA+AGG + chr4_4:30810266-30810285 None:intergenic 35.0%
TTAGAGTGACATGAATGTGA+GGG + chr4_4:30810360-30810379 None:intergenic 35.0%
ATTAGAGTGACATGAATGTG+AGG + chr4_4:30810361-30810380 None:intergenic 35.0%
! TACTGTAACTTTAAGGACAC+GGG - chr4_4:30810393-30810412 Msa0677290:intron 35.0%
!! CAGTTTTGATAGAGAGATAG+TGG + chr4_4:30810479-30810498 None:intergenic 35.0%
TATCTCTCTATCAAAACTGC+AGG - chr4_4:30810480-30810499 Msa0677290:intron 35.0%
!! ATTGGTGACGGTTAAAGAAT+GGG + chr4_4:30810537-30810556 None:intergenic 35.0%
!! AATTGGTGACGGTTAAAGAA+TGG + chr4_4:30810538-30810557 None:intergenic 35.0%
GAGTCAAAGTTAATTGGTGA+CGG + chr4_4:30810549-30810568 None:intergenic 35.0%
! TATGATGCTTTTACTCTTGG+GGG - chr4_4:30810673-30810692 Msa0677290:intron 35.0%
TTGTAACCCCTTACAGAATA+GGG + chr4_4:30810700-30810719 None:intergenic 35.0%
ACACAATCATTATTACCTCG+AGG + chr4_4:30810753-30810772 None:intergenic 35.0%
GAGGTACGTATACCTATTAA+AGG - chr4_4:30810882-30810901 Msa0677290:intron 35.0%
TACACGTGTGTACCTTTAAT+AGG + chr4_4:30810897-30810916 None:intergenic 35.0%
GGAAGTTCAAAAGATGTCAA+AGG - chr4_4:30810945-30810964 Msa0677290:CDS 35.0%
ATTCTCCTATAGACTTCTGT+CGG + chr4_4:30810975-30810994 None:intergenic 35.0%
ACAGAAGTCTATAGGAGAAT+GGG - chr4_4:30810975-30810994 Msa0677290:CDS 35.0%
! GGTGCAATATTTTTCCGATT+TGG - chr4_4:30811077-30811096 Msa0677290:CDS 35.0%
!! CGATTTGGAGAAAGATTTTG+AGG - chr4_4:30811092-30811111 Msa0677290:CDS 35.0%
GGAAGAAATATTTCAGCCAT+AGG - chr4_4:30811156-30811175 Msa0677290:intron 35.0%
CTACAAGATTCAAACACCTA+TGG + chr4_4:30811175-30811194 None:intergenic 35.0%
GTTACTCTCAAAATTGGTGT+AGG - chr4_4:30811245-30811264 Msa0677290:CDS 35.0%
!! TTGTTTTTCCCTTTGTGATG+AGG - chr4_4:30811393-30811412 Msa0677290:CDS 35.0%
TAGCAACTTCTTGAATCCTC+AGG - chr4_4:30808637-30808656 Msa0677290:three_prime_UTR 40.0%
TTTCTCATCTATGCAGGCAT+AGG - chr4_4:30808716-30808735 Msa0677290:three_prime_UTR 40.0%
!! AGGCATAGGCATTGATGATT+TGG - chr4_4:30808730-30808749 Msa0677290:three_prime_UTR 40.0%
TGTGCTTTATGTACTGCTGT+AGG - chr4_4:30808758-30808777 Msa0677290:three_prime_UTR 40.0%
TATGCACATCCGTATTTGGA+TGG - chr4_4:30808804-30808823 Msa0677290:three_prime_UTR 40.0%
TGAATACTGGACTCAGCTTT+CGG + chr4_4:30808878-30808897 None:intergenic 40.0%
!!! TATTGGCTTTTACACCAGCA+CGG + chr4_4:30808944-30808963 None:intergenic 40.0%
CTGACGAGAAAAATTCTGCT+CGG + chr4_4:30809066-30809085 None:intergenic 40.0%
AGGCAATACTCTTTGACCAT+TGG + chr4_4:30809156-30809175 None:intergenic 40.0%
!! GGTCAAAGAGTATTGCCTAA+TGG - chr4_4:30809158-30809177 Msa0677290:CDS 40.0%
!! CAAAGAGTATTGCCTAATGG+AGG - chr4_4:30809161-30809180 Msa0677290:CDS 40.0%
TCTGCACTAATTCCTCCATT+AGG + chr4_4:30809176-30809195 None:intergenic 40.0%
AATGGAGGAATTAGTGCAGA+TGG - chr4_4:30809176-30809195 Msa0677290:CDS 40.0%
!! TGGTACTGGTATCGATAAGA+TGG - chr4_4:30809217-30809236 Msa0677290:CDS 40.0%
TTTGTGAACGGAGCTATAGT+TGG - chr4_4:30809278-30809297 Msa0677290:CDS 40.0%
AAGTGGGGGAAGAAAACAAA+AGG - chr4_4:30809449-30809468 Msa0677290:intron 40.0%
AACAAAAGGATGCATCAAGC+AGG - chr4_4:30809463-30809482 Msa0677290:CDS 40.0%
ACAAAAGGATGCATCAAGCA+GGG - chr4_4:30809464-30809483 Msa0677290:CDS 40.0%
GTCTTGTCATAAGTGTAAGG+GGG - chr4_4:30809644-30809663 Msa0677290:CDS 40.0%
TCTTGTCATAAGTGTAAGGG+GGG - chr4_4:30809645-30809664 Msa0677290:CDS 40.0%
AGCGCTATCATGATAAATGC+TGG - chr4_4:30809916-30809935 Msa0677290:intron 40.0%
!! AGTAAGCTGTTTCTGCAAAC+AGG - chr4_4:30809953-30809972 Msa0677290:intron 40.0%
GCAAACAGGCCCTAAATATA+CGG - chr4_4:30809967-30809986 Msa0677290:intron 40.0%
CTACCTAGTGCCGTATATTT+AGG + chr4_4:30809980-30809999 None:intergenic 40.0%
CTAAATATACGGCACTAGGT+AGG - chr4_4:30809978-30809997 Msa0677290:intron 40.0%
! GAATGAGGCATTCATCAAAC+AGG + chr4_4:30810126-30810145 None:intergenic 40.0%
TAGAGTGACATGAATGTGAG+GGG + chr4_4:30810359-30810378 None:intergenic 40.0%
TCAAAACTGCAGGTAGATCA+AGG - chr4_4:30810490-30810509 Msa0677290:intron 40.0%
GTTGTAACCCCTTACAGAAT+AGG + chr4_4:30810701-30810720 None:intergenic 40.0%
TTCTGTAAGGGGTTACAACA+TGG - chr4_4:30810702-30810721 Msa0677290:intron 40.0%
TCTGTAAGGGGTTACAACAT+GGG - chr4_4:30810703-30810722 Msa0677290:intron 40.0%
TATTACCTCGAGGATGTTTC+TGG + chr4_4:30810743-30810762 None:intergenic 40.0%
TTTCTTGTTCTTCCTACAGC+TGG - chr4_4:30810854-30810873 Msa0677290:intron 40.0%
GAAATCCGACAGAAGTCTAT+AGG - chr4_4:30810967-30810986 Msa0677290:CDS 40.0%
GACAGAAGTCTATAGGAGAA+TGG - chr4_4:30810974-30810993 Msa0677290:CDS 40.0%
TTTAGTGAGAGCGGAATATG+CGG - chr4_4:30811034-30811053 Msa0677290:CDS 40.0%
TATGCGGTTGATCATAACTC+AGG - chr4_4:30811050-30811069 Msa0677290:CDS 40.0%
GTTGATCATAACTCAGGAAC+AGG - chr4_4:30811056-30811075 Msa0677290:CDS 40.0%
CATGAGTCGTAGTGTATGTT+TGG - chr4_4:30811119-30811138 Msa0677290:CDS 40.0%
!!! TGTTTGGTTCTTTTCTACCG+CGG - chr4_4:30811135-30811154 Msa0677290:intron 40.0%
TGGCTGAAATATTTCTTCCG+CGG + chr4_4:30811155-30811174 None:intergenic 40.0%
!!! TACTGGGGTTGGTTTTCTAT+AGG - chr4_4:30811223-30811242 Msa0677290:intron 40.0%
AGTTATCAATAGTAGACCGC+AGG + chr4_4:30811302-30811321 None:intergenic 40.0%
TTCCATCCGTTCTCATGAAT+TGG + chr4_4:30811346-30811365 None:intergenic 40.0%
CCTACAATCCTCATCACAAA+GGG + chr4_4:30811404-30811423 None:intergenic 40.0%
TCCTACAATCCTCATCACAA+AGG + chr4_4:30811405-30811424 None:intergenic 40.0%
!!! TTTTGGTCTTGATTTGGTGG+TGG - chr4_4:30811539-30811558 Msa0677290:intron 40.0%
! GACTAGTATCAGAGTACCTG+AGG + chr4_4:30808656-30808675 None:intergenic 45.0%
GGAGTATGCACATCCGTATT+TGG - chr4_4:30808800-30808819 Msa0677290:three_prime_UTR 45.0%
AAGCTGAGTCCAGTATTCAC+TGG - chr4_4:30808879-30808898 Msa0677290:three_prime_UTR 45.0%
TGAGTCCAGTATTCACTGGT+GGG - chr4_4:30808883-30808902 Msa0677290:three_prime_UTR 45.0%
ATCGATACCAGTACCACTGA+GGG + chr4_4:30809213-30809232 None:intergenic 45.0%
TATCGATACCAGTACCACTG+AGG + chr4_4:30809214-30809233 None:intergenic 45.0%
! GCTTGCACCACTTCCATTTT+TGG - chr4_4:30809405-30809424 Msa0677290:intron 45.0%
CAAAAGGATGCATCAAGCAG+GGG - chr4_4:30809465-30809484 Msa0677290:CDS 45.0%
! ATTTGAAACGTCGGCTGATG+CGG + chr4_4:30809624-30809643 None:intergenic 45.0%
AACAGGCCCTTAGTCAATGT+AGG + chr4_4:30809680-30809699 None:intergenic 45.0%
! ACATTGACTAAGGGCCTGTT+TGG - chr4_4:30809680-30809699 Msa0677290:CDS 45.0%
! TTGGTGGGCCTAAGATACAT+TGG - chr4_4:30810155-30810174 Msa0677290:intron 45.0%
GTTTGCAGCCAAAGTAGATG+AGG - chr4_4:30810216-30810235 Msa0677290:intron 45.0%
! GGATAAGGCTTGGTTGTTGT+TGG + chr4_4:30810295-30810314 None:intergenic 45.0%
! CAAGCCTTATCCCACTAAGT+GGG - chr4_4:30810303-30810322 Msa0677290:intron 45.0%
! AAGCCTTATCCCACTAAGTG+GGG - chr4_4:30810304-30810323 Msa0677290:intron 45.0%
GTTTCTCCAGTTGAAGTCTG+TGG - chr4_4:30810570-30810589 Msa0677290:intron 45.0%
GGTTACAACATGGGTGAGAT+TGG - chr4_4:30810712-30810731 Msa0677290:intron 45.0%
GTGTATGCCTTTGCAGAACA+TGG - chr4_4:30810912-30810931 Msa0677290:CDS 45.0%
AGTCTATAGGAGAATGGGTC+AGG - chr4_4:30810980-30810999 Msa0677290:CDS 45.0%
GTCTATAGGAGAATGGGTCA+GGG - chr4_4:30810981-30811000 Msa0677290:CDS 45.0%
TCTATAGGAGAATGGGTCAG+GGG - chr4_4:30810982-30811001 Msa0677290:CDS 45.0%
CTTCATACCAGCACCATAAG+AGG + chr4_4:30811009-30811028 None:intergenic 45.0%
!! TATGGTGCTGGTATGAAGCT+TGG - chr4_4:30811011-30811030 Msa0677290:CDS 45.0%
GAAGCTTGGTTTAGTGAGAG+CGG - chr4_4:30811025-30811044 Msa0677290:CDS 45.0%
GTCCAATTCATGAGAACGGA+TGG - chr4_4:30811341-30811360 Msa0677290:CDS 45.0%
CCCTTTGTGATGAGGATTGT+AGG - chr4_4:30811401-30811420 Msa0677290:CDS 45.0%
! GGTGGTGGCACAAGTATATT+TGG - chr4_4:30811554-30811573 Msa0677290:intron 45.0%
!!! TAAAATTGTTTTTTTTTTAT+AGG + chr4_4:30809852-30809871 None:intergenic 5.0%
AGCAGCTTACACGGAGAGTT+CGG + chr4_4:30808848-30808867 None:intergenic 50.0%
GGCTGTTGAAGCAGCTTACA+CGG + chr4_4:30808857-30808876 None:intergenic 50.0%
CTGAGTCCAGTATTCACTGG+TGG - chr4_4:30808882-30808901 Msa0677290:three_prime_UTR 50.0%
! TGGATGAAGTGCCCTCCATA+TGG - chr4_4:30808913-30808932 Msa0677290:three_prime_UTR 50.0%
! GGATGAAGTGCCCTCCATAT+GGG - chr4_4:30808914-30808933 Msa0677290:three_prime_UTR 50.0%
ACGGAGCTATAGTTGGAAGC+AGG - chr4_4:30809285-30809304 Msa0677290:CDS 50.0%
TGGAAGCAGGAACATGTTCC+AGG - chr4_4:30809298-30809317 Msa0677290:CDS 50.0%
GTGCAAGCATCTACCAACTG+TGG + chr4_4:30809393-30809412 None:intergenic 50.0%
GCTGATGCGGTGGAATAACA+GGG + chr4_4:30809611-30809630 None:intergenic 50.0%
GACTAAGGGCCTGTTTGGAT+TGG - chr4_4:30809685-30809704 Msa0677290:CDS 50.0%
GGCCCTAAATATACGGCACT+AGG - chr4_4:30809974-30809993 Msa0677290:intron 50.0%
CAGAACCAGCTTATCAGCTC+GGG + chr4_4:30810030-30810049 None:intergenic 50.0%
GCAGAACCAGCTTATCAGCT+CGG + chr4_4:30810031-30810050 None:intergenic 50.0%
!! GAGCTGATAAGCTGGTTCTG+CGG - chr4_4:30810030-30810049 Msa0677290:intron 50.0%
!! AGCTGATAAGCTGGTTCTGC+GGG - chr4_4:30810031-30810050 Msa0677290:intron 50.0%
TGGAGGGAAGGCAACTAGAA+GGG + chr4_4:30810254-30810273 None:intergenic 50.0%
TTGGAGGGAAGGCAACTAGA+AGG + chr4_4:30810255-30810274 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG + chr4_4:30810305-30810324 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG - chr4_4:30810302-30810321 Msa0677290:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr4_4:30810308-30810327 Msa0677290:intron 50.0%
TTTAGCCGACCCCACTTAGT+GGG + chr4_4:30810316-30810335 None:intergenic 50.0%
AGTGACATGAATGTGAGGGG+AGG + chr4_4:30810356-30810375 None:intergenic 50.0%
! GTAGATCAAGGCCTTGGTGT+TGG - chr4_4:30810502-30810521 Msa0677290:intron 50.0%
GGAAATTGCTGCCAACACCA+AGG + chr4_4:30810516-30810535 None:intergenic 50.0%
TCTCCAGTTGAAGTCTGTGG+AGG - chr4_4:30810573-30810592 Msa0677290:intron 50.0%
CTTCCTCCACAGACTTCAAC+TGG + chr4_4:30810579-30810598 None:intergenic 50.0%
CAGTTGAAGTCTGTGGAGGA+AGG - chr4_4:30810577-30810596 Msa0677290:intron 50.0%
CTTGTCCTCCATGGTCACTA+TGG - chr4_4:30810625-30810644 Msa0677290:intron 50.0%
AACCACCATAGTGACCATGG+AGG + chr4_4:30810633-30810652 None:intergenic 50.0%
CACAACCACCATAGTGACCA+TGG + chr4_4:30810636-30810655 None:intergenic 50.0%
GGTCACTATGGTGGTTGTGT+AGG - chr4_4:30810637-30810656 Msa0677290:intron 50.0%
TTGGGGGTCCCTATTCTGTA+AGG - chr4_4:30810689-30810708 Msa0677290:intron 50.0%
TGGGGGTCCCTATTCTGTAA+GGG - chr4_4:30810690-30810709 Msa0677290:intron 50.0%
!! ATCGGTGCCATGTTCTGCAA+AGG + chr4_4:30810922-30810941 None:intergenic 50.0%
! TCCAGTATTCACTGGTGGGC+CGG - chr4_4:30808887-30808906 Msa0677290:three_prime_UTR 55.0%
GCACGGTCAACCCATATGGA+GGG + chr4_4:30808927-30808946 None:intergenic 55.0%
AGCACGGTCAACCCATATGG+AGG + chr4_4:30808928-30808947 None:intergenic 55.0%
! TCCATATGGGTTGACCGTGC+TGG - chr4_4:30808927-30808946 Msa0677290:three_prime_UTR 55.0%
ACCAGCACGGTCAACCCATA+TGG + chr4_4:30808931-30808950 None:intergenic 55.0%
GTACCACTGAGGGTTGTTGG+AGG + chr4_4:30809203-30809222 None:intergenic 55.0%
CCAGTACCACTGAGGGTTGT+TGG + chr4_4:30809206-30809225 None:intergenic 55.0%
CCAACAACCCTCAGTGGTAC+TGG - chr4_4:30809203-30809222 Msa0677290:CDS 55.0%
GGCTGATGCGGTGGAATAAC+AGG + chr4_4:30809612-30809631 None:intergenic 55.0%
TCAGTCCCGAGCTGATAAGC+TGG - chr4_4:30810022-30810041 Msa0677290:intron 55.0%
!! GCTGATAAGCTGGTTCTGCG+GGG - chr4_4:30810032-30810051 Msa0677290:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr4_4:30810310-30810329 None:intergenic 55.0%
GTTTAGCCGACCCCACTTAG+TGG + chr4_4:30810317-30810336 None:intergenic 55.0%
CTGCAGGTAGATCAAGGCCT+TGG - chr4_4:30810496-30810515 Msa0677290:intron 55.0%
! AAGTCTGTGGAGGAAGGTGC+TGG - chr4_4:30810583-30810602 Msa0677290:intron 55.0%
TGACCATGGAGGACAAGCAC+TGG + chr4_4:30810622-30810641 None:intergenic 55.0%
GTCCTCCATGGTCACTATGG+TGG - chr4_4:30810628-30810647 Msa0677290:intron 55.0%
GGGGGTCCCTATTCTGTAAG+GGG - chr4_4:30810691-30810710 Msa0677290:intron 55.0%
AGCAGCCAGAAACATCCTCG+AGG - chr4_4:30810735-30810754 Msa0677290:intron 55.0%
!! GCAGAACATGGCACCGATCT+AGG - chr4_4:30810924-30810943 Msa0677290:CDS 55.0%
ATGGGTCAGGGGTCCTCTTA+TGG - chr4_4:30810993-30811012 Msa0677290:CDS 55.0%
AGTGAACTCCCTGCTGCTAC+TGG - chr4_4:30811206-30811225 Msa0677290:intron 55.0%
GTGAACTCCCTGCTGCTACT+GGG - chr4_4:30811207-30811226 Msa0677290:intron 55.0%
TGAACTCCCTGCTGCTACTG+GGG - chr4_4:30811208-30811227 Msa0677290:intron 55.0%
AACCAACCCCAGTAGCAGCA+GGG + chr4_4:30811217-30811236 None:intergenic 55.0%
AAACCAACCCCAGTAGCAGC+AGG + chr4_4:30811218-30811237 None:intergenic 55.0%
ACACGGAGAGTTCGGTTGCG+TGG + chr4_4:30808840-30808859 None:intergenic 60.0%
! CCAGTATTCACTGGTGGGCC+GGG - chr4_4:30808888-30808907 Msa0677290:three_prime_UTR 60.0%
! CAGTATTCACTGGTGGGCCG+GGG - chr4_4:30808889-30808908 Msa0677290:three_prime_UTR 60.0%
! AGTATTCACTGGTGGGCCGG+GGG - chr4_4:30808890-30808909 Msa0677290:three_prime_UTR 60.0%
GGACCTCCAACAACCCTCAG+TGG - chr4_4:30809197-30809216 Msa0677290:CDS 60.0%
! TGAAACGTCGGCTGATGCGG+TGG + chr4_4:30809621-30809640 None:intergenic 60.0%
!! AGGACAAGCACTGGTGGTGG+TGG + chr4_4:30810613-30810632 None:intergenic 60.0%
!! TGGAGGACAAGCACTGGTGG+TGG + chr4_4:30810616-30810635 None:intergenic 60.0%
!! CCATGGAGGACAAGCACTGG+TGG + chr4_4:30810619-30810638 None:intergenic 60.0%
CCACCAGTGCTTGTCCTCCA+TGG - chr4_4:30810616-30810635 Msa0677290:intron 60.0%
CTTCCTACAGCTGGCAGCTG+AGG - chr4_4:30810863-30810882 Msa0677290:intron 60.0%
GTACCTCAGCTGCCAGCTGT+AGG + chr4_4:30810869-30810888 None:intergenic 60.0%
CAGGGGTCCTCTTATGGTGC+TGG - chr4_4:30810999-30811018 Msa0677290:CDS 60.0%
CCCGGCCCACCAGTGAATAC+TGG + chr4_4:30808891-30808910 None:intergenic 65.0%
!! GAGGGCACTTCATCCACCCC+CGG + chr4_4:30808909-30808928 None:intergenic 65.0%
CTCCCTGCTGCTACTGGGGT+TGG - chr4_4:30811212-30811231 Msa0677290:intron 65.0%
! ATTCACTGGTGGGCCGGGGG+TGG - chr4_4:30808893-30808912 Msa0677290:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 30808596 30811619 30808596 ID=Msa0677290;Name=Msa0677290
chr4_4 mRNA 30808596 30811619 30808596 ID=Msa0677290-mRNA-1;Parent=Msa0677290;Name=Msa0677290-mRNA-1;_AED=0.06;_eAED=0.06;_QI=0|0.75|0.6|0.8|1|1|5|507|332
chr4_4 exon 30808596 30809342 30808596 ID=Msa0677290-mRNA-1:exon:7696;Parent=Msa0677290-mRNA-1
chr4_4 exon 30809459 30809713 30809459 ID=Msa0677290-mRNA-1:exon:7695;Parent=Msa0677290-mRNA-1
chr4_4 exon 30810896 30811144 30810896 ID=Msa0677290-mRNA-1:exon:7694;Parent=Msa0677290-mRNA-1
chr4_4 exon 30811244 30811435 30811244 ID=Msa0677290-mRNA-1:exon:7693;Parent=Msa0677290-mRNA-1
chr4_4 exon 30811557 30811619 30811557 ID=Msa0677290-mRNA-1:exon:7692;Parent=Msa0677290-mRNA-1
chr4_4 CDS 30811557 30811619 30811557 ID=Msa0677290-mRNA-1:cds;Parent=Msa0677290-mRNA-1
chr4_4 CDS 30811244 30811435 30811244 ID=Msa0677290-mRNA-1:cds;Parent=Msa0677290-mRNA-1
chr4_4 CDS 30810896 30811144 30810896 ID=Msa0677290-mRNA-1:cds;Parent=Msa0677290-mRNA-1
chr4_4 CDS 30809459 30809713 30809459 ID=Msa0677290-mRNA-1:cds;Parent=Msa0677290-mRNA-1
chr4_4 CDS 30809103 30809342 30809103 ID=Msa0677290-mRNA-1:cds;Parent=Msa0677290-mRNA-1
chr4_4 three_prime_UTR 30808596 30809102 30808596 ID=Msa0677290-mRNA-1:three_prime_utr;Parent=Msa0677290-mRNA-1
Gene Sequence

>Msa0677290

CTGCAAGGATTGAATAGATCTCTTACTGGTTCAGTGACAACTAGCAACTTCTTGAATCCTCAGGATGATCTTGCATTTAAAATGGAGTATGCACATCCGTATTTGGATGGTGTAAATGATCCACGCAACCGAACTCTCCGTGTAAGCTGCTTCAACAGCCGAAAGCTGAGTCCAGTATTCACTGGTGGGCCGGGGGTGGATGAAGTGCCCTCCATATGGGTTGACCGTGCTGGTGTAAAAGCCAATATCACTGAGAATTTTTCTCGTCAGAGTAAATTCACTTATGGATTAGTAATGGAAGAGATAATAACACGTGATGAAACCAATCATATCTGTTCCAATGGTCAAAGAGTATTGCCTAATGGAGGAATTAGTGCAGATGGACCTCCAACAACCCTCAGTGGTACTGGTATCGATAAGATGGCATTTTTACAAGCTAATATTACAAGGGATAACACAAGGTTTGTGAACGGAGCTATAGTTGGAAGCAGGAACATGTTCCAGGTAGATCAAGGCCTTGGTGTTGGCAGCAATTTCCCATTCTTTAACCGTCACCAATTAACTTTGACTCAGTTTCTCCAGTTGAAGTCTGTGGAGGAAGGTGCTGGTAAACCACCACCACCAGTGCTTGTCCTCCATGGTCACTATGGTGGTTGTGTAGGTGATCTTCCAAGTTATGATGCTTTTACTCTTGGGGGTCCCTATTCTGTAAGGGGTTACAACATGGGTGAGATTGGAGCAGCCAGAAACATCCTCGAGCTGGCAGCTGAGGTACGTATACCTATTAAAGGTACACACGTGTATGCCTTTGCAGAACATGGCACCGATCTAGGAAGTTCAAAAGATGTCAAAGGAAATCCGACAGAAGTCTATAGGAGAATGGGTCAGGGGTCCTCTTATGGTGCTGGTATGAAGCTTGGTTTAGTGAGAGCGGAATATGCGGTTGATCATAACTCAGGAACAGGTGCAATATTTTTCCGATTTGGAGAAAGATTTTGA

Protein sequence

>Msa0677290

LQGLNRSLTGSVTTSNFLNPQDDLAFKMEYAHPYLDGVNDPRNRTLRVSCFNSRKLSPVFTGGPGVDEVPSIWVDRAGVKANITENFSRQSKFTYGLVMEEIITRDETNHICSNGQRVLPNGGISADGPPTTLSGTGIDKMAFLQANITRDNTRFVNGAIVGSRNMFQVDQGLGVGSNFPFFNRHQLTLTQFLQLKSVEEGAGKPPPPVLVLHGHYGGCVGDLPSYDAFTLGGPYSVRGYNMGEIGAARNILELAAEVRIPIKGTHVYAFAEHGTDLGSSKDVKGNPTEVYRRMGQGSSYGAGMKLGLVRAEYAVDHNSGTGAIFFRFGERF*