Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577490 | XP_013446597.2 | 97.076 | 513 | 15 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1023 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577490 | sp|A0A1P8B760|AMI4G_ARATH | 61.983 | 484 | 171 | 4 | 27 | 506 | 34 | 508 | 0.0 | 573 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577490 | A0A396GPR5 | 97.076 | 513 | 15 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1023 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0022470 | Msa0577490 | 0.807493 | 4.921320e-50 | -8.615850e-47 |
| Msa0061220 | Msa0577490 | 0.819893 | 9.143617e-53 | -8.615850e-47 |
| Msa0078700 | Msa0577490 | 0.818529 | 1.869679e-52 | -8.615850e-47 |
| Msa0101960 | Msa0577490 | 0.803254 | 3.805429e-49 | -8.615850e-47 |
| Msa0139680 | Msa0577490 | 0.828101 | 1.083816e-54 | -8.615850e-47 |
| Msa0164490 | Msa0577490 | 0.840535 | 8.202121e-58 | -8.615850e-47 |
| Msa0170630 | Msa0577490 | 0.843447 | 1.393472e-58 | -8.615850e-47 |
| Msa0171330 | Msa0577490 | 0.819387 | 1.192933e-52 | -8.615850e-47 |
| Msa0204140 | Msa0577490 | 0.802957 | 4.383607e-49 | -8.615850e-47 |
| Msa0217060 | Msa0577490 | 0.803309 | 3.707869e-49 | -8.615850e-47 |
| Msa0415100 | Msa0577490 | 0.834192 | 3.454110e-56 | -8.615850e-47 |
| Msa0415640 | Msa0577490 | 0.822582 | 2.192582e-53 | -8.615850e-47 |
| Msa0442860 | Msa0577490 | 0.810543 | 1.093840e-50 | -8.615850e-47 |
| Msa0264680 | Msa0577490 | 0.801755 | 7.752442e-49 | -8.615850e-47 |
| Msa0271540 | Msa0577490 | 0.805420 | 1.346559e-49 | -8.615850e-47 |
| Msa0285890 | Msa0577490 | 0.806614 | 7.552199e-50 | -8.615850e-47 |
| Msa0296900 | Msa0577490 | 0.819561 | 1.088724e-52 | -8.615850e-47 |
| Msa0307420 | Msa0577490 | 0.809819 | 1.566720e-50 | -8.615850e-47 |
| Msa0335080 | Msa0577490 | 0.819255 | 1.278448e-52 | -8.615850e-47 |
| Msa0345890 | Msa0577490 | 0.804695 | 1.908921e-49 | -8.615850e-47 |
| Msa0355550 | Msa0577490 | 0.819643 | 1.043084e-52 | -8.615850e-47 |
| Msa0490320 | Msa0577490 | 0.831546 | 1.569723e-55 | -8.615850e-47 |
| Msa0517270 | Msa0577490 | 0.833718 | 4.539996e-56 | -8.615850e-47 |
| Msa0534610 | Msa0577490 | 0.833856 | 4.192693e-56 | -8.615850e-47 |
| Msa0563860 | Msa0577490 | 0.909689 | 4.312335e-82 | -8.615850e-47 |
| Msa0567370 | Msa0577490 | 0.805264 | 1.451512e-49 | -8.615850e-47 |
| Msa0577490 | Msa0590810 | 0.837695 | 4.465278e-57 | -8.615850e-47 |
| Msa0577490 | Msa0592330 | 0.803629 | 3.182536e-49 | -8.615850e-47 |
| Msa0577490 | Msa0592650 | 0.810925 | 9.044661e-51 | -8.615850e-47 |
| Msa0577490 | Msa0598060 | 0.806299 | 8.799641e-50 | -8.615850e-47 |
| Msa0577490 | Msa0600590 | 0.803089 | 4.117540e-49 | -8.615850e-47 |
| Msa0577490 | Msa0615210 | 0.804053 | 2.597954e-49 | -8.615850e-47 |
| Msa0577490 | Msa0619310 | 0.827746 | 1.319374e-54 | -8.615850e-47 |
| Msa0577490 | Msa0631130 | 0.838521 | 2.736753e-57 | -8.615850e-47 |
| Msa0577490 | Msa0635270 | 0.833681 | 4.638617e-56 | -8.615850e-47 |
| Msa0577490 | Msa0636210 | 0.821218 | 4.538833e-53 | -8.615850e-47 |
| Msa0577490 | Msa0637830 | 0.805925 | 1.054744e-49 | -8.615850e-47 |
| Msa0577490 | Msa0650560 | 0.801697 | 7.967302e-49 | -8.615850e-47 |
| Msa0577490 | Msa0653880 | 0.811248 | 7.699477e-51 | -8.615850e-47 |
| Msa0577490 | Msa0658190 | 0.800553 | 1.365816e-48 | -8.615850e-47 |
| Msa0577490 | Msa0662580 | 0.816397 | 5.646928e-52 | -8.615850e-47 |
| Msa0577490 | Msa0669350 | 0.818322 | 2.082399e-52 | -8.615850e-47 |
| Msa0577490 | Msa0704680 | 0.808561 | 2.914992e-50 | -8.615850e-47 |
| Msa0577490 | Msa0709140 | 0.824828 | 6.531693e-54 | -8.615850e-47 |
| Msa0577490 | Msa0744640 | 0.837672 | 4.527409e-57 | -8.615850e-47 |
| Msa0577490 | Msa0833270 | 0.806479 | 8.062048e-50 | -8.615850e-47 |
| Msa0577490 | Msa0841730 | 0.837413 | 5.276019e-57 | -8.615850e-47 |
| Msa0577490 | Msa0863990 | 0.814496 | 1.495481e-51 | -8.615850e-47 |
| Msa0577490 | Msa0870510 | 0.838805 | 2.311232e-57 | -8.615850e-47 |
| Msa0577490 | Msa0901270 | 0.824491 | 7.842024e-54 | -8.615850e-47 |
| Msa0577490 | Msa0905570 | 0.834272 | 3.298915e-56 | -8.615850e-47 |
| Msa0577490 | Msa0930270 | 0.818180 | 2.242337e-52 | -8.615850e-47 |
| Msa0577490 | Msa1001120 | 0.821500 | 3.906022e-53 | -8.615850e-47 |
| Msa0577490 | Msa1027910 | 0.800045 | 1.732211e-48 | -8.615850e-47 |
| Msa0577490 | Msa1034450 | 0.840391 | 8.944846e-58 | -8.615850e-47 |
| Msa0577490 | Msa1069890 | 0.808113 | 3.633491e-50 | -8.615850e-47 |
| Msa0577490 | Msa1074200 | 0.842471 | 2.534579e-58 | -8.615850e-47 |
| Msa0577490 | Msa1084890 | 0.810712 | 1.005795e-50 | -8.615850e-47 |
| Msa0577490 | Msa1086490 | -0.829414 | 5.216815e-55 | -8.615850e-47 |
| Msa0577490 | Msa1086670 | -0.818803 | 1.619912e-52 | -8.615850e-47 |
| Msa0577490 | Msa1092310 | 0.836544 | 8.794424e-57 | -8.615850e-47 |
| Msa0577490 | Msa1114670 | 0.851881 | 6.648995e-61 | -8.615850e-47 |
| Msa0577490 | Msa1116840 | 0.849248 | 3.652411e-60 | -8.615850e-47 |
| Msa0577490 | Msa1119920 | 0.834211 | 3.416623e-56 | -8.615850e-47 |
| Msa0577490 | Msa1120580 | 0.802344 | 5.865122e-49 | -8.615850e-47 |
| Msa0577490 | Msa1131430 | 0.840924 | 6.484716e-58 | -8.615850e-47 |
| Msa0577490 | Msa1133700 | 0.844680 | 6.505251e-59 | -8.615850e-47 |
| Msa0577490 | Msa1136760 | 0.810932 | 9.013510e-51 | -8.615850e-47 |
| Msa0577490 | Msa1157110 | 0.833425 | 5.372048e-56 | -8.615850e-47 |
| Msa0577490 | Msa1157670 | 0.855929 | 4.533883e-62 | -8.615850e-47 |
| Msa0577490 | Msa1159170 | 0.869850 | 2.273489e-66 | -8.615850e-47 |
| Msa0577490 | Msa1180430 | 0.808527 | 2.964881e-50 | -8.615850e-47 |
| Msa0577490 | Msa1187490 | 0.813139 | 2.977704e-51 | -8.615850e-47 |
| Msa0577490 | Msa1202800 | 0.817367 | 3.421953e-52 | -8.615850e-47 |
| Msa0577490 | Msa1203810 | 0.800373 | 1.485753e-48 | -8.615850e-47 |
| Msa0577490 | Msa1207390 | 0.800012 | 1.759272e-48 | -8.615850e-47 |
| Msa0577490 | Msa1238600 | 0.823161 | 1.607692e-53 | -8.615850e-47 |
| Msa0577490 | Msa1255210 | 0.823073 | 1.685597e-53 | -8.615850e-47 |
| Msa0577490 | Msa1256060 | 0.822998 | 1.754267e-53 | -8.615850e-47 |
| Msa0577490 | Msa1289050 | 0.810561 | 1.084049e-50 | -8.615850e-47 |
| Msa0577490 | Msa1289090 | 0.821729 | 3.458748e-53 | -8.615850e-47 |
| Msa0577490 | Msa1295650 | 0.820794 | 5.683055e-53 | -8.615850e-47 |
| Msa0577490 | Msa1296240 | 0.810098 | 1.364566e-50 | -8.615850e-47 |
| Msa0577490 | Msa1306830 | 0.960603 | 9.599007e-119 | -8.615850e-47 |
| Msa0577490 | Msa1307530 | 0.826292 | 2.939534e-54 | -8.615850e-47 |
| Msa0577490 | Msa1315480 | 0.828890 | 6.988644e-55 | -8.615850e-47 |
| Msa0577490 | Msa1362850 | 0.837317 | 5.583536e-57 | -8.615850e-47 |
| Msa0577490 | Msa1367790 | 0.812762 | 3.602045e-51 | -8.615850e-47 |
| Msa0577490 | Msa1389170 | 0.812001 | 5.280142e-51 | -8.615850e-47 |
| Msa0577490 | Msa1390290 | 0.801776 | 7.674004e-49 | -8.615850e-47 |
| Msa0577490 | Msa1395110 | 0.801859 | 7.381902e-49 | -8.615850e-47 |
| Msa0577490 | Msa1398900 | 0.804066 | 2.581537e-49 | -8.615850e-47 |
| Msa0577490 | Msa1415410 | 0.808590 | 2.873768e-50 | -8.615850e-47 |
| Msa0577490 | Msa1420940 | 0.803045 | 4.204423e-49 | -8.615850e-47 |
| Msa0577490 | Msa1447870 | 0.813346 | 2.681041e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577490 | MtrunA17_Chr8g0377681 | 97.076 | 513 | 15 | 0 | 1 | 513 | 1 | 513 | 0.0 | 1023 |
| Msa0577490 | MtrunA17_Chr8g0377691 | 84.932 | 511 | 76 | 1 | 3 | 513 | 6 | 515 | 0.0 | 881 |
| Msa0577490 | MtrunA17_Chr8g0377651 | 87.117 | 489 | 62 | 1 | 25 | 513 | 28 | 515 | 0.0 | 880 |
| Msa0577490 | MtrunA17_Chr8g0377641 | 84.086 | 509 | 77 | 2 | 2 | 510 | 5 | 509 | 0.0 | 878 |
| Msa0577490 | MtrunA17_Chr8g0377701 | 84.676 | 509 | 76 | 2 | 3 | 510 | 6 | 513 | 0.0 | 869 |
| Msa0577490 | MtrunA17_Chr4g0037521 | 61.111 | 486 | 179 | 7 | 28 | 506 | 25 | 507 | 0.0 | 570 |
| Msa0577490 | MtrunA17_Chr4g0037491 | 58.361 | 305 | 114 | 6 | 202 | 497 | 1 | 301 | 5.22e-115 | 342 |
| Msa0577490 | MtrunA17_Chr8g0377661 | 92.308 | 78 | 6 | 0 | 436 | 513 | 1 | 78 | 4.25e-43 | 147 |
| Msa0577490 | MtrunA17_Chr4g0037501 | 63.830 | 94 | 32 | 2 | 102 | 193 | 2 | 95 | 2.48e-30 | 113 |
| Msa0577490 | MtrunA17_Chr8g0385461 | 32.171 | 258 | 158 | 7 | 29 | 284 | 154 | 396 | 7.44e-28 | 117 |
| Msa0577490 | MtrunA17_Chr3g0097801 | 33.108 | 296 | 173 | 6 | 15 | 306 | 34 | 308 | 2.34e-26 | 112 |
| Msa0577490 | MtrunA17_Chr2g0279961 | 28.975 | 283 | 188 | 6 | 38 | 315 | 130 | 404 | 3.56e-20 | 94.0 |
| Msa0577490 | MtrunA17_Chr3g0130801 | 26.027 | 511 | 298 | 21 | 37 | 513 | 200 | 664 | 1.26e-19 | 92.4 |
| Msa0577490 | MtrunA17_Chr8g0384851 | 25.333 | 525 | 314 | 21 | 18 | 505 | 116 | 599 | 6.08e-16 | 80.9 |
| Msa0577490 | MtrunA17_Chr1g0191741 | 38.655 | 119 | 67 | 3 | 137 | 254 | 63 | 176 | 1.84e-13 | 72.4 |
| Msa0577490 | MtrunA17_Chr4g0050371 | 37.190 | 121 | 70 | 2 | 135 | 254 | 107 | 222 | 3.73e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0577490 | AT4G34880.2 | 61.983 | 484 | 171 | 4 | 27 | 506 | 34 | 508 | 0.0 | 573 |
| Msa0577490 | AT4G34880.1 | 54.865 | 483 | 161 | 5 | 27 | 506 | 34 | 462 | 5.81e-178 | 508 |
| Msa0577490 | AT5G07360.1 | 33.068 | 251 | 155 | 6 | 30 | 278 | 197 | 436 | 4.97e-27 | 115 |
| Msa0577490 | AT5G07360.3 | 33.068 | 251 | 155 | 6 | 30 | 278 | 197 | 436 | 4.97e-27 | 115 |
| Msa0577490 | AT3G25660.1 | 27.158 | 556 | 296 | 19 | 4 | 498 | 14 | 521 | 5.31e-25 | 108 |
| Msa0577490 | AT5G07360.2 | 32.669 | 251 | 149 | 7 | 30 | 278 | 197 | 429 | 7.97e-24 | 105 |
| Msa0577490 | AT5G64440.1 | 24.649 | 499 | 318 | 17 | 38 | 508 | 131 | 599 | 3.47e-20 | 94.4 |
| Msa0577490 | AT1G08980.1 | 41.176 | 119 | 64 | 3 | 137 | 254 | 64 | 177 | 2.30e-14 | 75.5 |
| Msa0577490 | AT5G09420.1 | 37.607 | 117 | 67 | 2 | 135 | 250 | 105 | 216 | 8.98e-11 | 64.7 |
Find 137 sgRNAs with CRISPR-Local
Find 233 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTTATACTCACCAATTT+TGG | 0.071732 | 4_1:-81854140 | None:intergenic |
| GTTGCATGGAATACCTATTT+TGG | 0.183488 | 4_1:+81851692 | Msa0577490:CDS |
| CAGCCATTTGGAATTTGTTT+TGG | 0.197424 | 4_1:+81854486 | Msa0577490:CDS |
| CAAGTTGTCTTGATGTTAAT+TGG | 0.201405 | 4_1:-81851533 | None:intergenic |
| AAAGGAATCGGAAGAAATTA+AGG | 0.234594 | 4_1:-81851398 | None:intergenic |
| ATGACAAGATGGTCAGAAAA+TGG | 0.246254 | 4_1:+81854339 | Msa0577490:CDS |
| AATATCAGTAGCTGCAAATT+TGG | 0.248946 | 4_1:+81852364 | Msa0577490:CDS |
| TGCACTTCTATAGATGATTT+AGG | 0.260197 | 4_1:-81854744 | None:intergenic |
| TTGATGTTAATTGGTTTCTT+TGG | 0.276109 | 4_1:-81851524 | None:intergenic |
| TTTAGTAGCATACTTGCTAT+TGG | 0.285041 | 4_1:+81854420 | Msa0577490:CDS |
| TGAGTGAGTGGTCAAATTAC+AGG | 0.310539 | 4_1:+81851856 | Msa0577490:CDS |
| GAATCTGGTGCTATCATATT+GGG | 0.314103 | 4_1:+81851822 | Msa0577490:CDS |
| TTTCATCATGAGTTGACTAA+TGG | 0.314260 | 4_1:+81851358 | None:intergenic |
| CTAAAGAAAGACGGACTAAT+AGG | 0.316078 | 4_1:+81853078 | Msa0577490:CDS |
| ATGTTATCCTTAACCAAAAT+AGG | 0.317243 | 4_1:-81851705 | None:intergenic |
| CAGGGATCATCCAAAGTATA+TGG | 0.328369 | 4_1:-81852320 | None:intergenic |
| GGAATCTGGTGCTATCATAT+TGG | 0.328454 | 4_1:+81851821 | Msa0577490:CDS |
| CAGGCAGAGAGGTGCAGTTT+TGG | 0.331310 | 4_1:+81853953 | Msa0577490:intron |
| TACCCGACTGTGTCTTGCCT+TGG | 0.332981 | 4_1:-81852509 | None:intergenic |
| GGCTCCATCTTATGCCCTTC+AGG | 0.344879 | 4_1:+81852416 | Msa0577490:CDS |
| AATTGAGCATAGCCACCTTC+TGG | 0.348881 | 4_1:-81853054 | None:intergenic |
| AAGCACCTGGTTCTCTTTCA+AGG | 0.351952 | 4_1:+81851670 | Msa0577490:CDS |
| ATGCTACTAAAGGATGAAAA+AGG | 0.353386 | 4_1:-81854408 | None:intergenic |
| CAGCTTGCAACATGATATCT+TGG | 0.356824 | 4_1:-81854269 | None:intergenic |
| GTGTCTTGCCTTGGGCTGAT+TGG | 0.357682 | 4_1:-81852500 | None:intergenic |
| TGAAAACCCGCGGTACAATA+TGG | 0.358385 | 4_1:+81854797 | Msa0577490:three_prime_UTR |
| TCCAAGACACCTTTGAGAAC+TGG | 0.358911 | 4_1:-81851591 | None:intergenic |
| TCTGCTTGTGCTAATGCATC+TGG | 0.369297 | 4_1:-81851621 | None:intergenic |
| GCTGAAAAGACAAATGGAAT+TGG | 0.382745 | 4_1:+81854288 | Msa0577490:CDS |
| TCTGATACAGTCCTGCAAAT+TGG | 0.383017 | 4_1:-81852955 | None:intergenic |
| TAGATGATTTAGGATTGTTC+AGG | 0.383525 | 4_1:-81854734 | None:intergenic |
| GTTACCAAGTTAAGGGAATC+TGG | 0.384512 | 4_1:+81851807 | Msa0577490:CDS |
| TATGAAAAGGGTCAGCCATT+TGG | 0.384634 | 4_1:+81854474 | Msa0577490:CDS |
| CTTGCTATTGGAGGTTATCC+TGG | 0.391166 | 4_1:+81854432 | Msa0577490:CDS |
| CCTGCTGGAACAATGATTCC+AGG | 0.396619 | 4_1:-81854450 | None:intergenic |
| TACCTTTCCTTGTCCACCTC+TGG | 0.402662 | 4_1:-81851907 | None:intergenic |
| CCAAGACACCTTTGAGAACT+GGG | 0.403077 | 4_1:-81851590 | None:intergenic |
| ATGGTAGTTGATTGCGTAGC+AGG | 0.405906 | 4_1:-81851447 | None:intergenic |
| TAGGAGGAACTTGATAAGTA+TGG | 0.408411 | 4_1:+81854246 | Msa0577490:intron |
| ACCCGACTGTGTCTTGCCTT+GGG | 0.412367 | 4_1:-81852508 | None:intergenic |
| TTTGCAGAATCCATATACTT+TGG | 0.416501 | 4_1:+81852310 | Msa0577490:intron |
| TAAGCAATTTCAATCAACTT+TGG | 0.417086 | 4_1:-81854528 | None:intergenic |
| TAAGGATAACATTGCAACTA+AGG | 0.417159 | 4_1:+81851716 | Msa0577490:CDS |
| TGCGTAGCAGGGAAGGTAAC+TGG | 0.418344 | 4_1:-81851435 | None:intergenic |
| TGGTCAAATTACAGGTCTAA+TGG | 0.421009 | 4_1:+81851864 | Msa0577490:CDS |
| AGGTGTTGTTACCAAGTTAA+GGG | 0.431180 | 4_1:+81851800 | Msa0577490:CDS |
| CAGGTGTTGTTACCAAGTTA+AGG | 0.431264 | 4_1:+81851799 | Msa0577490:CDS |
| CCCAGTTCTCAAAGGTGTCT+TGG | 0.444958 | 4_1:+81851590 | Msa0577490:CDS |
| GTATGGTGAAGTTGTATTCA+TGG | 0.463177 | 4_1:+81854832 | Msa0577490:three_prime_UTR |
| AAGGAATCGGAAGAAATTAA+GGG | 0.463803 | 4_1:-81851397 | None:intergenic |
| AGCACCAGATTCCCTTAACT+TGG | 0.473094 | 4_1:-81851811 | None:intergenic |
| TTGCAAGCTGAAAAGACAAA+TGG | 0.474253 | 4_1:+81854282 | Msa0577490:CDS |
| TGACAAGATGGTCAGAAAAT+GGG | 0.481903 | 4_1:+81854340 | Msa0577490:CDS |
| ACAATGATATTCACGGGAAG+TGG | 0.481922 | 4_1:-81854639 | None:intergenic |
| AGCTACACCTGAAAACGTTA+AGG | 0.482219 | 4_1:+81853169 | Msa0577490:CDS |
| GCCCAAGGCAAGACACAGTC+GGG | 0.483498 | 4_1:+81852507 | Msa0577490:CDS |
| GGTTCTCTTTCAAGGTTGCA+TGG | 0.486306 | 4_1:+81851678 | Msa0577490:CDS |
| GTGATGCTACTAAGTCTTTG+AGG | 0.490355 | 4_1:-81854073 | None:intergenic |
| TGTTCCAGCAGGATATGAAA+AGG | 0.490531 | 4_1:+81854461 | Msa0577490:CDS |
| AATAGCAAGTATGCTACTAA+AGG | 0.492751 | 4_1:-81854418 | None:intergenic |
| AGTAGCATACTTGCTATTGG+AGG | 0.497454 | 4_1:+81854423 | Msa0577490:CDS |
| TCTGACTTTCGAAGAGGAGG+TGG | 0.500340 | 4_1:-81854582 | None:intergenic |
| TTTGAATATTGATTTGGTTG+AGG | 0.503213 | 4_1:-81851566 | None:intergenic |
| CCTGGAATCATTGTTCCAGC+AGG | 0.504120 | 4_1:+81854450 | Msa0577490:CDS |
| ATATTCACGGGAAGTGGAGG+GGG | 0.509394 | 4_1:-81854633 | None:intergenic |
| TTCAGGTCTTAACTCAGTGG+TGG | 0.510569 | 4_1:+81852433 | Msa0577490:CDS |
| GTAACAACACCTGCATCTCT+TGG | 0.511275 | 4_1:-81851789 | None:intergenic |
| CCTCCAAAACAAATTCCAAA+TGG | 0.513160 | 4_1:-81854489 | None:intergenic |
| CAAAGAAACAATGATATTCA+CGG | 0.513329 | 4_1:-81854646 | None:intergenic |
| ATGTCACTAACATGGTTGAT+TGG | 0.514444 | 4_1:+81854772 | Msa0577490:three_prime_UTR |
| GGACTAATAGGAAAGAGAAT+AGG | 0.515996 | 4_1:+81853090 | Msa0577490:CDS |
| CAGCATCCATATTGTACCGC+GGG | 0.519748 | 4_1:-81854803 | None:intergenic |
| TGCAACCTTGAAAGAGAACC+AGG | 0.523206 | 4_1:-81851675 | None:intergenic |
| TAGAGCTGATCAAGAGAGAA+GGG | 0.527368 | 4_1:+81851644 | Msa0577490:CDS |
| AAGACCTGAAGGGCATAAGA+TGG | 0.527458 | 4_1:-81852420 | None:intergenic |
| CCTCTGGCACTCCAACCACT+TGG | 0.532038 | 4_1:-81851891 | None:intergenic |
| GAAAGTGTCAATGCCTGCTA+TGG | 0.533543 | 4_1:-81852998 | None:intergenic |
| ATGATATTCACGGGAAGTGG+AGG | 0.534855 | 4_1:-81854636 | None:intergenic |
| TATGGATGCTGCTACATGTA+TGG | 0.540308 | 4_1:+81854815 | Msa0577490:three_prime_UTR |
| ACATCTGCCAAGCTTCTCAC+TGG | 0.542835 | 4_1:-81854095 | None:intergenic |
| TTCATAGCAATATCTTCACT+TGG | 0.543028 | 4_1:-81854020 | None:intergenic |
| TCAGTGGTGCCAAGAGATGC+AGG | 0.543965 | 4_1:+81851780 | Msa0577490:CDS |
| AGCATCACCAGTGAGAAGCT+TGG | 0.549066 | 4_1:+81854088 | Msa0577490:CDS |
| GGCCACTGAATTCTCAATTG+AGG | 0.551453 | 4_1:+81851470 | Msa0577490:CDS |
| TGATATTCACGGGAAGTGGA+GGG | 0.551594 | 4_1:-81854635 | None:intergenic |
| GATAAGCTAAACACTACTGC+AGG | 0.552473 | 4_1:+81851738 | Msa0577490:CDS |
| TATGTTCTTGAAACCATAGC+AGG | 0.553334 | 4_1:+81852985 | Msa0577490:CDS |
| GTTGGTCTCACTAGTAGAGC+AGG | 0.557670 | 4_1:+81852470 | Msa0577490:CDS |
| TGCCAGAGGTGGACAAGGAA+AGG | 0.558940 | 4_1:+81851905 | Msa0577490:CDS |
| TGATCCACTACTTGATCCAC+AGG | 0.561542 | 4_1:-81852339 | None:intergenic |
| AATTGAGAATTCAGTGGCCA+TGG | 0.562344 | 4_1:-81851466 | None:intergenic |
| AGTTGATTGCGTAGCAGGGA+AGG | 0.562910 | 4_1:-81851442 | None:intergenic |
| CTAATGGAGCTCCAAGTGGT+TGG | 0.563231 | 4_1:+81851880 | Msa0577490:CDS |
| CAAACTTCTGACTTTCGAAG+AGG | 0.563453 | 4_1:-81854588 | None:intergenic |
| AAAGAAACAATGATATTCAC+GGG | 0.565624 | 4_1:-81854645 | None:intergenic |
| GATATTCACGGGAAGTGGAG+GGG | 0.568388 | 4_1:-81854634 | None:intergenic |
| GTTCCAGCAGGATATGAAAA+GGG | 0.570325 | 4_1:+81854462 | Msa0577490:CDS |
| GGAAGGCCACTTTGAGTGAG+TGG | 0.570811 | 4_1:+81851844 | Msa0577490:CDS |
| AGTTCTCAAAGGTGTCTTGG+AGG | 0.575693 | 4_1:+81851593 | Msa0577490:CDS |
| TGGAGTGCCAGAGGTGGACA+AGG | 0.582665 | 4_1:+81851900 | Msa0577490:CDS |
| AACAAATAAACTTGATGCTG+TGG | 0.584496 | 4_1:+81854380 | Msa0577490:CDS |
| ACCACTGAGTTAAGACCTGA+AGG | 0.584572 | 4_1:-81852431 | None:intergenic |
| GCTCAATTTCTAAAGAAAGA+CGG | 0.585283 | 4_1:+81853069 | Msa0577490:CDS |
| CATTATTAAACATGACAAGA+TGG | 0.586030 | 4_1:+81854328 | Msa0577490:CDS |
| TCAGGTCTTAACTCAGTGGT+GGG | 0.586914 | 4_1:+81852434 | Msa0577490:CDS |
| ATAGAGCTGATCAAGAGAGA+AGG | 0.596004 | 4_1:+81851643 | Msa0577490:CDS |
| ACTTCTGACTTTCGAAGAGG+AGG | 0.596687 | 4_1:-81854585 | None:intergenic |
| AGCCCAAGGCAAGACACAGT+CGG | 0.598710 | 4_1:+81852506 | Msa0577490:CDS |
| TGGTGCTATCATATTGGGGA+AGG | 0.599173 | 4_1:+81851827 | Msa0577490:CDS |
| AATTTGGTGACTGTGTCACT+TGG | 0.602109 | 4_1:+81852380 | Msa0577490:CDS |
| ATTTGACCACTCACTCAAAG+TGG | 0.602997 | 4_1:-81851850 | None:intergenic |
| CCCTTCAGGTCTTAACTCAG+TGG | 0.604539 | 4_1:+81852430 | Msa0577490:CDS |
| CCAAGTGGTTGGAGTGCCAG+AGG | 0.606261 | 4_1:+81851891 | Msa0577490:CDS |
| ATTCAAAACCCAGTTCTCAA+AGG | 0.608358 | 4_1:+81851582 | Msa0577490:CDS |
| TCAAAGTATATTCCAGAAGG+TGG | 0.608727 | 4_1:+81853042 | Msa0577490:CDS |
| AGTGGTTGGAGTGCCAGAGG+TGG | 0.615681 | 4_1:+81851894 | Msa0577490:CDS |
| TCTTCAACTTAATTTACTAG+CGG | 0.617446 | 4_1:-81854672 | None:intergenic |
| GCATCAAAGTATATTCCAGA+AGG | 0.627357 | 4_1:+81853039 | Msa0577490:CDS |
| TGGTAGTTGATTGCGTAGCA+GGG | 0.628397 | 4_1:-81851446 | None:intergenic |
| GTGGGCATCAAACCAACAGT+TGG | 0.630288 | 4_1:+81852452 | Msa0577490:CDS |
| CTACTAGTGAGACCAACTGT+TGG | 0.631026 | 4_1:-81852464 | None:intergenic |
| AGGGCATAAGATGGAGCCAT+CGG | 0.636027 | 4_1:-81852411 | None:intergenic |
| TTCCTCAATTGAGAATTCAG+TGG | 0.636730 | 4_1:-81851472 | None:intergenic |
| GATCCCTGTGGATCAAGTAG+TGG | 0.645260 | 4_1:+81852335 | Msa0577490:CDS |
| GTGTAATTCCAATCAGCCCA+AGG | 0.647537 | 4_1:+81852492 | Msa0577490:CDS |
| AAATTAAGGGCAAACATGTG+CGG | 0.655310 | 4_1:-81851384 | None:intergenic |
| AATCTGGTGCTATCATATTG+GGG | 0.666419 | 4_1:+81851823 | Msa0577490:CDS |
| TGCTACGCAATCAACTACCA+TGG | 0.679600 | 4_1:+81851449 | Msa0577490:CDS |
| GATGAAATTATCAGGCAGAG+AGG | 0.691759 | 4_1:+81853942 | Msa0577490:intron |
| TATACTTTGGATGATCCCTG+TGG | 0.698609 | 4_1:+81852323 | Msa0577490:CDS |
| AGGTCTAATGGAGCTCCAAG+TGG | 0.700368 | 4_1:+81851876 | Msa0577490:CDS |
| GCATGTTGATGTCACTAACA+TGG | 0.709629 | 4_1:+81854764 | Msa0577490:three_prime_UTR |
| TTGATTGGTCTGAAAACCCG+CGG | 0.710995 | 4_1:+81854787 | Msa0577490:three_prime_UTR |
| GCAGCATCCATATTGTACCG+CGG | 0.711508 | 4_1:-81854804 | None:intergenic |
| TCACTTGGTACTGAAACCGA+TGG | 0.716676 | 4_1:+81852395 | Msa0577490:CDS |
| CCACTGAGTTAAGACCTGAA+GGG | 0.717424 | 4_1:-81852430 | None:intergenic |
| GATCCACTACTTGATCCACA+GGG | 0.772110 | 4_1:-81852338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCAATTTAAATTATTTAGTA+TGG | + | chr4_1:81851983-81852002 | Msa0577490:intron | 10.0% |
| !!! | GACTAATTTTTTTTTTAATA+AGG | - | chr4_1:81852252-81852271 | None:intergenic | 10.0% |
| !! | GATATTAATAAATATTAATC+TGG | + | chr4_1:81854192-81854211 | Msa0577490:intron | 10.0% |
| !!! | TTTTATAAATATCATTGCAA+AGG | - | chr4_1:81853416-81853435 | None:intergenic | 15.0% |
| !!! | AAATTATTTTAGTCTTTCAT+AGG | + | chr4_1:81853481-81853500 | Msa0577490:intron | 15.0% |
| !! | TAATGTAAATGTAAGTAAAT+AGG | - | chr4_1:81853890-81853909 | None:intergenic | 15.0% |
| !!! | TGATTTTGTTTATTTGTTTA+TGG | + | chr4_1:81854162-81854181 | Msa0577490:intron | 15.0% |
| !! | AATTGTTGTATAAAAATTGT+AGG | + | chr4_1:81854227-81854246 | Msa0577490:intron | 15.0% |
| !! | TCTTAGTTAATTTAGTTAAC+TGG | + | chr4_1:81851943-81851962 | Msa0577490:intron | 20.0% |
| !! | TAGACTATAAATTCTATGTT+TGG | - | chr4_1:81852132-81852151 | None:intergenic | 20.0% |
| !! | GCAAGAATATTAGAATATAT+TGG | - | chr4_1:81852855-81852874 | None:intergenic | 20.0% |
| !! | GACTAAAATAATTTCATTCA+AGG | - | chr4_1:81853475-81853494 | None:intergenic | 20.0% |
| !! | ATAACATTGATGAAATTATC+AGG | + | chr4_1:81853934-81853953 | Msa0577490:intron | 20.0% |
| !! | TTTATTTGTTTATGGATACT+TGG | + | chr4_1:81854170-81854189 | Msa0577490:intron | 20.0% |
| !!! | GAAAGATTTTAGAAAGGAAT+CGG | - | chr4_1:81851413-81851432 | None:intergenic | 25.0% |
| !! | TTGATGTTAATTGGTTTCTT+TGG | - | chr4_1:81851527-81851546 | None:intergenic | 25.0% |
| !!! | TTTGAATATTGATTTGGTTG+AGG | - | chr4_1:81851569-81851588 | None:intergenic | 25.0% |
| ! | ATGTTATCCTTAACCAAAAT+AGG | - | chr4_1:81851708-81851727 | None:intergenic | 25.0% |
| ! | AACTAACCTAAACATGATTA+TGG | + | chr4_1:81852161-81852180 | Msa0577490:intron | 25.0% |
| ! | ACTAACCTAAACATGATTAT+GGG | + | chr4_1:81852162-81852181 | Msa0577490:intron | 25.0% |
| !!! | TATATCAAACTTCAAGTTGT+TGG | - | chr4_1:81853263-81853282 | None:intergenic | 25.0% |
| !!! | TCATGTTTTTTTACAAACCA+TGG | + | chr4_1:81853507-81853526 | Msa0577490:intron | 25.0% |
| ! | TCATGTTAGATAAACTATGA+CGG | + | chr4_1:81853534-81853553 | Msa0577490:intron | 25.0% |
| !!! | ATTTGATCTTTATTTTCTGC+AGG | - | chr4_1:81853660-81853679 | None:intergenic | 25.0% |
| ! | AATTTAAGCTGTCCAAAATT+TGG | + | chr4_1:81853790-81853809 | Msa0577490:intron | 25.0% |
| !! | TTGTAACTAATTTTCATGAG+AGG | - | chr4_1:81853852-81853871 | None:intergenic | 25.0% |
| !!! | TTTTGGGTTTTTCTTATTGA+AGG | - | chr4_1:81854126-81854145 | None:intergenic | 25.0% |
| ! | CAATAAGAAAAACCCAAAAT+TGG | + | chr4_1:81854127-81854146 | Msa0577490:CDS | 25.0% |
| !! | CATTTATACTCACCAATTTT+GGG | - | chr4_1:81854142-81854161 | None:intergenic | 25.0% |
| !! | ACATTTATACTCACCAATTT+TGG | - | chr4_1:81854143-81854162 | None:intergenic | 25.0% |
| ! | TGTTGTATAAAAATTGTAGG+AGG | + | chr4_1:81854230-81854249 | Msa0577490:intron | 25.0% |
| ! | CATTATTAAACATGACAAGA+TGG | + | chr4_1:81854328-81854347 | Msa0577490:CDS | 25.0% |
| ! | TAAGCAATTTCAATCAACTT+TGG | - | chr4_1:81854531-81854550 | None:intergenic | 25.0% |
| ! | AAAGAAACAATGATATTCAC+GGG | - | chr4_1:81854648-81854667 | None:intergenic | 25.0% |
| ! | CAAAGAAACAATGATATTCA+CGG | - | chr4_1:81854649-81854668 | None:intergenic | 25.0% |
| ! | TCTTCAACTTAATTTACTAG+CGG | - | chr4_1:81854675-81854694 | None:intergenic | 25.0% |
| AAGGAATCGGAAGAAATTAA+GGG | - | chr4_1:81851400-81851419 | None:intergenic | 30.0% | |
| AAAGGAATCGGAAGAAATTA+AGG | - | chr4_1:81851401-81851420 | None:intergenic | 30.0% | |
| !! | CTGGTTGAAAGATTTTAGAA+AGG | - | chr4_1:81851419-81851438 | None:intergenic | 30.0% |
| CAAGTTGTCTTGATGTTAAT+TGG | - | chr4_1:81851536-81851555 | None:intergenic | 30.0% | |
| !!! | CTGGGTTTTGAATATTGATT+TGG | - | chr4_1:81851575-81851594 | None:intergenic | 30.0% |
| !!! | TGGAATACCTATTTTGGTTA+AGG | + | chr4_1:81851698-81851717 | Msa0577490:CDS | 30.0% |
| TAAGGATAACATTGCAACTA+AGG | + | chr4_1:81851716-81851735 | Msa0577490:CDS | 30.0% | |
| AATCAATTCAGTCATTCACT+CGG | - | chr4_1:81852031-81852050 | None:intergenic | 30.0% | |
| ATCAACTCACTTTCAATATC+AGG | - | chr4_1:81852061-81852080 | None:intergenic | 30.0% | |
| !! | ATTGAAAGTGAGTTGATCAA+AGG | + | chr4_1:81852064-81852083 | Msa0577490:intron | 30.0% |
| TTTGCAGAATCCATATACTT+TGG | + | chr4_1:81852310-81852329 | Msa0577490:intron | 30.0% | |
| AATATCAGTAGCTGCAAATT+TGG | + | chr4_1:81852364-81852383 | Msa0577490:CDS | 30.0% | |
| TACTAAACGCAATAGAAATG+TGG | - | chr4_1:81852553-81852572 | None:intergenic | 30.0% | |
| ACTTCTGATAAGAGCAAAAT+TGG | + | chr4_1:81852764-81852783 | Msa0577490:intron | 30.0% | |
| GAAAAATTGGAAATGCTTAC+AGG | + | chr4_1:81852829-81852848 | Msa0577490:intron | 30.0% | |
| ! | TAGAACAATGTCTTTTGACA+GGG | - | chr4_1:81852896-81852915 | None:intergenic | 30.0% |
| ! | TTAGAACAATGTCTTTTGAC+AGG | - | chr4_1:81852897-81852916 | None:intergenic | 30.0% |
| ! | GCTCAATTTCTAAAGAAAGA+CGG | + | chr4_1:81853069-81853088 | Msa0577490:CDS | 30.0% |
| !! | TTTTAGAAATGACACTTTCC+CGG | + | chr4_1:81853134-81853153 | Msa0577490:CDS | 30.0% |
| ! | TGTAGCTTGAATGTTTTATC+CGG | - | chr4_1:81853156-81853175 | None:intergenic | 30.0% |
| ATGACTATACACAATTCTCA+TGG | + | chr4_1:81853218-81853237 | Msa0577490:intron | 30.0% | |
| !! | ATGGAGTTGTTTGTTGTTAT+CGG | + | chr4_1:81853237-81853256 | Msa0577490:intron | 30.0% |
| ! | TTATCTAACATGATTAGCCA+TGG | - | chr4_1:81853527-81853546 | None:intergenic | 30.0% |
| !! | TCACTTTTGTAATTGAGTCT+TGG | - | chr4_1:81853575-81853594 | None:intergenic | 30.0% |
| TCCTGTGTTCATTACTTAAT+CGG | + | chr4_1:81853746-81853765 | Msa0577490:intron | 30.0% | |
| TTCATAGCAATATCTTCACT+TGG | - | chr4_1:81854023-81854042 | None:intergenic | 30.0% | |
| AACAAATAAACTTGATGCTG+TGG | + | chr4_1:81854380-81854399 | Msa0577490:CDS | 30.0% | |
| ATGCTACTAAAGGATGAAAA+AGG | - | chr4_1:81854411-81854430 | None:intergenic | 30.0% | |
| AATAGCAAGTATGCTACTAA+AGG | - | chr4_1:81854421-81854440 | None:intergenic | 30.0% | |
| !! | TTTAGTAGCATACTTGCTAT+TGG | + | chr4_1:81854420-81854439 | Msa0577490:CDS | 30.0% |
| !!! | ATTTGTTTTGGAGGTTTGAA+AGG | + | chr4_1:81854498-81854517 | Msa0577490:CDS | 30.0% |
| !!! | TTTGTTTTGGAGGTTTGAAA+GGG | + | chr4_1:81854499-81854518 | Msa0577490:CDS | 30.0% |
| ! | TAGATGATTTAGGATTGTTC+AGG | - | chr4_1:81854737-81854756 | None:intergenic | 30.0% |
| TGCACTTCTATAGATGATTT+AGG | - | chr4_1:81854747-81854766 | None:intergenic | 30.0% | |
| ATACCAGAATGCATTAATGT+TGG | + | chr4_1:81854884-81854903 | Msa0577490:intron | 30.0% | |
| TACCAGAATGCATTAATGTT+GGG | + | chr4_1:81854885-81854904 | Msa0577490:intron | 30.0% | |
| AAATTAAGGGCAAACATGTG+CGG | - | chr4_1:81851387-81851406 | None:intergenic | 35.0% | |
| TTCCTCAATTGAGAATTCAG+TGG | - | chr4_1:81851475-81851494 | None:intergenic | 35.0% | |
| ATTCAAAACCCAGTTCTCAA+AGG | + | chr4_1:81851582-81851601 | Msa0577490:CDS | 35.0% | |
| ! | GTTGCATGGAATACCTATTT+TGG | + | chr4_1:81851692-81851711 | Msa0577490:CDS | 35.0% |
| !! | AGGTGTTGTTACCAAGTTAA+GGG | + | chr4_1:81851800-81851819 | Msa0577490:CDS | 35.0% |
| !! | GAATCTGGTGCTATCATATT+GGG | + | chr4_1:81851822-81851841 | Msa0577490:CDS | 35.0% |
| !! | AATCTGGTGCTATCATATTG+GGG | + | chr4_1:81851823-81851842 | Msa0577490:CDS | 35.0% |
| TGGTCAAATTACAGGTCTAA+TGG | + | chr4_1:81851864-81851883 | Msa0577490:CDS | 35.0% | |
| GTTCATAGTTACCGATAAGT+GGG | + | chr4_1:81852005-81852024 | Msa0577490:intron | 35.0% | |
| !! | AAAGTGAGTTGATCAAAGGT+AGG | + | chr4_1:81852068-81852087 | Msa0577490:intron | 35.0% |
| !! | AAGTGAGTTGATCAAAGGTA+GGG | + | chr4_1:81852069-81852088 | Msa0577490:intron | 35.0% |
| ! | ATCAAAGGTAGGGATGATTT+TGG | + | chr4_1:81852079-81852098 | Msa0577490:intron | 35.0% |
| ! | TCAAAGGTAGGGATGATTTT+GGG | + | chr4_1:81852080-81852099 | Msa0577490:intron | 35.0% |
| ACCGAAATCATTTCCAAAGT+CGG | + | chr4_1:81852103-81852122 | Msa0577490:intron | 35.0% | |
| ! | TCCGACTTTGGAAATGATTT+CGG | - | chr4_1:81852107-81852126 | None:intergenic | 35.0% |
| AACCTAAACATGATTATGGG+AGG | + | chr4_1:81852165-81852184 | Msa0577490:intron | 35.0% | |
| TACCTCCCATAATCATGTTT+AGG | - | chr4_1:81852170-81852189 | None:intergenic | 35.0% | |
| !! | GAAATAAGTGAGAGAGCATT+AGG | + | chr4_1:81852202-81852221 | Msa0577490:intron | 35.0% |
| ! | CACATTTGTTTCTCTCTATC+AGG | - | chr4_1:81852684-81852703 | None:intergenic | 35.0% |
| CTGATAAGAGCAAAATTGGA+TGG | + | chr4_1:81852768-81852787 | Msa0577490:intron | 35.0% | |
| AATGTGTAACATCAGTTGTG+TGG | + | chr4_1:81852921-81852940 | Msa0577490:intron | 35.0% | |
| TATGTTCTTGAAACCATAGC+AGG | + | chr4_1:81852985-81853004 | Msa0577490:CDS | 35.0% | |
| GCATCAAAGTATATTCCAGA+AGG | + | chr4_1:81853039-81853058 | Msa0577490:CDS | 35.0% | |
| TCAAAGTATATTCCAGAAGG+TGG | + | chr4_1:81853042-81853061 | Msa0577490:CDS | 35.0% | |
| !! | CTAAAGAAAGACGGACTAAT+AGG | + | chr4_1:81853078-81853097 | Msa0577490:CDS | 35.0% |
| GGACTAATAGGAAAGAGAAT+AGG | + | chr4_1:81853090-81853109 | Msa0577490:CDS | 35.0% | |
| ! | GTAGCTTGAATGTTTTATCC+GGG | - | chr4_1:81853155-81853174 | None:intergenic | 35.0% |
| ! | TTAGCTACCTTAACGTTTTC+AGG | - | chr4_1:81853179-81853198 | None:intergenic | 35.0% |
| TTTCATTCAAGGATGCTGAT+AGG | - | chr4_1:81853464-81853483 | None:intergenic | 35.0% | |
| ! | CTTTTGTAATTGAGTCTTGG+TGG | - | chr4_1:81853572-81853591 | None:intergenic | 35.0% |
| TCCGATTAAGTAATGAACAC+AGG | - | chr4_1:81853750-81853769 | None:intergenic | 35.0% | |
| TTGGACAGCTTAAATTGTGT+TGG | - | chr4_1:81853786-81853805 | None:intergenic | 35.0% | |
| AAGTAAATAGGTCTGCAGTA+TGG | - | chr4_1:81853878-81853897 | None:intergenic | 35.0% | |
| TAGGAGGAACTTGATAAGTA+TGG | + | chr4_1:81854246-81854265 | Msa0577490:intron | 35.0% | |
| TTGCAAGCTGAAAAGACAAA+TGG | + | chr4_1:81854282-81854301 | Msa0577490:CDS | 35.0% | |
| GCTGAAAAGACAAATGGAAT+TGG | + | chr4_1:81854288-81854307 | Msa0577490:CDS | 35.0% | |
| ATGACAAGATGGTCAGAAAA+TGG | + | chr4_1:81854339-81854358 | Msa0577490:CDS | 35.0% | |
| TGACAAGATGGTCAGAAAAT+GGG | + | chr4_1:81854340-81854359 | Msa0577490:CDS | 35.0% | |
| !! | CAGCCATTTGGAATTTGTTT+TGG | + | chr4_1:81854486-81854505 | Msa0577490:CDS | 35.0% |
| CCTCCAAAACAAATTCCAAA+TGG | - | chr4_1:81854492-81854511 | None:intergenic | 35.0% | |
| !!! | CCATTTGGAATTTGTTTTGG+AGG | + | chr4_1:81854489-81854508 | Msa0577490:CDS | 35.0% |
| ATGTCACTAACATGGTTGAT+TGG | + | chr4_1:81854772-81854791 | Msa0577490:three_prime_UTR | 35.0% | |
| GTATGGTGAAGTTGTATTCA+TGG | + | chr4_1:81854832-81854851 | Msa0577490:three_prime_UTR | 35.0% | |
| TTCCCAACATTAATGCATTC+TGG | - | chr4_1:81854890-81854909 | None:intergenic | 35.0% | |
| AATTGAGAATTCAGTGGCCA+TGG | - | chr4_1:81851469-81851488 | None:intergenic | 40.0% | |
| ATAGAGCTGATCAAGAGAGA+AGG | + | chr4_1:81851643-81851662 | Msa0577490:CDS | 40.0% | |
| TAGAGCTGATCAAGAGAGAA+GGG | + | chr4_1:81851644-81851663 | Msa0577490:CDS | 40.0% | |
| GATAAGCTAAACACTACTGC+AGG | + | chr4_1:81851738-81851757 | Msa0577490:CDS | 40.0% | |
| !! | CAGGTGTTGTTACCAAGTTA+AGG | + | chr4_1:81851799-81851818 | Msa0577490:CDS | 40.0% |
| GTTACCAAGTTAAGGGAATC+TGG | + | chr4_1:81851807-81851826 | Msa0577490:CDS | 40.0% | |
| !! | GGAATCTGGTGCTATCATAT+TGG | + | chr4_1:81851821-81851840 | Msa0577490:CDS | 40.0% |
| ATTTGACCACTCACTCAAAG+TGG | - | chr4_1:81851853-81851872 | None:intergenic | 40.0% | |
| TGAGTGAGTGGTCAAATTAC+AGG | + | chr4_1:81851856-81851875 | Msa0577490:CDS | 40.0% | |
| GGTTCATAGTTACCGATAAG+TGG | + | chr4_1:81852004-81852023 | Msa0577490:intron | 40.0% | |
| !! | ATAAGTGAGAGAGCATTAGG+TGG | + | chr4_1:81852205-81852224 | Msa0577490:intron | 40.0% |
| !! | TAAGTGAGAGAGCATTAGGT+GGG | + | chr4_1:81852206-81852225 | Msa0577490:intron | 40.0% |
| CAGGGATCATCCAAAGTATA+TGG | - | chr4_1:81852323-81852342 | None:intergenic | 40.0% | |
| TATACTTTGGATGATCCCTG+TGG | + | chr4_1:81852323-81852342 | Msa0577490:CDS | 40.0% | |
| ! | AATTTGGTGACTGTGTCACT+TGG | + | chr4_1:81852380-81852399 | Msa0577490:CDS | 40.0% |
| !! | ACACACACAAGATTTTGGCA+TGG | - | chr4_1:81852803-81852822 | None:intergenic | 40.0% |
| TGTGTGTGTGCGTGAAAAAT+TGG | + | chr4_1:81852816-81852835 | Msa0577490:intron | 40.0% | |
| ! | ACAATGTCTTTTGACAGGGA+AGG | - | chr4_1:81852892-81852911 | None:intergenic | 40.0% |
| !!! | TCAGTTGTGTGGTTTTGTAC+AGG | + | chr4_1:81852932-81852951 | Msa0577490:intron | 40.0% |
| ! | TTTTGTACAGGCCAATTTGC+AGG | + | chr4_1:81852944-81852963 | Msa0577490:intron | 40.0% |
| TCTGATACAGTCCTGCAAAT+TGG | - | chr4_1:81852958-81852977 | None:intergenic | 40.0% | |
| AGCTACACCTGAAAACGTTA+AGG | + | chr4_1:81853169-81853188 | Msa0577490:CDS | 40.0% | |
| !! | AATTGAGTCTTGGTGGTGTA+TGG | - | chr4_1:81853565-81853584 | None:intergenic | 40.0% |
| ! | TGTCACCATCGTCCAAATTT+TGG | - | chr4_1:81853805-81853824 | None:intergenic | 40.0% |
| GATGAAATTATCAGGCAGAG+AGG | + | chr4_1:81853942-81853961 | Msa0577490:intron | 40.0% | |
| GTGATGCTACTAAGTCTTTG+AGG | - | chr4_1:81854076-81854095 | None:intergenic | 40.0% | |
| CAGCTTGCAACATGATATCT+TGG | - | chr4_1:81854272-81854291 | None:intergenic | 40.0% | |
| !! | AGTAGCATACTTGCTATTGG+AGG | + | chr4_1:81854423-81854442 | Msa0577490:CDS | 40.0% |
| TGTTCCAGCAGGATATGAAA+AGG | + | chr4_1:81854461-81854480 | Msa0577490:CDS | 40.0% | |
| GTTCCAGCAGGATATGAAAA+GGG | + | chr4_1:81854462-81854481 | Msa0577490:CDS | 40.0% | |
| TATGAAAAGGGTCAGCCATT+TGG | + | chr4_1:81854474-81854493 | Msa0577490:CDS | 40.0% | |
| CAAACTTCTGACTTTCGAAG+AGG | - | chr4_1:81854591-81854610 | None:intergenic | 40.0% | |
| ACAATGATATTCACGGGAAG+TGG | - | chr4_1:81854642-81854661 | None:intergenic | 40.0% | |
| GCATGTTGATGTCACTAACA+TGG | + | chr4_1:81854764-81854783 | Msa0577490:three_prime_UTR | 40.0% | |
| TATGGATGCTGCTACATGTA+TGG | + | chr4_1:81854815-81854834 | Msa0577490:three_prime_UTR | 40.0% | |
| GGAAGTTCACCAAGTAAGAT+GGG | + | chr4_1:81854906-81854925 | Msa0577490:intron | 40.0% | |
| TGTGTTGAACCCATCTTACT+TGG | - | chr4_1:81854918-81854937 | None:intergenic | 40.0% | |
| TGGTAGTTGATTGCGTAGCA+GGG | - | chr4_1:81851449-81851468 | None:intergenic | 45.0% | |
| ATGGTAGTTGATTGCGTAGC+AGG | - | chr4_1:81851450-81851469 | None:intergenic | 45.0% | |
| TGCTACGCAATCAACTACCA+TGG | + | chr4_1:81851449-81851468 | Msa0577490:CDS | 45.0% | |
| GGCCACTGAATTCTCAATTG+AGG | + | chr4_1:81851470-81851489 | Msa0577490:CDS | 45.0% | |
| ! | CCAAGACACCTTTGAGAACT+GGG | - | chr4_1:81851593-81851612 | None:intergenic | 45.0% |
| ! | TCCAAGACACCTTTGAGAAC+TGG | - | chr4_1:81851594-81851613 | None:intergenic | 45.0% |
| !! | AGTTCTCAAAGGTGTCTTGG+AGG | + | chr4_1:81851593-81851612 | Msa0577490:CDS | 45.0% |
| TCTGCTTGTGCTAATGCATC+TGG | - | chr4_1:81851624-81851643 | None:intergenic | 45.0% | |
| ! | AAGCACCTGGTTCTCTTTCA+AGG | + | chr4_1:81851670-81851689 | Msa0577490:CDS | 45.0% |
| TGCAACCTTGAAAGAGAACC+AGG | - | chr4_1:81851678-81851697 | None:intergenic | 45.0% | |
| GGTTCTCTTTCAAGGTTGCA+TGG | + | chr4_1:81851678-81851697 | Msa0577490:CDS | 45.0% | |
| ! | TTTTGCATTGCTTGGCTCAG+TGG | + | chr4_1:81851764-81851783 | Msa0577490:CDS | 45.0% |
| GTAACAACACCTGCATCTCT+TGG | - | chr4_1:81851792-81851811 | None:intergenic | 45.0% | |
| AGCACCAGATTCCCTTAACT+TGG | - | chr4_1:81851814-81851833 | None:intergenic | 45.0% | |
| !! | TGGTGCTATCATATTGGGGA+AGG | + | chr4_1:81851827-81851846 | Msa0577490:CDS | 45.0% |
| ! | CTATGTTTGGCTTCCGACTT+TGG | - | chr4_1:81852119-81852138 | None:intergenic | 45.0% |
| !! | GGGCGTTTTGGTAGATTATG+AGG | + | chr4_1:81852226-81852245 | Msa0577490:intron | 45.0% |
| GATCCACTACTTGATCCACA+GGG | - | chr4_1:81852341-81852360 | None:intergenic | 45.0% | |
| TGATCCACTACTTGATCCAC+AGG | - | chr4_1:81852342-81852361 | None:intergenic | 45.0% | |
| ! | TCACTTGGTACTGAAACCGA+TGG | + | chr4_1:81852395-81852414 | Msa0577490:CDS | 45.0% |
| ! | AAGACCTGAAGGGCATAAGA+TGG | - | chr4_1:81852423-81852442 | None:intergenic | 45.0% |
| CCACTGAGTTAAGACCTGAA+GGG | - | chr4_1:81852433-81852452 | None:intergenic | 45.0% | |
| ACCACTGAGTTAAGACCTGA+AGG | - | chr4_1:81852434-81852453 | None:intergenic | 45.0% | |
| TTCAGGTCTTAACTCAGTGG+TGG | + | chr4_1:81852433-81852452 | Msa0577490:CDS | 45.0% | |
| TCAGGTCTTAACTCAGTGGT+GGG | + | chr4_1:81852434-81852453 | Msa0577490:CDS | 45.0% | |
| CTACTAGTGAGACCAACTGT+TGG | - | chr4_1:81852467-81852486 | None:intergenic | 45.0% | |
| GTGTAATTCCAATCAGCCCA+AGG | + | chr4_1:81852492-81852511 | Msa0577490:CDS | 45.0% | |
| AATGTGGACAAACGCTGTAC+AGG | - | chr4_1:81852537-81852556 | None:intergenic | 45.0% | |
| ! | CGCACACACACACAAGATTT+TGG | - | chr4_1:81852808-81852827 | None:intergenic | 45.0% |
| !! | GAAAGTGTCAATGCCTGCTA+TGG | - | chr4_1:81853001-81853020 | None:intergenic | 45.0% |
| AATTGAGCATAGCCACCTTC+TGG | - | chr4_1:81853057-81853076 | None:intergenic | 45.0% | |
| GCTGTCCAAAATTTGGACGA+TGG | + | chr4_1:81853797-81853816 | Msa0577490:intron | 45.0% | |
| !! | CTTGCTATTGGAGGTTATCC+TGG | + | chr4_1:81854432-81854451 | Msa0577490:CDS | 45.0% |
| ! | TGACCCTTTTCATATCCTGC+TGG | - | chr4_1:81854468-81854487 | None:intergenic | 45.0% |
| ACTTCTGACTTTCGAAGAGG+AGG | - | chr4_1:81854588-81854607 | None:intergenic | 45.0% | |
| TGATATTCACGGGAAGTGGA+GGG | - | chr4_1:81854638-81854657 | None:intergenic | 45.0% | |
| ATGATATTCACGGGAAGTGG+AGG | - | chr4_1:81854639-81854658 | None:intergenic | 45.0% | |
| !! | TTGATTGGTCTGAAAACCCG+CGG | + | chr4_1:81854787-81854806 | Msa0577490:three_prime_UTR | 45.0% |
| TGAAAACCCGCGGTACAATA+TGG | + | chr4_1:81854797-81854816 | Msa0577490:three_prime_UTR | 45.0% | |
| GGGAAGTTCACCAAGTAAGA+TGG | + | chr4_1:81854905-81854924 | Msa0577490:intron | 45.0% | |
| AGTTGATTGCGTAGCAGGGA+AGG | - | chr4_1:81851445-81851464 | None:intergenic | 50.0% | |
| !! | CCCAGTTCTCAAAGGTGTCT+TGG | + | chr4_1:81851590-81851609 | Msa0577490:CDS | 50.0% |
| !! | GAGAGAAGGGAAAAAGCACC+TGG | + | chr4_1:81851657-81851676 | Msa0577490:CDS | 50.0% |
| ! | GCAGGCTCTTTTGCATTGCT+TGG | + | chr4_1:81851756-81851775 | Msa0577490:CDS | 50.0% |
| AGGTCTAATGGAGCTCCAAG+TGG | + | chr4_1:81851876-81851895 | Msa0577490:CDS | 50.0% | |
| CTAATGGAGCTCCAAGTGGT+TGG | + | chr4_1:81851880-81851899 | Msa0577490:CDS | 50.0% | |
| TACCTTTCCTTGTCCACCTC+TGG | - | chr4_1:81851910-81851929 | None:intergenic | 50.0% | |
| CATTCACTCGGCCCACTTAT+CGG | - | chr4_1:81852019-81852038 | None:intergenic | 50.0% | |
| !! | AGAGCATTAGGTGGGCGTTT+TGG | + | chr4_1:81852214-81852233 | Msa0577490:intron | 50.0% |
| GATCCCTGTGGATCAAGTAG+TGG | + | chr4_1:81852335-81852354 | Msa0577490:CDS | 50.0% | |
| AGGGCATAAGATGGAGCCAT+CGG | - | chr4_1:81852414-81852433 | None:intergenic | 50.0% | |
| CCCTTCAGGTCTTAACTCAG+TGG | + | chr4_1:81852430-81852449 | Msa0577490:CDS | 50.0% | |
| GTGGGCATCAAACCAACAGT+TGG | + | chr4_1:81852452-81852471 | Msa0577490:CDS | 50.0% | |
| ! | GTTGGTCTCACTAGTAGAGC+AGG | + | chr4_1:81852470-81852489 | Msa0577490:CDS | 50.0% |
| GCTCCAACTTTCTGCTAGAG+AGG | + | chr4_1:81853633-81853652 | Msa0577490:intron | 50.0% | |
| GGTCCTCTCTAGCAGAAAGT+TGG | - | chr4_1:81853639-81853658 | None:intergenic | 50.0% | |
| AGCATCACCAGTGAGAAGCT+TGG | + | chr4_1:81854088-81854107 | Msa0577490:CDS | 50.0% | |
| ACATCTGCCAAGCTTCTCAC+TGG | - | chr4_1:81854098-81854117 | None:intergenic | 50.0% | |
| CCTGCTGGAACAATGATTCC+AGG | - | chr4_1:81854453-81854472 | None:intergenic | 50.0% | |
| CCTGGAATCATTGTTCCAGC+AGG | + | chr4_1:81854450-81854469 | Msa0577490:CDS | 50.0% | |
| TCTGACTTTCGAAGAGGAGG+TGG | - | chr4_1:81854585-81854604 | None:intergenic | 50.0% | |
| ATATTCACGGGAAGTGGAGG+GGG | - | chr4_1:81854636-81854655 | None:intergenic | 50.0% | |
| GATATTCACGGGAAGTGGAG+GGG | - | chr4_1:81854637-81854656 | None:intergenic | 50.0% | |
| CAGCATCCATATTGTACCGC+GGG | - | chr4_1:81854806-81854825 | None:intergenic | 50.0% | |
| GCAGCATCCATATTGTACCG+CGG | - | chr4_1:81854807-81854826 | None:intergenic | 50.0% | |
| TGCGTAGCAGGGAAGGTAAC+TGG | - | chr4_1:81851438-81851457 | None:intergenic | 55.0% | |
| ! | TCAGTGGTGCCAAGAGATGC+AGG | + | chr4_1:81851780-81851799 | Msa0577490:CDS | 55.0% |
| ! | GGAAGGCCACTTTGAGTGAG+TGG | + | chr4_1:81851844-81851863 | Msa0577490:CDS | 55.0% |
| TGCCAGAGGTGGACAAGGAA+AGG | + | chr4_1:81851905-81851924 | Msa0577490:CDS | 55.0% | |
| GGCTCCATCTTATGCCCTTC+AGG | + | chr4_1:81852416-81852435 | Msa0577490:CDS | 55.0% | |
| GTGTCTTGCCTTGGGCTGAT+TGG | - | chr4_1:81852503-81852522 | None:intergenic | 55.0% | |
| AGCCCAAGGCAAGACACAGT+CGG | + | chr4_1:81852506-81852525 | Msa0577490:CDS | 55.0% | |
| ACCCGACTGTGTCTTGCCTT+GGG | - | chr4_1:81852511-81852530 | None:intergenic | 55.0% | |
| TACCCGACTGTGTCTTGCCT+TGG | - | chr4_1:81852512-81852531 | None:intergenic | 55.0% | |
| !! | CAGGCAGAGAGGTGCAGTTT+TGG | + | chr4_1:81853953-81853972 | Msa0577490:intron | 55.0% |
| CCTCTGGCACTCCAACCACT+TGG | - | chr4_1:81851894-81851913 | None:intergenic | 60.0% | |
| ! | CCAAGTGGTTGGAGTGCCAG+AGG | + | chr4_1:81851891-81851910 | Msa0577490:CDS | 60.0% |
| ! | AGTGGTTGGAGTGCCAGAGG+TGG | + | chr4_1:81851894-81851913 | Msa0577490:CDS | 60.0% |
| ! | TGGAGTGCCAGAGGTGGACA+AGG | + | chr4_1:81851900-81851919 | Msa0577490:CDS | 60.0% |
| GCCCAAGGCAAGACACAGTC+GGG | + | chr4_1:81852507-81852526 | Msa0577490:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 81851369 | 81855032 | 81851369 | ID=Msa0577490;Name=Msa0577490 |
| chr4_1 | mRNA | 81851369 | 81855032 | 81851369 | ID=Msa0577490-mRNA-1;Parent=Msa0577490;Name=Msa0577490-mRNA-1;_AED=0.43;_eAED=0.43;_QI=21|1|1|1|0.8|0.66|6|357|513 |
| chr4_1 | exon | 81851369 | 81851926 | 81851369 | ID=Msa0577490-mRNA-1:exon:29505;Parent=Msa0577490-mRNA-1 |
| chr4_1 | exon | 81852317 | 81852528 | 81852317 | ID=Msa0577490-mRNA-1:exon:29506;Parent=Msa0577490-mRNA-1 |
| chr4_1 | exon | 81852954 | 81853190 | 81852954 | ID=Msa0577490-mRNA-1:exon:29507;Parent=Msa0577490-mRNA-1 |
| chr4_1 | exon | 81853956 | 81854148 | 81853956 | ID=Msa0577490-mRNA-1:exon:29508;Parent=Msa0577490-mRNA-1 |
| chr4_1 | exon | 81854249 | 81854883 | 81854249 | ID=Msa0577490-mRNA-1:exon:29509;Parent=Msa0577490-mRNA-1 |
| chr4_1 | exon | 81854948 | 81855032 | 81854948 | ID=Msa0577490-mRNA-1:exon:29510;Parent=Msa0577490-mRNA-1 |
| chr4_1 | five_prime_UTR | 81851369 | 81851389 | 81851369 | ID=Msa0577490-mRNA-1:five_prime_utr;Parent=Msa0577490-mRNA-1 |
| chr4_1 | CDS | 81851390 | 81851926 | 81851390 | ID=Msa0577490-mRNA-1:cds;Parent=Msa0577490-mRNA-1 |
| chr4_1 | CDS | 81852317 | 81852528 | 81852317 | ID=Msa0577490-mRNA-1:cds;Parent=Msa0577490-mRNA-1 |
| chr4_1 | CDS | 81852954 | 81853190 | 81852954 | ID=Msa0577490-mRNA-1:cds;Parent=Msa0577490-mRNA-1 |
| chr4_1 | CDS | 81853956 | 81854148 | 81853956 | ID=Msa0577490-mRNA-1:cds;Parent=Msa0577490-mRNA-1 |
| chr4_1 | CDS | 81854249 | 81854611 | 81854249 | ID=Msa0577490-mRNA-1:cds;Parent=Msa0577490-mRNA-1 |
| chr4_1 | three_prime_UTR | 81854612 | 81854883 | 81854612 | ID=Msa0577490-mRNA-1:three_prime_utr;Parent=Msa0577490-mRNA-1 |
| chr4_1 | three_prime_UTR | 81854948 | 81855032 | 81854948 | ID=Msa0577490-mRNA-1:three_prime_utr;Parent=Msa0577490-mRNA-1 |
| Gene Sequence |
| Protein sequence |
