Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634640 | BAL45199.1 | 63.545 | 299 | 52 | 4 | 1 | 242 | 176 | 474 | 5.36e-117 | 354 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634640 | sp|H1A981|C7263_MEDTR | 37.333 | 300 | 129 | 6 | 1 | 242 | 172 | 470 | 2.04e-57 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634640 | H1A980 | 63.545 | 299 | 52 | 4 | 1 | 242 | 176 | 474 | 2.56e-117 | 354 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0634640 | Msa0754680 | 0.816885 | 4.390279e-52 | -8.615850e-47 |
| Msa0634640 | Msa0797350 | 0.804148 | 2.482048e-49 | -8.615850e-47 |
| Msa0634640 | Msa0834860 | 0.831298 | 1.807205e-55 | -8.615850e-47 |
| Msa0634640 | Msa1358770 | 0.902665 | 7.683370e-79 | -8.615850e-47 |
| Msa0634640 | Msa1414030 | 0.835330 | 1.786340e-56 | -8.615850e-47 |
| Msa0145980 | Msa0634640 | -0.808499 | 3.006118e-50 | -8.615850e-47 |
| Msa0594930 | Msa0634640 | 0.811293 | 7.528508e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634640 | MtrunA17_Chr4g0014051 | 63.545 | 299 | 52 | 4 | 1 | 242 | 176 | 474 | 9.36e-121 | 353 |
| Msa0634640 | MtrunA17_Chr2g0313801 | 40.532 | 301 | 119 | 6 | 1 | 242 | 163 | 462 | 9.81e-66 | 212 |
| Msa0634640 | MtrunA17_Chr2g0313821 | 40.199 | 301 | 120 | 6 | 1 | 242 | 163 | 462 | 9.87e-65 | 209 |
| Msa0634640 | MtrunA17_Chr2g0313781 | 39.465 | 299 | 121 | 6 | 3 | 242 | 177 | 474 | 3.64e-63 | 205 |
| Msa0634640 | MtrunA17_Chr2g0313811 | 40.468 | 299 | 118 | 6 | 3 | 242 | 177 | 474 | 4.23e-63 | 205 |
| Msa0634640 | MtrunA17_Chr2g0313751 | 39.867 | 301 | 121 | 6 | 1 | 242 | 190 | 489 | 5.40e-62 | 202 |
| Msa0634640 | MtrunA17_Chr8g0354571 | 38.000 | 300 | 127 | 6 | 1 | 242 | 172 | 470 | 1.04e-60 | 199 |
| Msa0634640 | MtrunA17_Chr2g0313791 | 38.538 | 301 | 125 | 6 | 1 | 242 | 158 | 457 | 1.47e-60 | 198 |
| Msa0634640 | MtrunA17_Chr2g0313831 | 38.870 | 301 | 124 | 6 | 1 | 242 | 163 | 462 | 3.03e-59 | 195 |
| Msa0634640 | MtrunA17_Chr2g0313761 | 38.870 | 301 | 124 | 6 | 1 | 242 | 158 | 457 | 7.11e-59 | 194 |
| Msa0634640 | MtrunA17_Chr2g0307301 | 37.874 | 301 | 127 | 8 | 1 | 242 | 165 | 464 | 2.03e-57 | 190 |
| Msa0634640 | MtrunA17_Chr2g0288661 | 37.209 | 301 | 129 | 6 | 1 | 242 | 165 | 464 | 2.79e-55 | 184 |
| Msa0634640 | MtrunA17_Chr2g0307291 | 36.877 | 301 | 130 | 8 | 1 | 242 | 165 | 464 | 3.71e-55 | 184 |
| Msa0634640 | MtrunA17_Chr8g0354511 | 35.000 | 300 | 136 | 6 | 1 | 242 | 172 | 470 | 1.90e-54 | 182 |
| Msa0634640 | MtrunA17_Chr8g0354531 | 35.117 | 299 | 136 | 6 | 1 | 242 | 294 | 591 | 2.62e-54 | 184 |
| Msa0634640 | MtrunA17_Chr5g0446131 | 34.551 | 301 | 137 | 6 | 1 | 242 | 161 | 460 | 3.49e-54 | 181 |
| Msa0634640 | MtrunA17_Chr2g0313771 | 36.667 | 300 | 130 | 6 | 1 | 242 | 172 | 469 | 1.57e-53 | 180 |
| Msa0634640 | MtrunA17_Chr8g0354541 | 55.696 | 79 | 35 | 0 | 164 | 242 | 46 | 124 | 1.56e-28 | 106 |
| Msa0634640 | MtrunA17_Chr4g0063221 | 27.213 | 305 | 152 | 8 | 1 | 242 | 168 | 465 | 1.04e-23 | 99.0 |
| Msa0634640 | MtrunA17_Chr1g0193811 | 27.907 | 215 | 125 | 4 | 55 | 242 | 251 | 462 | 1.06e-20 | 90.5 |
| Msa0634640 | MtrunA17_Chr1g0203141 | 25.753 | 299 | 158 | 10 | 1 | 242 | 170 | 461 | 1.85e-18 | 84.0 |
| Msa0634640 | MtrunA17_Chr1g0203151 | 26.298 | 289 | 149 | 10 | 11 | 242 | 176 | 457 | 2.95e-17 | 80.5 |
| Msa0634640 | MtrunA17_Chr8g0354561 | 38.406 | 138 | 75 | 4 | 1 | 128 | 254 | 391 | 2.08e-16 | 77.8 |
| Msa0634640 | MtrunA17_Chr6g0479681 | 28.636 | 220 | 109 | 7 | 66 | 242 | 261 | 475 | 6.78e-16 | 76.6 |
| Msa0634640 | MtrunA17_Chr7g0235261 | 25.287 | 261 | 131 | 7 | 40 | 242 | 202 | 456 | 2.85e-15 | 74.7 |
| Msa0634640 | MtrunA17_Chr3g0128461 | 43.956 | 91 | 47 | 1 | 156 | 242 | 380 | 470 | 2.94e-15 | 74.7 |
| Msa0634640 | MtrunA17_Chr1g0182861 | 42.254 | 71 | 41 | 0 | 172 | 242 | 39 | 109 | 3.67e-15 | 70.9 |
| Msa0634640 | MtrunA17_Chr4g0004601 | 23.333 | 300 | 166 | 7 | 1 | 242 | 184 | 477 | 6.35e-15 | 73.6 |
| Msa0634640 | MtrunA17_Chr6g0472171 | 38.028 | 71 | 44 | 0 | 172 | 242 | 34 | 104 | 5.50e-14 | 67.4 |
| Msa0634640 | MtrunA17_Chr2g0308651 | 29.814 | 161 | 109 | 2 | 86 | 242 | 201 | 361 | 2.45e-13 | 68.9 |
| Msa0634640 | MtrunA17_Chr8g0362731 | 41.573 | 89 | 48 | 1 | 158 | 242 | 266 | 354 | 3.58e-13 | 68.2 |
| Msa0634640 | MtrunA17_Chr8g0336361 | 39.394 | 99 | 54 | 2 | 148 | 242 | 408 | 504 | 3.95e-13 | 68.2 |
| Msa0634640 | MtrunA17_Chr3g0108651 | 42.623 | 61 | 35 | 0 | 182 | 242 | 2 | 62 | 1.21e-11 | 60.5 |
| Msa0634640 | MtrunA17_Chr8g0364081 | 35.955 | 89 | 53 | 1 | 158 | 242 | 399 | 487 | 4.20e-11 | 62.4 |
| Msa0634640 | MtrunA17_Chr7g0262111 | 24.453 | 274 | 130 | 12 | 31 | 242 | 193 | 451 | 9.77e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0634640 | AT3G14610.1 | 34.333 | 300 | 135 | 6 | 1 | 242 | 163 | 458 | 1.73e-55 | 185 |
| Msa0634640 | AT3G14660.2 | 34.459 | 296 | 133 | 5 | 4 | 242 | 21 | 312 | 2.66e-55 | 181 |
| Msa0634640 | AT3G14660.1 | 34.114 | 299 | 136 | 5 | 1 | 242 | 164 | 458 | 3.44e-54 | 182 |
| Msa0634640 | AT3G14690.1 | 34.114 | 299 | 136 | 5 | 1 | 242 | 164 | 458 | 1.07e-53 | 181 |
| Msa0634640 | AT3G14620.1 | 33.887 | 301 | 133 | 7 | 1 | 242 | 168 | 461 | 1.11e-53 | 181 |
| Msa0634640 | AT3G14690.2 | 34.114 | 299 | 136 | 5 | 1 | 242 | 199 | 493 | 3.05e-53 | 180 |
| Msa0634640 | AT3G14680.1 | 34.783 | 299 | 134 | 5 | 1 | 242 | 164 | 458 | 1.41e-52 | 177 |
| Msa0634640 | AT3G14640.1 | 35.880 | 301 | 130 | 8 | 1 | 242 | 164 | 460 | 2.11e-52 | 177 |
| Msa0634640 | AT3G14640.2 | 35.880 | 301 | 130 | 8 | 1 | 242 | 186 | 482 | 3.37e-52 | 177 |
| Msa0634640 | AT3G14630.1 | 33.779 | 299 | 137 | 5 | 1 | 242 | 160 | 454 | 1.44e-51 | 175 |
| Msa0634640 | AT3G14630.2 | 33.779 | 299 | 137 | 5 | 1 | 242 | 215 | 509 | 1.82e-51 | 176 |
| Msa0634640 | AT3G14650.1 | 34.448 | 299 | 135 | 5 | 1 | 242 | 164 | 458 | 1.89e-51 | 175 |
| Msa0634640 | AT2G26710.1 | 28.013 | 307 | 143 | 9 | 1 | 242 | 168 | 461 | 1.07e-30 | 119 |
| Msa0634640 | AT3G14660.3 | 33.544 | 158 | 71 | 2 | 1 | 128 | 164 | 317 | 3.37e-26 | 105 |
| Msa0634640 | AT2G46950.1 | 30.317 | 221 | 118 | 7 | 51 | 242 | 303 | 516 | 1.23e-20 | 90.9 |
| Msa0634640 | AT5G24900.2 | 26.578 | 301 | 157 | 8 | 4 | 242 | 58 | 356 | 7.25e-18 | 82.4 |
| Msa0634640 | AT5G24900.1 | 26.578 | 301 | 157 | 8 | 4 | 242 | 175 | 473 | 1.29e-17 | 82.0 |
| Msa0634640 | AT2G46960.1 | 27.556 | 225 | 128 | 7 | 46 | 242 | 129 | 346 | 1.30e-17 | 81.6 |
| Msa0634640 | AT1G75130.1 | 26.471 | 272 | 129 | 9 | 30 | 242 | 190 | 449 | 1.62e-17 | 81.6 |
| Msa0634640 | AT2G46960.2 | 28.241 | 216 | 120 | 7 | 55 | 242 | 254 | 462 | 2.06e-17 | 81.3 |
| Msa0634640 | AT4G27710.1 | 28.111 | 217 | 122 | 5 | 55 | 242 | 252 | 463 | 3.21e-17 | 80.9 |
| Msa0634640 | AT5G24910.1 | 45.556 | 90 | 45 | 1 | 157 | 242 | 389 | 478 | 4.80e-16 | 77.4 |
| Msa0634640 | AT5G52400.1 | 22.742 | 299 | 164 | 8 | 1 | 242 | 177 | 465 | 9.27e-15 | 73.6 |
| Msa0634640 | AT1G67110.1 | 25.676 | 222 | 126 | 7 | 51 | 242 | 244 | 456 | 2.88e-14 | 72.0 |
| Msa0634640 | AT5G38450.1 | 26.818 | 220 | 130 | 6 | 51 | 242 | 246 | 462 | 1.24e-12 | 67.4 |
Find 56 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACTCCTTCAGAGAATCTTTC+TGG | 0.187831 | 4_3:-22218572 | None:intergenic |
| TGCACCAAGAGAAGGAATTT+TGG | 0.239270 | 4_3:+22218525 | Msa0634640:CDS |
| TTGCTTTCATTCCAGGTTAC+AGG | 0.257560 | 4_3:+22215686 | Msa0634640:intron |
| TGCTTGCCACTCAGGATGTT+TGG | 0.295481 | 4_3:-22217323 | None:intergenic |
| CAAATGCAGAATTGCTTGTT+TGG | 0.309900 | 4_3:+22217284 | Msa0634640:CDS |
| GGATATCACTTGAAACATTT+AGG | 0.321049 | 4_3:-22215567 | None:intergenic |
| TGATGATATGATCAACAAAT+TGG | 0.323345 | 4_3:+22215489 | Msa0634640:CDS |
| TGACATATTAGGCATACTTT+TGG | 0.327498 | 4_3:+22217159 | Msa0634640:CDS |
| TCTTGGTGCATCATTGATAT+AGG | 0.334972 | 4_3:-22218512 | None:intergenic |
| AAAGTTTCATACTTGCCTTT+TGG | 0.335318 | 4_3:+22218614 | Msa0634640:CDS |
| TCACATGATTGGCAAAATAT+TGG | 0.336911 | 4_3:-22215469 | None:intergenic |
| ATCCTGGCTCGTGCAGGCTT+TGG | 0.346627 | 4_3:+22215586 | Msa0634640:CDS |
| CCTACTAACAATGACATATT+AGG | 0.352083 | 4_3:+22217148 | Msa0634640:CDS |
| GTGGTGGAGGAATGAGTTTA+AGG | 0.370833 | 4_3:+22217215 | Msa0634640:CDS |
| CTTGCCTTTGCTTGCCACTC+AGG | 0.372223 | 4_3:-22217331 | None:intergenic |
| CTCCCCAAAATTCCTTCTCT+TGG | 0.378386 | 4_3:-22218529 | None:intergenic |
| CCTAATATGTCATTGTTAGT+AGG | 0.388714 | 4_3:-22217148 | None:intergenic |
| AATTGCTTTCATCCTCCTCT+TGG | 0.400561 | 4_3:-22217056 | None:intergenic |
| AAGTGTTAGGTCTCCAAGTT+TGG | 0.406524 | 4_3:-22218465 | None:intergenic |
| TGATCATATCATCACATGAT+TGG | 0.406791 | 4_3:-22215480 | None:intergenic |
| CTTGAAACATTTAGGACAAA+AGG | 0.408467 | 4_3:-22215559 | None:intergenic |
| CTACTCCTGCAGGAAGTGTT+AGG | 0.425563 | 4_3:-22218478 | None:intergenic |
| ATCCTCCTCTTGGTATAAGT+TGG | 0.430468 | 4_3:-22217046 | None:intergenic |
| CTTCGTAAAGACACCAAACT+TGG | 0.441505 | 4_3:+22218452 | Msa0634640:CDS |
| AATCCAGATTATGAAAAGAT+TGG | 0.456629 | 4_3:+22217385 | Msa0634640:CDS |
| CACTAATGAAGATCATAAAC+AGG | 0.460964 | 4_3:+22217098 | Msa0634640:CDS |
| TTCCAAAGCCTGCACGAGCC+AGG | 0.462558 | 4_3:-22215588 | None:intergenic |
| ACTCATTCCTCCACCACCAT+TGG | 0.479517 | 4_3:-22217209 | None:intergenic |
| AAATGTTTCAAGTGATATCC+TGG | 0.480114 | 4_3:+22215570 | Msa0634640:CDS |
| TGGTGGAGGAATGAGTTTAA+GGG | 0.482031 | 4_3:+22217216 | Msa0634640:CDS |
| GGAGTTTCAAAGGCAACAAA+TGG | 0.500602 | 4_3:+22218590 | Msa0634640:CDS |
| TCTGAGAAAGCCAATGGTGG+TGG | 0.513843 | 4_3:+22217199 | Msa0634640:CDS |
| AGTGATATCCTGGCTCGTGC+AGG | 0.519243 | 4_3:+22215580 | Msa0634640:CDS |
| GAGAAAGCCAATGGTGGTGG+AGG | 0.520243 | 4_3:+22217202 | Msa0634640:CDS |
| ATTATGAGTTCTACTCCTGC+AGG | 0.521730 | 4_3:-22218488 | None:intergenic |
| ATCTAACTCACAAGGCCCAT+TGG | 0.523831 | 4_3:-22215530 | None:intergenic |
| AAGTAGTGTCTTCATCCAAT+GGG | 0.524164 | 4_3:+22215515 | Msa0634640:CDS |
| ACTCTAGGACCCCAACCAAA+AGG | 0.538164 | 4_3:-22218629 | None:intergenic |
| ATTCTCTGAAGGAGTTTCAA+AGG | 0.540060 | 4_3:+22218580 | Msa0634640:CDS |
| AAAGTAGTGTCTTCATCCAA+TGG | 0.542611 | 4_3:+22215514 | Msa0634640:CDS |
| AGATTAAAAGCAATAAAAGC+AGG | 0.552238 | 4_3:+22217121 | Msa0634640:CDS |
| CTGAGTGGCAAGCAAAGGCA+AGG | 0.568066 | 4_3:+22217332 | Msa0634640:CDS |
| ATCAATGATGCACCAAGAGA+AGG | 0.580713 | 4_3:+22218517 | Msa0634640:CDS |
| GGCCTTGTGAGTTAGATGTA+TGG | 0.590381 | 4_3:+22215536 | Msa0634640:CDS |
| ACATCCTGAGTGGCAAGCAA+AGG | 0.601402 | 4_3:+22217327 | Msa0634640:CDS |
| AAGGAATCTGAGAAAGCCAA+TGG | 0.607784 | 4_3:+22217193 | Msa0634640:CDS |
| TTTAAGGGATGTAGTTGATG+AGG | 0.610932 | 4_3:+22217231 | Msa0634640:CDS |
| AAACCAGAAAGATTCTCTGA+AGG | 0.613957 | 4_3:+22218569 | Msa0634640:CDS |
| TGCCAACTTATACCAAGAGG+AGG | 0.617412 | 4_3:+22217044 | Msa0634640:CDS |
| GGAGACCTAACACTTCCTGC+AGG | 0.618549 | 4_3:+22218473 | Msa0634640:CDS |
| GTGGCAAGCAAAGGCAAGGG+AGG | 0.623033 | 4_3:+22217336 | Msa0634640:CDS |
| GGCCATACATCTAACTCACA+AGG | 0.647134 | 4_3:-22215538 | None:intergenic |
| TGAGTGGCAAGCAAAGGCAA+GGG | 0.659236 | 4_3:+22217333 | Msa0634640:CDS |
| TCTTGCCAACTTATACCAAG+AGG | 0.675752 | 4_3:+22217041 | Msa0634640:CDS |
| GAATCTGAGAAAGCCAATGG+TGG | 0.691136 | 4_3:+22217196 | Msa0634640:CDS |
| TACTTGCCAAACATCCTGAG+TGG | 0.693047 | 4_3:+22217317 | Msa0634640:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATGCTTATTTATTTATTTAT+TGG | + | chr4_3:22217013-22217032 | Msa0634640:intron | 10.0% |
| !! | TTATTTATTTATTTATTGGT+AGG | + | chr4_3:22217017-22217036 | Msa0634640:intron | 10.0% |
| !! | GTTTAAATATATAAAGTTAG+TGG | + | chr4_3:22216165-22216184 | Msa0634640:intron | 15.0% |
| !!! | TCAATAAAAAGTACTTAAAT+AGG | - | chr4_3:22216193-22216212 | None:intergenic | 15.0% |
| !!! | TTCAATAAAAGTATCTATTA+AGG | - | chr4_3:22216253-22216272 | None:intergenic | 15.0% |
| !! | ATTAATAAGGACTATTTAAA+CGG | - | chr4_3:22216309-22216328 | None:intergenic | 15.0% |
| !!! | GTCAAATTTTTCTTATAAAT+AGG | + | chr4_3:22217597-22217616 | Msa0634640:intron | 15.0% |
| !!! | ACAAATGTTTTATTTTTGAA+AGG | - | chr4_3:22217955-22217974 | None:intergenic | 15.0% |
| !!! | AATTATCATTTTTATGAAAC+AGG | + | chr4_3:22218367-22218386 | Msa0634640:intron | 15.0% |
| !! | TATATATGTAGGATTTATTC+TGG | + | chr4_3:22215733-22215752 | Msa0634640:intron | 20.0% |
| !! | AAGAAAAACAGTCAAAATTA+AGG | + | chr4_3:22215770-22215789 | Msa0634640:intron | 20.0% |
| !! | AGAAAAACAGTCAAAATTAA+GGG | + | chr4_3:22215771-22215790 | Msa0634640:intron | 20.0% |
| !! | TTTCTACACATTATAAACAA+AGG | + | chr4_3:22215854-22215873 | Msa0634640:intron | 20.0% |
| !! | GTAATAAAATATGTACTACT+TGG | + | chr4_3:22216109-22216128 | Msa0634640:intron | 20.0% |
| !!! | TTATTTTTTCTTTTGCAAGT+GGG | - | chr4_3:22216136-22216155 | None:intergenic | 20.0% |
| !!! | TTTATTTTTTCTTTTGCAAG+TGG | - | chr4_3:22216137-22216156 | None:intergenic | 20.0% |
| !! | GTTTAAATAGTCCTTATTAA+TGG | + | chr4_3:22216308-22216327 | Msa0634640:intron | 20.0% |
| !!! | ATTTTTTTGACCAATAGTTA+AGG | + | chr4_3:22216477-22216496 | Msa0634640:intron | 20.0% |
| !!! | ACTTTTGGAATCAAATTATA+AGG | + | chr4_3:22217174-22217193 | Msa0634640:CDS | 20.0% |
| !! | GTCAAATGTTTCTTATAAAT+AGG | - | chr4_3:22217498-22217517 | None:intergenic | 20.0% |
| !! | ATGTATTTGATCTATATTCT+AGG | + | chr4_3:22217541-22217560 | Msa0634640:intron | 20.0% |
| !!! | ATTTTTCTTATAAATAGGAC+CGG | + | chr4_3:22217602-22217621 | Msa0634640:intron | 20.0% |
| !! | ATTGAATAATGACAAACTTT+AGG | + | chr4_3:22218069-22218088 | Msa0634640:intron | 20.0% |
| !! | GAATAAGCAAATATGAATTT+AGG | - | chr4_3:22218263-22218282 | None:intergenic | 20.0% |
| ! | TGATGATATGATCAACAAAT+TGG | + | chr4_3:22215489-22215508 | Msa0634640:CDS | 25.0% |
| ! | ACATATATAACTACCAAAAC+AGG | - | chr4_3:22215722-22215741 | None:intergenic | 25.0% |
| !!! | GTTTTGGTAGTTATATATGT+AGG | + | chr4_3:22215722-22215741 | Msa0634640:intron | 25.0% |
| ! | ATAAAAGACACTTAATATGC+AGG | - | chr4_3:22215831-22215850 | None:intergenic | 25.0% |
| !! | AAAGGTCTTTTTGCATATTA+AGG | + | chr4_3:22215927-22215946 | Msa0634640:intron | 25.0% |
| ! | AAGCAACGAACAATTATATA+CGG | + | chr4_3:22216043-22216062 | Msa0634640:intron | 25.0% |
| ! | TTGCATATGTTAAGATTCTT+AGG | + | chr4_3:22216402-22216421 | Msa0634640:intron | 25.0% |
| ! | TATGTTAAGATTCTTAGGAA+TGG | + | chr4_3:22216407-22216426 | Msa0634640:intron | 25.0% |
| ! | AAATTGGAATCCTTAACTAT+TGG | - | chr4_3:22216490-22216509 | None:intergenic | 25.0% |
| ! | ATAGTTAAGGATTCCAATTT+AGG | + | chr4_3:22216490-22216509 | Msa0634640:intron | 25.0% |
| !! | GTATTGAAAATTGAAGTGTT+TGG | - | chr4_3:22216535-22216554 | None:intergenic | 25.0% |
| ! | TAATTTCGCTAGATAATTCT+GGG | - | chr4_3:22216641-22216660 | None:intergenic | 25.0% |
| ! | ATTAGAAGTTGTTACACAAT+TGG | + | chr4_3:22216657-22216676 | Msa0634640:intron | 25.0% |
| ! | ATCTGTTGAGTCATATAAAT+AGG | + | chr4_3:22216683-22216702 | Msa0634640:intron | 25.0% |
| ! | TTCATCTATCACATACTAAA+TGG | - | chr4_3:22216905-22216924 | None:intergenic | 25.0% |
| ! | TATGATTTACTGAAACTAGA+AGG | - | chr4_3:22216964-22216983 | None:intergenic | 25.0% |
| ! | AGATTAAAAGCAATAAAAGC+AGG | + | chr4_3:22217121-22217140 | Msa0634640:CDS | 25.0% |
| ! | TGAAACTATTCTATTTAGCA+GGG | + | chr4_3:22217254-22217273 | Msa0634640:intron | 25.0% |
| ! | AATCCAGATTATGAAAAGAT+TGG | + | chr4_3:22217385-22217404 | Msa0634640:CDS | 25.0% |
| ! | TTGAGACATGTATTTAAGAA+TGG | + | chr4_3:22218039-22218058 | Msa0634640:intron | 25.0% |
| !! | ATGAATTTAGGTTTGAAACA+TGG | - | chr4_3:22218251-22218270 | None:intergenic | 25.0% |
| ! | AGTGTACCAAAATAAAGTAA+AGG | - | chr4_3:22218347-22218366 | None:intergenic | 25.0% |
| ! | TATCTAGATATCATAATAGC+TGG | - | chr4_3:22218431-22218450 | None:intergenic | 25.0% |
| TCACATGATTGGCAAAATAT+TGG | - | chr4_3:22215472-22215491 | None:intergenic | 30.0% | |
| TGATCATATCATCACATGAT+TGG | - | chr4_3:22215483-22215502 | None:intergenic | 30.0% | |
| ! | CTTGAAACATTTAGGACAAA+AGG | - | chr4_3:22215562-22215581 | None:intergenic | 30.0% |
| GGATATCACTTGAAACATTT+AGG | - | chr4_3:22215570-22215589 | None:intergenic | 30.0% | |
| ! | AAATGTTTCAAGTGATATCC+TGG | + | chr4_3:22215570-22215589 | Msa0634640:CDS | 30.0% |
| ! | TTTAAGTTTGCTTTCATTCC+AGG | + | chr4_3:22215679-22215698 | Msa0634640:intron | 30.0% |
| AACAGTCAAAATTAAGGGTT+TGG | + | chr4_3:22215776-22215795 | Msa0634640:intron | 30.0% | |
| !! | TCATTTTTCTTTCTCCAATG+GGG | - | chr4_3:22216014-22216033 | None:intergenic | 30.0% |
| !! | CTCATTTTTCTTTCTCCAAT+GGG | - | chr4_3:22216015-22216034 | None:intergenic | 30.0% |
| !! | ACTCATTTTTCTTTCTCCAA+TGG | - | chr4_3:22216016-22216035 | None:intergenic | 30.0% |
| TTAAGATTCTTAGGAATGGT+TGG | + | chr4_3:22216411-22216430 | Msa0634640:intron | 30.0% | |
| CACTAAGAAACACTCTTTAA+CGG | - | chr4_3:22216603-22216622 | None:intergenic | 30.0% | |
| CTAATTTCGCTAGATAATTC+TGG | - | chr4_3:22216642-22216661 | None:intergenic | 30.0% | |
| TCATAATCTCATAGGAAAGA+TGG | - | chr4_3:22216770-22216789 | None:intergenic | 30.0% | |
| TCCTATGAGATTATGATCTT+TGG | + | chr4_3:22216774-22216793 | Msa0634640:intron | 30.0% | |
| GTTAAACTGTTGAGAATCAT+GGG | - | chr4_3:22216809-22216828 | None:intergenic | 30.0% | |
| AGTTAAACTGTTGAGAATCA+TGG | - | chr4_3:22216810-22216829 | None:intergenic | 30.0% | |
| CACTAATGAAGATCATAAAC+AGG | + | chr4_3:22217098-22217117 | Msa0634640:CDS | 30.0% | |
| CCTAATATGTCATTGTTAGT+AGG | - | chr4_3:22217151-22217170 | None:intergenic | 30.0% | |
| CCTACTAACAATGACATATT+AGG | + | chr4_3:22217148-22217167 | Msa0634640:CDS | 30.0% | |
| ! | TGACATATTAGGCATACTTT+TGG | + | chr4_3:22217159-22217178 | Msa0634640:CDS | 30.0% |
| GTGAAACTATTCTATTTAGC+AGG | + | chr4_3:22217253-22217272 | Msa0634640:intron | 30.0% | |
| ! | TGACCAATCTTTTCATAATC+TGG | - | chr4_3:22217391-22217410 | None:intergenic | 30.0% |
| ATGCTTAAAAATACTCCCTT+CGG | + | chr4_3:22217471-22217490 | Msa0634640:intron | 30.0% | |
| TTCTTATAAATAGGACCGAA+GGG | - | chr4_3:22217489-22217508 | None:intergenic | 30.0% | |
| TTTCTTATAAATAGGACCGA+AGG | - | chr4_3:22217490-22217509 | None:intergenic | 30.0% | |
| ATTTGATCTATATTCTAGGC+AGG | + | chr4_3:22217545-22217564 | Msa0634640:intron | 30.0% | |
| ACAACCATCTATTTACTAAG+CGG | - | chr4_3:22217681-22217700 | None:intergenic | 30.0% | |
| TGCAATTGCTATCTTTAATG+AGG | + | chr4_3:22217725-22217744 | Msa0634640:intron | 30.0% | |
| ATTGCTATCTTTAATGAGGT+TGG | + | chr4_3:22217729-22217748 | Msa0634640:intron | 30.0% | |
| !! | GAGACACCTTTACTTTATTT+TGG | + | chr4_3:22218338-22218357 | Msa0634640:intron | 30.0% |
| TGATTCTTCAAGAAAGTCTA+AGG | + | chr4_3:22218396-22218415 | Msa0634640:intron | 30.0% | |
| TAGATATCATAATAGCTGGT+GGG | - | chr4_3:22218427-22218446 | None:intergenic | 30.0% | |
| ! | AAAGTTTCATACTTGCCTTT+TGG | + | chr4_3:22218614-22218633 | Msa0634640:CDS | 30.0% |
| AAAGTAGTGTCTTCATCCAA+TGG | + | chr4_3:22215514-22215533 | Msa0634640:CDS | 35.0% | |
| AAGTAGTGTCTTCATCCAAT+GGG | + | chr4_3:22215515-22215534 | Msa0634640:CDS | 35.0% | |
| !! | TTTGGAAGTAGCTTTGAAGA+AGG | + | chr4_3:22215604-22215623 | Msa0634640:intron | 35.0% |
| ! | ATTTTTCTTTCTCCAATGGG+GGG | - | chr4_3:22216012-22216031 | None:intergenic | 35.0% |
| ! | CATTTTTCTTTCTCCAATGG+GGG | - | chr4_3:22216013-22216032 | None:intergenic | 35.0% |
| ACAATGGCAGTCCATTAATA+AGG | - | chr4_3:22216322-22216341 | None:intergenic | 35.0% | |
| !! | TTATTAATGGACTGCCATTG+TGG | + | chr4_3:22216321-22216340 | Msa0634640:intron | 35.0% |
| CAGCGAATAGTTTCCTAAAT+TGG | - | chr4_3:22216506-22216525 | None:intergenic | 35.0% | |
| GCCAAAGATCATAATCTCAT+AGG | - | chr4_3:22216778-22216797 | None:intergenic | 35.0% | |
| ! | TTTAAGGGATGTAGTTGATG+AGG | + | chr4_3:22217231-22217250 | Msa0634640:CDS | 35.0% |
| CAAATGCAGAATTGCTTGTT+TGG | + | chr4_3:22217284-22217303 | Msa0634640:CDS | 35.0% | |
| TTCTTATAAATAGGACCGGA+AGG | + | chr4_3:22217606-22217625 | Msa0634640:intron | 35.0% | |
| CGCAAATTTATTACTCCTTC+CGG | - | chr4_3:22217624-22217643 | None:intergenic | 35.0% | |
| TCTACCGCTTAGTAAATAGA+TGG | + | chr4_3:22217674-22217693 | Msa0634640:intron | 35.0% | |
| CAACTTCTACTATCGAAAGA+GGG | - | chr4_3:22218159-22218178 | None:intergenic | 35.0% | |
| TCAACTTCTACTATCGAAAG+AGG | - | chr4_3:22218160-22218179 | None:intergenic | 35.0% | |
| CATCTCAAACGTAAACACAA+GGG | + | chr4_3:22218316-22218335 | Msa0634640:intron | 35.0% | |
| CTAGATATCATAATAGCTGG+TGG | - | chr4_3:22218428-22218447 | None:intergenic | 35.0% | |
| ! | TCTTGGTGCATCATTGATAT+AGG | - | chr4_3:22218515-22218534 | None:intergenic | 35.0% |
| AAACCAGAAAGATTCTCTGA+AGG | + | chr4_3:22218569-22218588 | Msa0634640:CDS | 35.0% | |
| ! | ATTCTCTGAAGGAGTTTCAA+AGG | + | chr4_3:22218580-22218599 | Msa0634640:CDS | 35.0% |
| ! | TTTCATACTTGCCTTTTGGT+TGG | + | chr4_3:22218618-22218637 | Msa0634640:CDS | 35.0% |
| !! | TTCATACTTGCCTTTTGGTT+GGG | + | chr4_3:22218619-22218638 | Msa0634640:CDS | 35.0% |
| TTGCTTTCATTCCAGGTTAC+AGG | + | chr4_3:22215686-22215705 | Msa0634640:intron | 40.0% | |
| TTCATTCCAGGTTACAGGTA+AGG | + | chr4_3:22215691-22215710 | Msa0634640:intron | 40.0% | |
| ACAAGGATCACTCCTTGTTA+AGG | + | chr4_3:22215985-22216004 | Msa0634640:intron | 40.0% | |
| TCTCTCTCATGAGCAACTAA+CGG | + | chr4_3:22216068-22216087 | Msa0634640:intron | 40.0% | |
| !! | ACTCATAAGAGCATCCACAA+TGG | - | chr4_3:22216338-22216357 | None:intergenic | 40.0% |
| TTGAGAATCATGGGATGAGA+TGG | - | chr4_3:22216800-22216819 | None:intergenic | 40.0% | |
| TCTTGCCAACTTATACCAAG+AGG | + | chr4_3:22217041-22217060 | Msa0634640:CDS | 40.0% | |
| ATCCTCCTCTTGGTATAAGT+TGG | - | chr4_3:22217049-22217068 | None:intergenic | 40.0% | |
| AATTGCTTTCATCCTCCTCT+TGG | - | chr4_3:22217059-22217078 | None:intergenic | 40.0% | |
| AAGGAATCTGAGAAAGCCAA+TGG | + | chr4_3:22217193-22217212 | Msa0634640:CDS | 40.0% | |
| TGGTGGAGGAATGAGTTTAA+GGG | + | chr4_3:22217216-22217235 | Msa0634640:CDS | 40.0% | |
| !!! | GAGGAAGCTTTTCAAGTGTT+TGG | + | chr4_3:22217355-22217374 | Msa0634640:CDS | 40.0% |
| TTGTGGTTGACTGCGAATAT+CGG | - | chr4_3:22217789-22217808 | None:intergenic | 40.0% | |
| ! | AAGTATTGCCTTGTGTGTTG+TGG | - | chr4_3:22217806-22217825 | None:intergenic | 40.0% |
| AACCGTCTCTGTCATAAGAA+CGG | - | chr4_3:22218183-22218202 | None:intergenic | 40.0% | |
| ! | GTTTGAGATGGTGACTTGAT+CGG | - | chr4_3:22218306-22218325 | None:intergenic | 40.0% |
| CCTTGTGTTTACGTTTGAGA+TGG | - | chr4_3:22218318-22218337 | None:intergenic | 40.0% | |
| CCATCTCAAACGTAAACACA+AGG | + | chr4_3:22218315-22218334 | Msa0634640:intron | 40.0% | |
| CTTCGTAAAGACACCAAACT+TGG | + | chr4_3:22218452-22218471 | Msa0634640:CDS | 40.0% | |
| AAGTGTTAGGTCTCCAAGTT+TGG | - | chr4_3:22218468-22218487 | None:intergenic | 40.0% | |
| ATTATGAGTTCTACTCCTGC+AGG | - | chr4_3:22218491-22218510 | None:intergenic | 40.0% | |
| ATCAATGATGCACCAAGAGA+AGG | + | chr4_3:22218517-22218536 | Msa0634640:CDS | 40.0% | |
| ! | TGCACCAAGAGAAGGAATTT+TGG | + | chr4_3:22218525-22218544 | Msa0634640:CDS | 40.0% |
| ! | GCACCAAGAGAAGGAATTTT+GGG | + | chr4_3:22218526-22218545 | Msa0634640:CDS | 40.0% |
| ! | CACCAAGAGAAGGAATTTTG+GGG | + | chr4_3:22218527-22218546 | Msa0634640:CDS | 40.0% |
| ACTCCTTCAGAGAATCTTTC+TGG | - | chr4_3:22218575-22218594 | None:intergenic | 40.0% | |
| GGAGTTTCAAAGGCAACAAA+TGG | + | chr4_3:22218590-22218609 | Msa0634640:CDS | 40.0% | |
| !! | TCATACTTGCCTTTTGGTTG+GGG | + | chr4_3:22218620-22218639 | Msa0634640:CDS | 40.0% |
| ATCTAACTCACAAGGCCCAT+TGG | - | chr4_3:22215533-22215552 | None:intergenic | 45.0% | |
| ! | GGCCTTGTGAGTTAGATGTA+TGG | + | chr4_3:22215536-22215555 | Msa0634640:CDS | 45.0% |
| GGCCATACATCTAACTCACA+AGG | - | chr4_3:22215541-22215560 | None:intergenic | 45.0% | |
| ! | AGGTAAGGCTTCACCTGTTT+TGG | + | chr4_3:22215706-22215725 | Msa0634640:intron | 45.0% |
| GTCCTCATAGCATCTCCAAT+GGG | + | chr4_3:22215949-22215968 | Msa0634640:intron | 45.0% | |
| TCCTCATAGCATCTCCAATG+GGG | + | chr4_3:22215950-22215969 | Msa0634640:intron | 45.0% | |
| TGCCAACTTATACCAAGAGG+AGG | + | chr4_3:22217044-22217063 | Msa0634640:CDS | 45.0% | |
| GAATCTGAGAAAGCCAATGG+TGG | + | chr4_3:22217196-22217215 | Msa0634640:CDS | 45.0% | |
| ! | GTGGTGGAGGAATGAGTTTA+AGG | + | chr4_3:22217215-22217234 | Msa0634640:CDS | 45.0% |
| TACTTGCCAAACATCCTGAG+TGG | + | chr4_3:22217317-22217336 | Msa0634640:CDS | 45.0% | |
| AGGCACACTCAATGCAAAGT+CGG | - | chr4_3:22217764-22217783 | None:intergenic | 45.0% | |
| TGTGGTTGACTGCGAATATC+GGG | - | chr4_3:22217788-22217807 | None:intergenic | 45.0% | |
| GACCGTTCTTATGACAGAGA+CGG | + | chr4_3:22218178-22218197 | Msa0634640:intron | 45.0% | |
| CTCCCCAAAATTCCTTCTCT+TGG | - | chr4_3:22218532-22218551 | None:intergenic | 45.0% | |
| !! | GAATTTTGGGGAGATGATGC+TGG | + | chr4_3:22218539-22218558 | Msa0634640:CDS | 45.0% |
| !! | ATTAAATTATAAATAAACAA+AGG | + | chr4_3:22215909-22215928 | Msa0634640:intron | 5.0% |
| !! | AGATTAAATAAAATAATTAA+TGG | + | chr4_3:22216863-22216882 | Msa0634640:intron | 5.0% |
| GTGAAGCCTTACCTGTAACC+TGG | - | chr4_3:22215700-22215719 | None:intergenic | 50.0% | |
| GGTCCTCATAGCATCTCCAA+TGG | + | chr4_3:22215948-22215967 | Msa0634640:intron | 50.0% | |
| CCTCATAGCATCTCCAATGG+GGG | + | chr4_3:22215951-22215970 | Msa0634640:intron | 50.0% | |
| CTCATAGCATCTCCAATGGG+GGG | + | chr4_3:22215952-22215971 | Msa0634640:intron | 50.0% | |
| GTTGAGTAAGAACCCCCCAT+TGG | - | chr4_3:22215967-22215986 | None:intergenic | 50.0% | |
| TGGGGGGTTCTTACTCAACA+AGG | + | chr4_3:22215968-22215987 | Msa0634640:intron | 50.0% | |
| TCTGAGAAAGCCAATGGTGG+TGG | + | chr4_3:22217199-22217218 | Msa0634640:CDS | 50.0% | |
| ACTCATTCCTCCACCACCAT+TGG | - | chr4_3:22217212-22217231 | None:intergenic | 50.0% | |
| TGCTTGCCACTCAGGATGTT+TGG | - | chr4_3:22217326-22217345 | None:intergenic | 50.0% | |
| ACATCCTGAGTGGCAAGCAA+AGG | + | chr4_3:22217327-22217346 | Msa0634640:CDS | 50.0% | |
| TGAGTGGCAAGCAAAGGCAA+GGG | + | chr4_3:22217333-22217352 | Msa0634640:CDS | 50.0% | |
| GCACACTCAATGCAAAGTCG+GGG | - | chr4_3:22217762-22217781 | None:intergenic | 50.0% | |
| GGCACACTCAATGCAAAGTC+GGG | - | chr4_3:22217763-22217782 | None:intergenic | 50.0% | |
| GTGGTTGACTGCGAATATCG+GGG | - | chr4_3:22217787-22217806 | None:intergenic | 50.0% | |
| GCAGTCAACCACAACACACA+AGG | + | chr4_3:22217795-22217814 | Msa0634640:intron | 50.0% | |
| !! | CTACTCCTGCAGGAAGTGTT+AGG | - | chr4_3:22218481-22218500 | None:intergenic | 50.0% |
| ! | AGTGATATCCTGGCTCGTGC+AGG | + | chr4_3:22215580-22215599 | Msa0634640:CDS | 55.0% |
| CCCCCATTGGAGATGCTATG+AGG | - | chr4_3:22215954-22215973 | None:intergenic | 55.0% | |
| CCAATGGGGGGTCCTTAACA+AGG | - | chr4_3:22216000-22216019 | None:intergenic | 55.0% | |
| CCTTGTTAAGGACCCCCCAT+TGG | + | chr4_3:22215997-22216016 | Msa0634640:intron | 55.0% | |
| !! | GAGAAAGCCAATGGTGGTGG+AGG | + | chr4_3:22217202-22217221 | Msa0634640:CDS | 55.0% |
| CTTGCCTTTGCTTGCCACTC+AGG | - | chr4_3:22217334-22217353 | None:intergenic | 55.0% | |
| CTGAGTGGCAAGCAAAGGCA+AGG | + | chr4_3:22217332-22217351 | Msa0634640:CDS | 55.0% | |
| GTTGACTGCGAATATCGGGG+AGG | - | chr4_3:22217784-22217803 | None:intergenic | 55.0% | |
| GGAGACCTAACACTTCCTGC+AGG | + | chr4_3:22218473-22218492 | Msa0634640:CDS | 55.0% | |
| ! | ATCCTGGCTCGTGCAGGCTT+TGG | + | chr4_3:22215586-22215605 | Msa0634640:CDS | 60.0% |
| TTCCAAAGCCTGCACGAGCC+AGG | - | chr4_3:22215591-22215610 | None:intergenic | 60.0% | |
| GTGGCAAGCAAAGGCAAGGG+AGG | + | chr4_3:22217336-22217355 | Msa0634640:CDS | 60.0% | |
| !! | TCGAAAGAGGGCGTCTGTCG+TGG | - | chr4_3:22218147-22218166 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 22215422 | 22218649 | 22215422 | ID=Msa0634640;Name=Msa0634640 |
| chr4_3 | mRNA | 22215422 | 22218649 | 22215422 | ID=Msa0634640-mRNA-1;Parent=Msa0634640;Name=Msa0634640-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|0.2|0|0.83|0.8|0.66|6|0|242 |
| chr4_3 | exon | 22215422 | 22215427 | 22215422 | ID=Msa0634640-mRNA-1:exon:5751;Parent=Msa0634640-mRNA-1 |
| chr4_3 | exon | 22215460 | 22215610 | 22215460 | ID=Msa0634640-mRNA-1:exon:5752;Parent=Msa0634640-mRNA-1 |
| chr4_3 | exon | 22215701 | 22215707 | 22215701 | ID=Msa0634640-mRNA-1:exon:5753;Parent=Msa0634640-mRNA-1 |
| chr4_3 | exon | 22217039 | 22217252 | 22217039 | ID=Msa0634640-mRNA-1:exon:5754;Parent=Msa0634640-mRNA-1 |
| chr4_3 | exon | 22217275 | 22217420 | 22217275 | ID=Msa0634640-mRNA-1:exon:5755;Parent=Msa0634640-mRNA-1 |
| chr4_3 | exon | 22218448 | 22218649 | 22218448 | ID=Msa0634640-mRNA-1:exon:5756;Parent=Msa0634640-mRNA-1 |
| chr4_3 | CDS | 22215422 | 22215427 | 22215422 | ID=Msa0634640-mRNA-1:cds;Parent=Msa0634640-mRNA-1 |
| chr4_3 | CDS | 22215460 | 22215610 | 22215460 | ID=Msa0634640-mRNA-1:cds;Parent=Msa0634640-mRNA-1 |
| chr4_3 | CDS | 22215701 | 22215707 | 22215701 | ID=Msa0634640-mRNA-1:cds;Parent=Msa0634640-mRNA-1 |
| chr4_3 | CDS | 22217039 | 22217252 | 22217039 | ID=Msa0634640-mRNA-1:cds;Parent=Msa0634640-mRNA-1 |
| chr4_3 | CDS | 22217275 | 22217420 | 22217275 | ID=Msa0634640-mRNA-1:cds;Parent=Msa0634640-mRNA-1 |
| chr4_3 | CDS | 22218448 | 22218649 | 22218448 | ID=Msa0634640-mRNA-1:cds;Parent=Msa0634640-mRNA-1 |
| Gene Sequence |
| Protein sequence |
