AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1329990


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329990 MtrunA17_Chr8g0372381 97.137 489 11 1 2 490 3 488 0.0 978
Msa1329990 MtrunA17_Chr2g0328781 56.871 473 204 0 8 480 20 492 0.0 586
Msa1329990 MtrunA17_Chr4g0032441 56.616 461 200 0 12 472 9 469 0.0 528
Msa1329990 MtrunA17_Chr3g0124811 48.093 472 242 1 5 476 15 483 1.65e-166 479
Msa1329990 MtrunA17_Chr8g0384741 47.761 469 242 1 12 480 73 538 7.30e-160 464
Msa1329990 MtrunA17_Chr1g0159811 49.631 407 202 1 12 418 20 423 1.26e-143 421
Msa1329990 MtrunA17_Chr3g0129271 89.062 192 21 0 174 365 30 221 2.95e-120 353
Msa1329990 MtrunA17_Chr4g0009161 90.654 107 9 1 174 279 115 221 1.94e-60 197
Msa1329990 MtrunA17_Chr2g0294411 28.936 470 303 10 7 461 87 540 2.54e-48 175
Msa1329990 MtrunA17_Chr4g0059521 29.384 422 281 10 30 442 74 487 9.12e-39 147
Msa1329990 MtrunA17_Chr3g0118081 29.343 426 284 10 24 440 98 515 3.58e-37 143
Msa1329990 MtrunA17_Chr3g0118121 29.263 434 290 10 16 440 60 485 6.78e-37 142
Msa1329990 MtrunA17_Chr2g0310091 29.912 341 219 11 104 434 193 523 1.22e-36 142
Msa1329990 MtrunA17_Chr4g0059221 28.606 409 253 12 61 441 138 535 5.91e-35 137
Msa1329990 MtrunA17_Chr3g0117861 29.539 369 243 9 84 441 171 533 6.38e-34 134
Msa1329990 MtrunA17_Chr8g0365221 28.414 454 286 15 7 441 99 532 8.19e-34 134
Msa1329990 MtrunA17_Chr8g0390651 27.409 467 297 16 7 456 61 502 1.07e-30 124
Msa1329990 MtrunA17_Chr6g0485301 30.460 348 221 11 105 441 156 493 3.19e-30 123
Msa1329990 MtrunA17_Chr8g0390631 29.275 345 229 9 105 441 148 485 6.11e-30 122
Msa1329990 MtrunA17_Chr6g0485311 29.942 344 226 10 105 440 154 490 1.35e-27 115
Msa1329990 MtrunA17_Chr4g0074171 26.037 434 279 14 13 423 53 467 5.40e-20 92.8
Msa1329990 MtrunA17_Chr1g0149961 28.571 322 212 9 108 423 158 467 8.81e-20 92.0
Msa1329990 MtrunA17_Chr4g0049641 25.635 394 271 10 19 401 92 474 3.36e-19 90.5
Msa1329990 MtrunA17_Chr2g0300801 26.346 353 231 12 108 446 155 492 1.36e-18 88.6
Msa1329990 MtrunA17_Chr2g0279751 25.313 399 266 13 19 401 65 447 2.36e-18 87.8
Msa1329990 MtrunA17_Chr1g0159821 48.387 62 32 0 7 68 15 76 5.50e-12 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1329990 AT4G36250.1 58.811 488 197 1 1 488 1 484 0.0 627
Msa1329990 AT1G44170.1 48.827 469 237 1 7 475 11 476 1.36e-164 474
Msa1329990 AT1G44170.2 48.827 469 237 1 7 475 11 476 1.36e-164 474
Msa1329990 AT4G34240.1 48.626 473 240 1 5 477 72 541 1.94e-158 461
Msa1329990 AT4G34240.4 48.626 473 240 1 5 477 57 526 2.07e-158 461
Msa1329990 AT1G44170.3 50.617 405 197 1 71 475 12 413 8.86e-151 437
Msa1329990 AT4G34240.3 50.758 396 192 1 82 477 7 399 5.19e-140 409
Msa1329990 AT4G34240.2 49.068 322 161 1 5 326 72 390 3.80e-102 311
Msa1329990 AT3G66658.1 31.279 438 276 9 6 427 86 514 2.29e-50 181
Msa1329990 AT3G66658.2 30.734 436 281 7 6 427 86 514 4.57e-50 181
Msa1329990 AT1G74920.2 32.619 420 266 10 30 440 69 480 1.71e-46 169
Msa1329990 AT1G74920.1 32.619 420 266 10 30 440 74 485 2.34e-46 169
Msa1329990 AT3G48170.1 30.260 423 276 11 30 442 74 487 2.51e-41 155
Msa1329990 AT1G79440.1 31.250 352 224 11 104 444 184 528 2.96e-38 147
Msa1329990 AT1G23800.1 27.876 452 291 13 7 441 92 525 1.12e-33 134
Msa1329990 AT3G48000.1 28.919 370 244 10 84 441 167 529 5.08e-33 132
Msa1329990 AT3G24503.1 27.874 348 236 11 102 441 152 492 1.99e-29 121
Msa1329990 AT2G24270.2 29.375 320 212 8 108 423 198 507 8.49e-22 99.0
Msa1329990 AT2G24270.3 28.402 338 228 8 108 441 158 485 1.59e-21 97.8
Msa1329990 AT2G24270.1 28.402 338 228 8 108 441 158 485 1.59e-21 97.8
Msa1329990 AT2G24270.4 28.402 338 228 8 108 441 158 485 1.61e-21 97.8
Msa1329990 AT1G54100.2 26.136 352 233 12 108 446 154 491 1.30e-19 92.0
Msa1329990 AT1G54100.1 26.136 352 233 12 108 446 154 491 1.30e-19 92.0
Msa1329990 AT2G14170.2 23.297 455 314 12 7 443 43 480 3.67e-15 78.2
Msa1329990 AT1G23800.2 29.210 291 175 11 7 282 92 366 4.58e-15 77.4
Msa1329990 AT2G14170.1 23.297 455 314 12 7 443 152 589 7.48e-15 77.8
Msa1329990 AT2G14170.3 22.983 409 287 10 7 401 152 546 2.52e-14 75.9

Find 94 sgRNAs with CRISPR-Local

Find 343 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCACCCTCAATGACCTTTA+TGG 0.167477 8_4:-49029852 None:intergenic
ATTGATTTGCAATACATTAT+AGG 0.167573 8_4:+49032675 Msa1329990:three_prime_UTR
GCAGATACTGCCCCAATTAT+TGG 0.191437 8_4:-49029737 None:intergenic
TTGGCATTGGATCCAATAAT+TGG 0.193325 8_4:+49029725 Msa1329990:CDS
TTTCTTGAAAGTTGCATCTT+TGG 0.201229 8_4:-49031728 None:intergenic
GGTGTTGGTCAGAGTGGTTT+TGG 0.239610 8_4:+49032406 Msa1329990:CDS
GCATAAATTGCAAGAGGTTT+TGG 0.241150 8_4:-49031700 None:intergenic
CCACCTAGCTCTAGAGTAAC+AGG 0.301770 8_4:-49030309 None:intergenic
ATATAAGATCCTACCTTCTT+AGG 0.324184 8_4:-49027646 None:intergenic
AAAATCAGCACAAAACTCTT+TGG 0.349014 8_4:+49027600 Msa1329990:CDS
AAAGCTCTTTACCAAGATCT+TGG 0.352241 8_4:+49027283 Msa1329990:CDS
TATACAGGTGAATAAAATTC+AGG 0.355113 8_4:+49031651 Msa1329990:intron
AGAACTACACCAAGTGGTTC+TGG 0.378314 8_4:-49027947 None:intergenic
GTTGCTGCTTCAATAGTTCA+TGG 0.387966 8_4:+49030952 Msa1329990:CDS
ACACCAATGTTGTTCATTGT+AGG 0.390428 8_4:-49027130 None:intergenic
GCATACAGACTGAATTACTT+TGG 0.403077 8_4:+49032559 Msa1329990:CDS
CATGCTGGAGCTTGCTCTGA+TGG 0.406820 8_4:-49029782 None:intergenic
TGGCATTGGATCCAATAATT+GGG 0.411604 8_4:+49029726 Msa1329990:CDS
CAAATTAGAATTCCTCAGAT+TGG 0.413705 8_4:+49032537 Msa1329990:CDS
TTGAGACAGTACTTCAAAAC+AGG 0.415007 8_4:+49027178 Msa1329990:CDS
TTATGTGATACACTACCATT+TGG 0.419289 8_4:+49032382 Msa1329990:CDS
CATATGGTGCTACATATGTT+AGG 0.420594 8_4:+49032592 Msa1329990:CDS
GATACCTTGGCTCAATTTCA+AGG 0.428430 8_4:-49032498 None:intergenic
GGTGGATCTAACAATATTGT+AGG 0.428757 8_4:-49031489 None:intergenic
AAGAATAGTAGGAGCAAAGT+GGG 0.429810 8_4:+49030637 Msa1329990:CDS
CTTAGACACTAATGCCATAA+AGG 0.430741 8_4:+49029838 Msa1329990:CDS
ATGGCAGTGAAAAGAATAGT+AGG 0.440145 8_4:+49030626 Msa1329990:CDS
GTGAAAGGCGTCTGAAAATA+CGG 0.443663 8_4:-49032743 None:intergenic
TAAGTAGTGAGGAAGGATAT+TGG 0.446928 8_4:-49029819 None:intergenic
GGAGAAGTACTCATCTGAAT+TGG 0.449394 8_4:+49030709 Msa1329990:CDS
ACACTATGCAGTGTTGGCAT+TGG 0.456843 8_4:+49029712 Msa1329990:intron
AAGCTCTTTACCAAGATCTT+GGG 0.464763 8_4:+49027284 Msa1329990:CDS
CAGGATGCTTCCCAAGATCT+TGG 0.467321 8_4:-49027294 None:intergenic
TGTAGTGGACAAGCATGTAT+AGG 0.471434 8_4:+49030665 Msa1329990:CDS
ATCATGACGGAAGAAATCTT+TGG 0.471719 8_4:+49031525 Msa1329990:CDS
GAAAGATCATCAAATATAGC+AGG 0.476851 8_4:-49030339 None:intergenic
CTTTGGACTAGTGCTACATA+TGG 0.480977 8_4:+49032576 Msa1329990:CDS
ATAGAGAAGCATTGTAGTTG+AGG 0.483711 8_4:-49032641 None:intergenic
ACACTACCATTTGGAGGTGT+TGG 0.484552 8_4:+49032391 Msa1329990:CDS
TCATCACGGTAAGCTTCAAC+AGG 0.489627 8_4:-49027313 None:intergenic
CTGATACTCACAGTGATCAC+TGG 0.503261 8_4:-49031558 None:intergenic
TGTGATACACTACCATTTGG+AGG 0.510788 8_4:+49032385 Msa1329990:CDS
TTGAGCCAAGGTATCCTCCT+TGG 0.511711 8_4:+49032506 Msa1329990:CDS
ATGTTTGAAACCACGGTGAA+AGG 0.514160 8_4:-49032758 None:intergenic
AATCGATTATTTGCTTGTTG+AGG 0.518086 8_4:+49030688 Msa1329990:CDS
ATAATTGGGGCAGTATCTGC+TGG 0.528260 8_4:+49029740 Msa1329990:CDS
AAAATGGATGGCTCCTAAGA+AGG 0.533456 8_4:+49027633 Msa1329990:CDS
TTGGCTCAATTTCAAGGCAA+AGG 0.542814 8_4:-49032492 None:intergenic
TGAACTACCTTAAAATCTGA+AGG 0.546236 8_4:-49030366 None:intergenic
GGTTAAGTAGAGCTTTGAGC+TGG 0.549576 8_4:-49027231 None:intergenic
CTCTGACCAACACCTCCAAA+TGG 0.550552 8_4:-49032397 None:intergenic
TAATGCCATAAAGGTCATTG+AGG 0.552612 8_4:+49029847 Msa1329990:CDS
GCAAGAAATGAAGAGCATGC+TGG 0.556083 8_4:-49029797 None:intergenic
TCTAATTTGAACTTACTCCA+AGG 0.558654 8_4:-49032523 None:intergenic
TTACTCCAAGGAGGATACCT+TGG 0.560424 8_4:-49032511 None:intergenic
ACTCCTGTTACTCTAGAGCT+AGG 0.562087 8_4:+49030306 Msa1329990:CDS
TTTGGAGGTGTTGGTCAGAG+TGG 0.564157 8_4:+49032400 Msa1329990:CDS
CTATTGAAGCAGCAACTAGA+GGG 0.568707 8_4:-49030945 None:intergenic
AAAGAATAGTAGGAGCAAAG+TGG 0.572509 8_4:+49030636 Msa1329990:CDS
ATTGTATCAGAAACTTCCTC+AGG 0.573193 8_4:+49031754 Msa1329990:CDS
GTGAATGCATAAATTGCAAG+AGG 0.573538 8_4:-49031706 None:intergenic
ACAGTGATCACTGGAAGTAG+TGG 0.575288 8_4:-49031549 None:intergenic
GGCATTGGATCCAATAATTG+GGG 0.578716 8_4:+49029727 Msa1329990:CDS
GCAAAGTGGGGAGTCTGTAG+TGG 0.579608 8_4:+49030650 Msa1329990:CDS
AATGCCATAAAGGTCATTGA+GGG 0.579952 8_4:+49029848 Msa1329990:CDS
AATCCTACAATGAACAACAT+TGG 0.581075 8_4:+49027127 Msa1329990:exon
ATGACTATGCTTGCCACACG+TGG 0.587456 8_4:-49030261 None:intergenic
TGTTGAAGCTTACCGTGATG+AGG 0.592972 8_4:+49027315 Msa1329990:CDS
GTATTGAATTTATAAACTCA+AGG 0.594021 8_4:+49031677 Msa1329990:CDS
CGAGAACATGTTTGAAACCA+CGG 0.597995 8_4:-49032765 None:intergenic
ATAAAGGTCATTGAGGGTGG+AGG 0.600689 8_4:+49029854 Msa1329990:CDS
GCCATAAAGGTCATTGAGGG+TGG 0.603042 8_4:+49029851 Msa1329990:CDS
TACAATGAACAACATTGGTG+TGG 0.607534 8_4:+49027132 Msa1329990:exon
TAGTGTCTAAGTAGTGAGGA+AGG 0.608264 8_4:-49029826 None:intergenic
AAAGATCATCAAATATAGCA+GGG 0.612978 8_4:-49030338 None:intergenic
GTCATGATTTCAGCATCTAG+TGG 0.618737 8_4:-49031510 None:intergenic
GATTGCACAATCTCTCAAAG+TGG 0.621444 8_4:-49030912 None:intergenic
AGAATAGTAGGAGCAAAGTG+GGG 0.628018 8_4:+49030638 Msa1329990:CDS
TTTGCCTTGAAATTGAGCCA+AGG 0.634603 8_4:+49032494 Msa1329990:CDS
ACTATTGAAGCAGCAACTAG+AGG 0.638003 8_4:-49030946 None:intergenic
TCAGTCTGTATGCCAATCTG+AGG 0.638610 8_4:-49032549 None:intergenic
AAAATGAGAACTACACCAAG+TGG 0.638963 8_4:-49027953 None:intergenic
GAGTTACTGCCAGAACCACT+TGG 0.646451 8_4:+49027938 Msa1329990:CDS
ATGATTTCAGCATCTAGTGG+TGG 0.655142 8_4:-49031507 None:intergenic
GCATTAGTGTCTAAGTAGTG+AGG 0.655550 8_4:-49029830 None:intergenic
ATTAAATATGACACTTCCTG+AGG 0.657142 8_4:-49031770 None:intergenic
GCTGCTTCAATAGTTCATGG+TGG 0.661244 8_4:+49030955 Msa1329990:CDS
TTTGCTGGGAAGAAAAGCAG+AGG 0.663378 8_4:-49027911 None:intergenic
AAGGCGTCTGAAAATACGGT+GGG 0.663404 8_4:-49032739 None:intergenic
AATTTGAACTTACTCCAAGG+AGG 0.664032 8_4:-49032520 None:intergenic
CCTGTTACTCTAGAGCTAGG+TGG 0.670414 8_4:+49030309 Msa1329990:CDS
ACTAGATGCTGAAATCATGA+CGG 0.689032 8_4:+49031512 Msa1329990:CDS
TGTCAAACGAGTATTTCCCA+TGG 0.692335 8_4:-49032435 None:intergenic
AAAGGCGTCTGAAAATACGG+TGG 0.717505 8_4:-49032740 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATTAAATAATTTATATATT+TGG - chr8_4:49028926-49028945 None:intergenic 0.0%
!!! TTAAGTATTTTTTTCTTTTT+GGG - chr8_4:49027521-49027540 None:intergenic 10.0%
!!! TTTAAGTATTTTTTTCTTTT+TGG - chr8_4:49027522-49027541 None:intergenic 10.0%
!! AACAAAAAATAAAATAAAAG+GGG - chr8_4:49027692-49027711 None:intergenic 10.0%
!!! CTCATTTTTATTTATATTTT+GGG - chr8_4:49028049-49028068 None:intergenic 10.0%
!!! ACTCATTTTTATTTATATTT+TGG - chr8_4:49028050-49028069 None:intergenic 10.0%
!!! GTATTAGTAATTTTTTTTAA+GGG - chr8_4:49028720-49028739 None:intergenic 10.0%
!!! AGTATTAGTAATTTTTTTTA+AGG - chr8_4:49028721-49028740 None:intergenic 10.0%
!!! TATATACATTTTAATTTGAT+TGG + chr8_4:49029995-49030014 Msa1329990:intron 10.0%
!! TAAAAGAATAAAACTTATAA+TGG - chr8_4:49031274-49031293 None:intergenic 10.0%
!!! TATACTTTTTTTTTAGGAAA+AGG + chr8_4:49027339-49027358 Msa1329990:intron 15.0%
!!! ATACTTTTTTTTTAGGAAAA+GGG + chr8_4:49027340-49027359 Msa1329990:intron 15.0%
!!! TTTTTTCATATAACAAAAAC+AGG - chr8_4:49028853-49028872 None:intergenic 15.0%
!!! ATTGTATTTTATTTTGTTAG+GGG - chr8_4:49029294-49029313 None:intergenic 15.0%
!!! GATTGTATTTTATTTTGTTA+GGG - chr8_4:49029295-49029314 None:intergenic 15.0%
!!! AAACTATATGTCAAATTTTT+GGG - chr8_4:49031101-49031120 None:intergenic 15.0%
!! AAAGTAAGTTAAAAATCAAA+TGG - chr8_4:49031881-49031900 None:intergenic 15.0%
!! TGTATATTAGTAGAAAAATA+TGG - chr8_4:49031906-49031925 None:intergenic 15.0%
!!! AGTTGAAAATAATATTTTTG+AGG + chr8_4:49032136-49032155 Msa1329990:intron 15.0%
!!! AAAAACAGTGATTTTTATTA+TGG - chr8_4:49032315-49032334 None:intergenic 15.0%
!!! TGAGGTTATACTTTTTTTTT+AGG + chr8_4:49027333-49027352 Msa1329990:intron 20.0%
!!! AACTATTTTCACTGTTATTA+TGG + chr8_4:49027867-49027886 Msa1329990:intron 20.0%
!! GTTGGAAATATATAGAAAAA+TGG + chr8_4:49028278-49028297 Msa1329990:intron 20.0%
!! CAAAAAAAAAAAAAACAGGA+GGG - chr8_4:49028819-49028838 None:intergenic 20.0%
!! TCAAAAAAAAAAAAAACAGG+AGG - chr8_4:49028820-49028839 None:intergenic 20.0%
!! TGCTCAAAAAAAAAAAAAAC+AGG - chr8_4:49028823-49028842 None:intergenic 20.0%
!!! TTTTTATAATAATAACCGGA+TGG + chr8_4:49028962-49028981 Msa1329990:intron 20.0%
!! CAATTCTTCTAACAAAATTA+AGG + chr8_4:49029219-49029238 Msa1329990:intron 20.0%
!!! TTGTATTTTATTTTGTTAGG+GGG - chr8_4:49029293-49029312 None:intergenic 20.0%
!!! GGATTGTATTTTATTTTGTT+AGG - chr8_4:49029296-49029315 None:intergenic 20.0%
!!! TAGTAACTTAGTAAGTTTTT+TGG + chr8_4:49030790-49030809 Msa1329990:intron 20.0%
!!! AAGTTCATGAGAAAATTTTA+TGG + chr8_4:49030841-49030860 Msa1329990:CDS 20.0%
!! AATTAATGTGTAGTGATTAT+AGG - chr8_4:49031022-49031041 None:intergenic 20.0%
!!! GAAACTATATGTCAAATTTT+TGG - chr8_4:49031102-49031121 None:intergenic 20.0%
!! GTATTGAATTTATAAACTCA+AGG + chr8_4:49031677-49031696 Msa1329990:CDS 20.0%
!!! ATTGATTTGCAATACATTAT+AGG + chr8_4:49032675-49032694 Msa1329990:three_prime_UTR 20.0%
!! CATCTTCATTTTCATGAATT+AGG - chr8_4:49027255-49027274 None:intergenic 25.0%
!! AAAAAAGTATAACCTCATCA+CGG - chr8_4:49027330-49027349 None:intergenic 25.0%
! TTATAATCCCATCAAAGTAA+AGG + chr8_4:49027710-49027729 Msa1329990:intron 25.0%
! TATAATCCCATCAAAGTAAA+GGG + chr8_4:49027711-49027730 Msa1329990:intron 25.0%
! TAGACAAAAGAAATTGATAC+AGG - chr8_4:49027751-49027770 None:intergenic 25.0%
! TAATTAACTGTTACATGTTC+TGG + chr8_4:49027785-49027804 Msa1329990:intron 25.0%
!!! TAGTTCTCATTTTTTCTTCT+TGG + chr8_4:49027963-49027982 Msa1329990:CDS 25.0%
!! AAATTTTGTGACTTACTGAT+TGG - chr8_4:49027995-49028014 None:intergenic 25.0%
!! AAGGAGTATAAAAAAAAGGT+GGG - chr8_4:49028023-49028042 None:intergenic 25.0%
!!! TTATTTATATTTTGGGACGA+AGG - chr8_4:49028042-49028061 None:intergenic 25.0%
!! ACCTAATTTTCACAACATTA+AGG - chr8_4:49028626-49028645 None:intergenic 25.0%
! TTAATGTTGTGAAAATTAGG+TGG + chr8_4:49028625-49028644 Msa1329990:intron 25.0%
!!! AATCACTTTAGAATATTGTG+CGG - chr8_4:49028745-49028764 None:intergenic 25.0%
! TTCATATAACAAAAACAGGA+GGG - chr8_4:49028849-49028868 None:intergenic 25.0%
! TTTCATATAACAAAAACAGG+AGG - chr8_4:49028850-49028869 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr8_4:49029143-49029162 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr8_4:49029108-49029127 None:intergenic 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr8_4:49029143-49029162 Msa1329990:intron 25.0%
! TTATTCCTCAAGTAATAGAA+AGG - chr8_4:49029544-49029563 None:intergenic 25.0%
! CTTTGATTATTGTCAAACTT+TGG + chr8_4:49029650-49029669 Msa1329990:intron 25.0%
! CAAGTTTAGTGAAATGAATT+AGG - chr8_4:49029952-49029971 None:intergenic 25.0%
! AATTCATTTCACTAAACTTG+TGG + chr8_4:49029952-49029971 Msa1329990:intron 25.0%
! TTTGAATTAGAATTTCCTTG+CGG + chr8_4:49030040-49030059 Msa1329990:intron 25.0%
! AAAGATCATCAAATATAGCA+GGG - chr8_4:49030341-49030360 None:intergenic 25.0%
!! TTCAAATCCTTCAGATTTTA+AGG + chr8_4:49030359-49030378 Msa1329990:CDS 25.0%
!!! AGCCAAAGTTTTTTAAATCA+CGG - chr8_4:49030549-49030568 None:intergenic 25.0%
! TGTCATATTATTGAAGATCA+AGG + chr8_4:49030577-49030596 Msa1329990:intron 25.0%
!!! TAGTTTGATTTTTACCAAGA+TGG + chr8_4:49030607-49030626 Msa1329990:intron 25.0%
! AAAATAAGCCCAAAATTTAG+AGG - chr8_4:49031156-49031175 None:intergenic 25.0%
!! TTTACTTCAGTTACTTTCAT+TGG - chr8_4:49031412-49031431 None:intergenic 25.0%
!! ATTTTATTCACCTGTATAGA+TGG - chr8_4:49031649-49031668 None:intergenic 25.0%
! TATACAGGTGAATAAAATTC+AGG + chr8_4:49031651-49031670 Msa1329990:intron 25.0%
! AGAGAGTAATATGTATCAAA+CGG - chr8_4:49031850-49031869 None:intergenic 25.0%
! TTAAGCTCAAAATTATGCAT+TGG + chr8_4:49032021-49032040 Msa1329990:intron 25.0%
AATCCTACAATGAACAACAT+TGG + chr8_4:49027127-49027146 Msa1329990:exon 30.0%
!! GAAAAACAAGAAGTGTTACA+TGG + chr8_4:49027200-49027219 Msa1329990:CDS 30.0%
!! GAGTGATTACTTTTGTAGAT+TGG + chr8_4:49027568-49027587 Msa1329990:intron 30.0%
!! TGATTACTTTTGTAGATTGG+AGG + chr8_4:49027571-49027590 Msa1329990:intron 30.0%
!! GATTACTTTTGTAGATTGGA+GGG + chr8_4:49027572-49027591 Msa1329990:intron 30.0%
!! ATTACTTTTGTAGATTGGAG+GGG + chr8_4:49027573-49027592 Msa1329990:intron 30.0%
AAAATCAGCACAAAACTCTT+TGG + chr8_4:49027600-49027619 Msa1329990:CDS 30.0%
ATATAAGATCCTACCTTCTT+AGG - chr8_4:49027649-49027668 None:intergenic 30.0%
CAAAAGAAATTGATACAGGT+TGG - chr8_4:49027747-49027766 None:intergenic 30.0%
!! TTTGTCCATACTTTTGTTGT+TGG + chr8_4:49027831-49027850 Msa1329990:intron 30.0%
TAAGTCCAACAACAAAAGTA+TGG - chr8_4:49027839-49027858 None:intergenic 30.0%
! AGGAGTATAAAAAAAAGGTG+GGG - chr8_4:49028022-49028041 None:intergenic 30.0%
! GAAGGAGTATAAAAAAAAGG+TGG - chr8_4:49028024-49028043 None:intergenic 30.0%
! GACGAAGGAGTATAAAAAAA+AGG - chr8_4:49028027-49028046 None:intergenic 30.0%
! TTGTTGACTAGAATATCCTT+AGG + chr8_4:49028210-49028229 Msa1329990:intron 30.0%
!! AATATCCTTAGGCTTTGTTT+GGG + chr8_4:49028221-49028240 Msa1329990:intron 30.0%
GAACTCAAAAATTGTATTGG+GGG - chr8_4:49028455-49028474 None:intergenic 30.0%
GGAACTCAAAAATTGTATTG+GGG - chr8_4:49028456-49028475 None:intergenic 30.0%
GGGAACTCAAAAATTGTATT+GGG - chr8_4:49028457-49028476 None:intergenic 30.0%
ATAAAAAATCCCCCTCATTT+GGG - chr8_4:49028479-49028498 None:intergenic 30.0%
AATAAAAAATCCCCCTCATT+TGG - chr8_4:49028480-49028499 None:intergenic 30.0%
AGGAAGAAATAGAAGACATT+GGG - chr8_4:49028537-49028556 None:intergenic 30.0%
!! ACAACATTAAGGCTTTGTTT+GGG - chr8_4:49028615-49028634 None:intergenic 30.0%
GCCTTAATGTTGTGAAAATT+AGG + chr8_4:49028622-49028641 Msa1329990:intron 30.0%
!! ATCACTTTAGAATATTGTGC+GGG - chr8_4:49028744-49028763 None:intergenic 30.0%
! TTAAGGCTTAATAGCAGTTT+TGG + chr8_4:49029236-49029255 Msa1329990:intron 30.0%
!! AGCATTGACTTTGTCAAAAT+TGG - chr8_4:49029361-49029380 None:intergenic 30.0%
GTAAACCTTTCTATTACTTG+AGG + chr8_4:49029536-49029555 Msa1329990:intron 30.0%
AACAACTACTGCTACAAAAA+TGG + chr8_4:49029888-49029907 Msa1329990:CDS 30.0%
ACAACTACTGCTACAAAAAT+GGG + chr8_4:49029889-49029908 Msa1329990:CDS 30.0%
! TGGGACAAAATATTTTTCAC+TGG + chr8_4:49029908-49029927 Msa1329990:CDS 30.0%
TGAAATGAATTAGGCTGTTA+TGG - chr8_4:49029943-49029962 None:intergenic 30.0%
GCAAGGAAATTCTAATTCAA+AGG - chr8_4:49030041-49030060 None:intergenic 30.0%
!! AATCGTTTCCTTTTGATTGA+TGG + chr8_4:49030162-49030181 Msa1329990:intron 30.0%
! GTTCTAGATTTATCTCTACA+TGG + chr8_4:49030217-49030236 Msa1329990:intron 30.0%
GAAAGATCATCAAATATAGC+AGG - chr8_4:49030342-49030361 None:intergenic 30.0%
TGAACTACCTTAAAATCTGA+AGG - chr8_4:49030369-49030388 None:intergenic 30.0%
GACCGTGATTTAAAAAACTT+TGG + chr8_4:49030544-49030563 Msa1329990:intron 30.0%
! AATCGATTATTTGCTTGTTG+AGG + chr8_4:49030688-49030707 Msa1329990:CDS 30.0%
! ATTTTATGGTGACAACATGA+TGG + chr8_4:49030855-49030874 Msa1329990:CDS 30.0%
AAGAGACTACTATTACATAC+AGG - chr8_4:49030999-49031018 None:intergenic 30.0%
TTTCTTGAAAGTTGCATCTT+TGG - chr8_4:49031731-49031750 None:intergenic 30.0%
ATTAAATATGACACTTCCTG+AGG - chr8_4:49031773-49031792 None:intergenic 30.0%
GAGAGTAATATGTATCAAAC+GGG - chr8_4:49031849-49031868 None:intergenic 30.0%
!! AATATTTTTGAGGAGTTGCA+TGG + chr8_4:49032146-49032165 Msa1329990:intron 30.0%
ACAAAGTTGAATCTATCGTA+TGG + chr8_4:49032282-49032301 Msa1329990:intron 30.0%
TTATGTGATACACTACCATT+TGG + chr8_4:49032382-49032401 Msa1329990:CDS 30.0%
!!! TATGCAATACAGCTTTTTCA+TGG - chr8_4:49032468-49032487 None:intergenic 30.0%
TCTAATTTGAACTTACTCCA+AGG - chr8_4:49032526-49032545 None:intergenic 30.0%
CAAATTAGAATTCCTCAGAT+TGG + chr8_4:49032537-49032556 Msa1329990:CDS 30.0%
ACACCAATGTTGTTCATTGT+AGG - chr8_4:49027133-49027152 None:intergenic 35.0%
TACAATGAACAACATTGGTG+TGG + chr8_4:49027132-49027151 Msa1329990:exon 35.0%
TTGAGACAGTACTTCAAAAC+AGG + chr8_4:49027178-49027197 Msa1329990:CDS 35.0%
AAAGCTCTTTACCAAGATCT+TGG + chr8_4:49027283-49027302 Msa1329990:CDS 35.0%
AAGCTCTTTACCAAGATCTT+GGG + chr8_4:49027284-49027303 Msa1329990:CDS 35.0%
CTTTGGACTGTGTTGAAAAA+TGG + chr8_4:49027617-49027636 Msa1329990:CDS 35.0%
AAAATGAGAACTACACCAAG+TGG - chr8_4:49027956-49027975 None:intergenic 35.0%
GTATAAAAAAAAGGTGGGGT+AGG - chr8_4:49028018-49028037 None:intergenic 35.0%
!! GAATATCCTTAGGCTTTGTT+TGG + chr8_4:49028220-49028239 Msa1329990:intron 35.0%
TCAAAAATTGTATTGGGGGA+GGG - chr8_4:49028451-49028470 None:intergenic 35.0%
GGGGAACTCAAAAATTGTAT+TGG - chr8_4:49028458-49028477 None:intergenic 35.0%
TAAAAAATCCCCCTCATTTG+GGG - chr8_4:49028478-49028497 None:intergenic 35.0%
AAGAAATAGAAGACATTGGG+AGG - chr8_4:49028534-49028553 None:intergenic 35.0%
GAGGAAGAAATAGAAGACAT+TGG - chr8_4:49028538-49028557 None:intergenic 35.0%
!! CACAACATTAAGGCTTTGTT+TGG - chr8_4:49028616-49028635 None:intergenic 35.0%
GTGGTAAGACTAATTAATGC+AGG + chr8_4:49028644-49028663 Msa1329990:intron 35.0%
CTTTGGTATATTACTCCATC+CGG - chr8_4:49028980-49028999 None:intergenic 35.0%
GATGGAGTAATATACCAAAG+AGG + chr8_4:49028980-49028999 Msa1329990:intron 35.0%
ACTTTGTCAAAATTGGACTG+GGG - chr8_4:49029354-49029373 None:intergenic 35.0%
GACTTTGTCAAAATTGGACT+GGG - chr8_4:49029355-49029374 None:intergenic 35.0%
TGACTTTGTCAAAATTGGAC+TGG - chr8_4:49029356-49029375 None:intergenic 35.0%
!!! CACGTGCGTAATTTTTTTAG+AGG + chr8_4:49029392-49029411 Msa1329990:intron 35.0%
TTTAATCTAACAGCAAGACG+AGG + chr8_4:49029606-49029625 Msa1329990:intron 35.0%
ACATTTACACTATGCAGTGT+TGG + chr8_4:49029706-49029725 Msa1329990:intron 35.0%
! TTGGCATTGGATCCAATAAT+TGG + chr8_4:49029725-49029744 Msa1329990:CDS 35.0%
! TGGCATTGGATCCAATAATT+GGG + chr8_4:49029726-49029745 Msa1329990:CDS 35.0%
TAAGTAGTGAGGAAGGATAT+TGG - chr8_4:49029822-49029841 None:intergenic 35.0%
CTTAGACACTAATGCCATAA+AGG + chr8_4:49029838-49029857 Msa1329990:CDS 35.0%
TAATGCCATAAAGGTCATTG+AGG + chr8_4:49029847-49029866 Msa1329990:CDS 35.0%
AATGCCATAAAGGTCATTGA+GGG + chr8_4:49029848-49029867 Msa1329990:CDS 35.0%
CGAAGAAACCATCAATCAAA+AGG - chr8_4:49030173-49030192 None:intergenic 35.0%
! ACATGGTGTATGACATTTTC+AGG + chr8_4:49030234-49030253 Msa1329990:intron 35.0%
! TATTCTTTTCACTGCCATCT+TGG - chr8_4:49030624-49030643 None:intergenic 35.0%
ATGGCAGTGAAAAGAATAGT+AGG + chr8_4:49030626-49030645 Msa1329990:CDS 35.0%
AAAGAATAGTAGGAGCAAAG+TGG + chr8_4:49030636-49030655 Msa1329990:CDS 35.0%
AAGAATAGTAGGAGCAAAGT+GGG + chr8_4:49030637-49030656 Msa1329990:CDS 35.0%
!!! GCTGCTATTTTTTTCTTCTG+AGG + chr8_4:49030753-49030772 Msa1329990:intron 35.0%
! AAATCCACGCCTCTAAATTT+TGG + chr8_4:49031144-49031163 Msa1329990:intron 35.0%
! AATCCACGCCTCTAAATTTT+GGG + chr8_4:49031145-49031164 Msa1329990:intron 35.0%
CAGTTTCTTACAACTTTGTC+AGG + chr8_4:49031457-49031476 Msa1329990:intron 35.0%
GGTGGATCTAACAATATTGT+AGG - chr8_4:49031492-49031511 None:intergenic 35.0%
ACTAGATGCTGAAATCATGA+CGG + chr8_4:49031512-49031531 Msa1329990:CDS 35.0%
! ATCATGACGGAAGAAATCTT+TGG + chr8_4:49031525-49031544 Msa1329990:CDS 35.0%
!! ACTTAACTTGCCATCTATAC+AGG + chr8_4:49031636-49031655 Msa1329990:intron 35.0%
! GCATAAATTGCAAGAGGTTT+TGG - chr8_4:49031703-49031722 None:intergenic 35.0%
GTGAATGCATAAATTGCAAG+AGG - chr8_4:49031709-49031728 None:intergenic 35.0%
ATTGTATCAGAAACTTCCTC+AGG + chr8_4:49031754-49031773 Msa1329990:CDS 35.0%
! TGTATCAAACGGGTTCAAAA+TGG - chr8_4:49031839-49031858 None:intergenic 35.0%
AATTTGAACTTACTCCAAGG+AGG - chr8_4:49032523-49032542 None:intergenic 35.0%
GCATACAGACTGAATTACTT+TGG + chr8_4:49032559-49032578 Msa1329990:CDS 35.0%
!! CATATGGTGCTACATATGTT+AGG + chr8_4:49032592-49032611 Msa1329990:CDS 35.0%
!! ATAGAGAAGCATTGTAGTTG+AGG - chr8_4:49032644-49032663 None:intergenic 35.0%
GGACTGTGTTGAAAAATGGA+TGG + chr8_4:49027621-49027640 Msa1329990:CDS 40.0%
AAAATGGATGGCTCCTAAGA+AGG + chr8_4:49027633-49027652 Msa1329990:CDS 40.0%
TCCCATCAAAGTAAAGGGAT+TGG + chr8_4:49027716-49027735 Msa1329990:intron 40.0%
CCCAATCCCTTTACTTTGAT+GGG - chr8_4:49027720-49027739 None:intergenic 40.0%
CCCATCAAAGTAAAGGGATT+GGG + chr8_4:49027717-49027736 Msa1329990:intron 40.0%
ACCCAATCCCTTTACTTTGA+TGG - chr8_4:49027721-49027740 None:intergenic 40.0%
AAACTCCCAAACAAAGCCTA+AGG - chr8_4:49028229-49028248 None:intergenic 40.0%
!! TTAGGCTTTGTTTGGGAGTT+TGG + chr8_4:49028228-49028247 Msa1329990:intron 40.0%
CTCAAAAATTGTATTGGGGG+AGG - chr8_4:49028452-49028471 None:intergenic 40.0%
!!! TTTTTGAGTTCCCCCAAATG+AGG + chr8_4:49028464-49028483 Msa1329990:intron 40.0%
!!! TTTTGAGTTCCCCCAAATGA+GGG + chr8_4:49028465-49028484 Msa1329990:intron 40.0%
AAAAAATCCCCCTCATTTGG+GGG - chr8_4:49028477-49028496 None:intergenic 40.0%
GGAAAAAAGGAAGGAACAAG+AGG - chr8_4:49028557-49028576 None:intergenic 40.0%
!!! GAGGGTTTTGGAAAAAAGGA+AGG - chr8_4:49028566-49028585 None:intergenic 40.0%
!! TAAGGCTTTGTTTGGGAGTT+TGG - chr8_4:49028608-49028627 None:intergenic 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr8_4:49029147-49029166 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr8_4:49029146-49029165 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr8_4:49029146-49029165 Msa1329990:intron 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr8_4:49029147-49029166 Msa1329990:intron 40.0%
TGAAGAATTCTGCAGCATAG+TGG - chr8_4:49029187-49029206 None:intergenic 40.0%
TCGCAACTTCCTGATACTTA+GGG - chr8_4:49029264-49029283 None:intergenic 40.0%
ATCGCAACTTCCTGATACTT+AGG - chr8_4:49029265-49029284 None:intergenic 40.0%
! GTATCAGGAAGTTGCGATTT+TGG + chr8_4:49029267-49029286 Msa1329990:intron 40.0%
! CTTTGTCAAAATTGGACTGG+GGG - chr8_4:49029353-49029372 None:intergenic 40.0%
! GGCATTGGATCCAATAATTG+GGG + chr8_4:49029727-49029746 Msa1329990:CDS 40.0%
TAGTGTCTAAGTAGTGAGGA+AGG - chr8_4:49029829-49029848 None:intergenic 40.0%
GCATTAGTGTCTAAGTAGTG+AGG - chr8_4:49029833-49029852 None:intergenic 40.0%
GCACATAAGTCCAATGTTAC+CGG - chr8_4:49030099-49030118 None:intergenic 40.0%
GTTGTTTGTGACCACAATTG+TGG + chr8_4:49030418-49030437 Msa1329990:intron 40.0%
TGTTGTCTCTGCTACAATTG+TGG + chr8_4:49030459-49030478 Msa1329990:intron 40.0%
AGAATAGTAGGAGCAAAGTG+GGG + chr8_4:49030638-49030657 Msa1329990:CDS 40.0%
!! TGTAGTGGACAAGCATGTAT+AGG + chr8_4:49030665-49030684 Msa1329990:CDS 40.0%
!! GGAGAAGTACTCATCTGAAT+TGG + chr8_4:49030709-49030728 Msa1329990:CDS 40.0%
GATTGCACAATCTCTCAAAG+TGG - chr8_4:49030915-49030934 None:intergenic 40.0%
CTATTGAAGCAGCAACTAGA+GGG - chr8_4:49030948-49030967 None:intergenic 40.0%
ACTATTGAAGCAGCAACTAG+AGG - chr8_4:49030949-49030968 None:intergenic 40.0%
! GTTGCTGCTTCAATAGTTCA+TGG + chr8_4:49030952-49030971 Msa1329990:CDS 40.0%
ATGATTTCAGCATCTAGTGG+TGG - chr8_4:49031510-49031529 None:intergenic 40.0%
GTCATGATTTCAGCATCTAG+TGG - chr8_4:49031513-49031532 None:intergenic 40.0%
TAAAGGATGGGAACTGGTTA+AGG + chr8_4:49032093-49032112 Msa1329990:intron 40.0%
AGAAATGCTAATTGATGCCC+CGG - chr8_4:49032218-49032237 None:intergenic 40.0%
TGTGATACACTACCATTTGG+AGG + chr8_4:49032385-49032404 Msa1329990:CDS 40.0%
TGTCAAACGAGTATTTCCCA+TGG - chr8_4:49032438-49032457 None:intergenic 40.0%
TTGGCTCAATTTCAAGGCAA+AGG - chr8_4:49032495-49032514 None:intergenic 40.0%
TTTGCCTTGAAATTGAGCCA+AGG + chr8_4:49032494-49032513 Msa1329990:CDS 40.0%
GATACCTTGGCTCAATTTCA+AGG - chr8_4:49032501-49032520 None:intergenic 40.0%
!! CTTTGGACTAGTGCTACATA+TGG + chr8_4:49032576-49032595 Msa1329990:CDS 40.0%
!! GTGAAAGGCGTCTGAAAATA+CGG - chr8_4:49032746-49032765 None:intergenic 40.0%
! ATGTTTGAAACCACGGTGAA+AGG - chr8_4:49032761-49032780 None:intergenic 40.0%
! CGAGAACATGTTTGAAACCA+CGG - chr8_4:49032768-49032787 None:intergenic 40.0%
!! GGTTAAGTAGAGCTTTGAGC+TGG - chr8_4:49027234-49027253 None:intergenic 45.0%
TCATCACGGTAAGCTTCAAC+AGG - chr8_4:49027316-49027335 None:intergenic 45.0%
TGTTGAAGCTTACCGTGATG+AGG + chr8_4:49027315-49027334 Msa1329990:CDS 45.0%
TTTGCTGGGAAGAAAAGCAG+AGG - chr8_4:49027914-49027933 None:intergenic 45.0%
!! CTGCTTTTCTTCCCAGCAAA+AGG + chr8_4:49027914-49027933 Msa1329990:CDS 45.0%
! GCAGTAACTCTCCTTTTGCT+GGG - chr8_4:49027928-49027947 None:intergenic 45.0%
AGAACTACACCAAGTGGTTC+TGG - chr8_4:49027950-49027969 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG + chr8_4:49028232-49028251 Msa1329990:intron 45.0%
TTTGGGAGTTTGGAGGGAAA+GGG + chr8_4:49028238-49028257 Msa1329990:intron 45.0%
! TTGTATTGGGGGAGGGTTTT+GGG - chr8_4:49028444-49028463 None:intergenic 45.0%
! ATTGTATTGGGGGAGGGTTT+TGG - chr8_4:49028445-49028464 None:intergenic 45.0%
! TTTGAGTTCCCCCAAATGAG+GGG + chr8_4:49028466-49028485 Msa1329990:intron 45.0%
TAGAAGACATTGGGAGGAGA+GGG - chr8_4:49028528-49028547 None:intergenic 45.0%
ATAGAAGACATTGGGAGGAG+AGG - chr8_4:49028529-49028548 None:intergenic 45.0%
!!! AGGGGAGGGTTTTGGAAAAA+AGG - chr8_4:49028570-49028589 None:intergenic 45.0%
! CTTTGTTTGGGAGTTTGGAG+GGG - chr8_4:49028233-49028252 None:intergenic 45.0%
!! GCTTTGTTTGGGAGTTTGGA+GGG - chr8_4:49028232-49028251 None:intergenic 45.0%
TTGTCTCGCATTGTCCTCTT+TGG - chr8_4:49028997-49029016 None:intergenic 45.0%
AGAATTCTGCAGCATAGTGG+CGG - chr8_4:49029184-49029203 None:intergenic 45.0%
GCAACTTCCTGATACTTAGG+GGG - chr8_4:49029262-49029281 None:intergenic 45.0%
CGCAACTTCCTGATACTTAG+GGG - chr8_4:49029263-49029282 None:intergenic 45.0%
CAAAAGGGGCAGTACTTAAG+GGG - chr8_4:49029321-49029340 None:intergenic 45.0%
GCAAAAGGGGCAGTACTTAA+GGG - chr8_4:49029322-49029341 None:intergenic 45.0%
TGCAAAAGGGGCAGTACTTA+AGG - chr8_4:49029323-49029342 None:intergenic 45.0%
! TACTGCCCCTTTTGCAGTTT+TGG + chr8_4:49029327-49029346 Msa1329990:intron 45.0%
TGACAAAGTCAATGCTGACG+TGG + chr8_4:49029365-49029384 Msa1329990:intron 45.0%
!! ACACTATGCAGTGTTGGCAT+TGG + chr8_4:49029712-49029731 Msa1329990:intron 45.0%
GCAGATACTGCCCCAATTAT+TGG - chr8_4:49029740-49029759 None:intergenic 45.0%
ATAATTGGGGCAGTATCTGC+TGG + chr8_4:49029740-49029759 Msa1329990:CDS 45.0%
! GCAAGAAATGAAGAGCATGC+TGG - chr8_4:49029800-49029819 None:intergenic 45.0%
TCCACCCTCAATGACCTTTA+TGG - chr8_4:49029855-49029874 None:intergenic 45.0%
ATAAAGGTCATTGAGGGTGG+AGG + chr8_4:49029854-49029873 Msa1329990:CDS 45.0%
CATTCATGCAGTAAGCATGC+CGG + chr8_4:49030077-49030096 Msa1329990:intron 45.0%
AGTAAGCATGCCGGTAACAT+TGG + chr8_4:49030086-49030105 Msa1329990:intron 45.0%
!! ATTTTCAGGAAGTCCACGTG+TGG + chr8_4:49030248-49030267 Msa1329990:intron 45.0%
!! ACTCCTGTTACTCTAGAGCT+AGG + chr8_4:49030306-49030325 Msa1329990:CDS 45.0%
CTGCTACAATTGTGGTCACA+TGG + chr8_4:49030467-49030486 Msa1329990:intron 45.0%
GCTGCTTCAATAGTTCATGG+TGG + chr8_4:49030955-49030974 Msa1329990:CDS 45.0%
AAGCCCAAAATTTAGAGGCG+TGG - chr8_4:49031151-49031170 None:intergenic 45.0%
ACAGTGATCACTGGAAGTAG+TGG - chr8_4:49031552-49031571 None:intergenic 45.0%
CTGATACTCACAGTGATCAC+TGG - chr8_4:49031561-49031580 None:intergenic 45.0%
! ACGGAGGGAGTATAAAGGAT+GGG + chr8_4:49032081-49032100 Msa1329990:intron 45.0%
GGAGTATAAAGGATGGGAAC+TGG + chr8_4:49032087-49032106 Msa1329990:intron 45.0%
! ACACTACCATTTGGAGGTGT+TGG + chr8_4:49032391-49032410 Msa1329990:CDS 45.0%
!! GTGTTGGTCAGAGTGGTTTT+GGG + chr8_4:49032407-49032426 Msa1329990:CDS 45.0%
TTACTCCAAGGAGGATACCT+TGG - chr8_4:49032514-49032533 None:intergenic 45.0%
TCAGTCTGTATGCCAATCTG+AGG - chr8_4:49032552-49032571 None:intergenic 45.0%
! AAGGCGTCTGAAAATACGGT+GGG - chr8_4:49032742-49032761 None:intergenic 45.0%
!! AAAGGCGTCTGAAAATACGG+TGG - chr8_4:49032743-49032762 None:intergenic 45.0%
!! AAAATATAATAAAAAGAAAA+AGG - chr8_4:49027484-49027503 None:intergenic 5.0%
!! TAACAAAAAATAAAATAAAA+GGG - chr8_4:49027693-49027712 None:intergenic 5.0%
!! ATAACAAAAAATAAAATAAA+AGG - chr8_4:49027694-49027713 None:intergenic 5.0%
!!! AATTTTTTTATAATAATAAC+CGG + chr8_4:49028958-49028977 Msa1329990:intron 5.0%
CAGGATGCTTCCCAAGATCT+TGG - chr8_4:49027297-49027316 None:intergenic 50.0%
TGGATGGCTCCTAAGAAGGT+AGG + chr8_4:49027637-49027656 Msa1329990:intron 50.0%
! GGCAGTAACTCTCCTTTTGC+TGG - chr8_4:49027929-49027948 None:intergenic 50.0%
GAGTTACTGCCAGAACCACT+TGG + chr8_4:49027938-49027957 Msa1329990:CDS 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG + chr8_4:49028231-49028250 Msa1329990:intron 50.0%
GTTTGGGAGTTTGGAGGGAA+AGG + chr8_4:49028237-49028256 Msa1329990:intron 50.0%
! TGTATTGGGGGAGGGTTTTG+GGG - chr8_4:49028443-49028462 None:intergenic 50.0%
TTGAGTTCCCCCAAATGAGG+GGG + chr8_4:49028467-49028486 Msa1329990:intron 50.0%
!! GGCTTTGTTTGGGAGTTTGG+AGG - chr8_4:49028231-49028250 None:intergenic 50.0%
GACAAAGTGAGTACACCCTC+CGG + chr8_4:49029012-49029031 Msa1329990:intron 50.0%
!! GTTTTGGCCCCCTAAGTATC+AGG + chr8_4:49029252-49029271 Msa1329990:intron 50.0%
TGGGGGCCAAAACTGCAAAA+GGG - chr8_4:49029336-49029355 None:intergenic 50.0%
GCCATAAAGGTCATTGAGGG+TGG + chr8_4:49029851-49029870 Msa1329990:CDS 50.0%
ATGACTATGCTTGCCACACG+TGG - chr8_4:49030264-49030283 None:intergenic 50.0%
!! CCACCTAGCTCTAGAGTAAC+AGG - chr8_4:49030312-49030331 None:intergenic 50.0%
!! CCTGTTACTCTAGAGCTAGG+TGG + chr8_4:49030309-49030328 Msa1329990:CDS 50.0%
TGACGTCGTGACCACAATTG+TGG - chr8_4:49030432-49030451 None:intergenic 50.0%
! GACGGAGGGAGTATAAAGGA+TGG + chr8_4:49032080-49032099 Msa1329990:intron 50.0%
TTGCTTCCTTAACCCGTGTC+CGG + chr8_4:49032196-49032215 Msa1329990:intron 50.0%
CTCTGACCAACACCTCCAAA+TGG - chr8_4:49032400-49032419 None:intergenic 50.0%
!! TTTGGAGGTGTTGGTCAGAG+TGG + chr8_4:49032400-49032419 Msa1329990:CDS 50.0%
!!! GGTGTTGGTCAGAGTGGTTT+TGG + chr8_4:49032406-49032425 Msa1329990:CDS 50.0%
!!! TTGGTCAGAGTGGTTTTGGG+AGG + chr8_4:49032410-49032429 Msa1329990:CDS 50.0%
!!! AGTGGTTTTGGGAGGTACCA+TGG + chr8_4:49032418-49032437 Msa1329990:CDS 50.0%
!!! GTGGTTTTGGGAGGTACCAT+GGG + chr8_4:49032419-49032438 Msa1329990:CDS 50.0%
! TTGAGCCAAGGTATCCTCCT+TGG + chr8_4:49032506-49032525 Msa1329990:CDS 50.0%
! TTTTCAGACGCCTTTCACCG+TGG + chr8_4:49032748-49032767 Msa1329990:three_prime_UTR 50.0%
GGAGTTTGGAGGGAAAGGGA+GGG + chr8_4:49028242-49028261 Msa1329990:intron 55.0%
GAGTTTGGAGGGAAAGGGAG+GGG + chr8_4:49028243-49028262 Msa1329990:intron 55.0%
!!! GGGTTTTGGGGGGTTATGGA+GGG - chr8_4:49028431-49028450 None:intergenic 55.0%
!!! AGGGTTTTGGGGGGTTATGG+AGG - chr8_4:49028432-49028451 None:intergenic 55.0%
!!! TATTGGGGGAGGGTTTTGGG+GGG - chr8_4:49028441-49028460 None:intergenic 55.0%
!! GTATTGGGGGAGGGTTTTGG+GGG - chr8_4:49028442-49028461 None:intergenic 55.0%
ACATTGGGAGGAGAGGGCTT+TGG - chr8_4:49028522-49028541 None:intergenic 55.0%
TTTGGGAGTTTGGAGGGGAG+GGG - chr8_4:49028598-49028617 None:intergenic 55.0%
GTTTGGGAGTTTGGAGGGGA+GGG - chr8_4:49028599-49028618 None:intergenic 55.0%
TGTTTGGGAGTTTGGAGGGG+AGG - chr8_4:49028600-49028619 None:intergenic 55.0%
GCGGTAACAAGTACACCCTC+CGG - chr8_4:49029165-49029184 None:intergenic 55.0%
GGGGGCCAAAACTGCAAAAG+GGG - chr8_4:49029335-49029354 None:intergenic 55.0%
CTGGGGGCCAAAACTGCAAA+AGG - chr8_4:49029337-49029356 None:intergenic 55.0%
! CATGCTGGAGCTTGCTCTGA+TGG - chr8_4:49029785-49029804 None:intergenic 55.0%
GCAAAGTGGGGAGTCTGTAG+TGG + chr8_4:49030650-49030669 Msa1329990:CDS 55.0%
TGCTTCCTTAACCCGTGTCC+GGG + chr8_4:49032197-49032216 Msa1329990:intron 55.0%
CTAATTGATGCCCCGGACAC+GGG - chr8_4:49032211-49032230 None:intergenic 55.0%
GCTAATTGATGCCCCGGACA+CGG - chr8_4:49032212-49032231 None:intergenic 55.0%
GGGAGTTTGGAGGGAAAGGG+AGG + chr8_4:49028241-49028260 Msa1329990:intron 60.0%
TTTGGAGGGAAAGGGAGGGG+AGG + chr8_4:49028246-49028265 Msa1329990:intron 60.0%
TTGGAGGGAAAGGGAGGGGA+GGG + chr8_4:49028247-49028266 Msa1329990:intron 60.0%
GAAAGGGAGGGGAGGGCTTT+GGG + chr8_4:49028254-49028273 Msa1329990:intron 60.0%
AAAGGGAGGGGAGGGCTTTG+GGG + chr8_4:49028255-49028274 Msa1329990:intron 60.0%
!!! GGGAGGGTTTTGGGGGGTTA+TGG - chr8_4:49028435-49028454 None:intergenic 60.0%
! TTGGGAGGAGAGGGCTTTGG+AGG - chr8_4:49028519-49028538 None:intergenic 60.0%
AGGGGCAGTACTTAAGGGGC+TGG - chr8_4:49029317-49029336 None:intergenic 60.0%
GCTTCCTTAACCCGTGTCCG+GGG + chr8_4:49032198-49032217 Msa1329990:intron 60.0%
GGAAAGGGAGGGGAGGGCTT+TGG + chr8_4:49028253-49028272 Msa1329990:intron 65.0%
! AAGGGAGGGGAGGGCTTTGG+GGG + chr8_4:49028256-49028275 Msa1329990:intron 65.0%
GAGTTTGGAGGGGAGGGGAG+GGG - chr8_4:49028593-49028612 None:intergenic 65.0%
GGAGTTTGGAGGGGAGGGGA+GGG - chr8_4:49028594-49028613 None:intergenic 65.0%
GCGCGAGATTGCTGACCGCA+AGG - chr8_4:49030058-49030077 None:intergenic 65.0%
! GATGCCCCGGACACGGGTTA+AGG - chr8_4:49032205-49032224 None:intergenic 65.0%
!! GAGGGGAGGGCTTTGGGGGT+TGG + chr8_4:49028260-49028279 Msa1329990:intron 70.0%
! GGGAGGGGAGGGGAGGGTTT+TGG - chr8_4:49028578-49028597 None:intergenic 70.0%
TTGGAGGGGAGGGGAGGGGA+GGG - chr8_4:49028589-49028608 None:intergenic 70.0%
TTTGGAGGGGAGGGGAGGGG+AGG - chr8_4:49028590-49028609 None:intergenic 70.0%
GGGAGTTTGGAGGGGAGGGG+AGG - chr8_4:49028595-49028614 None:intergenic 70.0%
TGGAGGGGAGGGGAGGGGAG+GGG - chr8_4:49028588-49028607 None:intergenic 75.0%
! GGGGAGGGGAGGGGAGGGGA+GGG - chr8_4:49028584-49028603 None:intergenic 80.0%
! AGGGGAGGGGAGGGGAGGGG+AGG - chr8_4:49028585-49028604 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 49027078 49032866 49027078 ID=Msa1329990;Name=Msa1329990
chr8_4 mRNA 49027078 49032866 49027078 ID=Msa1329990-mRNA-1;Parent=Msa1329990;Name=Msa1329990-mRNA-1;_AED=0.14;_eAED=0.14;_QI=58|1|1|1|1|1|10|233|490
chr8_4 exon 49027078 49027336 49027078 ID=Msa1329990-mRNA-1:exon:14123;Parent=Msa1329990-mRNA-1
chr8_4 exon 49027586 49027654 49027586 ID=Msa1329990-mRNA-1:exon:14124;Parent=Msa1329990-mRNA-1
chr8_4 exon 49027902 49027998 49027902 ID=Msa1329990-mRNA-1:exon:14125;Parent=Msa1329990-mRNA-1
chr8_4 exon 49029723 49029929 49029723 ID=Msa1329990-mRNA-1:exon:14126;Parent=Msa1329990-mRNA-1
chr8_4 exon 49030256 49030380 49030256 ID=Msa1329990-mRNA-1:exon:14127;Parent=Msa1329990-mRNA-1
chr8_4 exon 49030626 49030730 49030626 ID=Msa1329990-mRNA-1:exon:14128;Parent=Msa1329990-mRNA-1
chr8_4 exon 49030826 49030998 49030826 ID=Msa1329990-mRNA-1:exon:14129;Parent=Msa1329990-mRNA-1
chr8_4 exon 49031479 49031569 49031479 ID=Msa1329990-mRNA-1:exon:14130;Parent=Msa1329990-mRNA-1
chr8_4 exon 49031658 49031807 49031658 ID=Msa1329990-mRNA-1:exon:14131;Parent=Msa1329990-mRNA-1
chr8_4 exon 49032379 49032866 49032379 ID=Msa1329990-mRNA-1:exon:14132;Parent=Msa1329990-mRNA-1
chr8_4 five_prime_UTR 49027078 49027135 49027078 ID=Msa1329990-mRNA-1:five_prime_utr;Parent=Msa1329990-mRNA-1
chr8_4 CDS 49027136 49027336 49027136 ID=Msa1329990-mRNA-1:cds;Parent=Msa1329990-mRNA-1
chr8_4 CDS 49027586 49027654 49027586 ID=Msa1329990-mRNA-1:cds;Parent=Msa1329990-mRNA-1
chr8_4 CDS 49027902 49027998 49027902 ID=Msa1329990-mRNA-1:cds;Parent=Msa1329990-mRNA-1
chr8_4 CDS 49029723 49029929 49029723 ID=Msa1329990-mRNA-1:cds;Parent=Msa1329990-mRNA-1
chr8_4 CDS 49030256 49030380 49030256 ID=Msa1329990-mRNA-1:cds;Parent=Msa1329990-mRNA-1
chr8_4 CDS 49030626 49030730 49030626 ID=Msa1329990-mRNA-1:cds;Parent=Msa1329990-mRNA-1
chr8_4 CDS 49030826 49030998 49030826 ID=Msa1329990-mRNA-1:cds;Parent=Msa1329990-mRNA-1
chr8_4 CDS 49031479 49031569 49031479 ID=Msa1329990-mRNA-1:cds;Parent=Msa1329990-mRNA-1
chr8_4 CDS 49031658 49031807 49031658 ID=Msa1329990-mRNA-1:cds;Parent=Msa1329990-mRNA-1
chr8_4 CDS 49032379 49032633 49032379 ID=Msa1329990-mRNA-1:cds;Parent=Msa1329990-mRNA-1
chr8_4 three_prime_UTR 49032634 49032866 49032634 ID=Msa1329990-mRNA-1:three_prime_utr;Parent=Msa1329990-mRNA-1
Gene Sequence

>Msa1329990

ATGAACAACATTGGTGTGGAAGTAGAAGAAACTGTAAGAGATTTGAGACAGTACTTCAAAACAGGAAAAACAAGAAGTGTTACATGGAGAAAAAACCAGCTCAAAGCTCTACTTAACCTAATTCATGAAAATGAAGATGCTATATCTAAAGCTCTTTACCAAGATCTTGGGAAGCATCCTGTTGAAGCTTACCGTGATGAGATTGGAGGGGTAGAAAAATCAGCACAAAACTCTTTGGACTGTGTTGAAAAATGGATGGCTCCTAAGAAGAGCAATATTCCTCTGCTTTTCTTCCCAGCAAAAGGAGAGTTACTGCCAGAACCACTTGGTGTAGTTCTCATTTTTTCTTCTTGGAACTTTCCAATCATGTTGGCATTGGATCCAATAATTGGGGCAGTATCTGCTGGAAATGTTGTAGTTATAAAACCATCAGAGCAAGCTCCAGCATGCTCTTCATTTCTTGCCAATATCCTTCCTCACTACTTAGACACTAATGCCATAAAGGTCATTGAGGGTGGAGGAGATGTCTGTGAACAACTACTGCTACAAAAATGGGACAAAATATTTTTCACTGGAAGTCCACGTGTGGCAAGCATAGTCATGTCTTCTGCTGCAAGAAATTTAACTCCTGTTACTCTAGAGCTAGGTGGAAAATGCCCTGCTATATTTGATGATCTTTCAAATCCTTCAGATTTTAAGATGGCAGTGAAAAGAATAGTAGGAGCAAAGTGGGGAGTCTGTAGTGGACAAGCATGTATAGGAATCGATTATTTGCTTGTTGAGGAGAAGTACTCATCTGAATTGATAGAACTATTAAAGAAGTTCATGAGAAAATTTTATGGTGACAACATGATGGAGTCAAAGACACTCTCAAGAATAATAAATAAGAACCACTTTGAGAGATTGTGCAATCTTCTTAAAGACCCTCTAGTTGCTGCTTCAATAGTTCATGGTGGTTCAGTTGATGAAACAAACCTGTTTATTGAGCCTACAATATTGTTAGATCCACCACTAGATGCTGAAATCATGACGGAAGAAATCTTTGGTCCACTACTTCCAGTGATCACTGTGAATAAAATTCAGGAAAGTATTGAATTTATAAACTCAAGGCCAAAACCTCTTGCAATTTATGCATTCACCAAAGATGCAACTTTCAAGAAAAAGATTGTATCAGAAACTTCCTCAGGAAGTGTCATATTTAATGACACACTAGTTCAATTTTTATGTGATACACTACCATTTGGAGGTGTTGGTCAGAGTGGTTTTGGGAGGTACCATGGGAAATACTCGTTTGACACATTCAGCCATGAAAAAGCTGTATTGCATAGACACCTTTGCCTTGAAATTGAGCCAAGGTATCCTCCTTGGAGTAAGTTCAAATTAGAATTCCTCAGATTGGCATACAGACTGAATTACTTTGGACTAGTGCTACATATGGTGCTACATATGTTAGGATTGAAAAAACACAACTAG

Protein sequence

>Msa1329990

MNNIGVEVEETVRDLRQYFKTGKTRSVTWRKNQLKALLNLIHENEDAISKALYQDLGKHPVEAYRDEIGGVEKSAQNSLDCVEKWMAPKKSNIPLLFFPAKGELLPEPLGVVLIFSSWNFPIMLALDPIIGAVSAGNVVVIKPSEQAPACSSFLANILPHYLDTNAIKVIEGGGDVCEQLLLQKWDKIFFTGSPRVASIVMSSAARNLTPVTLELGGKCPAIFDDLSNPSDFKMAVKRIVGAKWGVCSGQACIGIDYLLVEEKYSSELIELLKKFMRKFYGDNMMESKTLSRIINKNHFERLCNLLKDPLVAASIVHGGSVDETNLFIEPTILLDPPLDAEIMTEEIFGPLLPVITVNKIQESIEFINSRPKPLAIYAFTKDATFKKKIVSETSSGSVIFNDTLVQFLCDTLPFGGVGQSGFGRYHGKYSFDTFSHEKAVLHRHLCLEIEPRYPPWSKFKLEFLRLAYRLNYFGLVLHMVLHMLGLKKHN*