Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635540 | KEH41604.1 | 40.976 | 205 | 70 | 4 | 4 | 169 | 132 | 324 | 3.12e-35 | 136 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635540 | A0A072VHU7 | 40.976 | 205 | 70 | 4 | 4 | 169 | 132 | 324 | 1.49e-35 | 136 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0635540 | Msa0766630 | 0.809632 | 1.719336e-50 | -8.615850e-47 |
| Msa0635540 | Msa0887990 | 0.800206 | 1.606745e-48 | -8.615850e-47 |
| Msa0635540 | Msa1292400 | 0.810993 | 8.742658e-51 | -8.615850e-47 |
| Msa0635540 | Msa1451570 | 0.826178 | 3.129044e-54 | -8.615850e-47 |
| Msa0512890 | Msa0635540 | 0.810156 | 1.325667e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0635540 | MtrunA17_Chr1g0206481 | 45.333 | 75 | 38 | 1 | 2 | 73 | 170 | 244 | 9.65e-19 | 81.3 |
| Msa0635540 | MtrunA17_Chr3g0096071 | 42.857 | 70 | 37 | 1 | 7 | 73 | 61 | 130 | 2.23e-17 | 76.6 |
| Msa0635540 | MtrunA17_Chr1g0158831 | 37.143 | 70 | 41 | 1 | 5 | 71 | 36 | 105 | 1.60e-14 | 68.2 |
| Msa0635540 | MtrunA17_Chr2g0278111 | 37.143 | 70 | 41 | 1 | 5 | 71 | 173 | 242 | 1.68e-13 | 67.0 |
| Msa0635540 | MtrunA17_Chr5g0411141 | 37.143 | 70 | 41 | 1 | 5 | 71 | 174 | 243 | 1.76e-13 | 67.0 |
| Msa0635540 | MtrunA17_Chr5g0423441 | 37.143 | 70 | 41 | 1 | 5 | 71 | 173 | 242 | 2.62e-13 | 65.9 |
| Msa0635540 | MtrunA17_Chr2g0280031 | 38.235 | 68 | 39 | 1 | 5 | 69 | 163 | 230 | 6.56e-13 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 34 sgRNAs with CRISPR-Local
Find 302 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCCAAAACGATGCTTGGTTT+TGG | 0.272034 | 4_3:+24688523 | None:intergenic |
| TTTCCCAATGCCTTGCTTGT+TGG | 0.278260 | 4_3:+24688844 | None:intergenic |
| GCCAAAACCAAGCATCGTTT+TGG | 0.299840 | 4_3:-24688524 | Msa0635540:CDS |
| TCAGACACTTCAGGTATGTT+AGG | 0.344285 | 4_3:+24689980 | None:intergenic |
| ACTTCTTAAGCTTGCATAGC+TGG | 0.373535 | 4_3:+24690212 | None:intergenic |
| TTGGATGACCTGTCTGTTGA+TGG | 0.382590 | 4_3:-24688571 | Msa0635540:CDS |
| AAATATATTTACCTGCTCAT+TGG | 0.401997 | 4_3:+24690944 | None:intergenic |
| ATTTGATGCATCCACAATAA+AGG | 0.420859 | 4_3:-24688548 | Msa0635540:CDS |
| CTCTTATAGGAAAATGTTGA+AGG | 0.439549 | 4_3:-24688919 | Msa0635540:intron |
| GACTCCAACAAGCAAGGCAT+TGG | 0.440458 | 4_3:-24688848 | Msa0635540:CDS |
| TGCAAGCTTAAGAAGTATTA+CGG | 0.443248 | 4_3:-24690205 | Msa0635540:intron |
| TGCTGCTATTGTGGAATCAT+TGG | 0.447992 | 4_3:-24688590 | Msa0635540:CDS |
| TCTATGTAATCAGACACTTC+AGG | 0.465687 | 4_3:+24689971 | None:intergenic |
| CGGTTCCCCAAAACGATGCT+TGG | 0.471573 | 4_3:+24688517 | None:intergenic |
| GAAGAGAGCTGCTGCTATTG+TGG | 0.492665 | 4_3:-24688599 | Msa0635540:intron |
| ACTCCAACAAGCAAGGCATT+GGG | 0.499017 | 4_3:-24688847 | Msa0635540:CDS |
| AAGCAAGGCATTGGGAAAGA+TGG | 0.506350 | 4_3:-24688839 | Msa0635540:CDS |
| GCATGACTCATCGCTTCCTA+TGG | 0.506428 | 4_3:-24690245 | Msa0635540:CDS |
| AAAGATGGTTGTTTGTGAGC+TGG | 0.523351 | 4_3:-24688824 | Msa0635540:CDS |
| TCAATATTGAGCCAATGAGC+AGG | 0.555042 | 4_3:-24690955 | None:intergenic |
| TGTGAAAATGCAGCATTGCT+TGG | 0.562801 | 4_3:-24690272 | Msa0635540:CDS |
| CGTCGAGACTGTTTGTGAGT+TGG | 0.574832 | 4_3:-24689052 | Msa0635540:CDS |
| CATCAAATCCATCAACAGAC+AGG | 0.578628 | 4_3:+24688563 | None:intergenic |
| AGCTGGAATATAACAACCAT+AGG | 0.592196 | 4_3:+24690229 | None:intergenic |
| AGGAGTTGATTCAAGTAACA+AGG | 0.598003 | 4_3:-24688899 | Msa0635540:CDS |
| TGTTGTGACTCCAACAAGCA+AGG | 0.611546 | 4_3:-24688854 | Msa0635540:CDS |
| TATATAGCTTGCTAATGATG+AGG | 0.617218 | 4_3:-24689088 | Msa0635540:intron |
| TAGAATTCATTGTACCATGT+GGG | 0.618909 | 4_3:-24690305 | Msa0635540:CDS |
| CACAGCATAATCATCCCACA+TGG | 0.619134 | 4_3:+24690291 | None:intergenic |
| ATAGAATTCATTGTACCATG+TGG | 0.644251 | 4_3:-24690306 | Msa0635540:CDS |
| AAGTGTCTGATTACATAGAG+AGG | 0.648651 | 4_3:-24689967 | Msa0635540:CDS |
| GTTGGCTGATGAAAATGATG+TGG | 0.698429 | 4_3:-24689034 | Msa0635540:intron |
| GCTGGCTGATCAAAATTCAG+CGG | 0.718348 | 4_3:-24688806 | Msa0635540:intron |
| TAACAAGGACGAAATTACTG+TGG | 0.722347 | 4_3:-24688884 | Msa0635540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTAATTAAATATAGCA+AGG | + | chr4_3:24689745-24689764 | None:intergenic | 15.0% |
| !!! | TTTTGATTTGTTAAAGAATT+TGG | - | chr4_3:24690701-24690720 | Msa0635540:intron | 15.0% |
| !!! | TTTTCCTAAAACAAAAAAAA+TGG | + | chr4_3:24690753-24690772 | None:intergenic | 15.0% |
| !!! | GTTTTTAATTAAATATAGCA+AGG | + | chr4_3:24689745-24689764 | None:intergenic | 15.0% |
| !!! | TTTTGATTTGTTAAAGAATT+TGG | - | chr4_3:24690701-24690720 | Msa0635540:intron | 15.0% |
| !!! | TTTTCCTAAAACAAAAAAAA+TGG | + | chr4_3:24690753-24690772 | None:intergenic | 15.0% |
| !! | ATGAAGTTAAACTTATACTT+AGG | + | chr4_3:24688738-24688757 | None:intergenic | 20.0% |
| !!! | TAAGTATAAGTTTAACTTCA+TGG | - | chr4_3:24688737-24688756 | Msa0635540:intron | 20.0% |
| !!! | AAGTATAAGTTTAACTTCAT+GGG | - | chr4_3:24688738-24688757 | Msa0635540:intron | 20.0% |
| !!! | ATTTTTTGTATAGCATTCAA+TGG | - | chr4_3:24688872-24688891 | Msa0635540:CDS | 20.0% |
| !!! | TATTAAATTTCAAGTGTCAT+AGG | - | chr4_3:24689411-24689430 | Msa0635540:intron | 20.0% |
| !! | ATTATTAATGCCATGAAATA+TGG | - | chr4_3:24689581-24689600 | Msa0635540:intron | 20.0% |
| !!! | AAATTATACAGCTATTTTGA+AGG | + | chr4_3:24690037-24690056 | None:intergenic | 20.0% |
| !! | TATAGTAAAAAAAATGACCA+TGG | - | chr4_3:24690214-24690233 | Msa0635540:CDS | 20.0% |
| !! | TGAAAGAAATGTAAATGAAT+TGG | + | chr4_3:24690458-24690477 | None:intergenic | 20.0% |
| !!! | TTTTCCTATAAGAGAAAAAA+GGG | + | chr4_3:24690529-24690548 | None:intergenic | 20.0% |
| !!! | ATTTTCCTATAAGAGAAAAA+AGG | + | chr4_3:24690530-24690549 | None:intergenic | 20.0% |
| !! | ATGAAGTTAAACTTATACTT+AGG | + | chr4_3:24688738-24688757 | None:intergenic | 20.0% |
| !!! | TAAGTATAAGTTTAACTTCA+TGG | - | chr4_3:24688737-24688756 | Msa0635540:intron | 20.0% |
| !!! | AAGTATAAGTTTAACTTCAT+GGG | - | chr4_3:24688738-24688757 | Msa0635540:intron | 20.0% |
| !!! | ATTTTTTGTATAGCATTCAA+TGG | - | chr4_3:24688872-24688891 | Msa0635540:CDS | 20.0% |
| !!! | TATTAAATTTCAAGTGTCAT+AGG | - | chr4_3:24689411-24689430 | Msa0635540:intron | 20.0% |
| !! | ATTATTAATGCCATGAAATA+TGG | - | chr4_3:24689581-24689600 | Msa0635540:intron | 20.0% |
| !!! | AAATTATACAGCTATTTTGA+AGG | + | chr4_3:24690037-24690056 | None:intergenic | 20.0% |
| !! | TATAGTAAAAAAAATGACCA+TGG | - | chr4_3:24690214-24690233 | Msa0635540:CDS | 20.0% |
| !! | TGAAAGAAATGTAAATGAAT+TGG | + | chr4_3:24690458-24690477 | None:intergenic | 20.0% |
| !!! | TTTTCCTATAAGAGAAAAAA+GGG | + | chr4_3:24690529-24690548 | None:intergenic | 20.0% |
| !!! | ATTTTCCTATAAGAGAAAAA+AGG | + | chr4_3:24690530-24690549 | None:intergenic | 20.0% |
| !!! | TTTTTTTTGATTGAGTAGTG+TGG | - | chr4_3:24688586-24688605 | Msa0635540:CDS | 25.0% |
| ! | TTCAAGGATCAAATAGAAAA+GGG | - | chr4_3:24688649-24688668 | Msa0635540:intron | 25.0% |
| ! | CTTATGTTTGGAGAAATTTA+TGG | - | chr4_3:24688677-24688696 | Msa0635540:intron | 25.0% |
| ! | CATTATCAAAGAAACTATGA+AGG | - | chr4_3:24688987-24689006 | Msa0635540:intron | 25.0% |
| ! | ATTATGAATGTTAATCACGT+TGG | - | chr4_3:24689096-24689115 | Msa0635540:intron | 25.0% |
| !!! | ACGTTGGTAATTATGTTTAT+GGG | - | chr4_3:24689112-24689131 | Msa0635540:intron | 25.0% |
| !!! | GTACTATGTCTACTTTTAAT+TGG | - | chr4_3:24689289-24689308 | Msa0635540:intron | 25.0% |
| !!! | TCTACTTTTAATTGGTGATA+GGG | - | chr4_3:24689297-24689316 | Msa0635540:intron | 25.0% |
| ! | ATTCATTAGACTATAATGCT+AGG | + | chr4_3:24689378-24689397 | None:intergenic | 25.0% |
| !!! | GGTATTTCTAATGCATTTTA+TGG | - | chr4_3:24689432-24689451 | Msa0635540:intron | 25.0% |
| !! | TGATCATTAATCGAGTTTTA+TGG | - | chr4_3:24689819-24689838 | Msa0635540:intron | 25.0% |
| !!! | TGCACCATTTTTTTTGTTTT+AGG | - | chr4_3:24690746-24690765 | Msa0635540:intron | 25.0% |
| !!! | TGTTTTAGGAAAAAAATCCA+TGG | - | chr4_3:24690760-24690779 | Msa0635540:intron | 25.0% |
| !!! | TTTTTTTTGATTGAGTAGTG+TGG | - | chr4_3:24688586-24688605 | Msa0635540:CDS | 25.0% |
| ! | TTCAAGGATCAAATAGAAAA+GGG | - | chr4_3:24688649-24688668 | Msa0635540:intron | 25.0% |
| ! | CTTATGTTTGGAGAAATTTA+TGG | - | chr4_3:24688677-24688696 | Msa0635540:intron | 25.0% |
| ! | CATTATCAAAGAAACTATGA+AGG | - | chr4_3:24688987-24689006 | Msa0635540:intron | 25.0% |
| ! | ATTATGAATGTTAATCACGT+TGG | - | chr4_3:24689096-24689115 | Msa0635540:intron | 25.0% |
| !!! | ACGTTGGTAATTATGTTTAT+GGG | - | chr4_3:24689112-24689131 | Msa0635540:intron | 25.0% |
| !!! | GTACTATGTCTACTTTTAAT+TGG | - | chr4_3:24689289-24689308 | Msa0635540:intron | 25.0% |
| !!! | TCTACTTTTAATTGGTGATA+GGG | - | chr4_3:24689297-24689316 | Msa0635540:intron | 25.0% |
| ! | ATTCATTAGACTATAATGCT+AGG | + | chr4_3:24689378-24689397 | None:intergenic | 25.0% |
| !!! | GGTATTTCTAATGCATTTTA+TGG | - | chr4_3:24689432-24689451 | Msa0635540:intron | 25.0% |
| !! | TGATCATTAATCGAGTTTTA+TGG | - | chr4_3:24689819-24689838 | Msa0635540:intron | 25.0% |
| !!! | TGCACCATTTTTTTTGTTTT+AGG | - | chr4_3:24690746-24690765 | Msa0635540:intron | 25.0% |
| !!! | TGTTTTAGGAAAAAAATCCA+TGG | - | chr4_3:24690760-24690779 | Msa0635540:intron | 25.0% |
| TCTATTTGATCCTTGAAGAT+TGG | + | chr4_3:24688646-24688665 | None:intergenic | 30.0% | |
| CTTCAAGGATCAAATAGAAA+AGG | - | chr4_3:24688648-24688667 | Msa0635540:intron | 30.0% | |
| ! | TATAAGTTTAACTTCATGGG+AGG | - | chr4_3:24688741-24688760 | Msa0635540:intron | 30.0% |
| !! | CAAACTTGAAAAGTCGTTTT+GGG | + | chr4_3:24688800-24688819 | None:intergenic | 30.0% |
| ! | ACAAACTTGAAAAGTCGTTT+TGG | + | chr4_3:24688801-24688820 | None:intergenic | 30.0% |
| !! | TTTCAAGTTTGTTCCTTTCT+TGG | - | chr4_3:24688809-24688828 | Msa0635540:CDS | 30.0% |
| TTCAGATGTTAATGATCATG+TGG | - | chr4_3:24688954-24688973 | Msa0635540:intron | 30.0% | |
| ATCAAAGAAACTATGAAGGA+TGG | - | chr4_3:24688991-24689010 | Msa0635540:intron | 30.0% | |
| !! | CACGTTGGTAATTATGTTTA+TGG | - | chr4_3:24689111-24689130 | Msa0635540:intron | 30.0% |
| !! | CGTTGGTAATTATGTTTATG+GGG | - | chr4_3:24689113-24689132 | Msa0635540:intron | 30.0% |
| ATAGAATTCATTGTACCATG+TGG | - | chr4_3:24689148-24689167 | Msa0635540:intron | 30.0% | |
| TAGAATTCATTGTACCATGT+GGG | - | chr4_3:24689149-24689168 | Msa0635540:intron | 30.0% | |
| !! | TGCAAGCTTAAGAAGTATTA+CGG | - | chr4_3:24689249-24689268 | Msa0635540:intron | 30.0% |
| !! | GTCTACTTTTAATTGGTGAT+AGG | - | chr4_3:24689296-24689315 | Msa0635540:intron | 30.0% |
| ! | ATTTTATGGCACGAAAATGA+TGG | - | chr4_3:24689446-24689465 | Msa0635540:intron | 30.0% |
| ATGATTTACTTCAAACTCAG+AGG | - | chr4_3:24689681-24689700 | Msa0635540:intron | 30.0% | |
| TCAAAGTCATTTGACGTTTA+AGG | - | chr4_3:24689862-24689881 | Msa0635540:intron | 30.0% | |
| !! | TATATAGCTTGCTAATGATG+AGG | - | chr4_3:24690366-24690385 | Msa0635540:intron | 30.0% |
| CTCTTATAGGAAAATGTTGA+AGG | - | chr4_3:24690535-24690554 | Msa0635540:intron | 30.0% | |
| ATTTGATGCATCCACAATAA+AGG | - | chr4_3:24690906-24690925 | Msa0635540:intron | 30.0% | |
| TCTATTTGATCCTTGAAGAT+TGG | + | chr4_3:24688646-24688665 | None:intergenic | 30.0% | |
| CTTCAAGGATCAAATAGAAA+AGG | - | chr4_3:24688648-24688667 | Msa0635540:intron | 30.0% | |
| ! | TATAAGTTTAACTTCATGGG+AGG | - | chr4_3:24688741-24688760 | Msa0635540:intron | 30.0% |
| !! | CAAACTTGAAAAGTCGTTTT+GGG | + | chr4_3:24688800-24688819 | None:intergenic | 30.0% |
| ! | ACAAACTTGAAAAGTCGTTT+TGG | + | chr4_3:24688801-24688820 | None:intergenic | 30.0% |
| !! | TTTCAAGTTTGTTCCTTTCT+TGG | - | chr4_3:24688809-24688828 | Msa0635540:CDS | 30.0% |
| TTCAGATGTTAATGATCATG+TGG | - | chr4_3:24688954-24688973 | Msa0635540:intron | 30.0% | |
| ATCAAAGAAACTATGAAGGA+TGG | - | chr4_3:24688991-24689010 | Msa0635540:intron | 30.0% | |
| !! | CACGTTGGTAATTATGTTTA+TGG | - | chr4_3:24689111-24689130 | Msa0635540:intron | 30.0% |
| !! | CGTTGGTAATTATGTTTATG+GGG | - | chr4_3:24689113-24689132 | Msa0635540:intron | 30.0% |
| ATAGAATTCATTGTACCATG+TGG | - | chr4_3:24689148-24689167 | Msa0635540:intron | 30.0% | |
| TAGAATTCATTGTACCATGT+GGG | - | chr4_3:24689149-24689168 | Msa0635540:intron | 30.0% | |
| !! | TGCAAGCTTAAGAAGTATTA+CGG | - | chr4_3:24689249-24689268 | Msa0635540:intron | 30.0% |
| !! | GTCTACTTTTAATTGGTGAT+AGG | - | chr4_3:24689296-24689315 | Msa0635540:intron | 30.0% |
| ! | ATTTTATGGCACGAAAATGA+TGG | - | chr4_3:24689446-24689465 | Msa0635540:intron | 30.0% |
| ATGATTTACTTCAAACTCAG+AGG | - | chr4_3:24689681-24689700 | Msa0635540:intron | 30.0% | |
| TCAAAGTCATTTGACGTTTA+AGG | - | chr4_3:24689862-24689881 | Msa0635540:intron | 30.0% | |
| !! | TATATAGCTTGCTAATGATG+AGG | - | chr4_3:24690366-24690385 | Msa0635540:intron | 30.0% |
| CTCTTATAGGAAAATGTTGA+AGG | - | chr4_3:24690535-24690554 | Msa0635540:intron | 30.0% | |
| ATTTGATGCATCCACAATAA+AGG | - | chr4_3:24690906-24690925 | Msa0635540:intron | 30.0% | |
| AAAAGGGTTCGACTTATGTT+TGG | - | chr4_3:24688665-24688684 | Msa0635540:intron | 35.0% | |
| !! | GGGAGGAACAAATGTTTTTA+AGG | - | chr4_3:24688758-24688777 | Msa0635540:intron | 35.0% |
| TGTTCCTTTCTTGGATATCT+TGG | - | chr4_3:24688818-24688837 | Msa0635540:CDS | 35.0% | |
| ATTATGTTTATGGGGTGTGT+AGG | - | chr4_3:24689121-24689140 | Msa0635540:intron | 35.0% | |
| TTATGTTTATGGGGTGTGTA+GGG | - | chr4_3:24689122-24689141 | Msa0635540:intron | 35.0% | |
| AGCTGGAATATAACAACCAT+AGG | + | chr4_3:24689228-24689247 | None:intergenic | 35.0% | |
| ! | TTACGGTAAGCCTAATTTGT+TGG | - | chr4_3:24689266-24689285 | Msa0635540:intron | 35.0% |
| !! | TACGGTAAGCCTAATTTGTT+GGG | - | chr4_3:24689267-24689286 | Msa0635540:intron | 35.0% |
| GACATAGTACCCAACAAATT+AGG | + | chr4_3:24689279-24689298 | None:intergenic | 35.0% | |
| TCTATGTAATCAGACACTTC+AGG | + | chr4_3:24689486-24689505 | None:intergenic | 35.0% | |
| AAGTGTCTGATTACATAGAG+AGG | - | chr4_3:24689487-24689506 | Msa0635540:intron | 35.0% | |
| TTAATGCCATGAAATATGGC+AGG | - | chr4_3:24689585-24689604 | Msa0635540:intron | 35.0% | |
| ATTCATCCTGCCATATTTCA+TGG | + | chr4_3:24689594-24689613 | None:intergenic | 35.0% | |
| ATGAAATATGGCAGGATGAA+TGG | - | chr4_3:24689593-24689612 | Msa0635540:intron | 35.0% | |
| ATCTGACTAACAACTTGTGT+GGG | + | chr4_3:24689632-24689651 | None:intergenic | 35.0% | |
| AAATATAGCAAGGTTCACCT+CGG | + | chr4_3:24689735-24689754 | None:intergenic | 35.0% | |
| !! | TCGAGTTTTATGGATTGAAG+TGG | - | chr4_3:24689829-24689848 | Msa0635540:intron | 35.0% |
| !! | AGTTTTATGGATTGAAGTGG+AGG | - | chr4_3:24689832-24689851 | Msa0635540:intron | 35.0% |
| TTGAAGTGATAGACAACACA+GGG | - | chr4_3:24689898-24689917 | Msa0635540:intron | 35.0% | |
| CATGAATCTAACCTCACTTA+TGG | + | chr4_3:24689997-24690016 | None:intergenic | 35.0% | |
| ! | TCAACAAACATTTTGAGCTC+AGG | + | chr4_3:24690131-24690150 | None:intergenic | 35.0% |
| AGCGGTTTATATCACTACAT+GGG | - | chr4_3:24690252-24690271 | Msa0635540:CDS | 35.0% | |
| GTCTGTCAACCAATTCTATA+TGG | - | chr4_3:24690315-24690334 | Msa0635540:intron | 35.0% | |
| TAGCTCAGACCATATAGAAT+TGG | + | chr4_3:24690327-24690346 | None:intergenic | 35.0% | |
| !!! | TGCACCCTTTTTTCTCTTAT+AGG | - | chr4_3:24690522-24690541 | Msa0635540:intron | 35.0% |
| ! | AGGAGTTGATTCAAGTAACA+AGG | - | chr4_3:24690555-24690574 | Msa0635540:intron | 35.0% |
| TAACAAGGACGAAATTACTG+TGG | - | chr4_3:24690570-24690589 | Msa0635540:intron | 35.0% | |
| AAATGGTGCATTCCTTTAGA+TGG | + | chr4_3:24690736-24690755 | None:intergenic | 35.0% | |
| AAAAGGGTTCGACTTATGTT+TGG | - | chr4_3:24688665-24688684 | Msa0635540:intron | 35.0% | |
| !! | GGGAGGAACAAATGTTTTTA+AGG | - | chr4_3:24688758-24688777 | Msa0635540:intron | 35.0% |
| TGTTCCTTTCTTGGATATCT+TGG | - | chr4_3:24688818-24688837 | Msa0635540:CDS | 35.0% | |
| ATTATGTTTATGGGGTGTGT+AGG | - | chr4_3:24689121-24689140 | Msa0635540:intron | 35.0% | |
| TTATGTTTATGGGGTGTGTA+GGG | - | chr4_3:24689122-24689141 | Msa0635540:intron | 35.0% | |
| AGCTGGAATATAACAACCAT+AGG | + | chr4_3:24689228-24689247 | None:intergenic | 35.0% | |
| ! | TTACGGTAAGCCTAATTTGT+TGG | - | chr4_3:24689266-24689285 | Msa0635540:intron | 35.0% |
| !! | TACGGTAAGCCTAATTTGTT+GGG | - | chr4_3:24689267-24689286 | Msa0635540:intron | 35.0% |
| GACATAGTACCCAACAAATT+AGG | + | chr4_3:24689279-24689298 | None:intergenic | 35.0% | |
| TCTATGTAATCAGACACTTC+AGG | + | chr4_3:24689486-24689505 | None:intergenic | 35.0% | |
| AAGTGTCTGATTACATAGAG+AGG | - | chr4_3:24689487-24689506 | Msa0635540:intron | 35.0% | |
| TTAATGCCATGAAATATGGC+AGG | - | chr4_3:24689585-24689604 | Msa0635540:intron | 35.0% | |
| ATTCATCCTGCCATATTTCA+TGG | + | chr4_3:24689594-24689613 | None:intergenic | 35.0% | |
| ATGAAATATGGCAGGATGAA+TGG | - | chr4_3:24689593-24689612 | Msa0635540:intron | 35.0% | |
| ATCTGACTAACAACTTGTGT+GGG | + | chr4_3:24689632-24689651 | None:intergenic | 35.0% | |
| AAATATAGCAAGGTTCACCT+CGG | + | chr4_3:24689735-24689754 | None:intergenic | 35.0% | |
| !! | TCGAGTTTTATGGATTGAAG+TGG | - | chr4_3:24689829-24689848 | Msa0635540:intron | 35.0% |
| !! | AGTTTTATGGATTGAAGTGG+AGG | - | chr4_3:24689832-24689851 | Msa0635540:intron | 35.0% |
| TTGAAGTGATAGACAACACA+GGG | - | chr4_3:24689898-24689917 | Msa0635540:intron | 35.0% | |
| CATGAATCTAACCTCACTTA+TGG | + | chr4_3:24689997-24690016 | None:intergenic | 35.0% | |
| ! | TCAACAAACATTTTGAGCTC+AGG | + | chr4_3:24690131-24690150 | None:intergenic | 35.0% |
| AGCGGTTTATATCACTACAT+GGG | - | chr4_3:24690252-24690271 | Msa0635540:CDS | 35.0% | |
| GTCTGTCAACCAATTCTATA+TGG | - | chr4_3:24690315-24690334 | Msa0635540:intron | 35.0% | |
| TAGCTCAGACCATATAGAAT+TGG | + | chr4_3:24690327-24690346 | None:intergenic | 35.0% | |
| !!! | TGCACCCTTTTTTCTCTTAT+AGG | - | chr4_3:24690522-24690541 | Msa0635540:intron | 35.0% |
| ! | AGGAGTTGATTCAAGTAACA+AGG | - | chr4_3:24690555-24690574 | Msa0635540:intron | 35.0% |
| TAACAAGGACGAAATTACTG+TGG | - | chr4_3:24690570-24690589 | Msa0635540:intron | 35.0% | |
| AAATGGTGCATTCCTTTAGA+TGG | + | chr4_3:24690736-24690755 | None:intergenic | 35.0% | |
| GTATGATTCATGCAACTACC+AGG | - | chr4_3:24688608-24688627 | Msa0635540:intron | 40.0% | |
| TTTGATCCTTGAAGATTGGC+AGG | + | chr4_3:24688642-24688661 | None:intergenic | 40.0% | |
| !!! | GAGCAGTTGTTTTGAACGTA+GGG | + | chr4_3:24688716-24688735 | None:intergenic | 40.0% |
| GTAGCCAAGATATCCAAGAA+AGG | + | chr4_3:24688825-24688844 | None:intergenic | 40.0% | |
| TATGTTTATGGGGTGTGTAG+GGG | - | chr4_3:24689123-24689142 | Msa0635540:intron | 40.0% | |
| TGTGAAAATGCAGCATTGCT+TGG | - | chr4_3:24689182-24689201 | Msa0635540:intron | 40.0% | |
| ACTTCTTAAGCTTGCATAGC+TGG | + | chr4_3:24689245-24689264 | None:intergenic | 40.0% | |
| TCAGACACTTCAGGTATGTT+AGG | + | chr4_3:24689477-24689496 | None:intergenic | 40.0% | |
| CATCTGACTAACAACTTGTG+TGG | + | chr4_3:24689633-24689652 | None:intergenic | 40.0% | |
| CAAGTTGTTAGTCAGATGAC+TGG | - | chr4_3:24689635-24689654 | Msa0635540:intron | 40.0% | |
| ! | TGGTCCAACTAGAGTATCAT+TGG | - | chr4_3:24689655-24689674 | Msa0635540:intron | 40.0% |
| TCAGCCAATGATACTCTAGT+TGG | + | chr4_3:24689662-24689681 | None:intergenic | 40.0% | |
| CGAATCAATCAAACCCTCAA+TGG | + | chr4_3:24689711-24689730 | None:intergenic | 40.0% | |
| GTTGAAGTGATAGACAACAC+AGG | - | chr4_3:24689897-24689916 | Msa0635540:intron | 40.0% | |
| TAACCTCACTTATGGCATCA+AGG | + | chr4_3:24689989-24690008 | None:intergenic | 40.0% | |
| ! | ACAAACATTTTGAGCTCAGG+AGG | + | chr4_3:24690128-24690147 | None:intergenic | 40.0% |
| ATGCCAACCTCTATCGTAAT+AGG | - | chr4_3:24690183-24690202 | Msa0635540:intron | 40.0% | |
| CTCAATGATACTGTCATCCA+TGG | + | chr4_3:24690234-24690253 | None:intergenic | 40.0% | |
| TGGATGACAGTATCATTGAG+CGG | - | chr4_3:24690234-24690253 | Msa0635540:CDS | 40.0% | |
| GAGCGGTTTATATCACTACA+TGG | - | chr4_3:24690251-24690270 | Msa0635540:CDS | 40.0% | |
| GTTGGCTGATGAAAATGATG+TGG | - | chr4_3:24690420-24690439 | Msa0635540:intron | 40.0% | |
| AAAGATGGTTGTTTGTGAGC+TGG | - | chr4_3:24690630-24690649 | Msa0635540:intron | 40.0% | |
| TGGTAGTAGCAACCATCTAA+AGG | - | chr4_3:24690721-24690740 | Msa0635540:intron | 40.0% | |
| TATCAGTGGAATTAGCTCCA+TGG | + | chr4_3:24690780-24690799 | None:intergenic | 40.0% | |
| TGGAGCTAATTCCACTGATA+AGG | - | chr4_3:24690780-24690799 | Msa0635540:intron | 40.0% | |
| GCTAATTCCACTGATAAGGA+CGG | - | chr4_3:24690784-24690803 | Msa0635540:intron | 40.0% | |
| TGCTGCTATTGTGGAATCAT+TGG | - | chr4_3:24690864-24690883 | Msa0635540:intron | 40.0% | |
| CATCAAATCCATCAACAGAC+AGG | + | chr4_3:24690894-24690913 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGGCTCCTTTATTG+TGG | + | chr4_3:24690920-24690939 | None:intergenic | 40.0% |
| !! | CCAAAACCAAGCATCGTTTT+GGG | - | chr4_3:24690931-24690950 | Msa0635540:intron | 40.0% |
| !! | CAAAACCAAGCATCGTTTTG+GGG | - | chr4_3:24690932-24690951 | Msa0635540:intron | 40.0% |
| GTATGATTCATGCAACTACC+AGG | - | chr4_3:24688608-24688627 | Msa0635540:intron | 40.0% | |
| TTTGATCCTTGAAGATTGGC+AGG | + | chr4_3:24688642-24688661 | None:intergenic | 40.0% | |
| !!! | GAGCAGTTGTTTTGAACGTA+GGG | + | chr4_3:24688716-24688735 | None:intergenic | 40.0% |
| GTAGCCAAGATATCCAAGAA+AGG | + | chr4_3:24688825-24688844 | None:intergenic | 40.0% | |
| TATGTTTATGGGGTGTGTAG+GGG | - | chr4_3:24689123-24689142 | Msa0635540:intron | 40.0% | |
| TGTGAAAATGCAGCATTGCT+TGG | - | chr4_3:24689182-24689201 | Msa0635540:intron | 40.0% | |
| ACTTCTTAAGCTTGCATAGC+TGG | + | chr4_3:24689245-24689264 | None:intergenic | 40.0% | |
| TCAGACACTTCAGGTATGTT+AGG | + | chr4_3:24689477-24689496 | None:intergenic | 40.0% | |
| CATCTGACTAACAACTTGTG+TGG | + | chr4_3:24689633-24689652 | None:intergenic | 40.0% | |
| CAAGTTGTTAGTCAGATGAC+TGG | - | chr4_3:24689635-24689654 | Msa0635540:intron | 40.0% | |
| ! | TGGTCCAACTAGAGTATCAT+TGG | - | chr4_3:24689655-24689674 | Msa0635540:intron | 40.0% |
| TCAGCCAATGATACTCTAGT+TGG | + | chr4_3:24689662-24689681 | None:intergenic | 40.0% | |
| CGAATCAATCAAACCCTCAA+TGG | + | chr4_3:24689711-24689730 | None:intergenic | 40.0% | |
| GTTGAAGTGATAGACAACAC+AGG | - | chr4_3:24689897-24689916 | Msa0635540:intron | 40.0% | |
| TAACCTCACTTATGGCATCA+AGG | + | chr4_3:24689989-24690008 | None:intergenic | 40.0% | |
| ! | ACAAACATTTTGAGCTCAGG+AGG | + | chr4_3:24690128-24690147 | None:intergenic | 40.0% |
| ATGCCAACCTCTATCGTAAT+AGG | - | chr4_3:24690183-24690202 | Msa0635540:intron | 40.0% | |
| CTCAATGATACTGTCATCCA+TGG | + | chr4_3:24690234-24690253 | None:intergenic | 40.0% | |
| TGGATGACAGTATCATTGAG+CGG | - | chr4_3:24690234-24690253 | Msa0635540:CDS | 40.0% | |
| GAGCGGTTTATATCACTACA+TGG | - | chr4_3:24690251-24690270 | Msa0635540:CDS | 40.0% | |
| GTTGGCTGATGAAAATGATG+TGG | - | chr4_3:24690420-24690439 | Msa0635540:intron | 40.0% | |
| AAAGATGGTTGTTTGTGAGC+TGG | - | chr4_3:24690630-24690649 | Msa0635540:intron | 40.0% | |
| TGGTAGTAGCAACCATCTAA+AGG | - | chr4_3:24690721-24690740 | Msa0635540:intron | 40.0% | |
| TATCAGTGGAATTAGCTCCA+TGG | + | chr4_3:24690780-24690799 | None:intergenic | 40.0% | |
| TGGAGCTAATTCCACTGATA+AGG | - | chr4_3:24690780-24690799 | Msa0635540:intron | 40.0% | |
| GCTAATTCCACTGATAAGGA+CGG | - | chr4_3:24690784-24690803 | Msa0635540:intron | 40.0% | |
| TGCTGCTATTGTGGAATCAT+TGG | - | chr4_3:24690864-24690883 | Msa0635540:intron | 40.0% | |
| CATCAAATCCATCAACAGAC+AGG | + | chr4_3:24690894-24690913 | None:intergenic | 40.0% | |
| !!! | TGGTTTTGGCTCCTTTATTG+TGG | + | chr4_3:24690920-24690939 | None:intergenic | 40.0% |
| !! | CCAAAACCAAGCATCGTTTT+GGG | - | chr4_3:24690931-24690950 | Msa0635540:intron | 40.0% |
| !! | CAAAACCAAGCATCGTTTTG+GGG | - | chr4_3:24690932-24690951 | Msa0635540:intron | 40.0% |
| AAACCTCCTGCCAATCTTCA+AGG | - | chr4_3:24688633-24688652 | Msa0635540:intron | 45.0% | |
| !!! | GGAGCAGTTGTTTTGAACGT+AGG | + | chr4_3:24688717-24688736 | None:intergenic | 45.0% |
| GAAGGATGGCAAGAGTAACA+AGG | - | chr4_3:24689005-24689024 | Msa0635540:intron | 45.0% | |
| TGGCAAGAGTAACAAGGTCT+TGG | - | chr4_3:24689011-24689030 | Msa0635540:intron | 45.0% | |
| CAAGGTCTTGGATGCGAATT+TGG | - | chr4_3:24689023-24689042 | Msa0635540:intron | 45.0% | |
| CACAGCATAATCATCCCACA+TGG | + | chr4_3:24689166-24689185 | None:intergenic | 45.0% | |
| AACTCAGAGGATGACCATTG+AGG | - | chr4_3:24689694-24689713 | Msa0635540:intron | 45.0% | |
| ACTCAGAGGATGACCATTGA+GGG | - | chr4_3:24689695-24689714 | Msa0635540:intron | 45.0% | |
| CTCACTTATGGCATCAAGGA+AGG | + | chr4_3:24689985-24690004 | None:intergenic | 45.0% | |
| CTTCCTTGATGCCATAAGTG+AGG | - | chr4_3:24689983-24690002 | Msa0635540:CDS | 45.0% | |
| TGTTGTGACTCCAACAAGCA+AGG | - | chr4_3:24690600-24690619 | Msa0635540:intron | 45.0% | |
| ! | ACTCCAACAAGCAAGGCATT+GGG | - | chr4_3:24690607-24690626 | Msa0635540:intron | 45.0% |
| TTTCCCAATGCCTTGCTTGT+TGG | + | chr4_3:24690613-24690632 | None:intergenic | 45.0% | |
| !! | AAGCAAGGCATTGGGAAAGA+TGG | - | chr4_3:24690615-24690634 | Msa0635540:intron | 45.0% |
| GCTGGCTGATCAAAATTCAG+CGG | - | chr4_3:24690648-24690667 | Msa0635540:intron | 45.0% | |
| !! | TTCCCCAAAGGTTTGCTAGT+CGG | + | chr4_3:24690838-24690857 | None:intergenic | 45.0% |
| TTGGATGACCTGTCTGTTGA+TGG | - | chr4_3:24690883-24690902 | Msa0635540:intron | 45.0% | |
| !! | GCCAAAACCAAGCATCGTTT+TGG | - | chr4_3:24690930-24690949 | Msa0635540:intron | 45.0% |
| ! | CCCAAAACGATGCTTGGTTT+TGG | + | chr4_3:24690934-24690953 | None:intergenic | 45.0% |
| AAACCTCCTGCCAATCTTCA+AGG | - | chr4_3:24688633-24688652 | Msa0635540:intron | 45.0% | |
| !!! | GGAGCAGTTGTTTTGAACGT+AGG | + | chr4_3:24688717-24688736 | None:intergenic | 45.0% |
| GAAGGATGGCAAGAGTAACA+AGG | - | chr4_3:24689005-24689024 | Msa0635540:intron | 45.0% | |
| TGGCAAGAGTAACAAGGTCT+TGG | - | chr4_3:24689011-24689030 | Msa0635540:intron | 45.0% | |
| CAAGGTCTTGGATGCGAATT+TGG | - | chr4_3:24689023-24689042 | Msa0635540:intron | 45.0% | |
| CACAGCATAATCATCCCACA+TGG | + | chr4_3:24689166-24689185 | None:intergenic | 45.0% | |
| AACTCAGAGGATGACCATTG+AGG | - | chr4_3:24689694-24689713 | Msa0635540:intron | 45.0% | |
| ACTCAGAGGATGACCATTGA+GGG | - | chr4_3:24689695-24689714 | Msa0635540:intron | 45.0% | |
| CTCACTTATGGCATCAAGGA+AGG | + | chr4_3:24689985-24690004 | None:intergenic | 45.0% | |
| CTTCCTTGATGCCATAAGTG+AGG | - | chr4_3:24689983-24690002 | Msa0635540:CDS | 45.0% | |
| TGTTGTGACTCCAACAAGCA+AGG | - | chr4_3:24690600-24690619 | Msa0635540:intron | 45.0% | |
| ! | ACTCCAACAAGCAAGGCATT+GGG | - | chr4_3:24690607-24690626 | Msa0635540:intron | 45.0% |
| TTTCCCAATGCCTTGCTTGT+TGG | + | chr4_3:24690613-24690632 | None:intergenic | 45.0% | |
| !! | AAGCAAGGCATTGGGAAAGA+TGG | - | chr4_3:24690615-24690634 | Msa0635540:intron | 45.0% |
| GCTGGCTGATCAAAATTCAG+CGG | - | chr4_3:24690648-24690667 | Msa0635540:intron | 45.0% | |
| !! | TTCCCCAAAGGTTTGCTAGT+CGG | + | chr4_3:24690838-24690857 | None:intergenic | 45.0% |
| TTGGATGACCTGTCTGTTGA+TGG | - | chr4_3:24690883-24690902 | Msa0635540:intron | 45.0% | |
| !! | GCCAAAACCAAGCATCGTTT+TGG | - | chr4_3:24690930-24690949 | Msa0635540:intron | 45.0% |
| ! | CCCAAAACGATGCTTGGTTT+TGG | + | chr4_3:24690934-24690953 | None:intergenic | 45.0% |
| ! | GATTGGCAGGAGGTTTTTCC+TGG | + | chr4_3:24688629-24688648 | None:intergenic | 50.0% |
| GATCCTTGAAGATTGGCAGG+AGG | + | chr4_3:24688639-24688658 | None:intergenic | 50.0% | |
| GGATATCTTGGCTACTCCCA+AGG | - | chr4_3:24688830-24688849 | Msa0635540:CDS | 50.0% | |
| TATCTTGGCTACTCCCAAGG+AGG | - | chr4_3:24688833-24688852 | Msa0635540:CDS | 50.0% | |
| TCCCAAGGAGGATCATTTGC+TGG | - | chr4_3:24688845-24688864 | Msa0635540:CDS | 50.0% | |
| CCCAGCAAATGATCCTCCTT+GGG | + | chr4_3:24688849-24688868 | None:intergenic | 50.0% | |
| CCCAAGGAGGATCATTTGCT+GGG | - | chr4_3:24688846-24688865 | Msa0635540:CDS | 50.0% | |
| ACCCAGCAAATGATCCTCCT+TGG | + | chr4_3:24688850-24688869 | None:intergenic | 50.0% | |
| GCATGACTCATCGCTTCCTA+TGG | - | chr4_3:24689209-24689228 | Msa0635540:intron | 50.0% | |
| !! | GGGTTTGATTGATTCGTCCG+AGG | - | chr4_3:24689715-24689734 | Msa0635540:intron | 50.0% |
| TCGTGTTGTGTCTCAAGCTG+TGG | - | chr4_3:24689944-24689963 | Msa0635540:intron | 50.0% | |
| CGTGTTGTGTCTCAAGCTGT+GGG | - | chr4_3:24689945-24689964 | Msa0635540:intron | 50.0% | |
| TGTCTCAAGCTGTGGGAAGA+TGG | - | chr4_3:24689952-24689971 | Msa0635540:CDS | 50.0% | |
| GCGCCTATTACGATAGAGGT+TGG | + | chr4_3:24690189-24690208 | None:intergenic | 50.0% | |
| AGCTGCGCCTATTACGATAG+AGG | + | chr4_3:24690193-24690212 | None:intergenic | 50.0% | |
| CGTCGAGACTGTTTGTGAGT+TGG | - | chr4_3:24690402-24690421 | Msa0635540:intron | 50.0% | |
| GACTCCAACAAGCAAGGCAT+TGG | - | chr4_3:24690606-24690625 | Msa0635540:intron | 50.0% | |
| AGTGACACCGTCCTTATCAG+TGG | + | chr4_3:24690794-24690813 | None:intergenic | 50.0% | |
| ACCCCGACTAGCAAACCTTT+GGG | - | chr4_3:24690832-24690851 | Msa0635540:intron | 50.0% | |
| !! | TCCCCAAAGGTTTGCTAGTC+GGG | + | chr4_3:24690837-24690856 | None:intergenic | 50.0% |
| GAAGAGAGCTGCTGCTATTG+TGG | - | chr4_3:24690855-24690874 | Msa0635540:intron | 50.0% | |
| ! | GATTGGCAGGAGGTTTTTCC+TGG | + | chr4_3:24688629-24688648 | None:intergenic | 50.0% |
| GATCCTTGAAGATTGGCAGG+AGG | + | chr4_3:24688639-24688658 | None:intergenic | 50.0% | |
| GGATATCTTGGCTACTCCCA+AGG | - | chr4_3:24688830-24688849 | Msa0635540:CDS | 50.0% | |
| TATCTTGGCTACTCCCAAGG+AGG | - | chr4_3:24688833-24688852 | Msa0635540:CDS | 50.0% | |
| TCCCAAGGAGGATCATTTGC+TGG | - | chr4_3:24688845-24688864 | Msa0635540:CDS | 50.0% | |
| CCCAGCAAATGATCCTCCTT+GGG | + | chr4_3:24688849-24688868 | None:intergenic | 50.0% | |
| CCCAAGGAGGATCATTTGCT+GGG | - | chr4_3:24688846-24688865 | Msa0635540:CDS | 50.0% | |
| ACCCAGCAAATGATCCTCCT+TGG | + | chr4_3:24688850-24688869 | None:intergenic | 50.0% | |
| GCATGACTCATCGCTTCCTA+TGG | - | chr4_3:24689209-24689228 | Msa0635540:intron | 50.0% | |
| !! | GGGTTTGATTGATTCGTCCG+AGG | - | chr4_3:24689715-24689734 | Msa0635540:intron | 50.0% |
| TCGTGTTGTGTCTCAAGCTG+TGG | - | chr4_3:24689944-24689963 | Msa0635540:intron | 50.0% | |
| CGTGTTGTGTCTCAAGCTGT+GGG | - | chr4_3:24689945-24689964 | Msa0635540:intron | 50.0% | |
| TGTCTCAAGCTGTGGGAAGA+TGG | - | chr4_3:24689952-24689971 | Msa0635540:CDS | 50.0% | |
| GCGCCTATTACGATAGAGGT+TGG | + | chr4_3:24690189-24690208 | None:intergenic | 50.0% | |
| AGCTGCGCCTATTACGATAG+AGG | + | chr4_3:24690193-24690212 | None:intergenic | 50.0% | |
| CGTCGAGACTGTTTGTGAGT+TGG | - | chr4_3:24690402-24690421 | Msa0635540:intron | 50.0% | |
| GACTCCAACAAGCAAGGCAT+TGG | - | chr4_3:24690606-24690625 | Msa0635540:intron | 50.0% | |
| AGTGACACCGTCCTTATCAG+TGG | + | chr4_3:24690794-24690813 | None:intergenic | 50.0% | |
| ACCCCGACTAGCAAACCTTT+GGG | - | chr4_3:24690832-24690851 | Msa0635540:intron | 50.0% | |
| !! | TCCCCAAAGGTTTGCTAGTC+GGG | + | chr4_3:24690837-24690856 | None:intergenic | 50.0% |
| GAAGAGAGCTGCTGCTATTG+TGG | - | chr4_3:24690855-24690874 | Msa0635540:intron | 50.0% | |
| GACCCCGACTAGCAAACCTT+TGG | - | chr4_3:24690831-24690850 | Msa0635540:intron | 55.0% | |
| !! | CCCCAAAGGTTTGCTAGTCG+GGG | + | chr4_3:24690836-24690855 | None:intergenic | 55.0% |
| CCCCGACTAGCAAACCTTTG+GGG | - | chr4_3:24690833-24690852 | Msa0635540:intron | 55.0% | |
| CGGTTCCCCAAAACGATGCT+TGG | + | chr4_3:24690940-24690959 | None:intergenic | 55.0% | |
| GACCCCGACTAGCAAACCTT+TGG | - | chr4_3:24690831-24690850 | Msa0635540:intron | 55.0% | |
| !! | CCCCAAAGGTTTGCTAGTCG+GGG | + | chr4_3:24690836-24690855 | None:intergenic | 55.0% |
| CCCCGACTAGCAAACCTTTG+GGG | - | chr4_3:24690833-24690852 | Msa0635540:intron | 55.0% | |
| CGGTTCCCCAAAACGATGCT+TGG | + | chr4_3:24690940-24690959 | None:intergenic | 55.0% | |
| GCAGCAGCTCTCTTCCCCAA+AGG | + | chr4_3:24690850-24690869 | None:intergenic | 60.0% | |
| GCAGCAGCTCTCTTCCCCAA+AGG | + | chr4_3:24690850-24690869 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 24688513 | 24690963 | 24688513 | ID=Msa0635540;Name=Msa0635540 |
| chr4_3 | mRNA | 24688513 | 24690963 | 24688513 | ID=Msa0635540-mRNA-1;Parent=Msa0635540;Name=Msa0635540-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0|0.83|0.8|0.83|6|0|177 |
| chr4_3 | exon | 24690956 | 24690963 | 24690956 | ID=Msa0635540-mRNA-1:exon:6255;Parent=Msa0635540-mRNA-1 |
| chr4_3 | exon | 24690206 | 24690333 | 24690206 | ID=Msa0635540-mRNA-1:exon:6254;Parent=Msa0635540-mRNA-1 |
| chr4_3 | exon | 24689946 | 24690043 | 24689946 | ID=Msa0635540-mRNA-1:exon:6253;Parent=Msa0635540-mRNA-1 |
| chr4_3 | exon | 24689035 | 24689103 | 24689035 | ID=Msa0635540-mRNA-1:exon:6252;Parent=Msa0635540-mRNA-1 |
| chr4_3 | exon | 24688807 | 24688932 | 24688807 | ID=Msa0635540-mRNA-1:exon:6251;Parent=Msa0635540-mRNA-1 |
| chr4_3 | exon | 24688513 | 24688617 | 24688513 | ID=Msa0635540-mRNA-1:exon:6250;Parent=Msa0635540-mRNA-1 |
| chr4_3 | CDS | 24690956 | 24690963 | 24690956 | ID=Msa0635540-mRNA-1:cds;Parent=Msa0635540-mRNA-1 |
| chr4_3 | CDS | 24690206 | 24690333 | 24690206 | ID=Msa0635540-mRNA-1:cds;Parent=Msa0635540-mRNA-1 |
| chr4_3 | CDS | 24689946 | 24690043 | 24689946 | ID=Msa0635540-mRNA-1:cds;Parent=Msa0635540-mRNA-1 |
| chr4_3 | CDS | 24689035 | 24689103 | 24689035 | ID=Msa0635540-mRNA-1:cds;Parent=Msa0635540-mRNA-1 |
| chr4_3 | CDS | 24688807 | 24688932 | 24688807 | ID=Msa0635540-mRNA-1:cds;Parent=Msa0635540-mRNA-1 |
| chr4_3 | CDS | 24688513 | 24688617 | 24688513 | ID=Msa0635540-mRNA-1:cds;Parent=Msa0635540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
