AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0637830

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637830 MtrunA17_Chr4g0020771 95.045 444 22 0 1 444 1 444 0.0 891
Msa0637830 MtrunA17_Chr3g0089021 59.551 445 170 6 1 443 2 438 0.0 521
Msa0637830 MtrunA17_Chr1g0173451 50.685 438 201 6 8 441 9 435 5.61e-145 421
Msa0637830 MtrunA17_Chr2g0332801 46.631 371 191 5 73 439 58 425 1.95e-114 343
Msa0637830 MtrunA17_Chr8g0365901 39.318 440 241 10 7 439 9 429 3.16e-108 327
Msa0637830 MtrunA17_Chr7g0257701 47.368 342 132 3 62 365 53 384 1.01e-101 309
Msa0637830 MtrunA17_Chr7g0257721 48.225 338 160 6 1 330 1 331 5.45e-96 292
Msa0637830 MtrunA17_Chr6g0449961 44.023 343 179 7 76 415 47 379 6.57e-93 287
Msa0637830 MtrunA17_Chr4g0052621 43.251 363 191 7 68 419 59 417 1.34e-90 282
Msa0637830 MtrunA17_Chr7g0270361 40.872 367 207 6 62 419 55 420 4.65e-90 281
Msa0637830 MtrunA17_Chr3g0121881 40.379 369 201 7 70 430 29 386 4.50e-87 271
Msa0637830 MtrunA17_Chr1g0194231 40.872 367 192 9 70 419 77 435 2.95e-86 271
Msa0637830 MtrunA17_Chr2g0303941 41.885 382 204 10 65 440 19 388 2.96e-86 269
Msa0637830 MtrunA17_Chr5g0413141 38.043 368 219 7 79 439 64 429 6.72e-86 270
Msa0637830 MtrunA17_Chr8g0365891 38.360 378 196 7 70 416 103 474 4.95e-84 267
Msa0637830 MtrunA17_Chr4g0043661 37.867 375 205 8 71 430 20 381 1.90e-83 261
Msa0637830 MtrunA17_Chr5g0418411 40.556 360 196 8 79 430 34 383 1.84e-82 259
Msa0637830 MtrunA17_Chr3g0121891 39.776 357 194 7 79 426 34 378 2.90e-81 256
Msa0637830 MtrunA17_Chr5g0413411 38.275 371 193 8 76 416 123 487 1.37e-79 256
Msa0637830 MtrunA17_Chr2g0332971 40.525 343 196 5 76 412 30 370 1.44e-79 252
Msa0637830 MtrunA17_Chr4g0067631 37.717 403 229 14 51 443 32 422 7.60e-78 248
Msa0637830 MtrunA17_Chr7g0230891 39.247 372 208 10 75 440 38 397 9.87e-77 244
Msa0637830 MtrunA17_Chr8g0348981 40.000 355 196 9 73 418 26 372 2.24e-74 238
Msa0637830 MtrunA17_Chr8g0337571 38.874 373 200 9 70 434 27 379 1.91e-73 236
Msa0637830 MtrunA17_Chr6g0461181 35.396 404 204 9 75 432 31 423 2.00e-72 234
Msa0637830 MtrunA17_Chr8g0337581 38.378 370 201 9 76 437 33 383 1.35e-71 231
Msa0637830 MtrunA17_Chr4g0043431 39.826 344 194 9 76 414 37 372 2.83e-71 230
Msa0637830 MtrunA17_Chr7g0228411 36.340 377 205 10 80 428 46 415 1.24e-70 229
Msa0637830 MtrunA17_Chr2g0293681 40.122 329 183 6 68 386 61 385 2.31e-70 229
Msa0637830 MtrunA17_Chr4g0018151 34.152 448 245 10 12 430 1 427 2.50e-70 229
Msa0637830 MtrunA17_Chr2g0307831 34.908 381 237 9 66 441 17 391 2.35e-68 223
Msa0637830 MtrunA17_Chr2g0307821 34.908 381 237 9 66 441 17 391 2.35e-68 223
Msa0637830 MtrunA17_Chr3g0100091 38.542 288 161 5 142 428 59 331 7.34e-66 215
Msa0637830 MtrunA17_Chr2g0291841 37.463 339 202 8 104 440 29 359 7.12e-65 213
Msa0637830 MtrunA17_Chr2g0307811 35.789 380 221 9 73 441 24 391 2.94e-64 212
Msa0637830 MtrunA17_Chr1g0195221 32.658 395 244 11 57 439 18 402 1.20e-62 208
Msa0637830 MtrunA17_Chr2g0295451 36.441 354 190 13 61 393 42 381 2.66e-61 204
Msa0637830 MtrunA17_Chr1g0150291 34.783 345 207 9 74 412 45 377 4.81e-60 201
Msa0637830 MtrunA17_Chr1g0150301 34.783 345 207 9 74 412 27 359 6.20e-59 198
Msa0637830 MtrunA17_Chr5g0425811 37.102 283 161 7 90 367 2 272 2.47e-55 185
Msa0637830 MtrunA17_Chr8g0336481 37.729 273 152 4 131 401 14 270 8.01e-54 181
Msa0637830 MtrunA17_Chr3g0093011 41.964 224 127 1 199 419 13 236 6.38e-53 178
Msa0637830 MtrunA17_Chr5g0447901 35.127 316 188 9 73 382 24 328 7.12e-52 177
Msa0637830 MtrunA17_Chr8g0337601 42.616 237 129 4 202 437 4 234 1.58e-51 174
Msa0637830 MtrunA17_Chr8g0337511 39.827 231 131 3 199 428 4 227 4.78e-51 172
Msa0637830 MtrunA17_Chr8g0337521 35.816 282 156 7 54 329 11 273 7.40e-46 160
Msa0637830 MtrunA17_Chr7g0273191 51.429 140 65 2 174 313 2 138 7.65e-44 150
Msa0637830 MtrunA17_Chr1g0149241 29.650 371 213 9 66 430 20 348 4.45e-41 150
Msa0637830 MtrunA17_Chr8g0337351 46.061 165 88 1 217 380 8 172 4.85e-41 144
Msa0637830 MtrunA17_Chr7g0257711 50.862 116 56 1 330 444 1 116 1.45e-30 114
Msa0637830 MtrunA17_Chr8g0337551 46.875 128 68 0 202 329 7 134 1.43e-29 112
Msa0637830 MtrunA17_Chr4g0067811 23.951 405 231 11 74 429 40 416 7.13e-21 94.7
Msa0637830 MtrunA17_Chr3g0095221 25.840 387 229 14 74 421 47 414 2.01e-20 93.2
Msa0637830 MtrunA17_Chr2g0301091 28.571 259 160 7 168 412 169 416 5.75e-20 92.0
Msa0637830 MtrunA17_Chr5g0442221 24.802 379 240 13 74 419 44 410 2.20e-18 87.0
Msa0637830 MtrunA17_Chr7g0273181 47.500 80 42 0 347 426 1 80 2.33e-18 80.9
Msa0637830 MtrunA17_Chr4g0070281 26.255 259 166 7 168 412 188 435 2.81e-18 87.0
Msa0637830 MtrunA17_Chr7g0270821 25.886 367 202 13 74 394 43 385 1.28e-17 84.7
Msa0637830 MtrunA17_Chr1g0193961 26.611 357 195 13 74 386 43 376 2.06e-17 84.3
Msa0637830 MtrunA17_Chr3g0093021 41.985 131 63 9 68 190 17 142 1.30e-16 77.4
Msa0637830 MtrunA17_Chr2g0330221 32.065 184 115 6 67 247 17 193 4.27e-16 77.0
Msa0637830 MtrunA17_Chr3g0130251 25.794 252 163 6 157 394 177 418 6.81e-16 79.7
Msa0637830 MtrunA17_Chr2g0295241 21.728 405 240 10 74 429 37 413 2.68e-15 77.8
Msa0637830 MtrunA17_Chr7g0255311 22.829 403 251 15 54 415 43 426 2.78e-15 77.8
Msa0637830 MtrunA17_Chr8g0387391 23.360 381 231 13 75 414 45 405 2.79e-15 77.8
Msa0637830 MtrunA17_Chr8g0348491 24.074 378 239 13 48 390 29 393 4.08e-15 77.4
Msa0637830 MtrunA17_Chr7g0248451 22.549 408 256 13 75 441 56 444 7.73e-14 73.2
Msa0637830 MtrunA17_Chr8g0337541 35.455 110 63 5 76 179 33 140 8.20e-14 68.9
Msa0637830 MtrunA17_Chr1g0202651 22.487 378 238 11 76 415 57 417 1.75e-13 72.4
Msa0637830 MtrunA17_Chr8g0373171 40.506 79 47 0 200 278 7 85 1.82e-13 67.0
Msa0637830 MtrunA17_Chr1g0202641 22.487 378 238 14 76 415 57 417 3.16e-12 68.9
Msa0637830 MtrunA17_Chr1g0202641 22.102 371 248 13 76 415 557 917 5.30e-11 65.1
Msa0637830 MtrunA17_Chr8g0337561 39.423 104 56 3 332 434 8 105 4.09e-12 62.8
Msa0637830 MtrunA17_Chr8g0337531 38.679 106 58 3 330 434 23 122 3.06e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0637830 AT3G07970.1 52.203 454 190 11 1 442 1 439 4.53e-149 431
Msa0637830 AT3G57510.1 48.190 442 201 12 11 442 8 431 3.47e-136 398
Msa0637830 AT2G41850.1 49.660 441 196 12 10 441 7 430 2.46e-126 373
Msa0637830 AT1G80170.1 47.668 386 192 7 59 439 40 420 2.00e-118 353
Msa0637830 AT1G23460.2 45.119 379 199 7 66 439 33 407 4.75e-108 327
Msa0637830 AT1G23460.1 45.119 379 199 7 66 439 57 431 9.82e-108 327
Msa0637830 AT1G70500.1 43.272 379 206 7 66 439 57 431 7.30e-104 317
Msa0637830 AT1G56710.1 43.697 357 184 7 76 419 50 402 3.37e-92 286
Msa0637830 AT3G15720.3 42.973 370 189 8 70 430 19 375 3.63e-92 286
Msa0637830 AT3G15720.1 42.973 370 189 8 70 430 20 376 3.85e-92 286
Msa0637830 AT5G14650.1 40.160 376 210 7 49 419 26 391 2.56e-89 278
Msa0637830 AT3G15720.2 42.703 370 187 9 70 430 19 372 2.84e-89 279
Msa0637830 AT2G43890.1 40.053 377 214 8 67 440 22 389 4.89e-88 274
Msa0637830 AT1G48100.1 40.054 367 197 8 68 419 74 432 5.41e-88 276
Msa0637830 AT3G26610.1 35.714 420 250 9 6 419 8 413 7.18e-86 271
Msa0637830 AT4G35670.1 41.111 360 195 7 76 429 26 374 1.02e-85 268
Msa0637830 AT5G27530.1 40.223 358 189 5 79 430 58 396 1.86e-85 269
Msa0637830 AT1G05650.1 39.362 376 217 7 67 439 21 388 4.04e-83 261
Msa0637830 AT1G02460.1 41.033 368 189 9 72 419 87 446 4.57e-83 264
Msa0637830 AT3G15720.4 43.344 323 164 6 114 430 3 312 5.98e-83 261
Msa0637830 AT1G60590.1 38.649 370 196 7 76 416 125 492 1.13e-81 262
Msa0637830 AT1G05660.1 38.992 377 217 8 67 439 21 388 2.08e-81 256
Msa0637830 AT1G10640.1 38.420 367 198 7 76 416 121 485 9.83e-81 259
Msa0637830 AT1G80140.1 41.195 318 169 7 108 419 6 311 2.89e-80 252
Msa0637830 AT4G18180.1 37.831 378 209 8 73 430 38 409 6.49e-79 251
Msa0637830 AT1G80170.2 46.931 277 138 6 59 331 40 311 1.88e-78 247
Msa0637830 AT5G44840.1 37.500 360 209 7 76 429 26 375 3.52e-78 248
Msa0637830 AT2G33160.1 39.628 376 211 9 73 439 31 399 1.55e-76 251
Msa0637830 AT2G43870.1 39.426 383 215 12 65 441 12 383 2.30e-76 243
Msa0637830 AT5G17200.1 38.918 388 196 9 70 430 35 408 2.99e-76 244
Msa0637830 AT4G01890.1 38.268 358 201 8 76 417 67 420 6.12e-76 245
Msa0637830 AT2G15460.1 36.412 379 222 9 73 440 30 400 2.91e-75 241
Msa0637830 AT1G43080.1 37.895 380 215 11 73 440 30 400 3.85e-75 241
Msa0637830 AT3G59850.1 40.351 342 189 10 79 414 28 360 1.59e-74 239
Msa0637830 AT2G15450.1 36.243 378 222 9 73 439 30 399 1.65e-74 239
Msa0637830 AT3G59850.2 40.351 342 189 10 79 414 72 404 3.51e-74 239
Msa0637830 AT2G15470.1 36.148 379 223 9 73 440 30 400 8.82e-74 237
Msa0637830 AT1G43090.1 36.802 394 226 10 54 436 15 396 2.72e-73 237
Msa0637830 AT1G17150.1 38.005 371 215 9 76 439 35 397 1.24e-72 234
Msa0637830 AT1G02790.1 37.076 383 208 11 76 441 54 420 2.84e-72 234
Msa0637830 AT1G43100.1 36.548 394 227 10 54 436 15 396 3.78e-72 234
Msa0637830 AT2G26620.1 36.605 377 222 9 73 440 30 398 3.99e-72 233
Msa0637830 AT2G40310.1 36.772 378 218 11 75 440 32 400 5.68e-72 233
Msa0637830 AT1G78400.1 37.366 372 216 11 76 439 37 399 9.89e-72 232
Msa0637830 AT4G13760.1 35.176 398 235 10 54 440 15 400 1.80e-71 231
Msa0637830 AT2G43880.1 38.810 353 201 8 67 414 24 366 8.29e-71 229
Msa0637830 AT2G43860.1 39.276 359 202 10 64 414 20 370 1.07e-70 229
Msa0637830 AT4G35670.2 42.238 277 149 2 153 429 2 267 1.76e-70 225
Msa0637830 AT1G65570.1 36.022 372 225 8 74 440 31 394 8.91e-70 226
Msa0637830 AT5G48140.1 37.322 351 204 8 85 429 33 373 9.09e-70 226
Msa0637830 AT3G07820.1 35.772 369 221 9 81 442 28 387 1.11e-69 226
Msa0637830 AT3G07840.1 35.040 371 218 9 73 429 13 374 2.73e-68 223
Msa0637830 AT3G07830.1 34.807 362 221 8 85 440 33 385 3.67e-68 223
Msa0637830 AT3G14040.1 37.265 373 218 9 74 439 71 434 1.22e-67 223
Msa0637830 AT5G44830.1 36.503 326 185 4 106 429 11 316 1.90e-67 218
Msa0637830 AT3G07850.1 36.939 379 223 9 68 439 64 433 2.53e-67 221
Msa0637830 AT4G32380.1 34.409 372 224 8 73 434 25 386 6.23e-66 218
Msa0637830 AT5G14650.2 37.847 288 166 5 49 331 26 305 1.93e-60 200
Msa0637830 AT4G32370.1 37.217 309 172 7 69 365 29 327 2.25e-60 200
Msa0637830 AT4G32375.1 38.697 261 149 3 153 412 13 263 9.05e-58 196
Msa0637830 AT2G43880.2 38.511 309 175 8 67 370 24 322 1.46e-57 192
Msa0637830 AT5G39910.1 34.754 305 168 7 73 369 35 316 5.41e-52 179
Msa0637830 AT4G32380.2 30.541 370 200 8 73 434 25 345 7.14e-51 177
Msa0637830 AT1G19170.1 27.799 259 162 6 168 412 201 448 2.09e-20 94.0
Msa0637830 AT3G62110.1 28.448 232 143 5 168 386 156 377 6.27e-20 92.4
Msa0637830 AT3G62110.2 28.448 232 143 5 168 386 156 377 6.27e-20 92.4
Msa0637830 AT3G42950.1 26.738 374 228 14 73 412 65 426 7.52e-20 92.0
Msa0637830 AT4G23820.1 24.810 395 239 14 74 429 41 416 2.64e-19 90.5
Msa0637830 AT3G16850.1 24.151 265 169 5 168 415 153 402 9.03e-18 85.9
Msa0637830 AT3G06770.5 24.409 381 225 12 74 412 44 403 1.16e-17 85.5
Msa0637830 AT3G06770.2 24.409 381 225 12 74 412 43 402 1.30e-17 85.1
Msa0637830 AT4G33440.1 24.745 392 219 14 73 408 71 442 3.49e-17 84.0
Msa0637830 AT5G41870.1 25.141 354 207 14 73 386 44 379 8.68e-17 82.8
Msa0637830 AT5G49215.2 23.499 383 230 11 74 414 41 402 9.50e-17 82.4
Msa0637830 AT5G49215.1 23.499 383 230 11 74 414 43 404 9.94e-17 82.4
Msa0637830 AT2G23900.1 24.684 316 179 10 76 350 58 355 2.07e-16 81.6
Msa0637830 AT3G48950.1 24.843 318 176 10 76 350 47 344 3.84e-16 80.9
Msa0637830 AT3G06770.4 24.419 258 171 5 168 412 69 315 1.21e-15 78.6
Msa0637830 AT3G06770.1 24.419 258 171 5 168 412 87 333 1.23e-15 78.6
Msa0637830 AT3G06770.3 24.419 258 171 5 168 412 87 333 1.23e-15 78.6
Msa0637830 AT4G23500.1 25.316 316 178 11 75 350 69 366 1.82e-15 79.0
Msa0637830 AT3G61490.4 30.208 192 113 6 168 346 271 454 1.21e-13 73.6
Msa0637830 AT3G61490.5 30.208 192 113 6 168 346 173 356 1.29e-13 73.2
Msa0637830 AT3G61490.2 30.208 192 113 6 168 346 158 341 1.50e-13 72.8
Msa0637830 AT3G61490.3 30.208 192 113 6 168 346 158 341 1.50e-13 72.8
Msa0637830 AT3G61490.1 30.208 192 113 6 168 346 158 341 1.50e-13 72.8

Find 88 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACCAAATACTGCCTTTA+TGG 0.149151 4_3:+31101037 Msa0637830:CDS
GACATAATAAACTGTGATAT+TGG 0.217261 4_3:+31102067 Msa0637830:CDS
CTCACCATAAAGGCAGTATT+TGG 0.245870 4_3:-31101041 None:intergenic
GTAGTTCCTCCACCACCTTC+TGG 0.295016 4_3:-31103605 None:intergenic
ATTTGAGAGTAAAGAATCTA+AGG 0.331559 4_3:+31101912 Msa0637830:CDS
GAGATGGTATATCCTATTCT+TGG 0.332828 4_3:-31100988 None:intergenic
TTGCAGAGAAATATACTTGC+AGG 0.334080 4_3:+31103568 Msa0637830:CDS
GCACGGCTTTGTTCCGCTCT+TGG 0.338883 4_3:-31103460 None:intergenic
AAAACAAAACATCAACGTTT+TGG 0.343362 4_3:+31100693 Msa0637830:CDS
AACTCATCATGTTAGCTCTA+TGG 0.350028 4_3:+31101382 Msa0637830:intron
GTAGTATTGATCTATGATTA+TGG 0.353266 4_3:-31103417 None:intergenic
ATCATGAGAAGTGTGATAAT+TGG 0.354858 4_3:-31100567 None:intergenic
GTGAACAGGGCTGCCTTAAC+AGG 0.368388 4_3:+31102809 Msa0637830:CDS
GTCTCAAATTTCAAAGTTGA+TGG 0.371266 4_3:+31101475 Msa0637830:CDS
GCTCTTGGCATGGCTCTGTT+TGG 0.383793 4_3:-31103445 None:intergenic
GCGGACCCGGACATGGAATC+AGG 0.384459 4_3:+31102277 Msa0637830:CDS
AAAACTTACAAGGTTATTGT+TGG 0.389616 4_3:-31101554 None:intergenic
TCCATTAGTTGTTCCTGTTA+AGG 0.393409 4_3:-31102822 None:intergenic
ACATAATAAACTGTGATATT+GGG 0.395546 4_3:+31102068 Msa0637830:CDS
TTTCCAATGTAGTAGTGAAC+AGG 0.405039 4_3:+31102795 Msa0637830:CDS
CTCCTTTAAGGCATTTAAGA+AGG 0.412653 4_3:+31100923 Msa0637830:intron
TATTATCTTACTGTTGGTCT+TGG 0.418139 4_3:-31101786 None:intergenic
ATATGATCACAGGGTGGTTC+AGG 0.430537 4_3:+31103341 Msa0637830:intron
ATGAAACCTGATTCCATGTC+CGG 0.431003 4_3:-31102283 None:intergenic
GCCTTAACAGGAACAACTAA+TGG 0.431469 4_3:+31102821 Msa0637830:CDS
TGTCAGCATATGAAGAAGAT+AGG 0.435363 4_3:+31101428 Msa0637830:CDS
GATTGTATTTCGATAGTTAG+TGG 0.441436 4_3:+31102222 Msa0637830:CDS
TTCTGCAGTATTGGAAGCTT+AGG 0.444981 4_3:+31102749 Msa0637830:intron
TAGTATTGATCTATGATTAT+GGG 0.445220 4_3:-31103416 None:intergenic
TCCTCAATGCTCTCCACAAT+AGG 0.452988 4_3:+31103673 Msa0637830:CDS
AGATGGTATATCCTATTCTT+GGG 0.459795 4_3:-31100987 None:intergenic
TAGTGTAAGACTCACCATAA+AGG 0.459802 4_3:-31101051 None:intergenic
CACATGAATTCCATCGGTGT+TGG 0.469737 4_3:-31102026 None:intergenic
GCTTTGTTCCGCTCTTGGCA+TGG 0.478055 4_3:-31103455 None:intergenic
CAAAACTTGGCTTAATTGCA+CGG 0.479353 4_3:-31103477 None:intergenic
ACATGAATTCCATCGGTGTT+GGG 0.481545 4_3:-31102025 None:intergenic
TGCATATGAGTAATGAAGAT+AGG 0.483118 4_3:-31100593 None:intergenic
ACAATATCCATTGCCTATTG+TGG 0.484295 4_3:-31103686 None:intergenic
TGGAATGAAGCATGTTCTAA+AGG 0.492280 4_3:+31100948 Msa0637830:CDS
AGCCCTGTTCACTACTACAT+TGG 0.494296 4_3:-31102798 None:intergenic
CTCTTCAAAGTCTCAAGGAA+TGG 0.495111 4_3:+31100749 Msa0637830:CDS
AGAGAAAAGTGTATCTCTAC+TGG 0.496144 4_3:-31100730 None:intergenic
GGAATGAAGCATGTTCTAAA+GGG 0.497809 4_3:+31100949 Msa0637830:CDS
ATGGTTAGTGTTGATGACTT+TGG 0.500293 4_3:+31100768 Msa0637830:CDS
AGATGGAAGAGATGATAGAG+AGG 0.500756 4_3:+31100800 Msa0637830:CDS
TCTCAAATTTCAAAGTTGAT+GGG 0.501852 4_3:+31101476 Msa0637830:CDS
GACTTTGGAGCAAGAGCAGA+TGG 0.502754 4_3:+31100783 Msa0637830:CDS
TCCTTGTGGTGCCCAAGAAT+AGG 0.505871 4_3:+31100976 Msa0637830:CDS
TCGGTGTTGGGACTATCCTC+TGG 0.506883 4_3:-31102013 None:intergenic
TTTCTCTGCAAGGAACGCTT+CGG 0.508888 4_3:-31103556 None:intergenic
GGTCTTGGTTCATCATTGCA+TGG 0.510820 4_3:-31101771 None:intergenic
TTAAGGCATTTAAGAAGGCA+TGG 0.511868 4_3:+31100928 Msa0637830:intron
ATAGATATCACTTGCGGACC+CGG 0.513667 4_3:+31102264 Msa0637830:CDS
TCAACATTGGCTTGATGAAG+TGG 0.522002 4_3:-31100636 None:intergenic
CTCAAATTTCAAAGTTGATG+GGG 0.530265 4_3:+31101477 Msa0637830:CDS
ATCACTTGCGGACCCGGACA+TGG 0.542140 4_3:+31102270 Msa0637830:CDS
GGTGGCACTTTCAATGGCAA+TGG 0.545267 4_3:+31101499 Msa0637830:CDS
ATGCAATGGCTCTTACATAG+TGG 0.549275 4_3:+31100611 Msa0637830:CDS
ATAAACTGTGATATTGGGAC+AGG 0.552284 4_3:+31102073 Msa0637830:CDS
GTGGCACTTTCAATGGCAAT+GGG 0.552925 4_3:+31101500 Msa0637830:CDS
TCAATCTACCATCATGTACA+TGG 0.568484 4_3:-31100668 None:intergenic
AATGTTAGATATGTAAATAG+AGG 0.571277 4_3:+31103641 Msa0637830:CDS
TTCAGCCACATGAATTCCAT+CGG 0.571554 4_3:-31102032 None:intergenic
TTCTAAAGGGTCTATCCTTG+TGG 0.572564 4_3:+31100962 Msa0637830:CDS
ATGAAGAAGATAGGCAACAC+TGG 0.573069 4_3:+31101437 Msa0637830:CDS
TGAAACCTGATTCCATGTCC+GGG 0.576277 4_3:-31102282 None:intergenic
CTAGAACCAGAAGGTGGTGG+AGG 0.582001 4_3:+31103599 Msa0637830:CDS
GCCTATTGTGGAGAGCATTG+AGG 0.588158 4_3:-31103674 None:intergenic
TGCAAGTATATTTCTCTGCA+AGG 0.588447 4_3:-31103566 None:intergenic
GAACATAGAAATGCAAAATG+TGG 0.591101 4_3:+31103388 Msa0637830:CDS
ATTCTAGAACCAGAAGGTGG+TGG 0.593437 4_3:+31103596 Msa0637830:CDS
AAGGCAGTATTTGGTTGACA+TGG 0.594353 4_3:-31101032 None:intergenic
GAGGATAGTCCCAACACCGA+TGG 0.596952 4_3:+31102016 Msa0637830:CDS
CGTTACTACCATGTACATGA+TGG 0.600317 4_3:+31100660 Msa0637830:CDS
TCCTATTCTTGGGCACCACA+AGG 0.600648 4_3:-31100977 None:intergenic
TTAGCTCTATGGAACAATTG+AGG 0.602214 4_3:+31101393 Msa0637830:intron
ATGGTAGTAACGTTCAACAT+TGG 0.605356 4_3:-31100649 None:intergenic
ATTGATTGTGAGAGCGCCAG+AGG 0.618757 4_3:+31101997 Msa0637830:CDS
AAACAGAGCCATGCCAAGAG+CGG 0.620744 4_3:+31103447 Msa0637830:CDS
TCTTCATTACTCATATGCAA+TGG 0.629492 4_3:+31100597 Msa0637830:CDS
TCTATGGAACAATTGAGGCA+TGG 0.634765 4_3:+31101398 Msa0637830:CDS
TCAAATTTCAAAGTTGATGG+GGG 0.636037 4_3:+31101478 Msa0637830:CDS
AATGCTACATGCATTTGCTG+TGG 0.640331 4_3:-31101944 None:intergenic
CAACACCGATGGAATTCATG+TGG 0.652375 4_3:+31102027 Msa0637830:CDS
TTCCAATGTAGTAGTGAACA+GGG 0.653388 4_3:+31102796 Msa0637830:CDS
CGAGCTATAGATATCACTTG+CGG 0.678372 4_3:+31102258 Msa0637830:CDS
GTGATTCTAGAACCAGAAGG+TGG 0.703740 4_3:+31103593 Msa0637830:CDS
GATGTGATTCTAGAACCAGA+AGG 0.739033 4_3:+31103590 Msa0637830:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATAACAATAACATATA+TGG + chr4_3:31100825-31100844 Msa0637830:intron 10.0%
!! TAAAAGAAAATATAACAAAT+TGG - chr4_3:31101599-31101618 None:intergenic 10.0%
!! AATATACTTGTAAAAATTTA+TGG - chr4_3:31101821-31101840 None:intergenic 10.0%
!! ACATTCAAAAAATAAATATT+TGG + chr4_3:31102132-31102151 Msa0637830:intron 10.0%
!!! AACATATATATTTTTTTTTG+AGG + chr4_3:31102484-31102503 Msa0637830:intron 10.0%
!!! ACATATATATTTTTTTTTGA+GGG + chr4_3:31102485-31102504 Msa0637830:intron 10.0%
!!! TTATTTTAAATTTTCTCTTT+TGG - chr4_3:31102578-31102597 None:intergenic 10.0%
!!! AAAAGAATGATTTCAAATTT+TGG + chr4_3:31101649-31101668 Msa0637830:intron 15.0%
!! AATGGAAAATAAATTTATGT+AGG + chr4_3:31101865-31101884 Msa0637830:intron 15.0%
!! CTAAATAAAAAACATTCAAT+TGG + chr4_3:31102158-31102177 Msa0637830:intron 15.0%
!!! ATTGATTAAAACTTTTTCTT+TGG + chr4_3:31102371-31102390 Msa0637830:intron 15.0%
!! AATTTCAACATATATGAAAA+AGG + chr4_3:31102512-31102531 Msa0637830:intron 15.0%
!! ATTTCAACATATATGAAAAA+GGG + chr4_3:31102513-31102532 Msa0637830:intron 15.0%
!!! ATTATATTTGACTTTTTAAC+CGG + chr4_3:31102647-31102666 Msa0637830:intron 15.0%
!! ATATAAAAAAATGTCTTAAC+TGG - chr4_3:31102685-31102704 None:intergenic 15.0%
!!! TTTTTTTATATTTGCTTTTC+TGG + chr4_3:31102694-31102713 Msa0637830:intron 15.0%
!! ATTTAGAAGAAATTAATAAG+TGG - chr4_3:31103187-31103206 None:intergenic 15.0%
!! TTTCTATGGTTATTAATTAA+AGG - chr4_3:31103223-31103242 None:intergenic 15.0%
!!! TTCATTTAATTTCTCCTTTA+AGG + chr4_3:31100911-31100930 Msa0637830:intron 20.0%
!!! TCAGTAATGCAATTTTAAAT+TGG - chr4_3:31101099-31101118 None:intergenic 20.0%
!!! TAATGAATTGATTTTGAACA+TGG - chr4_3:31101344-31101363 None:intergenic 20.0%
!! AGAAAATATAACAAATTGGA+AGG - chr4_3:31101595-31101614 None:intergenic 20.0%
!! ACATAATAAACTGTGATATT+GGG + chr4_3:31102068-31102087 Msa0637830:CDS 20.0%
!!! TTTACTTTCTTTTTTGTTGA+AGG + chr4_3:31102195-31102214 Msa0637830:intron 20.0%
!!! ATTAAAACTTTTTCTTTGGA+GGG + chr4_3:31102375-31102394 Msa0637830:intron 20.0%
!!! TAAAACTTTAAAGTTGAGAT+TGG + chr4_3:31102407-31102426 Msa0637830:intron 20.0%
!!! AAAACTTTAAAGTTGAGATT+GGG + chr4_3:31102408-31102427 Msa0637830:intron 20.0%
!! TAATATATATTCTGCAGTAT+TGG + chr4_3:31102740-31102759 Msa0637830:intron 20.0%
!!! ATTTTGAAAATTAGTCTGTT+AGG + chr4_3:31102884-31102903 Msa0637830:intron 20.0%
!!! TAGTATTGATCTATGATTAT+GGG - chr4_3:31103419-31103438 None:intergenic 20.0%
!! AATGTTAGATATGTAAATAG+AGG + chr4_3:31103641-31103660 Msa0637830:CDS 20.0%
!! AAAACAAAACATCAACGTTT+TGG + chr4_3:31100693-31100712 Msa0637830:CDS 25.0%
! CGTAATTAACTGAATTATTG+AGG - chr4_3:31101208-31101227 None:intergenic 25.0%
! TTCAGTTAATTACGTTACTA+TGG + chr4_3:31101214-31101233 Msa0637830:intron 25.0%
! TTACGTTACTATGGATAAAT+CGG + chr4_3:31101223-31101242 Msa0637830:intron 25.0%
! TTACTTTGTGAACTAATCTA+TGG - chr4_3:31101272-31101291 None:intergenic 25.0%
!! TTGATTTTGAACATGGTATA+AGG - chr4_3:31101337-31101356 None:intergenic 25.0%
!! TCTCAAATTTCAAAGTTGAT+GGG + chr4_3:31101476-31101495 Msa0637830:CDS 25.0%
! AAAACTTACAAGGTTATTGT+TGG - chr4_3:31101557-31101576 None:intergenic 25.0%
!! AAAAGGTACAAAAACTTACA+AGG - chr4_3:31101567-31101586 None:intergenic 25.0%
! CAAATTGGAAGGAAAAAAAA+AGG - chr4_3:31101584-31101603 None:intergenic 25.0%
! TTATGAAAAATACTTGAGAG+AGG + chr4_3:31101626-31101645 Msa0637830:intron 25.0%
! AGAAGAGGGAAAATAAATTA+AGG - chr4_3:31101739-31101758 None:intergenic 25.0%
! GAAGAATATTATCTTACTGT+TGG - chr4_3:31101795-31101814 None:intergenic 25.0%
!! CTAATCGATTCATACTTTAA+TGG + chr4_3:31101847-31101866 Msa0637830:intron 25.0%
! GGAAAATAAATTTATGTAGG+CGG + chr4_3:31101868-31101887 Msa0637830:intron 25.0%
! ATTTGAGAGTAAAGAATCTA+AGG + chr4_3:31101912-31101931 Msa0637830:CDS 25.0%
! GACATAATAAACTGTGATAT+TGG + chr4_3:31102067-31102086 Msa0637830:CDS 25.0%
! CTCAATCTAAGAATTAAATG+AGG - chr4_3:31102326-31102345 None:intergenic 25.0%
!!! GATTAAAACTTTTTCTTTGG+AGG + chr4_3:31102374-31102393 Msa0637830:intron 25.0%
!! TAAGCTATTTGCCAAATTTT+AGG + chr4_3:31103020-31103039 Msa0637830:intron 25.0%
! ATAACCGATAAAACAAACAT+TGG + chr4_3:31103046-31103065 Msa0637830:intron 25.0%
!!! CTTTCCAATGTTTGTTTTAT+CGG - chr4_3:31103053-31103072 None:intergenic 25.0%
!!! GTATTTTGGTCAATTTGTAT+GGG - chr4_3:31103277-31103296 None:intergenic 25.0%
!!! AGTATTTTGGTCAATTTGTA+TGG - chr4_3:31103278-31103297 None:intergenic 25.0%
! ATATTGTAATAAAACTCACG+TGG - chr4_3:31103301-31103320 None:intergenic 25.0%
!!! GTAGTATTGATCTATGATTA+TGG - chr4_3:31103420-31103439 None:intergenic 25.0%
!!! TGATGTTTTTGTACAAAACT+TGG - chr4_3:31103493-31103512 None:intergenic 25.0%
! ATCATGAGAAGTGTGATAAT+TGG - chr4_3:31100570-31100589 None:intergenic 30.0%
TGCATATGAGTAATGAAGAT+AGG - chr4_3:31100596-31100615 None:intergenic 30.0%
TCTTCATTACTCATATGCAA+TGG + chr4_3:31100597-31100616 Msa0637830:CDS 30.0%
ACATATATGGCAACAAAAAC+AGG + chr4_3:31100838-31100857 Msa0637830:intron 30.0%
AGATGGTATATCCTATTCTT+GGG - chr4_3:31100990-31101009 None:intergenic 30.0%
!! AAAAAGTTATTGGCTTGAGA+TGG - chr4_3:31101007-31101026 None:intergenic 30.0%
TTCACAAAGTAAAGCTTAGT+GGG + chr4_3:31101280-31101299 Msa0637830:intron 30.0%
! ATTTTGAACATGGTATAAGG+AGG - chr4_3:31101334-31101353 None:intergenic 30.0%
GTCTCAAATTTCAAAGTTGA+TGG + chr4_3:31101475-31101494 Msa0637830:CDS 30.0%
!! CTCAAATTTCAAAGTTGATG+GGG + chr4_3:31101477-31101496 Msa0637830:CDS 30.0%
!! TCAAATTTCAAAGTTGATGG+GGG + chr4_3:31101478-31101497 Msa0637830:CDS 30.0%
! TATTATCTTACTGTTGGTCT+TGG - chr4_3:31101789-31101808 None:intergenic 30.0%
GATTGTATTTCGATAGTTAG+TGG + chr4_3:31102222-31102241 Msa0637830:CDS 30.0%
! ATCTATAGCTCGAACATTTT+TGG - chr4_3:31102250-31102269 None:intergenic 30.0%
ATGGAGTGAGAATAAAAACT+TGG + chr4_3:31102840-31102859 Msa0637830:CDS 30.0%
TTATGATTCCATATGATCAC+AGG + chr4_3:31103331-31103350 Msa0637830:intron 30.0%
TATGATTCCATATGATCACA+GGG + chr4_3:31103332-31103351 Msa0637830:intron 30.0%
GAACATAGAAATGCAAAATG+TGG + chr4_3:31103388-31103407 Msa0637830:CDS 30.0%
! GTTTTGTACAAAAACATCAG+AGG + chr4_3:31103494-31103513 Msa0637830:CDS 30.0%
ATGGTAGTAACGTTCAACAT+TGG - chr4_3:31100652-31100671 None:intergenic 35.0%
TCAATCTACCATCATGTACA+TGG - chr4_3:31100671-31100690 None:intergenic 35.0%
!! AACGTTTTGGTCACATTACT+AGG + chr4_3:31100706-31100725 Msa0637830:CDS 35.0%
! AGAGAAAAGTGTATCTCTAC+TGG - chr4_3:31100733-31100752 None:intergenic 35.0%
! CTTTTCTCTTCAAAGTCTCA+AGG + chr4_3:31100744-31100763 Msa0637830:CDS 35.0%
!! ATGGTTAGTGTTGATGACTT+TGG + chr4_3:31100768-31100787 Msa0637830:CDS 35.0%
!! CTCCTTTAAGGCATTTAAGA+AGG + chr4_3:31100923-31100942 Msa0637830:intron 35.0%
TGCCTTCTTAAATGCCTTAA+AGG - chr4_3:31100928-31100947 None:intergenic 35.0%
! TTAAGGCATTTAAGAAGGCA+TGG + chr4_3:31100928-31100947 Msa0637830:intron 35.0%
TGGAATGAAGCATGTTCTAA+AGG + chr4_3:31100948-31100967 Msa0637830:CDS 35.0%
! GGAATGAAGCATGTTCTAAA+GGG + chr4_3:31100949-31100968 Msa0637830:CDS 35.0%
GAGATGGTATATCCTATTCT+TGG - chr4_3:31100991-31101010 None:intergenic 35.0%
!! CTCAAGCCAATAACTTTTTC+AGG + chr4_3:31101008-31101027 Msa0637830:CDS 35.0%
CATGGACCTGAAAAAGTTAT+TGG - chr4_3:31101017-31101036 None:intergenic 35.0%
TCAACCAAATACTGCCTTTA+TGG + chr4_3:31101037-31101056 Msa0637830:CDS 35.0%
TAGTGTAAGACTCACCATAA+AGG - chr4_3:31101054-31101073 None:intergenic 35.0%
! GGTTTTTGTTGCATTACTGA+AGG - chr4_3:31101158-31101177 None:intergenic 35.0%
ACCCTCAATAACATTACTGA+CGG + chr4_3:31101175-31101194 Msa0637830:intron 35.0%
TCCGTCAGTAATGTTATTGA+GGG - chr4_3:31101179-31101198 None:intergenic 35.0%
TTCCGTCAGTAATGTTATTG+AGG - chr4_3:31101180-31101199 None:intergenic 35.0%
CAGATTTGTCAATTGAGTAC+TGG - chr4_3:31101249-31101268 None:intergenic 35.0%
GTTCACAAAGTAAAGCTTAG+TGG + chr4_3:31101279-31101298 Msa0637830:intron 35.0%
!! AACTCATCATGTTAGCTCTA+TGG + chr4_3:31101382-31101401 Msa0637830:intron 35.0%
!! TTAGCTCTATGGAACAATTG+AGG + chr4_3:31101393-31101412 Msa0637830:intron 35.0%
TGTCAGCATATGAAGAAGAT+AGG + chr4_3:31101428-31101447 Msa0637830:CDS 35.0%
TCAATGGCAATGGGAAAAAA+TGG + chr4_3:31101509-31101528 Msa0637830:CDS 35.0%
ATAAACTGTGATATTGGGAC+AGG + chr4_3:31102073-31102092 Msa0637830:CDS 35.0%
TTTCCAATGTAGTAGTGAAC+AGG + chr4_3:31102795-31102814 Msa0637830:CDS 35.0%
TTCCAATGTAGTAGTGAACA+GGG + chr4_3:31102796-31102815 Msa0637830:CDS 35.0%
TCCATTAGTTGTTCCTGTTA+AGG - chr4_3:31102825-31102844 None:intergenic 35.0%
AGTGAGAATAAAAACTTGGC+AGG + chr4_3:31102844-31102863 Msa0637830:CDS 35.0%
AAAACTTGGCAGGTAAAAGT+TGG + chr4_3:31102854-31102873 Msa0637830:intron 35.0%
TCGGTTATGCACCTAAAATT+TGG - chr4_3:31103034-31103053 None:intergenic 35.0%
TTGACAAATCTCCACTTTGT+TGG + chr4_3:31103097-31103116 Msa0637830:intron 35.0%
TGAAAAAAGGACCAACAAAG+TGG - chr4_3:31103111-31103130 None:intergenic 35.0%
!! ACGGTTTGGTCAATGAAAAA+AGG - chr4_3:31103124-31103143 None:intergenic 35.0%
GTTAGGTAGTTTGAACTAGA+CGG - chr4_3:31103143-31103162 None:intergenic 35.0%
AAGTGGATAAAACTTGTCAC+AGG - chr4_3:31103170-31103189 None:intergenic 35.0%
! AGGAGAAGAGCAATTTTCTA+TGG - chr4_3:31103237-31103256 None:intergenic 35.0%
!! AAAACTCACGTGGAGTATTT+TGG - chr4_3:31103291-31103310 None:intergenic 35.0%
CAAAACTTGGCTTAATTGCA+CGG - chr4_3:31103480-31103499 None:intergenic 35.0%
TGCAAGTATATTTCTCTGCA+AGG - chr4_3:31103569-31103588 None:intergenic 35.0%
TTGCAGAGAAATATACTTGC+AGG + chr4_3:31103568-31103587 Msa0637830:CDS 35.0%
ATGCAATGGCTCTTACATAG+TGG + chr4_3:31100611-31100630 Msa0637830:CDS 40.0%
!! TCAACATTGGCTTGATGAAG+TGG - chr4_3:31100639-31100658 None:intergenic 40.0%
CGTTACTACCATGTACATGA+TGG + chr4_3:31100660-31100679 Msa0637830:CDS 40.0%
CTCTTCAAAGTCTCAAGGAA+TGG + chr4_3:31100749-31100768 Msa0637830:CDS 40.0%
AGATGGAAGAGATGATAGAG+AGG + chr4_3:31100800-31100819 Msa0637830:CDS 40.0%
! TTCTAAAGGGTCTATCCTTG+TGG + chr4_3:31100962-31100981 Msa0637830:CDS 40.0%
AAGGCAGTATTTGGTTGACA+TGG - chr4_3:31101035-31101054 None:intergenic 40.0%
CTCACCATAAAGGCAGTATT+TGG - chr4_3:31101044-31101063 None:intergenic 40.0%
AGACCCTCTGTAATTACTGA+CGG + chr4_3:31101126-31101145 Msa0637830:intron 40.0%
AGACCGTCAGTAATTACAGA+GGG - chr4_3:31101132-31101151 None:intergenic 40.0%
TAGACCGTCAGTAATTACAG+AGG - chr4_3:31101133-31101152 None:intergenic 40.0%
TCTATGGAACAATTGAGGCA+TGG + chr4_3:31101398-31101417 Msa0637830:CDS 40.0%
ATGAAGAAGATAGGCAACAC+TGG + chr4_3:31101437-31101456 Msa0637830:CDS 40.0%
!! AATTTCAAAGTTGATGGGGG+TGG + chr4_3:31101481-31101500 Msa0637830:CDS 40.0%
ATGGCAATGGGAAAAAATGG+TGG + chr4_3:31101512-31101531 Msa0637830:CDS 40.0%
GGCATCATACGAAATTAGAG+AGG + chr4_3:31101670-31101689 Msa0637830:intron 40.0%
! AATGCTACATGCATTTGCTG+TGG - chr4_3:31101947-31101966 None:intergenic 40.0%
! ACATGAATTCCATCGGTGTT+GGG - chr4_3:31102028-31102047 None:intergenic 40.0%
TTCAGCCACATGAATTCCAT+CGG - chr4_3:31102035-31102054 None:intergenic 40.0%
CGAGCTATAGATATCACTTG+CGG + chr4_3:31102258-31102277 Msa0637830:CDS 40.0%
ATGAAACCTGATTCCATGTC+CGG - chr4_3:31102286-31102305 None:intergenic 40.0%
TAATGCTAACTGATGCCTCT+AGG + chr4_3:31102536-31102555 Msa0637830:intron 40.0%
AATGCTAACTGATGCCTCTA+GGG + chr4_3:31102537-31102556 Msa0637830:intron 40.0%
ATGTCTTAACTGGTGTCTCT+GGG - chr4_3:31102675-31102694 None:intergenic 40.0%
AATGTCTTAACTGGTGTCTC+TGG - chr4_3:31102676-31102695 None:intergenic 40.0%
! TTCTGCAGTATTGGAAGCTT+AGG + chr4_3:31102749-31102768 Msa0637830:intron 40.0%
GCCTTAACAGGAACAACTAA+TGG + chr4_3:31102821-31102840 Msa0637830:CDS 40.0%
GTAGTTTGAACTAGACGGTT+TGG - chr4_3:31103138-31103157 None:intergenic 40.0%
AACTTGTCACAGGAGTTGTT+AGG - chr4_3:31103160-31103179 None:intergenic 40.0%
!! GATGTGATTCTAGAACCAGA+AGG + chr4_3:31103590-31103609 Msa0637830:CDS 40.0%
GTGGCACTTTCAATGGCAAT+GGG + chr4_3:31101500-31101519 Msa0637830:CDS 45.0%
GGCTGTGATCAACAAGAAGA+GGG - chr4_3:31101753-31101772 None:intergenic 45.0%
TGGCTGTGATCAACAAGAAG+AGG - chr4_3:31101754-31101773 None:intergenic 45.0%
GGTCTTGGTTCATCATTGCA+TGG - chr4_3:31101774-31101793 None:intergenic 45.0%
CACATGAATTCCATCGGTGT+TGG - chr4_3:31102029-31102048 None:intergenic 45.0%
CAACACCGATGGAATTCATG+TGG + chr4_3:31102027-31102046 Msa0637830:CDS 45.0%
ATAGATATCACTTGCGGACC+CGG + chr4_3:31102264-31102283 Msa0637830:CDS 45.0%
TGAAACCTGATTCCATGTCC+GGG - chr4_3:31102285-31102304 None:intergenic 45.0%
TTCCTTAACTAGTGCCCTAG+AGG - chr4_3:31102554-31102573 None:intergenic 45.0%
AGCCCTGTTCACTACTACAT+TGG - chr4_3:31102801-31102820 None:intergenic 45.0%
!!! GGGAGTGAGCGTTTTTTGTT+AGG - chr4_3:31103257-31103276 None:intergenic 45.0%
GATTCCATATGATCACAGGG+TGG + chr4_3:31103335-31103354 Msa0637830:intron 45.0%
TGAACCACCCTGTGATCATA+TGG - chr4_3:31103342-31103361 None:intergenic 45.0%
ATATGATCACAGGGTGGTTC+AGG + chr4_3:31103341-31103360 Msa0637830:intron 45.0%
TTTCTCTGCAAGGAACGCTT+CGG - chr4_3:31103559-31103578 None:intergenic 45.0%
!! GTGATTCTAGAACCAGAAGG+TGG + chr4_3:31103593-31103612 Msa0637830:CDS 45.0%
!! ATTCTAGAACCAGAAGGTGG+TGG + chr4_3:31103596-31103615 Msa0637830:CDS 45.0%
!! GACTTTGGAGCAAGAGCAGA+TGG + chr4_3:31100783-31100802 Msa0637830:CDS 50.0%
TCCTTGTGGTGCCCAAGAAT+AGG + chr4_3:31100976-31100995 Msa0637830:CDS 50.0%
TCCTATTCTTGGGCACCACA+AGG - chr4_3:31100980-31100999 None:intergenic 50.0%
GGTGGCACTTTCAATGGCAA+TGG + chr4_3:31101499-31101518 Msa0637830:CDS 50.0%
!! ATTGATTGTGAGAGCGCCAG+AGG + chr4_3:31101997-31102016 Msa0637830:CDS 50.0%
!! TGCCTCTAGGGCACTAGTTA+AGG + chr4_3:31102549-31102568 Msa0637830:intron 50.0%
AAACAGAGCCATGCCAAGAG+CGG + chr4_3:31103447-31103466 Msa0637830:CDS 50.0%
GATGGGGGTGGCACTTTCAA+TGG + chr4_3:31101493-31101512 Msa0637830:CDS 55.0%
!! TCGGTGTTGGGACTATCCTC+TGG - chr4_3:31102016-31102035 None:intergenic 55.0%
GAGGATAGTCCCAACACCGA+TGG + chr4_3:31102016-31102035 Msa0637830:CDS 55.0%
TAACTGGTGTCTCTGGGCAC+CGG - chr4_3:31102669-31102688 None:intergenic 55.0%
GTGAACAGGGCTGCCTTAAC+AGG + chr4_3:31102809-31102828 Msa0637830:CDS 55.0%
! GCTCTTGGCATGGCTCTGTT+TGG - chr4_3:31103448-31103467 None:intergenic 55.0%
! GCTTTGTTCCGCTCTTGGCA+TGG - chr4_3:31103458-31103477 None:intergenic 55.0%
! CTAGAACCAGAAGGTGGTGG+AGG + chr4_3:31103599-31103618 Msa0637830:CDS 55.0%
GTAGTTCCTCCACCACCTTC+TGG - chr4_3:31103608-31103627 None:intergenic 55.0%
ATCACTTGCGGACCCGGACA+TGG + chr4_3:31102270-31102289 Msa0637830:CDS 60.0%
!! GCACGGCTTTGTTCCGCTCT+TGG - chr4_3:31103463-31103482 None:intergenic 60.0%
GCGGACCCGGACATGGAATC+AGG + chr4_3:31102277-31102296 Msa0637830:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 31100552 31103694 31100552 ID=Msa0637830;Name=Msa0637830
chr4_3 mRNA 31100552 31103694 31100552 ID=Msa0637830-mRNA-1;Parent=Msa0637830;Name=Msa0637830-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.71|0.5|1|1|1|8|0|444
chr4_3 exon 31100552 31100821 31100552 ID=Msa0637830-mRNA-1:exon:7287;Parent=Msa0637830-mRNA-1
chr4_3 exon 31100933 31101058 31100933 ID=Msa0637830-mRNA-1:exon:7288;Parent=Msa0637830-mRNA-1
chr4_3 exon 31101397 31101567 31101397 ID=Msa0637830-mRNA-1:exon:7289;Parent=Msa0637830-mRNA-1
chr4_3 exon 31101771 31101797 31101771 ID=Msa0637830-mRNA-1:exon:7290;Parent=Msa0637830-mRNA-1
chr4_3 exon 31101887 31102094 31101887 ID=Msa0637830-mRNA-1:exon:7291;Parent=Msa0637830-mRNA-1
chr4_3 exon 31102217 31102298 31102217 ID=Msa0637830-mRNA-1:exon:7292;Parent=Msa0637830-mRNA-1
chr4_3 exon 31102757 31102865 31102757 ID=Msa0637830-mRNA-1:exon:7293;Parent=Msa0637830-mRNA-1
chr4_3 exon 31103353 31103694 31103353 ID=Msa0637830-mRNA-1:exon:7294;Parent=Msa0637830-mRNA-1
chr4_3 CDS 31100552 31100821 31100552 ID=Msa0637830-mRNA-1:cds;Parent=Msa0637830-mRNA-1
chr4_3 CDS 31100933 31101058 31100933 ID=Msa0637830-mRNA-1:cds;Parent=Msa0637830-mRNA-1
chr4_3 CDS 31101397 31101567 31101397 ID=Msa0637830-mRNA-1:cds;Parent=Msa0637830-mRNA-1
chr4_3 CDS 31101771 31101797 31101771 ID=Msa0637830-mRNA-1:cds;Parent=Msa0637830-mRNA-1
chr4_3 CDS 31101887 31102094 31101887 ID=Msa0637830-mRNA-1:cds;Parent=Msa0637830-mRNA-1
chr4_3 CDS 31102217 31102298 31102217 ID=Msa0637830-mRNA-1:cds;Parent=Msa0637830-mRNA-1
chr4_3 CDS 31102757 31102865 31102757 ID=Msa0637830-mRNA-1:cds;Parent=Msa0637830-mRNA-1
chr4_3 CDS 31103353 31103694 31103353 ID=Msa0637830-mRNA-1:cds;Parent=Msa0637830-mRNA-1
Gene Sequence

>Msa0637830

ATGTATCAACAAAAGCCAATTATCACACTTCTCATGATATTCCTATCTTCATTACTCATATGCAATGGCTCTTACATAGTGGAACCACTTCATCAAGCCAATGTTGAACGTTACTACCATGTACATGATGGTAGATTGATCAAAACAAAACATCAACGTTTTGGTCACATTACTAGGACCAGTAGAGATACACTTTTCTCTTCAAAGTCTCAAGGAATGGTTAGTGTTGATGACTTTGGAGCAAGAGCAGATGGAAGAGATGATAGAGAGGCATTTAAGAAGGCATGGAATGAAGCATGTTCTAAAGGGTCTATCCTTGTGGTGCCCAAGAATAGGATATACCATCTCAAGCCAATAACTTTTTCAGGTCCATGTCAACCAAATACTGCCTTTATGCTCTATGGAACAATTGAGGCATGGTCTCAAATGTCAGCATATGAAGAAGATAGGCAACACTGGATTGTGTTTGATAGTGTCTCAAATTTCAAAGTTGATGGGGGTGGCACTTTCAATGGCAATGGGAAAAAATGGTGGCAAAACTCATGCAAATATTCCAACAATAACCTTCCATGCAATGATGAACCAAGACCAACAGCGGTGACATTCTATGATTGCAAAAATTTGAGAGTAAAGAATCTAAGGTTCAAAGATCCACAGCAAATGCATGTAGCATTTGAGAGTTGCTTCAATGTGTTTGTTTCGAAATTGATTGTGAGAGCGCCAGAGGATAGTCCCAACACCGATGGAATTCATGTGGCTGAAACACAAAATATTGACATAATAAACTGTGATATTGGGACAGGTGATGATTGTATTTCGATAGTTAGTGGATCCAAAAATGTTCGAGCTATAGATATCACTTGCGGACCCGGACATGGAATCAGTATTGGAAGCTTAGGAGCTGATAACTCAGAAGCTGAAGTTTCCAATGTAGTAGTGAACAGGGCTGCCTTAACAGGAACAACTAATGGAGTGAGAATAAAAACTTGGCAGGGTGGTTCAGGATATGCAAGAAACATCAAATTTATGAACATAGAAATGCAAAATGTGGCAAATCCCATAATCATAGATCAATACTACTGCGACCAAACAGAGCCATGCCAAGAGCGGAACAAAGCCGTGCAATTAAGCCAAGTTTTGTACAAAAACATCAGAGGAACGAGTGCTTCAGAAGTAGCGATCAAATTTAATTGCAGCCGAAGCGTTCCTTGCAGAGAAATATACTTGCAGGATGTGATTCTAGAACCAGAAGGTGGTGGAGGAACTACTGCAACATGTGAGAATGTTAGATATGTAAATAGAGGAAAGTTTTATCCTCAATGCTCTCCACAATAG
Protein sequence

>Msa0637830

MYQQKPIITLLMIFLSSLLICNGSYIVEPLHQANVERYYHVHDGRLIKTKHQRFGHITRTSRDTLFSSKSQGMVSVDDFGARADGRDDREAFKKAWNEACSKGSILVVPKNRIYHLKPITFSGPCQPNTAFMLYGTIEAWSQMSAYEEDRQHWIVFDSVSNFKVDGGGTFNGNGKKWWQNSCKYSNNNLPCNDEPRPTAVTFYDCKNLRVKNLRFKDPQQMHVAFESCFNVFVSKLIVRAPEDSPNTDGIHVAETQNIDIINCDIGTGDDCISIVSGSKNVRAIDITCGPGHGISIGSLGADNSEAEVSNVVVNRAALTGTTNGVRIKTWQGGSGYARNIKFMNIEMQNVANPIIIDQYYCDQTEPCQERNKAVQLSQVLYKNIRGTSASEVAIKFNCSRSVPCREIYLQDVILEPEGGGGTTATCENVRYVNRGKFYPQCSPQ*