AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1202800


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202800 MtrunA17_Chr8g0373201 97.771 314 7 0 1 314 1 314 0.0 635
Msa1202800 MtrunA17_Chr5g0404141 64.401 309 107 1 1 309 1 306 9.40e-150 423
Msa1202800 MtrunA17_Chr5g0404211 62.460 309 107 1 1 309 1 300 1.34e-147 417
Msa1202800 MtrunA17_Chr5g0404161 61.187 219 82 1 1 219 11 226 1.04e-96 285
Msa1202800 MtrunA17_Chr3g0136411 37.676 284 158 5 26 305 32 300 8.61e-60 193
Msa1202800 MtrunA17_Chr3g0123881 34.483 290 172 4 19 305 24 298 1.24e-52 175
Msa1202800 MtrunA17_Chr2g0279171 33.968 315 175 9 2 305 9 301 8.61e-50 168
Msa1202800 MtrunA17_Chr5g0426241 31.104 299 176 6 19 307 22 300 2.70e-46 158
Msa1202800 MtrunA17_Chr5g0404171 72.727 88 24 0 220 307 1 88 1.39e-43 145
Msa1202800 MtrunA17_Chr8g0382001 34.375 128 69 1 20 147 23 135 2.03e-20 85.9
Msa1202800 MtrunA17_Chr8g0381981 38.144 97 56 3 212 305 61 156 2.11e-12 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1202800 AT2G18360.1 68.051 313 99 1 1 312 1 313 7.70e-163 456
Msa1202800 AT4G36610.1 66.349 315 105 1 1 315 1 314 1.92e-152 430
Msa1202800 AT2G18360.2 67.279 272 88 1 1 271 1 272 2.33e-138 392
Msa1202800 AT5G21950.1 36.054 294 170 6 19 309 23 301 4.63e-56 184
Msa1202800 AT5G21950.6 36.054 294 170 6 19 309 75 353 2.16e-55 184
Msa1202800 AT4G33180.1 33.898 295 179 5 16 305 21 304 1.44e-54 180
Msa1202800 AT1G78210.1 34.667 300 167 7 17 305 20 301 3.71e-52 174
Msa1202800 AT5G21950.7 35.985 264 155 5 11 271 15 267 3.04e-50 168
Msa1202800 AT4G39955.1 32.215 298 173 7 19 307 22 299 8.41e-46 158
Msa1202800 AT5G09430.1 30.671 313 190 7 3 305 12 307 1.43e-43 152
Msa1202800 AT1G72620.1 30.847 295 175 9 21 305 56 331 1.21e-42 150
Msa1202800 AT1G17430.1 30.519 308 177 10 15 307 46 331 9.66e-40 142
Msa1202800 AT4G33180.2 34.783 207 121 3 16 219 21 216 7.67e-36 129
Msa1202800 AT5G21950.3 34.906 212 126 3 11 221 15 215 7.24e-35 126
Msa1202800 AT5G21950.2 34.906 212 126 3 11 221 15 215 7.24e-35 126
Msa1202800 AT5G21950.5 34.906 212 126 3 11 221 67 267 2.11e-34 127
Msa1202800 AT5G21950.4 34.906 212 126 3 11 221 67 267 2.11e-34 127

Find 66 sgRNAs with CRISPR-Local

Find 269 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATATTACCTGGGTGAAATT+TGG 0.139926 8_1:-56487854 None:intergenic
TTGTTACCTAATTCTGTTAA+AGG 0.173805 8_1:+56485181 Msa1202800:CDS
AGAACAACCACGGGTTTATT+TGG 0.190190 8_1:-56484800 None:intergenic
TTAAGTCCTTTAACAGAATT+AGG 0.213404 8_1:-56485187 None:intergenic
CTTAGCTTAATGAATTAAAT+TGG 0.220300 8_1:+56489273 Msa1202800:three_prime_UTR
TCATAATTTGCCCTGGTTAT+TGG 0.220419 8_1:+56489249 Msa1202800:three_prime_UTR
TACAGAGGATACATCTTCTA+TGG 0.263240 8_1:+56488438 Msa1202800:intron
GAAGTTTATTGCTTCCTTCT+TGG 0.277735 8_1:+56489178 Msa1202800:CDS
GGTTATATCCGGATCCATTT+TGG 0.286701 8_1:+56485093 Msa1202800:CDS
TCCTGAATTGGTTCAAGCTT+TGG 0.318085 8_1:+56485072 Msa1202800:CDS
ACCAAAGCTTGAACCAATTC+AGG 0.325503 8_1:-56485073 None:intergenic
TGTAGGTGATGTTCACAAAT+AGG 0.341498 8_1:+56487774 Msa1202800:intron
AGAATCAGTCATAGCCAAAA+TGG 0.352662 8_1:-56485107 None:intergenic
GTTCCAGATCTTCTATTCTT+CGG 0.384407 8_1:+56484902 Msa1202800:CDS
ACGAACTAAAATTCAAATAT+CGG 0.385186 8_1:-56489403 None:intergenic
TAGGTTTCAAGCAGAGTGTT+TGG 0.386443 8_1:+56484958 Msa1202800:CDS
CCCGTGGTTGTTCTAGTACA+TGG 0.391325 8_1:+56484809 Msa1202800:CDS
AGTGTTTGGCCATTGCTTTA+AGG 0.392518 8_1:+56484972 Msa1202800:CDS
GATGCATGGGCTAATGAAAA+TGG 0.402441 8_1:+56484658 Msa1202800:CDS
GTTCAAGCTTTGGTTATATC+CGG 0.415318 8_1:+56485082 Msa1202800:CDS
GAACGAGGTGAGCTATTAGA+TGG 0.417602 8_1:+56487800 Msa1202800:CDS
CCTCCGAAGAATAGAAGATC+TGG 0.418433 8_1:-56484905 None:intergenic
TTCATTAGCCCATGCATCAA+TGG 0.424084 8_1:-56484653 None:intergenic
AGCTGGTCACCTTGTTCACT+TGG 0.434706 8_1:+56489124 Msa1202800:CDS
GCCATTGCTTTAAGGAAACT+TGG 0.437943 8_1:+56484980 Msa1202800:CDS
GTGAGTTCATTGCAAGAACT+TGG 0.443234 8_1:+56485136 Msa1202800:CDS
GGCTGAGATGTATCCTGAAT+TGG 0.452248 8_1:+56485060 Msa1202800:CDS
AAGTCTTTGTGTAAACGATC+CGG 0.465183 8_1:-56485250 None:intergenic
ACTAAAATTCAAATATCGGC+TGG 0.465909 8_1:-56489399 None:intergenic
GGCTTTGTTATGGTCTCTGA+AGG 0.474712 8_1:-56484740 None:intergenic
TGATTCTATCTCTACTGTGT+AGG 0.492993 8_1:-56484693 None:intergenic
GGAGAGGGCACAACGTTTGA+AGG 0.498839 8_1:+56489092 Msa1202800:CDS
TACACAGTAGAGATAGAATC+AGG 0.501725 8_1:+56484695 Msa1202800:CDS
GTCTTGATTAACTTATGTGA+AGG 0.504688 8_1:-56489348 None:intergenic
ACAGAGGATACATCTTCTAT+GGG 0.506859 8_1:+56488439 Msa1202800:intron
AGTCATAGCCAAAATGGATC+CGG 0.512553 8_1:-56485101 None:intergenic
GATTCTATCTCTACTGTGTA+GGG 0.513782 8_1:-56484692 None:intergenic
TTCAACTTCATAATTTGCCC+TGG 0.518902 8_1:+56489242 Msa1202800:three_prime_UTR
TTTGAAGGTATAAAGAAAGC+TGG 0.532621 8_1:+56489107 Msa1202800:CDS
TCTTGATTAACTTATGTGAA+GGG 0.535163 8_1:-56489347 None:intergenic
TTAAGCTAAGACCAATAACC+AGG 0.539160 8_1:-56489260 None:intergenic
AAACACTCTGCTTGAAACCT+AGG 0.543493 8_1:-56484956 None:intergenic
ACCAAGTTTCCTTAAAGCAA+TGG 0.556350 8_1:-56484981 None:intergenic
AGTCTTTGTGTAAACGATCC+GGG 0.560029 8_1:-56485249 None:intergenic
GTATCAAATGACAGGCAACT+AGG 0.560612 8_1:+56489071 Msa1202800:intron
CCAGATCTTCTATTCTTCGG+AGG 0.563133 8_1:+56484905 Msa1202800:CDS
CCATGTTACTATTCCTTCAG+AGG 0.572953 8_1:-56484837 None:intergenic
TGCTTCATTTGACGCCAAGA+AGG 0.573642 8_1:-56489192 None:intergenic
CATGGGCTAATGAAAATGGC+AGG 0.587155 8_1:+56484662 Msa1202800:CDS
AAATGACAGGCAACTAGGAG+AGG 0.595528 8_1:+56489076 Msa1202800:intron
ATGGTCGCTCCAAGTGAACA+AGG 0.615675 8_1:-56489133 None:intergenic
GTAACATGGCAGTTTCAAGT+TGG 0.615961 8_1:+56484851 Msa1202800:CDS
CCTCTGAAGGAATAGTAACA+TGG 0.616910 8_1:+56484837 Msa1202800:CDS
CCATGTACTAGAACAACCAC+GGG 0.619067 8_1:-56484809 None:intergenic
AATCATCATGGTGAATCTTG+TGG 0.619193 8_1:+56484619 Msa1202800:exon
GTGAGAGATAGAAATCATCA+TGG 0.630073 8_1:+56484607 Msa1202800:exon
TTTACACAAAGACTTTCTTG+AGG 0.635532 8_1:+56485258 Msa1202800:CDS
ACCATGTACTAGAACAACCA+CGG 0.639608 8_1:-56484810 None:intergenic
TGCAAAACCAAATAAACCCG+TGG 0.661215 8_1:+56484793 Msa1202800:CDS
AATGACAGGCAACTAGGAGA+GGG 0.661901 8_1:+56489077 Msa1202800:intron
TAAGCTAAGACCAATAACCA+GGG 0.681445 8_1:-56489259 None:intergenic
AGACATCTATTGTAGACACA+TGG 0.683319 8_1:-56489152 None:intergenic
CAACATTCCAAATTTCACCC+AGG 0.683392 8_1:+56487847 Msa1202800:CDS
CAGAGGATACATCTTCTATG+GGG 0.694300 8_1:+56488440 Msa1202800:intron
ACAAAACAGAAAGATCACCT+AGG 0.708866 8_1:+56484939 Msa1202800:CDS
TTCACAAATAGGAAAGAACG+AGG 0.731188 8_1:+56487785 Msa1202800:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTAATTTTTATTTTATTT+TGG + chr8_1:56485400-56485419 Msa1202800:intron 0.0%
!!! ATTTTATTGAGAAAAAAAAA+TGG - chr8_1:56485304-56485323 None:intergenic 10.0%
!! ATTTGTTTGATATATAAATT+TGG + chr8_1:56487934-56487953 Msa1202800:intron 10.0%
!! AATAAGAATTCTAAATATTT+GGG - chr8_1:56488139-56488158 None:intergenic 10.0%
!! AAATAAGAATTCTAAATATT+TGG - chr8_1:56488140-56488159 None:intergenic 10.0%
!!! AAATATTTAGAATTCTTATT+TGG + chr8_1:56488139-56488158 Msa1202800:intron 10.0%
!! TAAAAAAATACTTATGAATA+AGG + chr8_1:56488254-56488273 Msa1202800:intron 10.0%
!! TTGATTAAACAAATGAAATT+TGG + chr8_1:56485327-56485346 Msa1202800:intron 15.0%
!! TGATTAAACAAATGAAATTT+GGG + chr8_1:56485328-56485347 Msa1202800:intron 15.0%
!! AAATAAAATGTTGTTATAGT+TGG + chr8_1:56485480-56485499 Msa1202800:intron 15.0%
!!! TGTTACTACTATTTTAAAAA+TGG - chr8_1:56486091-56486110 None:intergenic 15.0%
!!! TTTTTTTTTGAGAGAATTTA+TGG + chr8_1:56486184-56486203 Msa1202800:intron 15.0%
!!! ATTGTCAATATATGAATTTT+TGG - chr8_1:56486368-56486387 None:intergenic 15.0%
!! CTAACATACAAAATTTAATT+TGG - chr8_1:56486512-56486531 None:intergenic 15.0%
!!! TTTTTATACTCCATTATTTA+TGG - chr8_1:56486634-56486653 None:intergenic 15.0%
!! TTACGTAATAATAATAAAGT+TGG + chr8_1:56486710-56486729 Msa1202800:intron 15.0%
!!! GACATTATTACTTTATTTTT+GGG - chr8_1:56486744-56486763 None:intergenic 15.0%
!!! AGACATTATTACTTTATTTT+TGG - chr8_1:56486745-56486764 None:intergenic 15.0%
!! GAATCTAAAAAGTAAAAATT+TGG + chr8_1:56486919-56486938 Msa1202800:intron 15.0%
!! TAAAAATTTGGTTATAATAG+TGG + chr8_1:56486931-56486950 Msa1202800:intron 15.0%
!! ATTATATATTGAGTTTGATA+TGG + chr8_1:56487347-56487366 Msa1202800:intron 15.0%
!! GAAATTATAAATTTCAAACA+TGG - chr8_1:56487539-56487558 None:intergenic 15.0%
!! AGAGATAAAAAAAAATAACA+TGG - chr8_1:56487597-56487616 None:intergenic 15.0%
!! ATGAAATTAAAAAAGGATTA+AGG - chr8_1:56487667-56487686 None:intergenic 15.0%
!!! TTCATAAGTATTTTTTTAGT+GGG - chr8_1:56488252-56488271 None:intergenic 15.0%
!!! ATTCATAAGTATTTTTTTAG+TGG - chr8_1:56488253-56488272 None:intergenic 15.0%
!!! AAATGATCAAATTTTCAAAT+TGG + chr8_1:56488466-56488485 Msa1202800:CDS 15.0%
!!! TTAGTTTTTATTGATTTTGT+TGG - chr8_1:56488787-56488806 None:intergenic 15.0%
!!! CTGTATATTTTAATTTTCTT+TGG + chr8_1:56489318-56489337 Msa1202800:three_prime_UTR 15.0%
!! GATTAAACAAATGAAATTTG+GGG + chr8_1:56485329-56485348 Msa1202800:intron 20.0%
!! AATACAATGTCAAAATATGA+AGG - chr8_1:56485383-56485402 None:intergenic 20.0%
!!! TTAAGCTTTAAAAAATTGCA+TGG - chr8_1:56485596-56485615 None:intergenic 20.0%
!! ATAAAAAAGTCATGTTTGTT+GGG - chr8_1:56486016-56486035 None:intergenic 20.0%
!! AATAAAAAAGTCATGTTTGT+TGG - chr8_1:56486017-56486036 None:intergenic 20.0%
!!! ACTTTTTTTCTTGAGATTTA+TGG + chr8_1:56486149-56486168 Msa1202800:intron 20.0%
!!! AATTTTGTATGTTAGTAGAT+AGG + chr8_1:56486517-56486536 Msa1202800:intron 20.0%
!! ATGGAGTATAAAAATAAGAA+TGG + chr8_1:56486640-56486659 Msa1202800:intron 20.0%
!! TGGAGTATAAAAATAAGAAT+GGG + chr8_1:56486641-56486660 Msa1202800:intron 20.0%
!! CATTTAATAAATGATGTATG+TGG - chr8_1:56486900-56486919 None:intergenic 20.0%
!! GTATAGTTTACGTTATATTT+AGG + chr8_1:56486963-56486982 Msa1202800:intron 20.0%
!! AAATTCATCAGATAAATAAG+TGG + chr8_1:56487051-56487070 Msa1202800:intron 20.0%
!!! TTTTTTTATCTCTTAAGCTT+AGG + chr8_1:56487604-56487623 Msa1202800:intron 20.0%
!! TGAGAGAATGAAATTAAAAA+AGG - chr8_1:56487674-56487693 None:intergenic 20.0%
!! GTAACAAAATTATATTACCT+GGG - chr8_1:56487867-56487886 None:intergenic 20.0%
!! TGTAACAAAATTATATTACC+TGG - chr8_1:56487868-56487887 None:intergenic 20.0%
!!! GGTAATATAATTTTGTTACA+AGG + chr8_1:56487868-56487887 Msa1202800:intron 20.0%
!! GGAATTTCAAATTAATGTTT+GGG - chr8_1:56488059-56488078 None:intergenic 20.0%
!! TAGAAATATCAAAAGAAATG+TGG - chr8_1:56488167-56488186 None:intergenic 20.0%
!!! TATAATGTCATGAATTTTGA+AGG - chr8_1:56488195-56488214 None:intergenic 20.0%
!! TATATATGATCAAAGCAATA+AGG - chr8_1:56488384-56488403 None:intergenic 20.0%
!!! CTTTCTGTATTTTTTTCAAA+CGG + chr8_1:56488601-56488620 Msa1202800:intron 20.0%
!! CTTAGCTTAATGAATTAAAT+TGG + chr8_1:56489273-56489292 Msa1202800:three_prime_UTR 20.0%
!! ACGAACTAAAATTCAAATAT+CGG - chr8_1:56489406-56489425 None:intergenic 20.0%
!! AGGAACAACAATGAATTTTT+GGG + chr8_1:56484715-56484734 Msa1202800:CDS 25.0%
!!! TTTTTTCTTTGGCTTTGTTA+TGG - chr8_1:56484753-56484772 None:intergenic 25.0%
!! GGTTTTTCTTCTTTTTTCTT+TGG - chr8_1:56484764-56484783 None:intergenic 25.0%
! GTTGAAAAATGTATTGTTGT+TGG + chr8_1:56485004-56485023 Msa1202800:CDS 25.0%
! TTGTTACCTAATTCTGTTAA+AGG + chr8_1:56485181-56485200 Msa1202800:CDS 25.0%
! TTAAGTCCTTTAACAGAATT+AGG - chr8_1:56485190-56485209 None:intergenic 25.0%
! AAAAAAATGGTGCAAAACTA+AGG - chr8_1:56485291-56485310 None:intergenic 25.0%
! TTTATAGAATTTCACACGTA+AGG + chr8_1:56485448-56485467 Msa1202800:intron 25.0%
! AAGACTAATAAATGACTTCA+TGG - chr8_1:56485530-56485549 None:intergenic 25.0%
!! AAATGCTTTCTTCTTTTGAA+AGG + chr8_1:56485664-56485683 Msa1202800:intron 25.0%
!!! GATTGCATTTTATTTAGACT+TGG - chr8_1:56485720-56485739 None:intergenic 25.0%
! GAAGAAATTAATGAAGTGAT+GGG - chr8_1:56486046-56486065 None:intergenic 25.0%
! TGAAGAAATTAATGAAGTGA+TGG - chr8_1:56486047-56486066 None:intergenic 25.0%
! TTCATTAATTTCTTCATTGC+TGG + chr8_1:56486051-56486070 Msa1202800:intron 25.0%
!! ACTTATTCAAGTGCATTTTA+GGG - chr8_1:56486423-56486442 None:intergenic 25.0%
!! TACTTATTCAAGTGCATTTT+AGG - chr8_1:56486424-56486443 None:intergenic 25.0%
! GATAACATGACCATAAATAA+TGG + chr8_1:56486621-56486640 Msa1202800:intron 25.0%
! TGAAACAAATTAAAGCAATG+AGG + chr8_1:56486676-56486695 Msa1202800:intron 25.0%
! CATTCAATAAATGATGTATG+TGG + chr8_1:56486861-56486880 Msa1202800:intron 25.0%
!!! AATAAATTTGCTATAGTCGA+GGG - chr8_1:56487123-56487142 None:intergenic 25.0%
!!! AAATAAATTTGCTATAGTCG+AGG - chr8_1:56487124-56487143 None:intergenic 25.0%
! AGATTAATAAGCCTGATTAT+TGG - chr8_1:56487186-56487205 None:intergenic 25.0%
! AGACATGAAAAAAGAAAACT+TGG + chr8_1:56487376-56487395 Msa1202800:intron 25.0%
!!! CACGTTTAAAATTTTTGAGT+TGG + chr8_1:56487412-56487431 Msa1202800:intron 25.0%
!!! AAAATTTTTGAGTTGGTGAA+TGG + chr8_1:56487419-56487438 Msa1202800:intron 25.0%
! ATAATGAAATTGATTGCACA+TGG + chr8_1:56487452-56487471 Msa1202800:intron 25.0%
! TATATATGACTTTAACTACG+TGG + chr8_1:56487746-56487765 Msa1202800:intron 25.0%
! GGGAATTTCAAATTAATGTT+TGG - chr8_1:56488060-56488079 None:intergenic 25.0%
! AATTCCCTCATTTCATAAAT+TGG + chr8_1:56488073-56488092 Msa1202800:intron 25.0%
! TAGACCAATTTATGAAATGA+GGG - chr8_1:56488080-56488099 None:intergenic 25.0%
! ATAGACCAATTTATGAAATG+AGG - chr8_1:56488081-56488100 None:intergenic 25.0%
! ATATTTGGGTCAAAACTAAA+AGG - chr8_1:56488125-56488144 None:intergenic 25.0%
! TGTAAAATACAACCAAAATG+TGG - chr8_1:56488349-56488368 None:intergenic 25.0%
! ATGTTGTTACTCATTAATCA+TGG + chr8_1:56488412-56488431 Msa1202800:intron 25.0%
! CAGAAAGAATATTATTGTCA+TGG - chr8_1:56488588-56488607 None:intergenic 25.0%
! TAGAGAAGAATATATCAAGT+GGG - chr8_1:56489008-56489027 None:intergenic 25.0%
! ATAGAGAAGAATATATCAAG+TGG - chr8_1:56489009-56489028 None:intergenic 25.0%
! TTTCTTATGTATCAAATGAC+AGG + chr8_1:56489063-56489082 Msa1202800:intron 25.0%
! TCTTGATTAACTTATGTGAA+GGG - chr8_1:56489350-56489369 None:intergenic 25.0%
! CAGGAACAACAATGAATTTT+TGG + chr8_1:56484714-56484733 Msa1202800:CDS 30.0%
!!! TTTGGTTTTGCAGTGATTTT+GGG - chr8_1:56484785-56484804 None:intergenic 30.0%
!!! ATTTGGTTTTGCAGTGATTT+TGG - chr8_1:56484786-56484805 None:intergenic 30.0%
!!! ATTGTTGTTGGTTTTAGCTA+TGG + chr8_1:56485016-56485035 Msa1202800:CDS 30.0%
!!! TGGAATGGTTGCTTTTAAAA+TGG + chr8_1:56485039-56485058 Msa1202800:CDS 30.0%
TTTACACAAAGACTTTCTTG+AGG + chr8_1:56485258-56485277 Msa1202800:CDS 30.0%
!! TGAGTTTGAACCTATTTTGA+GGG - chr8_1:56485824-56485843 None:intergenic 30.0%
! TTGAGTTTGAACCTATTTTG+AGG - chr8_1:56485825-56485844 None:intergenic 30.0%
GGAGACAATCTACAATAAAT+TGG - chr8_1:56485995-56486014 None:intergenic 30.0%
ATTAATTTCTTCATTGCTGG+AGG + chr8_1:56486054-56486073 Msa1202800:intron 30.0%
!! TGCATTTTAGGGATGATATT+AGG - chr8_1:56486412-56486431 None:intergenic 30.0%
ATACAAAACAACACTGTTCT+CGG + chr8_1:56486449-56486468 Msa1202800:intron 30.0%
TTTGTATGTTAGTAGATAGG+TGG + chr8_1:56486520-56486539 Msa1202800:intron 30.0%
TTGTATGTTAGTAGATAGGT+GGG + chr8_1:56486521-56486540 Msa1202800:intron 30.0%
AATTTGGTTATAATAGTGGC+CGG + chr8_1:56486935-56486954 Msa1202800:intron 30.0%
TCTCACTTTATCCAATAATC+AGG + chr8_1:56487172-56487191 Msa1202800:intron 30.0%
!!! GTTTTAACTAATAAGCAGAC+TGG - chr8_1:56487281-56487300 None:intergenic 30.0%
GTCTGCTTATTAGTTAAAAC+AGG + chr8_1:56487281-56487300 Msa1202800:intron 30.0%
TGAAAAAAGAAAACTTGGAG+AGG + chr8_1:56487381-56487400 Msa1202800:intron 30.0%
!!! TCAACTCAGATGCATTTTTT+AGG - chr8_1:56487487-56487506 None:intergenic 30.0%
!! TTGAGTATTAGTTTGTTGAG+CGG + chr8_1:56487503-56487522 Msa1202800:intron 30.0%
ATTTCAAACATGGCAACTTT+AGG - chr8_1:56487529-56487548 None:intergenic 30.0%
TAAGCTTAGGTTTGATGTAA+TGG + chr8_1:56487617-56487636 Msa1202800:intron 30.0%
AAGCTTAGGTTTGATGTAAT+GGG + chr8_1:56487618-56487637 Msa1202800:intron 30.0%
TATATTACCTGGGTGAAATT+TGG - chr8_1:56487857-56487876 None:intergenic 30.0%
GCTCAAAATATGAAAGAGTA+AGG + chr8_1:56488494-56488513 Msa1202800:intron 30.0%
CTATAATTCTTGTATGTGTG+TGG - chr8_1:56488539-56488558 None:intergenic 30.0%
!!! TTAATTTTTGGTGTTGACGT+TGG - chr8_1:56488813-56488832 None:intergenic 30.0%
AGAGAAGAATATATCAAGTG+GGG - chr8_1:56489007-56489026 None:intergenic 30.0%
! TTTGAAGGTATAAAGAAAGC+TGG + chr8_1:56489107-56489126 Msa1202800:CDS 30.0%
GTCTTGATTAACTTATGTGA+AGG - chr8_1:56489351-56489370 None:intergenic 30.0%
ACTAAAATTCAAATATCGGC+TGG - chr8_1:56489402-56489421 None:intergenic 30.0%
GTGAGAGATAGAAATCATCA+TGG + chr8_1:56484607-56484626 Msa1202800:exon 35.0%
AATCATCATGGTGAATCTTG+TGG + chr8_1:56484619-56484638 Msa1202800:exon 35.0%
CACAAAAACCATTGATGCAT+GGG + chr8_1:56484645-56484664 Msa1202800:CDS 35.0%
GATTCTATCTCTACTGTGTA+GGG - chr8_1:56484695-56484714 None:intergenic 35.0%
TGATTCTATCTCTACTGTGT+AGG - chr8_1:56484696-56484715 None:intergenic 35.0%
TACACAGTAGAGATAGAATC+AGG + chr8_1:56484695-56484714 Msa1202800:CDS 35.0%
GTTCCAGATCTTCTATTCTT+CGG + chr8_1:56484902-56484921 Msa1202800:CDS 35.0%
! TGATCTTTCTGTTTTGTCTG+TGG - chr8_1:56484936-56484955 None:intergenic 35.0%
ACAAAACAGAAAGATCACCT+AGG + chr8_1:56484939-56484958 Msa1202800:CDS 35.0%
ACCAAGTTTCCTTAAAGCAA+TGG - chr8_1:56484984-56485003 None:intergenic 35.0%
! GTTCAAGCTTTGGTTATATC+CGG + chr8_1:56485082-56485101 Msa1202800:CDS 35.0%
AGAATCAGTCATAGCCAAAA+TGG - chr8_1:56485110-56485129 None:intergenic 35.0%
TTGCTGCTCACAAAAAACTT+TGG + chr8_1:56485224-56485243 Msa1202800:CDS 35.0%
! TCACAAAAAACTTTGGTTCC+CGG + chr8_1:56485231-56485250 Msa1202800:CDS 35.0%
AAGTCTTTGTGTAAACGATC+CGG - chr8_1:56485253-56485272 None:intergenic 35.0%
ATTTCACACGTAAGGAATTG+TGG + chr8_1:56485456-56485475 Msa1202800:intron 35.0%
!! GCTTTCTTCTTTTGAAAGGA+AGG + chr8_1:56485668-56485687 Msa1202800:intron 35.0%
!! TTGAACCTATTTTGAGGGAT+GGG - chr8_1:56485819-56485838 None:intergenic 35.0%
!! TTTGAACCTATTTTGAGGGA+TGG - chr8_1:56485820-56485839 None:intergenic 35.0%
!! TTGAATAGATTGGAGGCATT+TGG - chr8_1:56485904-56485923 None:intergenic 35.0%
!! AAGAGAGGTGTTGAATAGAT+TGG - chr8_1:56485914-56485933 None:intergenic 35.0%
! TTTGTTGGCTGTGATTGATA+GGG - chr8_1:56485942-56485961 None:intergenic 35.0%
!! TTTTGTTGGCTGTGATTGAT+AGG - chr8_1:56485943-56485962 None:intergenic 35.0%
! AGCTTCAAGCTGTATTTTGT+TGG - chr8_1:56485957-56485976 None:intergenic 35.0%
TTGATACTTTCGTGTTTCGT+AGG + chr8_1:56486472-56486491 Msa1202800:intron 35.0%
TGTATGTTAGTAGATAGGTG+GGG + chr8_1:56486522-56486541 Msa1202800:intron 35.0%
! ATTCAAGCTGTGATAACGAT+TGG + chr8_1:56486575-56486594 Msa1202800:intron 35.0%
CCTCACATATCTTCCTATAT+GGG - chr8_1:56486774-56486793 None:intergenic 35.0%
ACCTCACATATCTTCCTATA+TGG - chr8_1:56486775-56486794 None:intergenic 35.0%
! AGAGTATCATATACCTCTGT+TGG - chr8_1:56486801-56486820 None:intergenic 35.0%
AACGTAAACTATACTCTCTC+CGG - chr8_1:56486957-56486976 None:intergenic 35.0%
!!! TCTTTTGTGCGCTTTAAAAG+TGG + chr8_1:56487245-56487264 Msa1202800:intron 35.0%
!!! ATTTTTGAGTTGGTGAATGG+TGG + chr8_1:56487422-56487441 Msa1202800:intron 35.0%
TGAAATTGATTGCACATGGT+TGG + chr8_1:56487456-56487475 Msa1202800:intron 35.0%
AGCTTAGGTTTGATGTAATG+GGG + chr8_1:56487619-56487638 Msa1202800:intron 35.0%
TTAACTACGTGGATCATTGT+AGG + chr8_1:56487757-56487776 Msa1202800:intron 35.0%
TGTAGGTGATGTTCACAAAT+AGG + chr8_1:56487774-56487793 Msa1202800:intron 35.0%
TTCACAAATAGGAAAGAACG+AGG + chr8_1:56487785-56487804 Msa1202800:CDS 35.0%
! GACTTCATTCAACCACATTT+TGG + chr8_1:56488334-56488353 Msa1202800:intron 35.0%
! CATTAATCATGGCTTTACAG+AGG + chr8_1:56488423-56488442 Msa1202800:intron 35.0%
TACAGAGGATACATCTTCTA+TGG + chr8_1:56488438-56488457 Msa1202800:intron 35.0%
ACAGAGGATACATCTTCTAT+GGG + chr8_1:56488439-56488458 Msa1202800:intron 35.0%
TGTGTGTGGAGTATATAAAG+AGG - chr8_1:56488525-56488544 None:intergenic 35.0%
TGCATAAAACGAACAAAGAC+TGG + chr8_1:56488649-56488668 Msa1202800:intron 35.0%
! GAGGTGTAAGGTTATCTTTT+GGG - chr8_1:56488721-56488740 None:intergenic 35.0%
!! CAGTTGGGTGATGTTTTTAT+TGG - chr8_1:56488757-56488776 None:intergenic 35.0%
!! TTTGTTGGTAGCAATCAGTT+GGG - chr8_1:56488772-56488791 None:intergenic 35.0%
!!! TTTTGTTGGTAGCAATCAGT+TGG - chr8_1:56488773-56488792 None:intergenic 35.0%
! GGGGGTTTGATGTTAATTTT+TGG - chr8_1:56488825-56488844 None:intergenic 35.0%
! TTTGGTTTCTGCAGTTGTAT+GGG - chr8_1:56488845-56488864 None:intergenic 35.0%
!!! TTTTGGTTTCTGCAGTTGTA+TGG - chr8_1:56488846-56488865 None:intergenic 35.0%
! TGAGGTTATGTCTCAACTTT+TGG - chr8_1:56488863-56488882 None:intergenic 35.0%
AGACATAACCTCAAACTTCA+TGG + chr8_1:56488870-56488889 Msa1202800:intron 35.0%
ATAACCTCAAACTTCATGGA+TGG + chr8_1:56488874-56488893 Msa1202800:intron 35.0%
!!! GGTGTATGTACTTGTTTTTG+TGG - chr8_1:56488900-56488919 None:intergenic 35.0%
!! GGTTTTGATGGTTTTTTGGA+GGG - chr8_1:56488948-56488967 None:intergenic 35.0%
!!! TGGTTTTGATGGTTTTTTGG+AGG - chr8_1:56488949-56488968 None:intergenic 35.0%
!!! GGTTGGTTTTGATGGTTTTT+TGG - chr8_1:56488952-56488971 None:intergenic 35.0%
GAGAAGAATATATCAAGTGG+GGG - chr8_1:56489006-56489025 None:intergenic 35.0%
AGACATCTATTGTAGACACA+TGG - chr8_1:56489155-56489174 None:intergenic 35.0%
GAAGTTTATTGCTTCCTTCT+TGG + chr8_1:56489178-56489197 Msa1202800:CDS 35.0%
! TTCAACTTCATAATTTGCCC+TGG + chr8_1:56489242-56489261 Msa1202800:three_prime_UTR 35.0%
! TCATAATTTGCCCTGGTTAT+TGG + chr8_1:56489249-56489268 Msa1202800:three_prime_UTR 35.0%
TAAGCTAAGACCAATAACCA+GGG - chr8_1:56489262-56489281 None:intergenic 35.0%
TTAAGCTAAGACCAATAACC+AGG - chr8_1:56489263-56489282 None:intergenic 35.0%
GCACAAAAACCATTGATGCA+TGG + chr8_1:56484644-56484663 Msa1202800:CDS 40.0%
TTCATTAGCCCATGCATCAA+TGG - chr8_1:56484656-56484675 None:intergenic 40.0%
! GATGCATGGGCTAATGAAAA+TGG + chr8_1:56484658-56484677 Msa1202800:CDS 40.0%
TGCAAAACCAAATAAACCCG+TGG + chr8_1:56484793-56484812 Msa1202800:CDS 40.0%
AGAACAACCACGGGTTTATT+TGG - chr8_1:56484803-56484822 None:intergenic 40.0%
ACCATGTACTAGAACAACCA+CGG - chr8_1:56484813-56484832 None:intergenic 40.0%
CCATGTTACTATTCCTTCAG+AGG - chr8_1:56484840-56484859 None:intergenic 40.0%
! CCTCTGAAGGAATAGTAACA+TGG + chr8_1:56484837-56484856 Msa1202800:CDS 40.0%
! GTAACATGGCAGTTTCAAGT+TGG + chr8_1:56484851-56484870 Msa1202800:CDS 40.0%
AAACACTCTGCTTGAAACCT+AGG - chr8_1:56484959-56484978 None:intergenic 40.0%
! TAGGTTTCAAGCAGAGTGTT+TGG + chr8_1:56484958-56484977 Msa1202800:CDS 40.0%
AGTGTTTGGCCATTGCTTTA+AGG + chr8_1:56484972-56484991 Msa1202800:CDS 40.0%
!! GCCATTGCTTTAAGGAAACT+TGG + chr8_1:56484980-56484999 Msa1202800:CDS 40.0%
!!! GTTGTTGGTTTTAGCTATGG+TGG + chr8_1:56485019-56485038 Msa1202800:CDS 40.0%
!!! TGGTTTTAGCTATGGTGGAA+TGG + chr8_1:56485024-56485043 Msa1202800:CDS 40.0%
! TCCTGAATTGGTTCAAGCTT+TGG + chr8_1:56485072-56485091 Msa1202800:CDS 40.0%
ACCAAAGCTTGAACCAATTC+AGG - chr8_1:56485076-56485095 None:intergenic 40.0%
! GGTTATATCCGGATCCATTT+TGG + chr8_1:56485093-56485112 Msa1202800:CDS 40.0%
AGTCATAGCCAAAATGGATC+CGG - chr8_1:56485104-56485123 None:intergenic 40.0%
GTGAGTTCATTGCAAGAACT+TGG + chr8_1:56485136-56485155 Msa1202800:CDS 40.0%
AGTCTTTGTGTAAACGATCC+GGG - chr8_1:56485252-56485271 None:intergenic 40.0%
TTATCCTTCTATGCACTGCT+TGG - chr8_1:56485755-56485774 None:intergenic 40.0%
ATATCCCCATCCCTCAAAAT+AGG + chr8_1:56485811-56485830 Msa1202800:intron 40.0%
!! TGAACCTATTTTGAGGGATG+GGG - chr8_1:56485818-56485837 None:intergenic 40.0%
ATGAGCACAAATGTTGCACT+GGG + chr8_1:56485856-56485875 Msa1202800:intron 40.0%
!! AATAGATTGGAGGCATTTGG+CGG - chr8_1:56485901-56485920 None:intergenic 40.0%
!! AGAGGTGTTGAATAGATTGG+AGG - chr8_1:56485911-56485930 None:intergenic 40.0%
ATTGATAGGGAGCTTAAGAG+AGG - chr8_1:56485929-56485948 None:intergenic 40.0%
ACTTTCGTGTTTCGTAGGTA+TGG + chr8_1:56486477-56486496 Msa1202800:intron 40.0%
AATGTCTCACACACCCATAT+AGG + chr8_1:56486758-56486777 Msa1202800:intron 40.0%
CCCATATAGGAAGATATGTG+AGG + chr8_1:56486771-56486790 Msa1202800:intron 40.0%
GAGGTATATGATACTCTCTC+TGG + chr8_1:56486804-56486823 Msa1202800:intron 40.0%
CAACATTCCAAATTTCACCC+AGG + chr8_1:56487847-56487866 Msa1202800:CDS 40.0%
GGTCAAAACTAAAAGGACGA+GGG - chr8_1:56488118-56488137 None:intergenic 40.0%
CAGAGGATACATCTTCTATG+GGG + chr8_1:56488440-56488459 Msa1202800:intron 40.0%
! TGTTCGTTTTATGCAGAGAC+TGG - chr8_1:56488644-56488663 None:intergenic 40.0%
! CGAGGTGTAAGGTTATCTTT+TGG - chr8_1:56488722-56488741 None:intergenic 40.0%
! TATTGGTGTTTAGATGTGCG+AGG - chr8_1:56488740-56488759 None:intergenic 40.0%
!!! ATTTTTGGTGTTGACGTTGG+TGG - chr8_1:56488810-56488829 None:intergenic 40.0%
TTGGTTTCTGCAGTTGTATG+GGG - chr8_1:56488844-56488863 None:intergenic 40.0%
!!! ATGGTTTTTTGGAGGGCTTT+TGG - chr8_1:56488941-56488960 None:intergenic 40.0%
AGAAGGTGAGATGTTGTGTA+GGG - chr8_1:56488980-56488999 None:intergenic 40.0%
GTATCAAATGACAGGCAACT+AGG + chr8_1:56489071-56489090 Msa1202800:intron 40.0%
! CATGGGCTAATGAAAATGGC+AGG + chr8_1:56484662-56484681 Msa1202800:CDS 45.0%
!! GGCTTTGTTATGGTCTCTGA+AGG - chr8_1:56484743-56484762 None:intergenic 45.0%
CCATGTACTAGAACAACCAC+GGG - chr8_1:56484812-56484831 None:intergenic 45.0%
!! GTACATGGTTTTGCCTCTGA+AGG + chr8_1:56484824-56484843 Msa1202800:CDS 45.0%
CCTCCGAAGAATAGAAGATC+TGG - chr8_1:56484908-56484927 None:intergenic 45.0%
CCAGATCTTCTATTCTTCGG+AGG + chr8_1:56484905-56484924 Msa1202800:CDS 45.0%
GGCTGAGATGTATCCTGAAT+TGG + chr8_1:56485060-56485079 Msa1202800:CDS 45.0%
CTTCTATGCACTGCTTGGTT+GGG - chr8_1:56485750-56485769 None:intergenic 45.0%
CATGAGCACAAATGTTGCAC+TGG + chr8_1:56485855-56485874 Msa1202800:intron 45.0%
TGAGCACAAATGTTGCACTG+GGG + chr8_1:56485857-56485876 Msa1202800:intron 45.0%
TATGTGAGGTTGACCAACAG+AGG + chr8_1:56486785-56486804 Msa1202800:intron 45.0%
GAACGAGGTGAGCTATTAGA+TGG + chr8_1:56487800-56487819 Msa1202800:CDS 45.0%
GGGTCAAAACTAAAAGGACG+AGG - chr8_1:56488119-56488138 None:intergenic 45.0%
GTTTAGATGTGCGAGGTGTA+AGG - chr8_1:56488733-56488752 None:intergenic 45.0%
TGGTTTCTGCAGTTGTATGG+GGG - chr8_1:56488843-56488862 None:intergenic 45.0%
!!! GGGCTTTTGGTTGGTTTTGA+TGG - chr8_1:56488960-56488979 None:intergenic 45.0%
! TGTTGTGTAGGGCTTTTGGT+TGG - chr8_1:56488969-56488988 None:intergenic 45.0%
! GAGATGTTGTGTAGGGCTTT+TGG - chr8_1:56488973-56488992 None:intergenic 45.0%
GAGAAGGTGAGATGTTGTGT+AGG - chr8_1:56488981-56489000 None:intergenic 45.0%
ATATCAAGTGGGGGAAGAGA+AGG - chr8_1:56488997-56489016 None:intergenic 45.0%
AAATGACAGGCAACTAGGAG+AGG + chr8_1:56489076-56489095 Msa1202800:intron 45.0%
AATGACAGGCAACTAGGAGA+GGG + chr8_1:56489077-56489096 Msa1202800:intron 45.0%
TGCTTCATTTGACGCCAAGA+AGG - chr8_1:56489195-56489214 None:intergenic 45.0%
!!! ATATAAAATTTTAAAATTGT+AGG + chr8_1:56485563-56485582 Msa1202800:intron 5.0%
!! AAAAAAATATAACATTATTT+CGG - chr8_1:56485694-56485713 None:intergenic 5.0%
!!! TTAAAATATATTTTTTGTAA+TGG + chr8_1:56487565-56487584 Msa1202800:intron 5.0%
!!! TAAAATATATTTTTTGTAAT+GGG + chr8_1:56487566-56487585 Msa1202800:intron 5.0%
CCCGTGGTTGTTCTAGTACA+TGG + chr8_1:56484809-56484828 Msa1202800:CDS 50.0%
CCTTCTATGCACTGCTTGGT+TGG - chr8_1:56485751-56485770 None:intergenic 50.0%
CCAACCAAGCAGTGCATAGA+AGG + chr8_1:56485748-56485767 Msa1202800:intron 50.0%
GTGGCCATCCATGAAGTTTG+AGG - chr8_1:56488881-56488900 None:intergenic 50.0%
AGCTGGTCACCTTGTTCACT+TGG + chr8_1:56489124-56489143 Msa1202800:CDS 50.0%
ATGGTCGCTCCAAGTGAACA+AGG - chr8_1:56489136-56489155 None:intergenic 50.0%
GCACAAATGTTGCACTGGGG+TGG + chr8_1:56485860-56485879 Msa1202800:intron 55.0%
!! TGGTGCGAGTAGCGGATGAT+TGG - chr8_1:56488921-56488940 None:intergenic 55.0%
!! AGGGCTTTTGGTGCGAGTAG+CGG - chr8_1:56488929-56488948 None:intergenic 55.0%
! GGAGAGGGCACAACGTTTGA+AGG + chr8_1:56489092-56489111 Msa1202800:CDS 55.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 56484600 56489445 56484600 ID=Msa1202800;Name=Msa1202800
chr8_1 mRNA 56484600 56489445 56484600 ID=Msa1202800-mRNA-1;Parent=Msa1202800;Name=Msa1202800-mRNA-1;_AED=0.01;_eAED=0.01;_QI=26|1|1|1|1|1|4|225|315
chr8_1 exon 56484600 56485279 56484600 ID=Msa1202800-mRNA-1:exon:18338;Parent=Msa1202800-mRNA-1
chr8_1 exon 56487779 56487868 56487779 ID=Msa1202800-mRNA-1:exon:18339;Parent=Msa1202800-mRNA-1
chr8_1 exon 56488443 56488510 56488443 ID=Msa1202800-mRNA-1:exon:18340;Parent=Msa1202800-mRNA-1
chr8_1 exon 56489085 56489445 56489085 ID=Msa1202800-mRNA-1:exon:18341;Parent=Msa1202800-mRNA-1
chr8_1 five_prime_UTR 56484600 56484625 56484600 ID=Msa1202800-mRNA-1:five_prime_utr;Parent=Msa1202800-mRNA-1
chr8_1 CDS 56484626 56485279 56484626 ID=Msa1202800-mRNA-1:cds;Parent=Msa1202800-mRNA-1
chr8_1 CDS 56487779 56487868 56487779 ID=Msa1202800-mRNA-1:cds;Parent=Msa1202800-mRNA-1
chr8_1 CDS 56488443 56488510 56488443 ID=Msa1202800-mRNA-1:cds;Parent=Msa1202800-mRNA-1
chr8_1 CDS 56489085 56489220 56489085 ID=Msa1202800-mRNA-1:cds;Parent=Msa1202800-mRNA-1
chr8_1 three_prime_UTR 56489221 56489445 56489221 ID=Msa1202800-mRNA-1:three_prime_utr;Parent=Msa1202800-mRNA-1
Gene Sequence

>Msa1202800

ATGGTGAATCTTGTGGCAGCACAAAAACCATTGATGCATGGGCTAATGAAAATGGCAGGTATACGTCCCTACACAGTAGAGATAGAATCAGGAACAACAATGAATTTTTGGGTACCTTCAGAGACCATAACAAAGCCAAAGAAAAAAGAAGAAAAACCCAAAATCACTGCAAAACCAAATAAACCCGTGGTTGTTCTAGTACATGGTTTTGCCTCTGAAGGAATAGTAACATGGCAGTTTCAAGTTGGTGCATTAACAAAAAAGTACGCTGTTTATGTTCCAGATCTTCTATTCTTCGGAGGTTCAACCACAGACAAAACAGAAAGATCACCTAGGTTTCAAGCAGAGTGTTTGGCCATTGCTTTAAGGAAACTTGGTGTTGAAAAATGTATTGTTGTTGGTTTTAGCTATGGTGGAATGGTTGCTTTTAAAATGGCTGAGATGTATCCTGAATTGGTTCAAGCTTTGGTTATATCCGGATCCATTTTGGCTATGACTGATTCTATTAGTGTGAGTTCATTGCAAGAACTTGGTTTTTCTTCTTCTTCTGAGCTTTTGTTACCTAATTCTGTTAAAGGACTTAAAGCACTTTTGTCTGTTGCTGCTCACAAAAAACTTTGGTTCCCGGATCGTTTACACAAAGACTTTCTTGAGGTGATGTTCACAAATAGGAAAGAACGAGGTGAGCTATTAGATGGTTTAGTAATTAGCAATAAAGACGTCAACATTCCAAATTTCACCCAGAGGATACATCTTCTATGGGGTGAAAATGATCAAATTTTCAAATTGGAACTTGCTCAAAATATGAAAGAGCAACTAGGAGAGGGCACAACGTTTGAAGGTATAAAGAAAGCTGGTCACCTTGTTCACTTGGAGCGACCATGTGTCTACAATAGATGTCTCAAGAAGTTTATTGCTTCCTTCTTGGCGTCAAATGAAGCAAAATAA

Protein sequence

>Msa1202800

MVNLVAAQKPLMHGLMKMAGIRPYTVEIESGTTMNFWVPSETITKPKKKEEKPKITAKPNKPVVVLVHGFASEGIVTWQFQVGALTKKYAVYVPDLLFFGGSTTDKTERSPRFQAECLAIALRKLGVEKCIVVGFSYGGMVAFKMAEMYPELVQALVISGSILAMTDSISVSSLQELGFSSSSELLLPNSVKGLKALLSVAAHKKLWFPDRLHKDFLEVMFTNRKERGELLDGLVISNKDVNIPNFTQRIHLLWGENDQIFKLELAQNMKEQLGEGTTFEGIKKAGHLVHLERPCVYNRCLKKFIASFLASNEAK*