Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643110 | XP_024636966.1 | 97.817 | 229 | 5 | 0 | 1 | 229 | 48 | 276 | 9.44e-163 | 461 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643110 | sp|Q499R4|YRDC_RAT | 47.716 | 197 | 95 | 3 | 30 | 221 | 74 | 267 | 8.06e-52 | 172 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643110 | A0A396I555 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 5.96e-163 | 458 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0621890 | Msa0643110 | 0.812156 | 4.884070e-51 | -8.615850e-47 |
| Msa0643050 | Msa0643110 | 0.803256 | 3.801275e-49 | -8.615850e-47 |
| Msa0643110 | Msa1220230 | 0.818991 | 1.468071e-52 | -8.615850e-47 |
| Msa0643110 | Msa1254950 | 0.825026 | 5.865972e-54 | -8.615850e-47 |
| Msa0643110 | Msa1295690 | 0.821812 | 3.309525e-53 | -8.615850e-47 |
| Msa0643110 | Msa1329990 | 0.801635 | 8.202992e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643110 | MtrunA17_Chr4g0029211 | 97.817 | 229 | 5 | 0 | 1 | 229 | 1 | 229 | 1.15e-166 | 458 |
| Msa0643110 | MtrunA17_Chr7g0228161 | 30.342 | 234 | 130 | 10 | 17 | 223 | 101 | 328 | 9.17e-12 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0643110 | AT5G60590.2 | 75.342 | 219 | 54 | 0 | 1 | 219 | 50 | 268 | 9.52e-120 | 342 |
| Msa0643110 | AT5G60590.3 | 74.561 | 114 | 29 | 0 | 1 | 114 | 50 | 163 | 9.97e-57 | 179 |
| Msa0643110 | AT5G60590.1 | 74.336 | 113 | 29 | 0 | 1 | 113 | 50 | 162 | 3.94e-56 | 176 |
Find 90 sgRNAs with CRISPR-Local
Find 259 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AACCAATGGCATAGTATTTC+AGG | 0.245732 | 4_3:-45594395 | Msa0643110:intron |
| TATTCTGTAATAGTGAAATT+AGG | 0.277317 | 4_3:-45590472 | Msa0643110:three_prime_UTR |
| AAGTTATACCATAGGATCTT+TGG | 0.291745 | 4_3:-45590575 | Msa0643110:three_prime_UTR |
| AGGCTCATTGCCCGTGGTTC+AGG | 0.295347 | 4_3:-45591713 | Msa0643110:CDS |
| CATTTGCAGTGCCACGTTCT+AGG | 0.302065 | 4_3:-45590681 | Msa0643110:three_prime_UTR |
| AGTTATACCATAGGATCTTT+GGG | 0.323252 | 4_3:-45590574 | Msa0643110:three_prime_UTR |
| ATCAAAATCAAAGAATTAGA+AGG | 0.334723 | 4_3:-45594334 | Msa0643110:five_prime_UTR |
| GTGTAGAGAGGTTACCTTCC+AGG | 0.342790 | 4_3:+45591509 | None:intergenic |
| GGTATAACTTATACACTTCA+TGG | 0.355899 | 4_3:+45590588 | None:intergenic |
| CTGCTTGATTCCCTCCTACC+AGG | 0.360293 | 4_3:-45592052 | Msa0643110:CDS |
| GTTCCCACTGATACACTATA+TGG | 0.365097 | 4_3:-45594173 | Msa0643110:CDS |
| GCAGCATAAGCATCTGTTGC+AGG | 0.370889 | 4_3:+45594236 | None:intergenic |
| GGAAGAGACTGTTGCCATCT+TGG | 0.380173 | 4_3:-45590769 | Msa0643110:CDS |
| TACGGTTGATAAAATACATT+TGG | 0.387633 | 4_3:-45590373 | Msa0643110:three_prime_UTR |
| CCGTGGTTCAGGAACTGCTT+TGG | 0.388081 | 4_3:-45591702 | Msa0643110:CDS |
| CTAAGTATCTTGTATTTGTA+TGG | 0.388441 | 4_3:+45591533 | None:intergenic |
| TTATCACTTAGTAACATGTT+AGG | 0.395123 | 4_3:+45590439 | None:intergenic |
| CTAGAACGTGGCACTGCAAA+TGG | 0.395726 | 4_3:+45590682 | None:intergenic |
| GCTCATTGGAAGCAATTAAC+AGG | 0.396765 | 4_3:-45592180 | Msa0643110:CDS |
| CACTTAGATTTGCACTGGTA+AGG | 0.398209 | 4_3:+45591678 | None:intergenic |
| CACTGTGCTTCTGTTTATGA+TGG | 0.400620 | 4_3:-45591608 | Msa0643110:CDS |
| TCTTTGATGCAAACACTACT+TGG | 0.413667 | 4_3:+45591650 | None:intergenic |
| TGCCAGATTGCAATTTCATT+AGG | 0.414657 | 4_3:-45591733 | Msa0643110:CDS |
| TTGGGTCTTGATGTTAAAAC+TGG | 0.431335 | 4_3:-45594269 | Msa0643110:CDS |
| TAGAAACCGTCCTTGTTGTA+TGG | 0.431764 | 4_3:+45594684 | None:intergenic |
| TATTTCAGGTGTGTGTAGAT+TGG | 0.435452 | 4_3:-45594381 | Msa0643110:five_prime_UTR |
| ATGGATTTGCTTGTGATGCT+TGG | 0.438588 | 4_3:-45594154 | Msa0643110:intron |
| AAAAGCACATTATGAATTAG+TGG | 0.440347 | 4_3:-45590345 | Msa0643110:three_prime_UTR |
| TTGCTTCCATCTGGTCGTGC+AGG | 0.447509 | 4_3:-45591581 | Msa0643110:CDS |
| ACTCCTATACTATCGAATCC+TGG | 0.447790 | 4_3:+45591761 | None:intergenic |
| GTTTCAAACATTGTCAAATG+TGG | 0.455160 | 4_3:+45590539 | None:intergenic |
| GATGGTGGTTTGCTTCCATC+TGG | 0.455529 | 4_3:-45591590 | Msa0643110:CDS |
| GCAGTTGAAGCTTTGAAAGC+TGG | 0.459110 | 4_3:-45594209 | Msa0643110:CDS |
| TGAAACAGACACATGTGGTC+TGG | 0.470574 | 4_3:-45590522 | Msa0643110:three_prime_UTR |
| CTCACTGATCATTTACCTCA+TGG | 0.480763 | 4_3:-45592076 | Msa0643110:CDS |
| TGTGCTTCTGTTTATGATGG+TGG | 0.491904 | 4_3:-45591605 | Msa0643110:CDS |
| TGCTTGATTCCCTCCTACCA+GGG | 0.497345 | 4_3:-45592051 | Msa0643110:CDS |
| TTTCAAACATTGTCAAATGT+GGG | 0.497864 | 4_3:+45590540 | None:intergenic |
| TTCATGGAAAGAAATTAGCT+TGG | 0.498501 | 4_3:+45590604 | None:intergenic |
| ACTTAGATTTGCACTGGTAA+GGG | 0.501601 | 4_3:+45591679 | None:intergenic |
| CTGTGACAGGCCCTGGTAGG+AGG | 0.503303 | 4_3:+45592041 | None:intergenic |
| CTCCTATACTATCGAATCCT+GGG | 0.503774 | 4_3:+45591762 | None:intergenic |
| GGAACATGTTGGCAGCTCAT+TGG | 0.505165 | 4_3:-45592194 | Msa0643110:intron |
| AGCCTAATGAAATTGCAATC+TGG | 0.509551 | 4_3:+45591731 | None:intergenic |
| AGTACAACTGTGACAGGCCC+TGG | 0.510739 | 4_3:+45592034 | None:intergenic |
| TCAAAATCAAAGAATTAGAA+GGG | 0.521416 | 4_3:-45594333 | Msa0643110:five_prime_UTR |
| TTGTCCACTTAGATTTGCAC+TGG | 0.523144 | 4_3:+45591673 | None:intergenic |
| GTTGATAAAATACATTTGGT+TGG | 0.525721 | 4_3:-45590369 | Msa0643110:three_prime_UTR |
| AAAAGCATGTTTCTCCAAGA+TGG | 0.528414 | 4_3:+45590755 | None:intergenic |
| CAAAGCAGTTCCTGAACCAC+GGG | 0.536721 | 4_3:+45591703 | None:intergenic |
| TGAAGCTTTGAAAGCTGGAA+AGG | 0.541911 | 4_3:-45594204 | Msa0643110:CDS |
| GAAACAGACACATGTGGTCT+GGG | 0.558051 | 4_3:-45590521 | Msa0643110:three_prime_UTR |
| TGTGACAGGCCCTGGTAGGA+GGG | 0.560085 | 4_3:+45592042 | None:intergenic |
| CGTCTTAGTACAACTGTGAC+AGG | 0.567499 | 4_3:+45592028 | None:intergenic |
| TTCATTAGGCTCATTGCCCG+TGG | 0.568961 | 4_3:-45591719 | Msa0643110:CDS |
| TCGTGCAGGTTCCACTGTTG+TGG | 0.581261 | 4_3:-45591567 | Msa0643110:CDS |
| CTTACCAGTGCAAATCTAAG+TGG | 0.582494 | 4_3:-45591677 | Msa0643110:CDS |
| GTGGAACCTGCACGACCAGA+TGG | 0.582499 | 4_3:+45591575 | None:intergenic |
| AGCCCGCTAGCTATTTGTGT+TGG | 0.584508 | 4_3:-45592127 | Msa0643110:CDS |
| CCAAAGCAGTTCCTGAACCA+CGG | 0.585390 | 4_3:+45591702 | None:intergenic |
| CACCAACACAAATAGCTAGC+GGG | 0.589617 | 4_3:+45592125 | None:intergenic |
| AACAGATGCTTATGCTGCAG+AGG | 0.593983 | 4_3:-45594231 | Msa0643110:CDS |
| AAGTGTATAAGTTATACCAT+AGG | 0.599478 | 4_3:-45590583 | Msa0643110:three_prime_UTR |
| AACCCAGGATTCGATAGTAT+AGG | 0.603821 | 4_3:-45591764 | Msa0643110:CDS |
| GTTATACCATAGGATCTTTG+GGG | 0.611090 | 4_3:-45590573 | Msa0643110:three_prime_UTR |
| CAACTGTGACAGGCCCTGGT+AGG | 0.618955 | 4_3:+45592038 | None:intergenic |
| TCTTGATGTTAAAACTGGTG+TGG | 0.621075 | 4_3:-45594264 | Msa0643110:CDS |
| GAGTATGGAAAGATGTGACT+TGG | 0.622957 | 4_3:-45594288 | Msa0643110:CDS |
| ACAAGATACTTAGACCTGGA+AGG | 0.624805 | 4_3:-45591523 | Msa0643110:intron |
| CAAAATCAAAGAATTAGAAG+GGG | 0.629092 | 4_3:-45594332 | Msa0643110:five_prime_UTR |
| AATCCATATAGTGTATCAGT+GGG | 0.633215 | 4_3:+45594170 | None:intergenic |
| AAATCCATATAGTGTATCAG+TGG | 0.635491 | 4_3:+45594169 | None:intergenic |
| ATGAGGTAAATGATCAGTGA+GGG | 0.640177 | 4_3:+45592078 | None:intergenic |
| CTTGAACAATCTCTGAACCC+AGG | 0.645214 | 4_3:-45591779 | Msa0643110:CDS |
| GTCAACACTTCATTCTTACG+AGG | 0.658248 | 4_3:-45594661 | Msa0643110:five_prime_UTR |
| GCTTTCAATTTACAGCGCGA+AGG | 0.658974 | 4_3:-45590790 | Msa0643110:intron |
| TTATACCATAGGATCTTTGG+GGG | 0.660748 | 4_3:-45590572 | Msa0643110:three_prime_UTR |
| GTCACAGTTGTACTAAGACG+AGG | 0.662965 | 4_3:-45592025 | Msa0643110:intron |
| TAATGTTTAGTAAAAGCACA+AGG | 0.664127 | 4_3:-45594743 | None:intergenic |
| AAATACAAGATACTTAGACC+TGG | 0.674059 | 4_3:-45591527 | Msa0643110:CDS |
| AAATGATAGAACTTGTGCTA+CGG | 0.683093 | 4_3:-45590391 | Msa0643110:three_prime_UTR |
| AGGGAATCAAGCAGACCATG+AGG | 0.692991 | 4_3:+45592061 | None:intergenic |
| TCACCAACACAAATAGCTAG+CGG | 0.694815 | 4_3:+45592124 | None:intergenic |
| AGTATGGAAAGATGTGACTT+GGG | 0.698493 | 4_3:-45594287 | Msa0643110:CDS |
| ATGTTTGAAACAGACACATG+TGG | 0.702632 | 4_3:-45590527 | Msa0643110:three_prime_UTR |
| TATCGTCCATACAACAAGGA+CGG | 0.707070 | 4_3:-45594690 | Msa0643110:five_prime_UTR |
| CATGAGGTAAATGATCAGTG+AGG | 0.709246 | 4_3:+45592077 | None:intergenic |
| AACGTATCGTCCATACAACA+AGG | 0.713935 | 4_3:-45594694 | Msa0643110:five_prime_UTR |
| TATACCATAGGATCTTTGGG+GGG | 0.720579 | 4_3:-45590571 | Msa0643110:three_prime_UTR |
| TGTACTGAGATCCACAACAG+TGG | 0.735830 | 4_3:+45591556 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATAAAATGCATATATAAT+AGG | + | chr4_3:45591028-45591047 | None:intergenic | 10.0% |
| !!! | TTATTATATATGGTTATTTT+AGG | + | chr4_3:45591099-45591118 | None:intergenic | 10.0% |
| !! | GTTCATTTAGTTATTATATA+TGG | + | chr4_3:45591109-45591128 | None:intergenic | 15.0% |
| !! | ATTAAAATCAATTAACTGTT+CGG | + | chr4_3:45591774-45591793 | None:intergenic | 15.0% |
| !!! | AGTTAATTGATTTTAATTGA+TGG | - | chr4_3:45591777-45591796 | Msa0643110:CDS | 15.0% |
| !!! | TTCTTTATCAGATTTTTTTT+AGG | - | chr4_3:45591974-45591993 | Msa0643110:intron | 15.0% |
| !!! | TCTTTATCAGATTTTTTTTA+GGG | - | chr4_3:45591975-45591994 | Msa0643110:intron | 15.0% |
| !!! | ATTGTTAATGTTTGAAATAA+TGG | - | chr4_3:45592495-45592514 | Msa0643110:intron | 15.0% |
| !!! | AAATTATTTTGTAAATCACT+TGG | + | chr4_3:45592708-45592727 | None:intergenic | 15.0% |
| !! | AATCTTCATATATCTAATAT+AGG | - | chr4_3:45593658-45593677 | Msa0643110:intron | 15.0% |
| !! | AAAATTATTTCAAACTTCAA+AGG | + | chr4_3:45593823-45593842 | None:intergenic | 15.0% |
| !! | AAGTTAGAATATGAGAAATT+TGG | + | chr4_3:45590525-45590544 | None:intergenic | 20.0% |
| !! | ATCAAAATCAAAGAATTAGA+AGG | - | chr4_3:45590732-45590751 | Msa0643110:CDS | 20.0% |
| !! | TCAAAATCAAAGAATTAGAA+GGG | - | chr4_3:45590733-45590752 | Msa0643110:CDS | 20.0% |
| !! | AAACAATTTCAATGCTATAT+AGG | + | chr4_3:45590985-45591004 | None:intergenic | 20.0% |
| !! | GAAATGATAAAATTAAACAC+TGG | - | chr4_3:45591179-45591198 | Msa0643110:intron | 20.0% |
| !!! | TTTTCAATAGAATGCAAAAT+GGG | + | chr4_3:45591269-45591288 | None:intergenic | 20.0% |
| !!! | TTGTTGGTTTTTGAAATAAT+TGG | - | chr4_3:45591653-45591672 | Msa0643110:CDS | 20.0% |
| !!! | TGTTGGTTTTTGAAATAATT+GGG | - | chr4_3:45591654-45591673 | Msa0643110:CDS | 20.0% |
| !!! | TTTTTTTTTACAAACAACGA+TGG | + | chr4_3:45592077-45592096 | None:intergenic | 20.0% |
| !!! | ATCATATTCTAAAAAATCAC+TGG | + | chr4_3:45592170-45592189 | None:intergenic | 20.0% |
| !! | GATTGTTTATTAAACCATTT+AGG | - | chr4_3:45592643-45592662 | Msa0643110:intron | 20.0% |
| !!! | AAATGAGATTTTAAAAGTAC+TGG | + | chr4_3:45592773-45592792 | None:intergenic | 20.0% |
| !! | TCATAATAGGTCTAAATATA+TGG | + | chr4_3:45592810-45592829 | None:intergenic | 20.0% |
| !!! | TGTAATGGAAAATGAATTTA+GGG | - | chr4_3:45593096-45593115 | Msa0643110:intron | 20.0% |
| !!! | TCAAAGATTTTGAAAAACTA+TGG | - | chr4_3:45593432-45593451 | Msa0643110:intron | 20.0% |
| !!! | CAAAGATTTTGAAAAACTAT+GGG | - | chr4_3:45593433-45593452 | Msa0643110:intron | 20.0% |
| !! | TTCATATATCTAATATAGGA+TGG | - | chr4_3:45593662-45593681 | Msa0643110:intron | 20.0% |
| !! | CATAAAATAACTAACAAAAG+AGG | + | chr4_3:45593937-45593956 | None:intergenic | 20.0% |
| !!! | CTCTTTTGTTAGTTATTTTA+TGG | - | chr4_3:45593935-45593954 | Msa0643110:intron | 20.0% |
| !! | TATTCTGTAATAGTGAAATT+AGG | - | chr4_3:45594594-45594613 | Msa0643110:intron | 20.0% |
| ! | AAATGTTGAAAAGAAAGAGA+AGG | + | chr4_3:45590470-45590489 | None:intergenic | 25.0% |
| !! | TCAACATTTTATCAAACACT+TGG | - | chr4_3:45590481-45590500 | Msa0643110:three_prime_UTR | 25.0% |
| !! | TATGAGAAATTTGGTGAATT+TGG | + | chr4_3:45590516-45590535 | None:intergenic | 25.0% |
| ! | TTGAAGCATGAAATTAAAGT+GGG | + | chr4_3:45590560-45590579 | None:intergenic | 25.0% |
| !! | TTTGAAGCATGAAATTAAAG+TGG | + | chr4_3:45590561-45590580 | None:intergenic | 25.0% |
| ! | CAAAATCAAAGAATTAGAAG+GGG | - | chr4_3:45590734-45590753 | Msa0643110:CDS | 25.0% |
| !! | CTTTTCAATAGAATGCAAAA+TGG | + | chr4_3:45591270-45591289 | None:intergenic | 25.0% |
| ! | CAGTTGAAAGGAAAATAAAT+TGG | - | chr4_3:45591361-45591380 | Msa0643110:intron | 25.0% |
| ! | GAAAGGAAAATAAATTGGTA+TGG | - | chr4_3:45591366-45591385 | Msa0643110:intron | 25.0% |
| ! | ATGCAAAGTTACATTATTGT+TGG | - | chr4_3:45591637-45591656 | Msa0643110:CDS | 25.0% |
| !! | GCTGTTAAAAGATGATTTTA+TGG | - | chr4_3:45592361-45592380 | Msa0643110:intron | 25.0% |
| ! | ATTAAGAGACAGTTATATAC+CGG | - | chr4_3:45592519-45592538 | Msa0643110:intron | 25.0% |
| ! | GATAAGTCTTGAAAAATGTA+GGG | + | chr4_3:45592615-45592634 | None:intergenic | 25.0% |
| ! | AGATAAGTCTTGAAAAATGT+AGG | + | chr4_3:45592616-45592635 | None:intergenic | 25.0% |
| !!! | ATTAAACCATTTAGGTTGTT+AGG | - | chr4_3:45592651-45592670 | Msa0643110:intron | 25.0% |
| ! | GAAAGCAATTGAATCATAAT+AGG | + | chr4_3:45592823-45592842 | None:intergenic | 25.0% |
| !! | GTGTAATGGAAAATGAATTT+AGG | - | chr4_3:45593095-45593114 | Msa0643110:intron | 25.0% |
| ! | GATCTTTACAATGAAATCAA+AGG | + | chr4_3:45593217-45593236 | None:intergenic | 25.0% |
| ! | CATACAATCATATATTACAC+GGG | + | chr4_3:45593239-45593258 | None:intergenic | 25.0% |
| ! | GCATACAATCATATATTACA+CGG | + | chr4_3:45593240-45593259 | None:intergenic | 25.0% |
| ! | CTAAGTATCTTGTATTTGTA+TGG | + | chr4_3:45593536-45593555 | None:intergenic | 25.0% |
| ! | ATATATCTAATATAGGATGG+TGG | - | chr4_3:45593665-45593684 | Msa0643110:intron | 25.0% |
| !! | TATCTAAAACTGAATGATAC+TGG | - | chr4_3:45593727-45593746 | Msa0643110:intron | 25.0% |
| !! | TATAAAGCAAACAACCATTT+TGG | - | chr4_3:45593842-45593861 | Msa0643110:intron | 25.0% |
| ! | TTGCAATTTCAATACGTTTA+GGG | + | chr4_3:45593900-45593919 | None:intergenic | 25.0% |
| ! | TTTGCAATTTCAATACGTTT+AGG | + | chr4_3:45593901-45593920 | None:intergenic | 25.0% |
| !! | ATCTCTTCTATTAGTCATTT+TGG | + | chr4_3:45594021-45594040 | None:intergenic | 25.0% |
| ! | ATAAAAGTAAGCAATCACTT+TGG | + | chr4_3:45594112-45594131 | None:intergenic | 25.0% |
| !!! | AAAGTGATTGCTTACTTTTA+TGG | - | chr4_3:45594111-45594130 | Msa0643110:intron | 25.0% |
| !!! | AAGTGATTGCTTACTTTTAT+GGG | - | chr4_3:45594112-45594131 | Msa0643110:intron | 25.0% |
| ! | AACCTAAATTATCTATCGTA+CGG | + | chr4_3:45594155-45594174 | None:intergenic | 25.0% |
| !! | GATAATTTAGGTTACTTGTT+TGG | - | chr4_3:45594162-45594181 | Msa0643110:CDS | 25.0% |
| !! | CAAAAATCAATTCTTTTGCT+TGG | - | chr4_3:45594421-45594440 | Msa0643110:intron | 25.0% |
| ! | AAGTGTATAAGTTATACCAT+AGG | - | chr4_3:45594483-45594502 | Msa0643110:intron | 25.0% |
| ! | TTTCAAACATTGTCAAATGT+GGG | + | chr4_3:45594529-45594548 | None:intergenic | 25.0% |
| ! | TTATCACTTAGTAACATGTT+AGG | + | chr4_3:45594630-45594649 | None:intergenic | 25.0% |
| !!! | TACGGTTGATAAAATACATT+TGG | - | chr4_3:45594693-45594712 | Msa0643110:five_prime_UTR | 25.0% |
| !! | GTTGATAAAATACATTTGGT+TGG | - | chr4_3:45594697-45594716 | Msa0643110:five_prime_UTR | 25.0% |
| !! | AAAAGCACATTATGAATTAG+TGG | - | chr4_3:45594721-45594740 | Msa0643110:five_prime_UTR | 25.0% |
| ! | ACATTTTATCAAACACTTGG+TGG | - | chr4_3:45590484-45590503 | Msa0643110:three_prime_UTR | 30.0% |
| ! | CATTTTATCAAACACTTGGT+GGG | - | chr4_3:45590485-45590504 | Msa0643110:three_prime_UTR | 30.0% |
| CTTCAAAATCATTCCTTTCA+TGG | - | chr4_3:45590574-45590593 | Msa0643110:three_prime_UTR | 30.0% | |
| !!! | CTTTCATGGAATTTTGAGAT+GGG | - | chr4_3:45590588-45590607 | Msa0643110:three_prime_UTR | 30.0% |
| !!! | TTGTTGTCTTTTGTTGTTGA+TGG | - | chr4_3:45590639-45590658 | Msa0643110:three_prime_UTR | 30.0% |
| AATCCATATAGTGTATCAGT+GGG | + | chr4_3:45590899-45590918 | None:intergenic | 30.0% | |
| AAATCCATATAGTGTATCAG+TGG | + | chr4_3:45590900-45590919 | None:intergenic | 30.0% | |
| GGTTTGAGAATGAATTAAAC+AGG | - | chr4_3:45591200-45591219 | Msa0643110:intron | 30.0% | |
| AATGAATTAAACAGGTGAAG+TGG | - | chr4_3:45591208-45591227 | Msa0643110:intron | 30.0% | |
| !! | TGCAAAATGGGTTATTAACT+AGG | + | chr4_3:45591257-45591276 | None:intergenic | 30.0% |
| TTAATGTGGTCAAGCATTAT+AGG | + | chr4_3:45591327-45591346 | None:intergenic | 30.0% | |
| !!! | TTGCGAGAATAGTTTTGATA+TGG | - | chr4_3:45591389-45591408 | Msa0643110:intron | 30.0% |
| AACAACATTGATATGCCTAT+AGG | + | chr4_3:45591691-45591710 | None:intergenic | 30.0% | |
| GCATATCAATGTTGTTATAC+AGG | - | chr4_3:45591695-45591714 | Msa0643110:CDS | 30.0% | |
| GTTGTTATACAGGTTTAAAC+CGG | - | chr4_3:45591705-45591724 | Msa0643110:CDS | 30.0% | |
| AGAGAATATGACATTCTTTG+TGG | - | chr4_3:45592198-45592217 | Msa0643110:intron | 30.0% | |
| GAGAATATGACATTCTTTGT+GGG | - | chr4_3:45592199-45592218 | Msa0643110:intron | 30.0% | |
| TTGTTAACAAAATCAGCAGA+TGG | + | chr4_3:45592302-45592321 | None:intergenic | 30.0% | |
| ! | CTAATGTTTTTCCTTGATTG+AGG | - | chr4_3:45592406-45592425 | Msa0643110:intron | 30.0% |
| TGTATGGATATAAAGGTCAA+TGG | - | chr4_3:45592568-45592587 | Msa0643110:intron | 30.0% | |
| ATTCATCCTAACAACCTAAA+TGG | + | chr4_3:45592660-45592679 | None:intergenic | 30.0% | |
| ! | TAATAATTGCTTGTTACCTG+TGG | - | chr4_3:45592851-45592870 | Msa0643110:intron | 30.0% |
| TACAAAGGGATTGAAGAAAT+AGG | + | chr4_3:45593176-45593195 | None:intergenic | 30.0% | |
| ATTGTATGCTTGAATGTTAC+AGG | - | chr4_3:45593251-45593270 | Msa0643110:intron | 30.0% | |
| AAATACAAGATACTTAGACC+TGG | - | chr4_3:45593539-45593558 | Msa0643110:intron | 30.0% | |
| TTGCTGCATTGTTTAAAGAT+TGG | - | chr4_3:45593586-45593605 | Msa0643110:intron | 30.0% | |
| GATGTTCTAATATTTCACCA+TGG | - | chr4_3:45593703-45593722 | Msa0643110:intron | 30.0% | |
| !!! | CATTCAGTTTTAGATATCCA+TGG | + | chr4_3:45593723-45593742 | None:intergenic | 30.0% |
| ! | ATATGCATTTTGCACATACA+AGG | + | chr4_3:45593774-45593793 | None:intergenic | 30.0% |
| TGCAAAATGCATATGAAACA+CGG | - | chr4_3:45593780-45593799 | Msa0643110:intron | 30.0% | |
| AACTAACAAAAGAGGAACTA+GGG | + | chr4_3:45593929-45593948 | None:intergenic | 30.0% | |
| TAACTAACAAAAGAGGAACT+AGG | + | chr4_3:45593930-45593949 | None:intergenic | 30.0% | |
| ! | TGTTTGGAAGAAACAGTTTT+TGG | - | chr4_3:45594178-45594197 | Msa0643110:CDS | 30.0% |
| TTCATGGAAAGAAATTAGCT+TGG | + | chr4_3:45594465-45594484 | None:intergenic | 30.0% | |
| GGTATAACTTATACACTTCA+TGG | + | chr4_3:45594481-45594500 | None:intergenic | 30.0% | |
| AAGTTATACCATAGGATCTT+TGG | - | chr4_3:45594491-45594510 | Msa0643110:intron | 30.0% | |
| AGTTATACCATAGGATCTTT+GGG | - | chr4_3:45594492-45594511 | Msa0643110:intron | 30.0% | |
| GTTTCAAACATTGTCAAATG+TGG | + | chr4_3:45594530-45594549 | None:intergenic | 30.0% | |
| AAATGATAGAACTTGTGCTA+CGG | - | chr4_3:45594675-45594694 | Msa0643110:five_prime_UTR | 30.0% | |
| CCATCTCAAAATTCCATGAA+AGG | + | chr4_3:45590590-45590609 | None:intergenic | 35.0% | |
| !! | CCTTTCATGGAATTTTGAGA+TGG | - | chr4_3:45590587-45590606 | Msa0643110:three_prime_UTR | 35.0% |
| GATGGAATTTACTGAACCAA+TGG | - | chr4_3:45590657-45590676 | Msa0643110:three_prime_UTR | 35.0% | |
| AACCAATGGCATAGTATTTC+AGG | - | chr4_3:45590671-45590690 | Msa0643110:three_prime_UTR | 35.0% | |
| ! | TATTTCAGGTGTGTGTAGAT+TGG | - | chr4_3:45590685-45590704 | Msa0643110:three_prime_UTR | 35.0% |
| AGTATGGAAAGATGTGACTT+GGG | - | chr4_3:45590779-45590798 | Msa0643110:intron | 35.0% | |
| TTGGGTCTTGATGTTAAAAC+TGG | - | chr4_3:45590797-45590816 | Msa0643110:intron | 35.0% | |
| TCTTGATGTTAAAACTGGTG+TGG | - | chr4_3:45590802-45590821 | Msa0643110:intron | 35.0% | |
| !!! | GGTTATTTTAGGAGCTTGAT+AGG | + | chr4_3:45591088-45591107 | None:intergenic | 35.0% |
| ! | CAGTTGCAGATTTTAAGCTA+AGG | + | chr4_3:45591131-45591150 | None:intergenic | 35.0% |
| TTTCAACTGCATGCGAAAAT+GGG | + | chr4_3:45591350-45591369 | None:intergenic | 35.0% | |
| TGTCAAAATGCTTGGTTGTT+TGG | - | chr4_3:45591486-45591505 | Msa0643110:intron | 35.0% | |
| GTCAAAATGCTTGGTTGTTT+GGG | - | chr4_3:45591487-45591506 | Msa0643110:intron | 35.0% | |
| ACAGCAGTAATGTGTGATAT+AGG | - | chr4_3:45591600-45591619 | Msa0643110:CDS | 35.0% | |
| CAGCAGTAATGTGTGATATA+GGG | - | chr4_3:45591601-45591620 | Msa0643110:CDS | 35.0% | |
| AAGACATATGCATACACATC+TGG | + | chr4_3:45591925-45591944 | None:intergenic | 35.0% | |
| ATATAGACACAGAGGATTCA+TGG | + | chr4_3:45592050-45592069 | None:intergenic | 35.0% | |
| ATGGATACATATAGACACAG+AGG | + | chr4_3:45592058-45592077 | None:intergenic | 35.0% | |
| TGTACACTGATGCTATTGAA+AGG | + | chr4_3:45592326-45592345 | None:intergenic | 35.0% | |
| GATTCACTTAACCTCAATCA+AGG | + | chr4_3:45592420-45592439 | None:intergenic | 35.0% | |
| TTAAAATGTGCGGCTAAGTT+TGG | + | chr4_3:45592442-45592461 | None:intergenic | 35.0% | |
| GCAAAGTTGCTTAAAATGTG+CGG | + | chr4_3:45592452-45592471 | None:intergenic | 35.0% | |
| AGCAACTTTGCTCAATAAAC+AGG | - | chr4_3:45592461-45592480 | Msa0643110:intron | 35.0% | |
| GCAACTTTGCTCAATAAACA+GGG | - | chr4_3:45592462-45592481 | Msa0643110:intron | 35.0% | |
| CAACTTTGCTCAATAAACAG+GGG | - | chr4_3:45592463-45592482 | Msa0643110:intron | 35.0% | |
| AACTTTGCTCAATAAACAGG+GGG | - | chr4_3:45592464-45592483 | Msa0643110:intron | 35.0% | |
| GGATAAAACAAGCAAAGTTC+CGG | + | chr4_3:45592541-45592560 | None:intergenic | 35.0% | |
| !!! | ACTTTGCTTGTTTTATCCTC+TGG | - | chr4_3:45592543-45592562 | Msa0643110:intron | 35.0% |
| !!! | CTTTGCTTGTTTTATCCTCT+GGG | - | chr4_3:45592544-45592563 | Msa0643110:intron | 35.0% |
| TTTATATCCATACATCCCAG+AGG | + | chr4_3:45592562-45592581 | None:intergenic | 35.0% | |
| ! | TCTGGGATGTATGGATATAA+AGG | - | chr4_3:45592561-45592580 | Msa0643110:intron | 35.0% |
| ATGGATATAAAGGTCAATGG+AGG | - | chr4_3:45592571-45592590 | Msa0643110:intron | 35.0% | |
| ATGAGGTAAATGATCAGTGA+GGG | + | chr4_3:45592991-45593010 | None:intergenic | 35.0% | |
| TCACACACAAAAACAACAGA+TGG | + | chr4_3:45593075-45593094 | None:intergenic | 35.0% | |
| ! | GTTTTTGTGTGTGAGTGTAA+TGG | - | chr4_3:45593081-45593100 | Msa0643110:intron | 35.0% |
| CAGAAGAAATGCTGTACAAA+GGG | + | chr4_3:45593190-45593209 | None:intergenic | 35.0% | |
| ACAGAAGAAATGCTGTACAA+AGG | + | chr4_3:45593191-45593210 | None:intergenic | 35.0% | |
| TGCCAGATTGCAATTTCATT+AGG | - | chr4_3:45593333-45593352 | Msa0643110:intron | 35.0% | |
| AGCCTAATGAAATTGCAATC+TGG | + | chr4_3:45593338-45593357 | None:intergenic | 35.0% | |
| ! | ACTTAGATTTGCACTGGTAA+GGG | + | chr4_3:45593390-45593409 | None:intergenic | 35.0% |
| TCTTTGATGCAAACACTACT+TGG | + | chr4_3:45593419-45593438 | None:intergenic | 35.0% | |
| CAGCAAAAATAAGTGTAGAG+AGG | + | chr4_3:45593572-45593591 | None:intergenic | 35.0% | |
| ! | ATCTAATATAGGATGGTGGT+AGG | - | chr4_3:45593669-45593688 | Msa0643110:intron | 35.0% |
| ACATACAAGGTAACCTAAGT+GGG | + | chr4_3:45593761-45593780 | None:intergenic | 35.0% | |
| CAAACATTCAAGGACCAAAA+TGG | + | chr4_3:45593859-45593878 | None:intergenic | 35.0% | |
| ! | TTTTGGTCCTTGAATGTTTG+AGG | - | chr4_3:45593859-45593878 | Msa0643110:intron | 35.0% |
| ACCAACGAAAAACACATTCA+AGG | - | chr4_3:45593962-45593981 | Msa0643110:intron | 35.0% | |
| ! | TCCTTGAATGTGTTTTTCGT+TGG | + | chr4_3:45593966-45593985 | None:intergenic | 35.0% |
| ACTAATAGAAGAGATACGTG+TGG | - | chr4_3:45594026-45594045 | Msa0643110:intron | 35.0% | |
| TTGCAATTTCGATGCATTCA+AGG | - | chr4_3:45594055-45594074 | Msa0643110:intron | 35.0% | |
| AGCCGTACGATAGATAATTT+AGG | - | chr4_3:45594150-45594169 | Msa0643110:intron | 35.0% | |
| CTGTAAATTGAAAGCGAACA+AGG | + | chr4_3:45594271-45594290 | None:intergenic | 35.0% | |
| ! | AAAAGCATGTTTCTCCAAGA+TGG | + | chr4_3:45594314-45594333 | None:intergenic | 35.0% |
| GTTATACCATAGGATCTTTG+GGG | - | chr4_3:45594493-45594512 | Msa0643110:intron | 35.0% | |
| TTATACCATAGGATCTTTGG+GGG | - | chr4_3:45594494-45594513 | Msa0643110:intron | 35.0% | |
| ! | ATGTTTGAAACAGACACATG+TGG | - | chr4_3:45594539-45594558 | Msa0643110:intron | 35.0% |
| AACGTATCGTCCATACAACA+AGG | - | chr4_3:45590372-45590391 | Msa0643110:three_prime_UTR | 40.0% | |
| TATCGTCCATACAACAAGGA+CGG | - | chr4_3:45590376-45590395 | Msa0643110:three_prime_UTR | 40.0% | |
| ! | TAGAAACCGTCCTTGTTGTA+TGG | + | chr4_3:45590385-45590404 | None:intergenic | 40.0% |
| GTCAACACTTCATTCTTACG+AGG | - | chr4_3:45590405-45590424 | Msa0643110:three_prime_UTR | 40.0% | |
| CACCTGAAATACTATGCCAT+TGG | + | chr4_3:45590676-45590695 | None:intergenic | 40.0% | |
| AAGGGGTTTCTCCAAAAACA+TGG | - | chr4_3:45590751-45590770 | Msa0643110:CDS | 40.0% | |
| GTTTCTCCAAAAACATGGCT+TGG | - | chr4_3:45590756-45590775 | Msa0643110:CDS | 40.0% | |
| ! | CATACTCCAAGCCATGTTTT+TGG | + | chr4_3:45590765-45590784 | None:intergenic | 40.0% |
| ! | CAAAAACATGGCTTGGAGTA+TGG | - | chr4_3:45590763-45590782 | Msa0643110:CDS | 40.0% |
| GAGTATGGAAAGATGTGACT+TGG | - | chr4_3:45590778-45590797 | Msa0643110:CDS | 40.0% | |
| !! | TGAAGCTTTGAAAGCTGGAA+AGG | - | chr4_3:45590862-45590881 | Msa0643110:intron | 40.0% |
| GTTCCCACTGATACACTATA+TGG | - | chr4_3:45590893-45590912 | Msa0643110:intron | 40.0% | |
| ! | ATGGATTTGCTTGTGATGCT+TGG | - | chr4_3:45590912-45590931 | Msa0643110:intron | 40.0% |
| GGTCAAGCATTATAGGCATT+TGG | + | chr4_3:45591320-45591339 | None:intergenic | 40.0% | |
| !! | CATGCGAAAATGGGTTAATG+TGG | + | chr4_3:45591341-45591360 | None:intergenic | 40.0% |
| CTTTCAACTGCATGCGAAAA+TGG | + | chr4_3:45591351-45591370 | None:intergenic | 40.0% | |
| ! | CATTTTCGCATGCAGTTGAA+AGG | - | chr4_3:45591349-45591368 | Msa0643110:intron | 40.0% |
| GCTGAACTGAATCATAGCAT+CGG | - | chr4_3:45591433-45591452 | Msa0643110:intron | 40.0% | |
| CACTGCATTGTCAAAATGCT+TGG | - | chr4_3:45591478-45591497 | Msa0643110:intron | 40.0% | |
| AAAATGCTTGGTTGTTTGGG+TGG | - | chr4_3:45591490-45591509 | Msa0643110:intron | 40.0% | |
| AAATGCTTGGTTGTTTGGGT+GGG | - | chr4_3:45591491-45591510 | Msa0643110:intron | 40.0% | |
| CAGTAGCGTGGAAACTTAAA+TGG | - | chr4_3:45591516-45591535 | Msa0643110:intron | 40.0% | |
| TGGGTTCAACTTTAGCCTAT+AGG | - | chr4_3:45591673-45591692 | Msa0643110:CDS | 40.0% | |
| TATACAGGTTTAAACCGGTG+TGG | - | chr4_3:45591710-45591729 | Msa0643110:CDS | 40.0% | |
| AGACTATAAAGCAACCACAC+CGG | + | chr4_3:45591727-45591746 | None:intergenic | 40.0% | |
| ! | GTGGTTGCTTTATAGTCTGT+TGG | - | chr4_3:45591729-45591748 | Msa0643110:CDS | 40.0% |
| TTCACAGTTCGACTGCATTT+CGG | - | chr4_3:45591858-45591877 | Msa0643110:intron | 40.0% | |
| !!! | GTTTTATCCTCTGGGATGTA+TGG | - | chr4_3:45592552-45592571 | Msa0643110:intron | 40.0% |
| !! | TCACTTGGTTGATAGTTTGC+TGG | + | chr4_3:45592693-45592712 | None:intergenic | 40.0% |
| TTGTTACCTGTGGAACATGT+TGG | - | chr4_3:45592861-45592880 | Msa0643110:intron | 40.0% | |
| GCTCATTGGAAGCAATTAAC+AGG | - | chr4_3:45592886-45592905 | Msa0643110:intron | 40.0% | |
| TCACCAACACAAATAGCTAG+CGG | + | chr4_3:45592945-45592964 | None:intergenic | 40.0% | |
| CATGAGGTAAATGATCAGTG+AGG | + | chr4_3:45592992-45593011 | None:intergenic | 40.0% | |
| CTCACTGATCATTTACCTCA+TGG | - | chr4_3:45592990-45593009 | Msa0643110:intron | 40.0% | |
| AACCCAGGATTCGATAGTAT+AGG | - | chr4_3:45593302-45593321 | Msa0643110:intron | 40.0% | |
| CTCCTATACTATCGAATCCT+GGG | + | chr4_3:45593307-45593326 | None:intergenic | 40.0% | |
| ACTCCTATACTATCGAATCC+TGG | + | chr4_3:45593308-45593327 | None:intergenic | 40.0% | |
| ! | CACTTAGATTTGCACTGGTA+AGG | + | chr4_3:45593391-45593410 | None:intergenic | 40.0% |
| CTTACCAGTGCAAATCTAAG+TGG | - | chr4_3:45593389-45593408 | Msa0643110:intron | 40.0% | |
| TTGTCCACTTAGATTTGCAC+TGG | + | chr4_3:45593396-45593415 | None:intergenic | 40.0% | |
| CACTGTGCTTCTGTTTATGA+TGG | - | chr4_3:45593458-45593477 | Msa0643110:intron | 40.0% | |
| TGTGCTTCTGTTTATGATGG+TGG | - | chr4_3:45593461-45593480 | Msa0643110:intron | 40.0% | |
| ACAAGATACTTAGACCTGGA+AGG | - | chr4_3:45593543-45593562 | Msa0643110:intron | 40.0% | |
| CACATACAAGGTAACCTAAG+TGG | + | chr4_3:45593762-45593781 | None:intergenic | 40.0% | |
| TGACAACGCTTCATACATTC+AGG | - | chr4_3:45594085-45594104 | Msa0643110:intron | 40.0% | |
| GACAACGCTTCATACATTCA+GGG | - | chr4_3:45594086-45594105 | Msa0643110:intron | 40.0% | |
| ! | GGAGAAACATGCTTTTGTTG+AGG | - | chr4_3:45594318-45594337 | Msa0643110:exon | 40.0% |
| AGCGAAAAATACCTAGAACG+TGG | + | chr4_3:45594399-45594418 | None:intergenic | 40.0% | |
| ! | TTCTTTTGCTTGGACATGAG+AGG | - | chr4_3:45594431-45594450 | Msa0643110:intron | 40.0% |
| TATACCATAGGATCTTTGGG+GGG | - | chr4_3:45594495-45594514 | Msa0643110:intron | 40.0% | |
| GGAGAAAAAGAGACTGACAG+TGG | + | chr4_3:45590449-45590468 | None:intergenic | 45.0% | |
| AACAGATGCTTATGCTGCAG+AGG | - | chr4_3:45590835-45590854 | Msa0643110:intron | 45.0% | |
| !! | GCAGTTGAAGCTTTGAAAGC+TGG | - | chr4_3:45590857-45590876 | Msa0643110:intron | 45.0% |
| GTTGCGAGAACTAAGCAAGT+AGG | - | chr4_3:45591411-45591430 | Msa0643110:intron | 45.0% | |
| TCACAGTTCGACTGCATTTC+GGG | - | chr4_3:45591859-45591878 | Msa0643110:intron | 45.0% | |
| TTTGCTCAATAAACAGGGGG+TGG | - | chr4_3:45592467-45592486 | Msa0643110:intron | 45.0% | |
| CACCAACACAAATAGCTAGC+GGG | + | chr4_3:45592944-45592963 | None:intergenic | 45.0% | |
| CGTCTTAGTACAACTGTGAC+AGG | + | chr4_3:45593041-45593060 | None:intergenic | 45.0% | |
| GTCACAGTTGTACTAAGACG+AGG | - | chr4_3:45593041-45593060 | Msa0643110:intron | 45.0% | |
| CTTGAACAATCTCTGAACCC+AGG | - | chr4_3:45593287-45593306 | Msa0643110:intron | 45.0% | |
| TGTACTGAGATCCACAACAG+TGG | + | chr4_3:45593513-45593532 | None:intergenic | 45.0% | |
| ACTGGATTCATCTCCCACTT+AGG | - | chr4_3:45593745-45593764 | Msa0643110:intron | 45.0% | |
| GACAACGCCTCAAACATTCA+AGG | + | chr4_3:45593869-45593888 | None:intergenic | 45.0% | |
| !! | TGTTTGAGGCGTTGTCACTA+TGG | - | chr4_3:45593873-45593892 | Msa0643110:intron | 45.0% |
| GCTTTCAATTTACAGCGCGA+AGG | - | chr4_3:45594276-45594295 | Msa0643110:CDS | 45.0% | |
| TGAAACAGACACATGTGGTC+TGG | - | chr4_3:45594544-45594563 | Msa0643110:intron | 45.0% | |
| GAAACAGACACATGTGGTCT+GGG | - | chr4_3:45594545-45594564 | Msa0643110:intron | 45.0% | |
| GCAGCATAAGCATCTGTTGC+AGG | + | chr4_3:45590833-45590852 | None:intergenic | 50.0% | |
| CACAGTTCGACTGCATTTCG+GGG | - | chr4_3:45591860-45591879 | Msa0643110:intron | 50.0% | |
| GGAACATGTTGGCAGCTCAT+TGG | - | chr4_3:45592872-45592891 | Msa0643110:intron | 50.0% | |
| AGCCCGCTAGCTATTTGTGT+TGG | - | chr4_3:45592939-45592958 | Msa0643110:intron | 50.0% | |
| AGGGAATCAAGCAGACCATG+AGG | + | chr4_3:45593008-45593027 | None:intergenic | 50.0% | |
| TGCTTGATTCCCTCCTACCA+GGG | - | chr4_3:45593015-45593034 | Msa0643110:intron | 50.0% | |
| TTCATTAGGCTCATTGCCCG+TGG | - | chr4_3:45593347-45593366 | Msa0643110:intron | 50.0% | |
| CAAAGCAGTTCCTGAACCAC+GGG | + | chr4_3:45593366-45593385 | None:intergenic | 50.0% | |
| CCAAAGCAGTTCCTGAACCA+CGG | + | chr4_3:45593367-45593386 | None:intergenic | 50.0% | |
| !! | GATGGTGGTTTGCTTCCATC+TGG | - | chr4_3:45593476-45593495 | Msa0643110:intron | 50.0% |
| GTGTAGAGAGGTTACCTTCC+AGG | + | chr4_3:45593560-45593579 | None:intergenic | 50.0% | |
| GGAAGAGACTGTTGCCATCT+TGG | - | chr4_3:45594297-45594316 | Msa0643110:CDS | 50.0% | |
| CTAGAACGTGGCACTGCAAA+TGG | + | chr4_3:45594387-45594406 | None:intergenic | 50.0% | |
| CATTTGCAGTGCCACGTTCT+AGG | - | chr4_3:45594385-45594404 | Msa0643110:intron | 50.0% | |
| TTTGGGTGGGAACAGTAGCG+TGG | - | chr4_3:45591504-45591523 | Msa0643110:intron | 55.0% | |
| GAGCTGCCAACATGTTCCAC+AGG | + | chr4_3:45592870-45592889 | None:intergenic | 55.0% | |
| CTGCTTGATTCCCTCCTACC+AGG | - | chr4_3:45593014-45593033 | Msa0643110:intron | 55.0% | |
| AGTACAACTGTGACAGGCCC+TGG | + | chr4_3:45593035-45593054 | None:intergenic | 55.0% | |
| CCGTGGTTCAGGAACTGCTT+TGG | - | chr4_3:45593364-45593383 | Msa0643110:intron | 55.0% | |
| TTGCTTCCATCTGGTCGTGC+AGG | - | chr4_3:45593485-45593504 | Msa0643110:intron | 55.0% | |
| TCGTGCAGGTTCCACTGTTG+TGG | - | chr4_3:45593499-45593518 | Msa0643110:intron | 55.0% | |
| TGCACCCCCCAAAGATCCTA+TGG | + | chr4_3:45594502-45594521 | None:intergenic | 55.0% | |
| TGTGACAGGCCCTGGTAGGA+GGG | + | chr4_3:45593027-45593046 | None:intergenic | 60.0% | |
| CAACTGTGACAGGCCCTGGT+AGG | + | chr4_3:45593031-45593050 | None:intergenic | 60.0% | |
| AGGCTCATTGCCCGTGGTTC+AGG | - | chr4_3:45593353-45593372 | Msa0643110:intron | 60.0% | |
| GTGGAACCTGCACGACCAGA+TGG | + | chr4_3:45593494-45593513 | None:intergenic | 60.0% | |
| CTGTGACAGGCCCTGGTAGG+AGG | + | chr4_3:45593028-45593047 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 45590327 | 45594761 | 45590327 | ID=Msa0643110;Name=Msa0643110 |
| chr4_3 | mRNA | 45590327 | 45594761 | 45590327 | ID=Msa0643110-mRNA-1;Parent=Msa0643110;Name=Msa0643110-mRNA-1;_AED=0.06;_eAED=0.06;_QI=209|1|1|1|0.75|0.6|5|404|232 |
| chr4_3 | exon | 45590327 | 45590797 | 45590327 | ID=Msa0643110-mRNA-1:exon:10548;Parent=Msa0643110-mRNA-1 |
| chr4_3 | exon | 45591524 | 45591815 | 45591524 | ID=Msa0643110-mRNA-1:exon:10547;Parent=Msa0643110-mRNA-1 |
| chr4_3 | exon | 45592026 | 45592201 | 45592026 | ID=Msa0643110-mRNA-1:exon:10546;Parent=Msa0643110-mRNA-1 |
| chr4_3 | exon | 45594155 | 45594403 | 45594155 | ID=Msa0643110-mRNA-1:exon:10545;Parent=Msa0643110-mRNA-1 |
| chr4_3 | exon | 45594638 | 45594761 | 45594638 | ID=Msa0643110-mRNA-1:exon:10544;Parent=Msa0643110-mRNA-1 |
| chr4_3 | five_prime_UTR | 45594638 | 45594761 | 45594638 | ID=Msa0643110-mRNA-1:five_prime_utr;Parent=Msa0643110-mRNA-1 |
| chr4_3 | five_prime_UTR | 45594319 | 45594403 | 45594319 | ID=Msa0643110-mRNA-1:five_prime_utr;Parent=Msa0643110-mRNA-1 |
| chr4_3 | CDS | 45594155 | 45594318 | 45594155 | ID=Msa0643110-mRNA-1:cds;Parent=Msa0643110-mRNA-1 |
| chr4_3 | CDS | 45592026 | 45592201 | 45592026 | ID=Msa0643110-mRNA-1:cds;Parent=Msa0643110-mRNA-1 |
| chr4_3 | CDS | 45591524 | 45591815 | 45591524 | ID=Msa0643110-mRNA-1:cds;Parent=Msa0643110-mRNA-1 |
| chr4_3 | CDS | 45590731 | 45590797 | 45590731 | ID=Msa0643110-mRNA-1:cds;Parent=Msa0643110-mRNA-1 |
| chr4_3 | three_prime_UTR | 45590327 | 45590730 | 45590327 | ID=Msa0643110-mRNA-1:three_prime_utr;Parent=Msa0643110-mRNA-1 |
| Gene Sequence |
| Protein sequence |
