AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1451570


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451570 MtrunA17_Chr3g0118831 87.647 170 10 1 1 159 141 310 2.92e-106 311
Msa1451570 MtrunA17_Chr3g0118841 85.629 167 13 1 1 156 142 308 1.29e-100 298
Msa1451570 MtrunA17_Chr3g0118851 84.706 170 14 2 1 159 141 309 1.43e-98 292
Msa1451570 MtrunA17_Chr3g0118891 82.635 167 18 1 1 156 141 307 3.22e-98 290
Msa1451570 MtrunA17_Chr3g0118881 82.036 167 19 1 1 156 141 307 1.43e-95 285
Msa1451570 MtrunA17_Chr3g0118861 78.212 179 16 3 1 156 139 317 2.52e-92 276
Msa1451570 MtrunA17_Chr3g0090331 61.272 173 55 2 1 161 137 309 8.22e-68 213
Msa1451570 MtrunA17_Chr1g0153881 60.241 166 54 2 1 154 153 318 1.25e-63 202
Msa1451570 MtrunA17_Chr1g0153941 59.880 167 55 2 1 155 141 307 2.37e-63 202
Msa1451570 MtrunA17_Chr4g0020241 58.788 165 56 2 1 154 136 299 1.43e-60 194
Msa1451570 MtrunA17_Chr1g0199991 54.839 155 59 1 2 145 99 253 2.89e-54 177
Msa1451570 MtrunA17_Chr1g0199971 50.898 167 70 2 2 156 99 265 6.13e-52 171
Msa1451570 MtrunA17_Chr2g0318911 50.955 157 66 1 2 147 106 262 1.21e-49 166
Msa1451570 MtrunA17_Chr2g0309511 50.909 165 69 2 2 154 105 269 1.58e-48 162
Msa1451570 MtrunA17_Chr2g0309521 49.697 165 71 2 2 154 105 269 5.85e-48 161
Msa1451570 MtrunA17_Chr2g0309541 49.701 167 70 3 2 154 104 270 6.00e-48 161
Msa1451570 MtrunA17_Chr4g0068841 48.171 164 73 2 3 154 104 267 7.57e-46 156
Msa1451570 MtrunA17_Chr7g0219051 49.390 164 71 2 2 154 99 261 4.24e-45 154
Msa1451570 MtrunA17_Chr4g0038311 53.125 160 58 4 2 146 98 255 5.36e-45 153
Msa1451570 MtrunA17_Chr1g0153931 62.185 119 33 2 1 107 139 257 2.97e-44 147
Msa1451570 MtrunA17_Chr4g0068861 45.294 170 82 2 3 161 150 319 7.80e-44 150
Msa1451570 MtrunA17_Chr2g0281641 48.408 157 69 2 2 147 19 174 2.00e-42 145
Msa1451570 MtrunA17_Chr4g0047861 49.390 164 63 4 2 149 117 276 7.60e-42 145
Msa1451570 MtrunA17_Chr2g0281621 48.387 155 68 2 2 145 99 252 1.28e-40 142
Msa1451570 MtrunA17_Chr5g0431301 44.693 179 78 4 3 161 94 271 4.91e-40 140
Msa1451570 MtrunA17_Chr3g0126031 43.636 165 79 3 3 154 93 256 2.08e-38 135
Msa1451570 MtrunA17_Chr3g0126051 42.169 166 82 3 3 154 98 263 2.55e-37 133
Msa1451570 MtrunA17_Chr2g0304931 43.529 170 73 3 3 154 103 267 3.82e-37 132
Msa1451570 MtrunA17_Chr7g0221551 40.449 178 84 4 3 162 95 268 6.89e-37 132
Msa1451570 MtrunA17_Chr3g0131731 40.936 171 78 5 3 154 96 262 7.13e-36 129
Msa1451570 MtrunA17_Chr3g0094811 43.871 155 69 3 3 146 95 242 5.41e-34 124
Msa1451570 MtrunA17_Chr8g0385871 38.547 179 86 5 3 162 98 271 1.03e-33 123
Msa1451570 MtrunA17_Chr1g0165811 41.060 151 72 3 3 143 95 238 1.90e-33 119
Msa1451570 MtrunA17_Chr1g0171411 38.037 163 88 3 3 154 133 293 3.70e-25 100
Msa1451570 MtrunA17_Chr7g0249431 37.158 183 91 7 3 162 94 275 7.60e-25 99.4
Msa1451570 MtrunA17_Chr2g0327381 36.242 149 83 2 3 139 143 291 3.41e-21 89.4
Msa1451570 MtrunA17_Chr4g0028271 36.184 152 80 4 3 141 147 294 5.52e-21 88.6
Msa1451570 MtrunA17_Chr2g0327401 36.424 151 83 3 3 141 149 298 9.91e-21 87.8
Msa1451570 MtrunA17_Chr1g0199171 33.742 163 95 3 3 154 139 299 1.17e-20 87.4
Msa1451570 MtrunA17_Chr8g0338461 33.544 158 88 3 3 144 95 251 1.54e-20 87.4
Msa1451570 MtrunA17_Chr4g0028241 43.697 119 54 3 3 110 139 255 4.05e-20 85.9
Msa1451570 MtrunA17_Chr4g0028281 34.667 150 85 3 3 141 145 292 3.81e-19 83.2
Msa1451570 MtrunA17_Chr7g0234051 34.395 157 86 4 3 143 94 249 1.02e-18 82.0
Msa1451570 MtrunA17_Chr2g0327371 34.320 169 85 4 3 156 132 289 2.71e-18 80.9
Msa1451570 MtrunA17_Chr4g0028261 33.553 152 84 4 3 141 168 315 3.11e-18 80.9
Msa1451570 MtrunA17_Chr7g0234041 37.984 129 57 3 3 115 91 212 2.15e-15 72.4
Msa1451570 MtrunA17_Chr5g0447441 32.886 149 85 5 3 138 94 240 3.89e-15 71.6
Msa1451570 MtrunA17_Chr4g0044051 34.028 144 70 6 3 132 98 230 1.21e-14 70.5
Msa1451570 MtrunA17_Chr7g0229641 45.614 57 21 1 57 113 45 91 7.83e-12 58.5
Msa1451570 MtrunA17_Chr2g0285371 26.374 182 109 6 1 161 96 273 5.42e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1451570 AT3G63470.1 55.488 164 58 2 1 153 144 303 1.40e-57 187
Msa1451570 AT2G35780.1 53.448 174 65 4 2 163 96 265 6.28e-54 177
Msa1451570 AT4G30610.1 53.614 166 66 1 2 156 97 262 8.71e-54 177
Msa1451570 AT3G07990.1 51.205 166 69 2 2 155 100 265 1.26e-53 176
Msa1451570 AT2G35770.1 54.902 153 58 1 2 143 102 254 1.37e-52 173
Msa1451570 AT2G24000.1 51.220 164 69 1 2 154 95 258 2.50e-51 170
Msa1451570 AT2G24010.4 51.515 165 68 2 2 154 80 244 4.31e-51 167
Msa1451570 AT4G30810.1 50.955 157 66 1 2 147 102 258 5.39e-51 169
Msa1451570 AT2G24010.2 51.515 165 68 2 2 154 109 273 3.52e-50 167
Msa1451570 AT2G24010.1 51.515 165 68 2 2 154 94 258 3.80e-50 167
Msa1451570 AT3G52020.1 52.727 165 65 2 2 155 142 304 5.91e-50 167
Msa1451570 AT5G23210.4 51.205 166 68 3 2 154 19 184 1.93e-49 163
Msa1451570 AT5G23210.2 51.205 166 68 3 2 154 19 184 6.23e-49 162
Msa1451570 AT5G23210.5 51.205 166 68 3 2 154 20 185 7.55e-49 162
Msa1451570 AT5G23210.3 51.205 166 68 3 2 154 115 280 1.54e-48 163
Msa1451570 AT5G23210.1 51.205 166 68 3 2 154 115 280 3.99e-48 162
Msa1451570 AT2G05850.1 54.088 159 56 4 2 146 128 283 9.15e-48 161
Msa1451570 AT3G52000.1 52.288 153 58 3 2 143 127 275 3.00e-46 157
Msa1451570 AT5G08260.1 47.059 170 76 3 2 157 104 273 5.39e-46 156
Msa1451570 AT3G02110.1 48.780 164 72 2 2 154 101 263 2.52e-45 154
Msa1451570 AT2G24010.3 44.737 190 68 3 2 154 80 269 5.12e-45 154
Msa1451570 AT1G11080.1 47.853 163 70 2 2 149 114 276 2.74e-44 152
Msa1451570 AT1G11080.2 47.853 163 70 2 2 149 114 276 3.42e-44 152
Msa1451570 AT1G43780.1 44.444 180 78 5 3 161 102 280 2.76e-43 149
Msa1451570 AT3G17180.2 45.732 164 77 2 3 154 105 268 4.10e-43 148
Msa1451570 AT3G17180.1 45.732 164 77 2 3 154 105 268 7.81e-43 148
Msa1451570 AT1G61130.1 47.500 160 71 2 2 148 95 254 2.22e-42 147
Msa1451570 AT3G52010.1 46.452 155 66 3 3 143 129 280 4.53e-41 144
Msa1451570 AT4G15100.1 45.679 162 75 2 2 150 108 269 1.15e-40 142
Msa1451570 AT2G12480.1 44.242 165 79 3 3 155 96 259 2.90e-40 140
Msa1451570 AT2G12480.2 44.242 165 79 3 3 155 96 259 2.92e-40 140
Msa1451570 AT2G12480.4 44.242 165 79 3 3 155 96 259 3.19e-40 140
Msa1451570 AT2G12480.3 44.242 165 79 3 3 155 96 259 4.48e-40 140
Msa1451570 AT2G33530.1 44.134 179 78 5 3 163 98 272 1.42e-39 139
Msa1451570 AT5G42240.1 43.195 169 78 3 3 154 97 264 3.06e-39 138
Msa1451570 AT1G28110.1 40.449 178 84 4 3 162 96 269 6.70e-37 132
Msa1451570 AT1G28110.2 40.449 178 84 4 3 162 96 269 6.70e-37 132
Msa1451570 AT5G42230.1 40.828 169 82 3 3 154 93 260 3.12e-36 130
Msa1451570 AT5G42230.2 40.828 169 82 3 3 154 93 260 3.12e-36 130
Msa1451570 AT3G56540.1 61.957 92 24 1 1 81 141 232 8.13e-34 120
Msa1451570 AT4G12910.2 38.217 157 80 3 3 143 99 254 4.71e-25 100
Msa1451570 AT4G12910.1 38.217 157 80 3 3 143 99 254 6.83e-25 100
Msa1451570 AT3G25420.1 34.078 179 98 4 3 162 94 271 3.19e-24 98.2
Msa1451570 AT3G10410.1 38.158 152 77 4 3 141 148 295 9.54e-23 94.0
Msa1451570 AT5G22980.1 35.366 164 90 5 3 154 147 306 3.19e-22 92.4
Msa1451570 AT3G45010.1 35.366 164 90 4 3 152 150 311 4.37e-21 89.4
Msa1451570 AT1G15000.1 36.429 140 67 4 3 131 88 216 1.41e-19 84.7
Msa1451570 AT2G22990.5 32.867 143 92 2 10 150 99 239 1.44e-19 84.7
Msa1451570 AT2G22990.3 33.117 154 86 4 10 150 99 248 6.39e-18 80.1
Msa1451570 AT2G22990.1 33.117 154 86 4 10 150 99 248 7.33e-18 79.7
Msa1451570 AT2G22990.4 33.117 154 86 4 10 150 99 248 7.68e-18 79.7
Msa1451570 AT2G24000.2 32.680 153 51 1 2 154 95 195 4.36e-17 77.4
Msa1451570 AT2G22990.6 36.220 127 75 3 26 150 12 134 8.13e-17 76.3
Msa1451570 AT2G22990.2 36.220 127 75 3 26 150 12 134 8.38e-17 76.3
Msa1451570 AT2G23000.1 33.987 153 86 4 10 150 101 250 7.63e-16 74.3
Msa1451570 AT2G23000.2 33.987 153 86 4 10 150 101 250 7.63e-16 74.3
Msa1451570 AT1G33540.2 31.646 158 91 3 3 144 50 206 3.83e-15 72.0
Msa1451570 AT1G33540.1 31.646 158 91 3 3 144 93 249 4.83e-15 72.0
Msa1451570 AT1G73290.2 30.345 145 89 2 10 143 108 251 1.05e-14 70.5
Msa1451570 AT3G10450.3 29.878 164 98 3 3 150 50 212 1.09e-14 70.9
Msa1451570 AT1G73300.1 34.400 125 81 1 26 150 136 259 1.11e-14 70.9
Msa1451570 AT1G73300.2 34.400 125 81 1 26 150 136 259 1.11e-14 70.9
Msa1451570 AT3G10450.2 32.800 125 83 1 26 150 89 212 1.19e-14 70.5
Msa1451570 AT3G10450.4 29.878 164 98 3 3 150 93 255 1.20e-14 70.9
Msa1451570 AT3G10450.1 29.878 164 98 3 3 150 93 255 1.27e-14 70.5
Msa1451570 AT2G23010.2 30.573 157 91 3 3 143 89 243 1.88e-14 70.1
Msa1451570 AT2G23010.1 30.573 157 91 3 3 143 89 243 2.01e-14 70.1
Msa1451570 AT5G36180.4 34.400 125 81 1 26 150 34 157 2.03e-14 69.7
Msa1451570 AT5G36180.5 34.400 125 81 1 26 150 34 157 2.47e-14 69.3
Msa1451570 AT5G36180.3 34.400 125 81 1 26 150 34 157 2.47e-14 69.3
Msa1451570 AT5G36180.2 34.400 125 81 1 26 150 34 157 2.84e-14 69.3
Msa1451570 AT5G36180.1 34.400 125 81 1 26 150 136 259 2.86e-14 69.7
Msa1451570 AT5G22960.1 47.368 76 39 1 28 103 100 174 3.15e-14 67.4
Msa1451570 AT1G73290.3 29.936 157 93 3 3 143 96 251 4.78e-14 68.9
Msa1451570 AT1G73290.1 29.936 157 93 3 3 143 96 251 5.35e-14 68.9
Msa1451570 AT3G12203.3 31.933 119 80 1 26 144 112 229 1.43e-13 67.8
Msa1451570 AT3G12203.2 31.933 119 80 1 26 144 75 192 1.58e-13 67.4
Msa1451570 AT2G22970.2 32.877 146 83 4 10 143 101 243 1.79e-13 67.0
Msa1451570 AT3G12203.1 31.933 119 80 1 26 144 133 250 1.93e-13 67.4
Msa1451570 AT2G22970.4 32.877 146 83 4 10 143 101 243 3.16e-13 66.6
Msa1451570 AT2G22970.1 32.877 146 83 4 10 143 101 243 3.23e-13 66.6
Msa1451570 AT2G22970.3 32.877 146 83 4 10 143 101 243 3.26e-13 66.6
Msa1451570 AT1G73270.2 32.800 125 83 1 26 150 136 259 4.06e-13 66.2
Msa1451570 AT1G73280.2 30.921 152 93 2 10 150 109 259 4.24e-13 66.2
Msa1451570 AT1G73270.1 32.800 125 83 1 26 150 136 259 4.30e-13 66.2
Msa1451570 AT1G73280.3 33.600 125 82 1 26 150 9 132 5.44e-13 65.5
Msa1451570 AT1G73280.4 33.600 125 82 1 26 150 34 157 6.15e-13 65.5
Msa1451570 AT1G73280.1 30.921 152 93 2 10 150 109 259 6.45e-13 65.9
Msa1451570 AT1G73310.2 32.800 125 83 1 26 150 136 259 6.88e-13 65.9
Msa1451570 AT1G73310.1 33.051 118 78 1 26 143 136 252 6.96e-13 65.9
Msa1451570 AT1G73310.3 33.051 118 78 1 26 143 34 150 7.31e-13 65.5
Msa1451570 AT2G22920.4 30.345 145 89 2 10 143 101 244 1.38e-12 64.3
Msa1451570 AT2G22980.4 32.414 145 81 3 10 143 102 240 1.84e-12 64.3
Msa1451570 AT2G22980.3 35.593 118 70 2 26 143 131 242 2.08e-12 64.3
Msa1451570 AT2G22980.2 32.414 145 81 3 10 143 102 240 2.29e-12 64.3
Msa1451570 AT2G22980.1 32.414 145 81 3 10 143 102 240 2.39e-12 63.9
Msa1451570 AT2G22920.1 30.345 145 89 2 10 143 101 244 2.69e-12 63.9
Msa1451570 AT2G22980.5 35.593 118 70 2 26 143 12 123 2.72e-12 63.5
Msa1451570 AT2G22920.2 30.345 145 89 2 10 143 101 244 3.05e-12 63.9
Msa1451570 AT3G12230.1 31.973 147 84 4 10 143 103 246 4.56e-12 63.2
Msa1451570 AT3G12220.2 29.655 145 90 2 10 143 73 216 1.35e-11 62.0
Msa1451570 AT3G12240.1 31.293 147 85 4 10 143 104 247 1.39e-11 62.0
Msa1451570 AT3G12220.1 29.655 145 90 2 10 143 103 246 1.49e-11 62.0

Find 27 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGATGATGCCACAAGTTTAA+AGG 0.260603 tig0033486:-4840 Msa1451570:CDS
TATACCGTAACCTGTATTCT+TGG 0.320202 tig0033486:-5348 Msa1451570:CDS
GATGATGCCACAAGTTTAAA+GGG 0.364178 tig0033486:-4839 Msa1451570:CDS
TTTATTGTTGTGAAGAATAG+TGG 0.404755 tig0033486:+5011 Msa1451570:intergenic
CACCTTCATTCCAAGAATAC+AGG 0.411785 tig0033486:+5338 Msa1451570:intergenic
AATTTCAGATAGGGAATGCT+TGG 0.423855 tig0033486:-4865 Msa1451570:intron
AACATACAGAAATGCCTTTG+AGG 0.436367 tig0033486:+4965 Msa1451570:intergenic
CCTATGTCTTCCTCATCAAC+TGG 0.443865 tig0033486:-5119 Msa1451570:CDS
ATCTCCTGATTTGTCATAGT+CGG 0.468625 tig0033486:+5161 Msa1451570:intergenic
GAGGAAGACATAGGCATCCT+TGG 0.475321 tig0033486:+5128 Msa1451570:intergenic
CATTCCAAGAATACAGGTTA+CGG 0.481730 tig0033486:+5344 Msa1451570:intergenic
AACCTGTATTCTTGGAATGA+AGG 0.514399 tig0033486:-5340 Msa1451570:intron
ACATCCGACTATGACAAATC+AGG 0.514877 tig0033486:-5165 Msa1451570:CDS
TGTCTTCCTCATCAACTGGC+TGG 0.515449 tig0033486:-5115 Msa1451570:CDS
CCATCAGAGTTGATTCTGAA+GGG 0.523486 tig0033486:+5379 Msa1451570:intergenic
GCCATCAGAGTTGATTCTGA+AGG 0.530541 tig0033486:+5378 Msa1451570:intergenic
ATGACCAGCATAACTCTCTC+CGG 0.536968 tig0033486:+5053 Msa1451570:intergenic
ATCTCTCCAGCCAGTTGATG+AGG 0.560761 tig0033486:+5109 Msa1451570:intergenic
AACACTGTTATTAACCTCAA+AGG 0.561939 tig0033486:-4979 Msa1451570:CDS
TTCATTAGAAGTCAGGAGCT+AGG 0.574742 tig0033486:-5403 Msa1451570:intron
CCCTTCAGAATCAACTCTGA+TGG 0.578815 tig0033486:-5379 Msa1451570:CDS
ATAACCGGAGAGAGTTATGC+TGG 0.580139 tig0033486:-5057 Msa1451570:CDS
AGGAGATAAATCAACTGCCA+AGG 0.589939 tig0033486:-5145 Msa1451570:CDS
CCAGTTGATGAGGAAGACAT+AGG 0.602150 tig0033486:+5119 Msa1451570:intergenic
AGTTCAAAGCATGAGTCCAA+AGG 0.615853 tig0033486:+4804 Msa1451570:intergenic
ATGATGCCACAAGTTTAAAG+GGG 0.629930 tig0033486:-4838 Msa1451570:CDS
AGAATAGTGGATGCAAGCTG+AGG 0.669219 tig0033486:+5024 Msa1451560:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATTAAAGTTGTAT+TGG + tig0033486:5265-5284 Msa1451570:intergenic 10.0%
!! AAAAAAAATTAAAGTTGTAT+TGG + tig0033486:5265-5284 Msa1451570:intergenic 10.0%
!! CATATTTCATAATGATAAAT+TGG + tig0033486:4394-4413 Msa1451570:intergenic 15.0%
!!! TACTTTAAAAAATTTCAGAT+AGG - tig0033486:4766-4785 Msa1451570:CDS 15.0%
!!! ACTTTAAAAAATTTCAGATA+GGG - tig0033486:4767-4786 Msa1451570:CDS 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + tig0033486:5225-5244 Msa1451570:intergenic 15.0%
!! CATATTTCATAATGATAAAT+TGG + tig0033486:4394-4413 Msa1451570:intergenic 15.0%
!!! TACTTTAAAAAATTTCAGAT+AGG - tig0033486:4766-4785 Msa1451570:CDS 15.0%
!!! ACTTTAAAAAATTTCAGATA+GGG - tig0033486:4767-4786 Msa1451570:CDS 15.0%
!!! CATTTTGAAACAAATTTTTT+TGG + tig0033486:5225-5244 Msa1451570:intergenic 15.0%
!! TAAAAATTTCATTAGAAGTC+AGG - tig0033486:4231-4250 Msa1451570:intron 20.0%
!! TATCAATAATGTAACACTAA+AGG - tig0033486:4927-4946 Msa1451570:intron 20.0%
!! TAAAAATTTCATTAGAAGTC+AGG - tig0033486:4231-4250 Msa1451570:intron 20.0%
!! TATCAATAATGTAACACTAA+AGG - tig0033486:4927-4946 Msa1451570:intron 20.0%
! TTTATTGTTGTGAAGAATAG+TGG + tig0033486:4633-4652 Msa1451570:intergenic 25.0%
! AACCATAATAATCAGAACAA+GGG + tig0033486:5059-5078 Msa1451570:intergenic 25.0%
! TATAGAATATTACCTGCAAT+GGG + tig0033486:5142-5161 Msa1451570:intergenic 25.0%
! TTATAGAATATTACCTGCAA+TGG + tig0033486:5143-5162 Msa1451570:intergenic 25.0%
! GCATTAAATTATGGATATAC+AGG - tig0033486:5397-5416 Msa1451570:intron 25.0%
! TTTATTGTTGTGAAGAATAG+TGG + tig0033486:4633-4652 Msa1451570:intergenic 25.0%
! AACCATAATAATCAGAACAA+GGG + tig0033486:5059-5078 Msa1451570:intergenic 25.0%
! TATAGAATATTACCTGCAAT+GGG + tig0033486:5142-5161 Msa1451570:intergenic 25.0%
! TTATAGAATATTACCTGCAA+TGG + tig0033486:5143-5162 Msa1451570:intergenic 25.0%
! GCATTAAATTATGGATATAC+AGG - tig0033486:5397-5416 Msa1451570:intron 25.0%
! ACCAGAGATTTTTACATAAC+CGG - tig0033486:4569-4588 Msa1451570:intron 30.0%
AACACTGTTATTAACCTCAA+AGG - tig0033486:4662-4681 Msa1451570:intron 30.0%
TGTGAGTTACATTTCATACT+TGG + tig0033486:4716-4735 Msa1451570:intergenic 30.0%
TATCTTTCCATGTTCAAAGA+AGG + tig0033486:4953-4972 Msa1451570:intergenic 30.0%
GAACCATAATAATCAGAACA+AGG + tig0033486:5060-5079 Msa1451570:intergenic 30.0%
TTCATGCAAAACCTACAAAT+TGG - tig0033486:5115-5134 Msa1451570:CDS 30.0%
!! AAGTGACACTCATTTTGAAA+CGG + tig0033486:5199-5218 Msa1451570:intergenic 30.0%
AAAGTTTGAAAGGGTAAAGT+TGG + tig0033486:5289-5308 Msa1451570:intergenic 30.0%
TGTGAGAGAAAAGTTTGAAA+GGG + tig0033486:5298-5317 Msa1451570:intergenic 30.0%
! ACCAGAGATTTTTACATAAC+CGG - tig0033486:4569-4588 Msa1451570:intron 30.0%
AACACTGTTATTAACCTCAA+AGG - tig0033486:4662-4681 Msa1451570:intron 30.0%
TGTGAGTTACATTTCATACT+TGG + tig0033486:4716-4735 Msa1451570:intergenic 30.0%
TATCTTTCCATGTTCAAAGA+AGG + tig0033486:4953-4972 Msa1451570:intergenic 30.0%
GAACCATAATAATCAGAACA+AGG + tig0033486:5060-5079 Msa1451570:intergenic 30.0%
TTCATGCAAAACCTACAAAT+TGG - tig0033486:5115-5134 Msa1451570:CDS 30.0%
!! AAGTGACACTCATTTTGAAA+CGG + tig0033486:5199-5218 Msa1451570:intergenic 30.0%
AAAGTTTGAAAGGGTAAAGT+TGG + tig0033486:5289-5308 Msa1451570:intergenic 30.0%
TGTGAGAGAAAAGTTTGAAA+GGG + tig0033486:5298-5317 Msa1451570:intergenic 30.0%
TATACCGTAACCTGTATTCT+TGG - tig0033486:4293-4312 Msa1451570:intron 35.0%
CATTCCAAGAATACAGGTTA+CGG + tig0033486:4300-4319 Msa1451570:intergenic 35.0%
AACCTGTATTCTTGGAATGA+AGG - tig0033486:4301-4320 Msa1451570:intron 35.0%
! ATCTCCTGATTTGTCATAGT+CGG + tig0033486:4483-4502 Msa1451570:intergenic 35.0%
!!! AAATCTCTGGTTTTGTACTG+TGG + tig0033486:4560-4579 Msa1451570:intergenic 35.0%
TCCGGTTATGTAAAAATCTC+TGG + tig0033486:4573-4592 Msa1451570:intergenic 35.0%
AACATACAGAAATGCCTTTG+AGG + tig0033486:4679-4698 Msa1451570:intergenic 35.0%
AATTTCAGATAGGGAATGCT+TGG - tig0033486:4776-4795 Msa1451570:CDS 35.0%
! TGATGATGCCACAAGTTTAA+AGG - tig0033486:4801-4820 Msa1451570:CDS 35.0%
GATGATGCCACAAGTTTAAA+GGG - tig0033486:4802-4821 Msa1451570:CDS 35.0%
ATGATGCCACAAGTTTAAAG+GGG - tig0033486:4803-4822 Msa1451570:CDS 35.0%
GAAAAACCCCTTTAAACTTG+TGG + tig0033486:4812-4831 Msa1451570:intergenic 35.0%
!! AGTTGAACCATTTTTCAGAG+AGG + tig0033486:5013-5032 Msa1451570:intergenic 35.0%
! TCTCTGAAAAATGGTTCAAC+TGG - tig0033486:5012-5031 Msa1451570:CDS 35.0%
GACCCTTGTTCTGATTATTA+TGG - tig0033486:5054-5073 Msa1451570:CDS 35.0%
AACCTCTGGTCTATTTAGAT+AGG + tig0033486:5085-5104 Msa1451570:intergenic 35.0%
AAATAGACCAGAGGTTCAAA+AGG - tig0033486:5089-5108 Msa1451570:CDS 35.0%
GTGTGAGAGAAAAGTTTGAA+AGG + tig0033486:5299-5318 Msa1451570:intergenic 35.0%
TTTCAATGCAACTTACTGAC+TGG - tig0033486:5322-5341 Msa1451570:intron 35.0%
!! ACAGTTGGTAAGATGGTAAT+TGG + tig0033486:5357-5376 Msa1451570:intergenic 35.0%
!! ATACTTGACAGTTGGTAAGA+TGG + tig0033486:5364-5383 Msa1451570:intergenic 35.0%
! TCGATAGCGGCATTAAATTA+TGG - tig0033486:5388-5407 Msa1451570:CDS 35.0%
TATACCGTAACCTGTATTCT+TGG - tig0033486:4293-4312 Msa1451570:intron 35.0%
CATTCCAAGAATACAGGTTA+CGG + tig0033486:4300-4319 Msa1451570:intergenic 35.0%
AACCTGTATTCTTGGAATGA+AGG - tig0033486:4301-4320 Msa1451570:intron 35.0%
! ATCTCCTGATTTGTCATAGT+CGG + tig0033486:4483-4502 Msa1451570:intergenic 35.0%
!!! AAATCTCTGGTTTTGTACTG+TGG + tig0033486:4560-4579 Msa1451570:intergenic 35.0%
TCCGGTTATGTAAAAATCTC+TGG + tig0033486:4573-4592 Msa1451570:intergenic 35.0%
AACATACAGAAATGCCTTTG+AGG + tig0033486:4679-4698 Msa1451570:intergenic 35.0%
AATTTCAGATAGGGAATGCT+TGG - tig0033486:4776-4795 Msa1451570:CDS 35.0%
! TGATGATGCCACAAGTTTAA+AGG - tig0033486:4801-4820 Msa1451570:CDS 35.0%
GATGATGCCACAAGTTTAAA+GGG - tig0033486:4802-4821 Msa1451570:CDS 35.0%
ATGATGCCACAAGTTTAAAG+GGG - tig0033486:4803-4822 Msa1451570:CDS 35.0%
GAAAAACCCCTTTAAACTTG+TGG + tig0033486:4812-4831 Msa1451570:intergenic 35.0%
!! AGTTGAACCATTTTTCAGAG+AGG + tig0033486:5013-5032 Msa1451570:intergenic 35.0%
! TCTCTGAAAAATGGTTCAAC+TGG - tig0033486:5012-5031 Msa1451570:CDS 35.0%
GACCCTTGTTCTGATTATTA+TGG - tig0033486:5054-5073 Msa1451570:CDS 35.0%
AACCTCTGGTCTATTTAGAT+AGG + tig0033486:5085-5104 Msa1451570:intergenic 35.0%
AAATAGACCAGAGGTTCAAA+AGG - tig0033486:5089-5108 Msa1451570:CDS 35.0%
GTGTGAGAGAAAAGTTTGAA+AGG + tig0033486:5299-5318 Msa1451570:intergenic 35.0%
TTTCAATGCAACTTACTGAC+TGG - tig0033486:5322-5341 Msa1451570:intron 35.0%
!! ACAGTTGGTAAGATGGTAAT+TGG + tig0033486:5357-5376 Msa1451570:intergenic 35.0%
!! ATACTTGACAGTTGGTAAGA+TGG + tig0033486:5364-5383 Msa1451570:intergenic 35.0%
! TCGATAGCGGCATTAAATTA+TGG - tig0033486:5388-5407 Msa1451570:CDS 35.0%
TTCATTAGAAGTCAGGAGCT+AGG - tig0033486:4238-4257 Msa1451570:intron 40.0%
! CCATCAGAGTTGATTCTGAA+GGG + tig0033486:4265-4284 Msa1451570:intergenic 40.0%
CACCTTCATTCCAAGAATAC+AGG + tig0033486:4306-4325 Msa1451570:intergenic 40.0%
ACATCCGACTATGACAAATC+AGG - tig0033486:4476-4495 Msa1451570:intron 40.0%
AGGAGATAAATCAACTGCCA+AGG - tig0033486:4496-4515 Msa1451570:intron 40.0%
!! AGGGGTTTTTCGATTACCTT+TGG - tig0033486:4821-4840 Msa1451570:CDS 40.0%
AGTTCAAAGCATGAGTCCAA+AGG + tig0033486:4840-4859 Msa1451570:intergenic 40.0%
CTAAAGGCCTTCTTTGAACA+TGG - tig0033486:4943-4962 Msa1451570:intron 40.0%
! CATGACTCCTCTCTGAAAAA+TGG - tig0033486:5003-5022 Msa1451570:CDS 40.0%
TGCCTATCTAAATAGACCAG+AGG - tig0033486:5080-5099 Msa1451570:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + tig0033486:5195-5214 Msa1451570:intergenic 40.0%
!!! TGACACTCATTTTGAAACGG+AGG + tig0033486:5196-5215 Msa1451570:intergenic 40.0%
TCGATGAGATACTTGACAGT+TGG + tig0033486:5372-5391 Msa1451570:intergenic 40.0%
GTCAAGTATCTCATCGATAG+CGG - tig0033486:5375-5394 Msa1451570:CDS 40.0%
TTCATTAGAAGTCAGGAGCT+AGG - tig0033486:4238-4257 Msa1451570:intron 40.0%
! CCATCAGAGTTGATTCTGAA+GGG + tig0033486:4265-4284 Msa1451570:intergenic 40.0%
CACCTTCATTCCAAGAATAC+AGG + tig0033486:4306-4325 Msa1451570:intergenic 40.0%
ACATCCGACTATGACAAATC+AGG - tig0033486:4476-4495 Msa1451570:intron 40.0%
AGGAGATAAATCAACTGCCA+AGG - tig0033486:4496-4515 Msa1451570:intron 40.0%
!! AGGGGTTTTTCGATTACCTT+TGG - tig0033486:4821-4840 Msa1451570:CDS 40.0%
AGTTCAAAGCATGAGTCCAA+AGG + tig0033486:4840-4859 Msa1451570:intergenic 40.0%
CTAAAGGCCTTCTTTGAACA+TGG - tig0033486:4943-4962 Msa1451570:intron 40.0%
! CATGACTCCTCTCTGAAAAA+TGG - tig0033486:5003-5022 Msa1451570:CDS 40.0%
TGCCTATCTAAATAGACCAG+AGG - tig0033486:5080-5099 Msa1451570:CDS 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + tig0033486:5195-5214 Msa1451570:intergenic 40.0%
!!! TGACACTCATTTTGAAACGG+AGG + tig0033486:5196-5215 Msa1451570:intergenic 40.0%
TCGATGAGATACTTGACAGT+TGG + tig0033486:5372-5391 Msa1451570:intergenic 40.0%
GTCAAGTATCTCATCGATAG+CGG - tig0033486:5375-5394 Msa1451570:CDS 40.0%
CCCTTCAGAATCAACTCTGA+TGG - tig0033486:4262-4281 Msa1451570:intron 45.0%
! GCCATCAGAGTTGATTCTGA+AGG + tig0033486:4266-4285 Msa1451570:intergenic 45.0%
TATGAAAATCCCACTCCTGC+TGG + tig0033486:4446-4465 Msa1451570:intergenic 45.0%
!! CCAGTTGATGAGGAAGACAT+AGG + tig0033486:4525-4544 Msa1451570:intergenic 45.0%
CCTATGTCTTCCTCATCAAC+TGG - tig0033486:4522-4541 Msa1451570:intron 45.0%
ATAACCGGAGAGAGTTATGC+TGG - tig0033486:4584-4603 Msa1451570:intron 45.0%
ATGACCAGCATAACTCTCTC+CGG + tig0033486:4591-4610 Msa1451570:intergenic 45.0%
!! AGAATAGTGGATGCAAGCTG+AGG + tig0033486:4620-4639 Msa1451570:intergenic 45.0%
AGAGAGGAGTCATGACACAA+TGG + tig0033486:4997-5016 Msa1451570:intergenic 45.0%
! TGAAGAGCCTTTTGAACCTC+TGG + tig0033486:5099-5118 Msa1451570:intergenic 45.0%
CTGCAATGGGTCCAATTTGT+AGG + tig0033486:5129-5148 Msa1451570:intergenic 45.0%
CTACAAATTGGACCCATTGC+AGG - tig0033486:5127-5146 Msa1451570:CDS 45.0%
CCCTTCAGAATCAACTCTGA+TGG - tig0033486:4262-4281 Msa1451570:intron 45.0%
! GCCATCAGAGTTGATTCTGA+AGG + tig0033486:4266-4285 Msa1451570:intergenic 45.0%
TATGAAAATCCCACTCCTGC+TGG + tig0033486:4446-4465 Msa1451570:intergenic 45.0%
!! CCAGTTGATGAGGAAGACAT+AGG + tig0033486:4525-4544 Msa1451570:intergenic 45.0%
CCTATGTCTTCCTCATCAAC+TGG - tig0033486:4522-4541 Msa1451570:intron 45.0%
ATAACCGGAGAGAGTTATGC+TGG - tig0033486:4584-4603 Msa1451570:intron 45.0%
ATGACCAGCATAACTCTCTC+CGG + tig0033486:4591-4610 Msa1451570:intergenic 45.0%
!! AGAATAGTGGATGCAAGCTG+AGG + tig0033486:4620-4639 Msa1451570:intergenic 45.0%
AGAGAGGAGTCATGACACAA+TGG + tig0033486:4997-5016 Msa1451570:intergenic 45.0%
! TGAAGAGCCTTTTGAACCTC+TGG + tig0033486:5099-5118 Msa1451570:intergenic 45.0%
CTGCAATGGGTCCAATTTGT+AGG + tig0033486:5129-5148 Msa1451570:intergenic 45.0%
CTACAAATTGGACCCATTGC+AGG - tig0033486:5127-5146 Msa1451570:CDS 45.0%
GAGGAAGACATAGGCATCCT+TGG + tig0033486:4516-4535 Msa1451570:intergenic 50.0%
TGTCTTCCTCATCAACTGGC+TGG - tig0033486:4526-4545 Msa1451570:intron 50.0%
! ATCTCTCCAGCCAGTTGATG+AGG + tig0033486:4535-4554 Msa1451570:intergenic 50.0%
GAGGAAGACATAGGCATCCT+TGG + tig0033486:4516-4535 Msa1451570:intergenic 50.0%
TGTCTTCCTCATCAACTGGC+TGG - tig0033486:4526-4545 Msa1451570:intron 50.0%
! ATCTCTCCAGCCAGTTGATG+AGG + tig0033486:4535-4554 Msa1451570:intergenic 50.0%
CTCTTCCTAGAGTCTCCAGC+AGG - tig0033486:4428-4447 Msa1451570:intron 55.0%
CTAGAGTCTCCAGCAGGAGT+GGG - tig0033486:4434-4453 Msa1451570:intron 55.0%
CTCTTCCTAGAGTCTCCAGC+AGG - tig0033486:4428-4447 Msa1451570:intron 55.0%
CTAGAGTCTCCAGCAGGAGT+GGG - tig0033486:4434-4453 Msa1451570:intron 55.0%
CCACTCCTGCTGGAGACTCT+AGG + tig0033486:4436-4455 Msa1451570:intergenic 60.0%
CCTAGAGTCTCCAGCAGGAG+TGG - tig0033486:4433-4452 Msa1451570:intron 60.0%
CCACTCCTGCTGGAGACTCT+AGG + tig0033486:4436-4455 Msa1451570:intergenic 60.0%
CCTAGAGTCTCCAGCAGGAG+TGG - tig0033486:4433-4452 Msa1451570:intron 60.0%
Chromosome Type Strat End Strand Name
tig0033486 gene 4224 5439 4224 ID=Msa1451570;Name=Msa1451570
tig0033486 mRNA 4224 5439 4224 ID=Msa1451570-mRNA-1;Parent=Msa1451570;Name=Msa1451570-mRNA-1;_AED=0.47;_eAED=0.48;_QI=0|0|0|0.8|0.75|0.8|5|0|163
tig0033486 exon 5434 5439 5434 ID=Msa1451570-mRNA-1:exon:18132;Parent=Msa1451570-mRNA-1
tig0033486 exon 5341 5410 5341 ID=Msa1451570-mRNA-1:exon:18131;Parent=Msa1451570-mRNA-1
tig0033486 exon 4972 5213 4972 ID=Msa1451570-mRNA-1:exon:18130;Parent=Msa1451570-mRNA-1
tig0033486 exon 4727 4879 4727 ID=Msa1451570-mRNA-1:exon:18129;Parent=Msa1451570-mRNA-1
tig0033486 exon 4224 4244 4224 ID=Msa1451570-mRNA-1:exon:18128;Parent=Msa1451570-mRNA-1
tig0033486 CDS 5434 5439 5434 ID=Msa1451570-mRNA-1:cds;Parent=Msa1451570-mRNA-1
tig0033486 CDS 5341 5410 5341 ID=Msa1451570-mRNA-1:cds;Parent=Msa1451570-mRNA-1
tig0033486 CDS 4972 5213 4972 ID=Msa1451570-mRNA-1:cds;Parent=Msa1451570-mRNA-1
tig0033486 CDS 4727 4879 4727 ID=Msa1451570-mRNA-1:cds;Parent=Msa1451570-mRNA-1
tig0033486 CDS 4224 4244 4224 ID=Msa1451570-mRNA-1:cds;Parent=Msa1451570-mRNA-1
Gene Sequence

>Msa1451570

ATGGAGGAGCTAGGACCCTTCAGAATCAACTCTGATGGCAAAACACTATACCGTAACCTGTATTCTTGGAATGAAGGAGTGGGATTTTCATACTCAAATACAACATCCGACTATGACAAATCAGGAGATAAATCAACTGCCAAGGATGCCTATGTCTTCCTCATCAACTGGCTGGAGAGATTTCCACAGTACAAAACCAGAGATTTTTACATAACCGGAGAGAGTTATGCTGGTCATTATGTTCCTCAGCTTGCATCCACTATTCTTCACAACAATAAACTCTATAACAACACTGTTATTAACCTCAAAGGCATTTCTATAGGGAATGCTTGGATTGATGATGCCACAAGTTTAAAGGGGTTTTTCGATTACCTTTGGACTCATGCTTTGAACTCAGATCAAACTCATGAGTTGATTGAGAAGTACTGTGACTTCACTACTGAAAATGTTTCAGCAATTTGTATCAATAATGCAAGTTCACTTTCATTATAA

Protein sequence

>Msa1451570

MEELGPFRINSDGKTLYRNLYSWNEGVGFSYSNTTSDYDKSGDKSTAKDAYVFLINWLERFPQYKTRDFYITGESYAGHYVPQLASTILHNNKLYNNTVINLKGISIGNAWIDDATSLKGFFDYLWTHALNSDQTHELIEKYCDFTTENVSAICINNASSLSL*