AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0044840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044840 MtrunA17_Chr1g0211561 98.164 926 16 1 1 925 1 926 0.0 1880
Msa0044840 MtrunA17_Chr2g0300341 44.811 607 283 6 313 914 174 733 4.50e-178 533
Msa0044840 MtrunA17_Chr3g0136161 39.403 670 344 10 253 909 144 764 1.18e-162 494
Msa0044840 MtrunA17_Chr3g0136211 40.147 680 339 11 253 916 143 770 7.43e-160 487
Msa0044840 MtrunA17_Chr8g0369461 42.301 617 307 7 301 916 130 698 3.96e-155 473
Msa0044840 MtrunA17_Chr3g0136141 40.902 643 313 14 289 914 143 735 3.96e-151 464
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0044840 AT1G78610.1 57.424 916 273 14 49 922 10 850 0.0 954
Msa0044840 AT2G17010.1 53.669 954 351 21 5 921 4 903 0.0 913
Msa0044840 AT1G53470.1 55.408 906 329 19 49 920 11 875 0.0 907
Msa0044840 AT3G14810.1 54.153 927 308 19 49 920 11 875 0.0 903
Msa0044840 AT3G14810.2 51.456 927 298 21 49 920 11 840 0.0 827
Msa0044840 AT2G17000.1 52.059 874 338 15 56 921 36 836 0.0 818
Msa0044840 AT2G17000.2 52.059 874 338 15 56 921 36 836 0.0 818
Msa0044840 AT2G17010.2 46.893 708 266 20 4 665 3 646 0.0 549
Msa0044840 AT5G12080.1 41.981 636 316 8 276 906 143 730 1.30e-170 514
Msa0044840 AT5G12080.2 41.981 636 316 8 276 906 143 730 1.30e-170 514
Msa0044840 AT5G12080.3 41.981 636 316 8 276 906 143 730 1.30e-170 514
Msa0044840 AT5G19520.1 38.880 607 320 6 302 906 181 738 4.95e-150 461
Msa0044840 AT5G19520.2 38.880 607 320 6 302 906 181 738 4.95e-150 461
Msa0044840 AT1G49260.1 28.926 121 81 3 373 491 5 122 3.30e-11 62.8

Find 255 sgRNAs with CRISPR-Local

Find 363 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCTCCTTCAAATAGATTTA+TGG 0.106249 1_1:+76447603 None:intergenic
TTCCAAGCCGACACGTTATT+TGG 0.141191 1_1:+76448390 None:intergenic
CCCATTATCATCAGATTTCT+TGG 0.159517 1_1:+76448464 None:intergenic
CCATTATCATACTGGTTATT+TGG 0.196571 1_1:-76446921 Msa0044840:CDS
AGAAAACACATTTCAGTCTT+TGG 0.216359 1_1:-76449193 Msa0044840:CDS
TTCTCTCCAAATCTTGTTAT+TGG 0.218451 1_1:+76449880 None:intergenic
GGTTATTTGGCTCTTGATAT+TGG 0.220545 1_1:-76446908 Msa0044840:CDS
TTTGAAGGAGCGTCTGATTC+TGG 0.222745 1_1:-76447592 Msa0044840:CDS
GGAAAATCCTCTTCCATAAA+AGG 0.232230 1_1:+76449227 None:intergenic
TGGTTTCTGATTGGGTTATT+AGG 0.232570 1_1:-76449025 Msa0044840:CDS
TAAAACTAAGTCCAGATTAA+TGG 0.259824 1_1:-76449351 Msa0044840:CDS
TCCAAGAAATCTGATGATAA+TGG 0.259886 1_1:-76448465 Msa0044840:CDS
CTCTGTGGCAGCTTAAGTTT+TGG 0.268313 1_1:-76449088 Msa0044840:CDS
AGAATTGAAAGGGTCTTTCT+AGG 0.285153 1_1:+76450268 None:intergenic
GTCTTTGGATTCTTCTTGAA+TGG 0.297980 1_1:-76449178 Msa0044840:CDS
GTCTTGGTTGCATTTATATT+CGG 0.298230 1_1:-76446841 Msa0044840:CDS
TTGTCCAGGTTAATGCCTTC+AGG 0.299126 1_1:-76447026 Msa0044840:intron
TCAATATGTGACCAAGGTTT+TGG 0.301334 1_1:-76448832 Msa0044840:CDS
TATGAAGAGGTTAATGAATA+TGG 0.306929 1_1:-76448367 Msa0044840:CDS
ATAGTTTGCATCACAGGGTT+AGG 0.308441 1_1:+76450082 None:intergenic
AAGAAAAGAAAGTAGGTATT+TGG 0.324408 1_1:+76450181 None:intergenic
AACACTCTCGGGGCCGCCTT+TGG 0.329276 1_1:-76448679 Msa0044840:CDS
CTTAGTTGCCATTATCATAC+TGG 0.329463 1_1:-76446929 Msa0044840:CDS
AATGACGACGGTCGTGATTA+GGG 0.330012 1_1:+76449486 None:intergenic
GCAAATCCGCGTTGAAGAAC+TGG 0.330167 1_1:-76447561 Msa0044840:CDS
CCAAGAAATCTGATGATAAT+GGG 0.332159 1_1:-76448464 Msa0044840:CDS
CGCGGTCAAACTGTTATATA+TGG 0.333393 1_1:+76445746 None:intergenic
TCCACGTTTAACTAAACTTT+AGG 0.333542 1_1:-76450157 Msa0044840:five_prime_UTR
CCCAAGCCAATAACAAGATT+TGG 0.335913 1_1:-76449886 Msa0044840:CDS
TATGTCATTGGACATGGATT+TGG 0.336553 1_1:-76449720 Msa0044840:CDS
GAATGACGACGGTCGTGATT+AGG 0.339038 1_1:+76449485 None:intergenic
ATGTGAGTACATACTTTGAT+AGG 0.348611 1_1:-76448737 Msa0044840:CDS
TCCAAATCTTGTTATTGGCT+TGG 0.354363 1_1:+76449885 None:intergenic
CCAAATAACCAGTATGATAA+TGG 0.354637 1_1:+76446921 None:intergenic
GGTGAAAACTCTAGTGGTTA+AGG 0.355532 1_1:-76448778 Msa0044840:CDS
TTAGTAGCAAGGACACTGTT+AGG 0.356809 1_1:+76446555 None:intergenic
CCAAATCTTGTTATTGGCTT+GGG 0.357939 1_1:+76449886 None:intergenic
ACAATCACAAATTGAGTAGA+AGG 0.360639 1_1:-76446037 Msa0044840:exon
GGGATTGGGAATGGTGGTGG+TGG 0.363657 1_1:-76448444 Msa0044840:CDS
TGCAAAATTGTGTTTGGTTA+GGG 0.370280 1_1:-76448923 Msa0044840:CDS
TGTTCTAATATGTGGTAGAT+TGG 0.372968 1_1:-76449045 Msa0044840:CDS
AAAGAACCCTCTTTCTCAAT+AGG 0.374828 1_1:+76448973 None:intergenic
GTGCAAAATTGTGTTTGGTT+AGG 0.376067 1_1:-76448924 Msa0044840:CDS
AACCTTCCACTCTTGATGTT+AGG 0.378450 1_1:+76448549 None:intergenic
TTTATGTAAAGAGTTTCTTA+TGG 0.381078 1_1:-76445935 Msa0044840:three_prime_UTR
AAGTTTGTTCACTGCGGTTT+TGG 0.385413 1_1:+76446969 None:intergenic
CTGTTTCTTGGTGGGTACTT+TGG 0.387096 1_1:-76448808 Msa0044840:CDS
TTCACCGTTTATAGTCTTGA+AGG 0.388017 1_1:-76446275 Msa0044840:CDS
CAGCAAGGATTCGCCGTCAA+TGG 0.388996 1_1:-76449534 Msa0044840:CDS
CTGAGAAGCATAAGATTTGA+AGG 0.394553 1_1:+76450051 None:intergenic
GATCCACCGTCGCAACTAAT+CGG 0.395068 1_1:-76449776 Msa0044840:CDS
AAATCTGATGATAATGGGAT+TGG 0.402802 1_1:-76448459 Msa0044840:CDS
ATCGGGTGGGTCCATTAATC+TGG 0.405460 1_1:+76449340 None:intergenic
TGGTAGATTGGTTTCTGATT+GGG 0.406121 1_1:-76449033 Msa0044840:CDS
CCACTTTAACCATGTTCAAT+TGG 0.408862 1_1:+76446245 None:intergenic
TGTTGGCGGTCGTGGAGAAT+AGG 0.409760 1_1:+76449977 None:intergenic
GGCTGCTGTGTTGGCGGTCG+TGG 0.411125 1_1:+76449969 None:intergenic
GGTGGGTACTTTGGTGTGGT+TGG 0.411905 1_1:-76448799 Msa0044840:CDS
ATAAATCAAAGAGTTTCTAT+TGG 0.418489 1_1:-76445864 Msa0044840:three_prime_UTR
CATCTATCTCCCACATCAAA+TGG 0.420933 1_1:+76446766 None:intergenic
GTGGTAGATTGGTTTCTGAT+TGG 0.422054 1_1:-76449034 Msa0044840:CDS
TTGAAGGAGCGTCTGATTCT+GGG 0.423129 1_1:-76447591 Msa0044840:CDS
GATCCTCTAGCTTAGCTTTG+TGG 0.429132 1_1:+76449795 None:intergenic
TTTGAGTGTTCCTTTGTTGA+GGG 0.432061 1_1:-76449117 Msa0044840:CDS
ACATGGGAGAAAGATATATC+AGG 0.439374 1_1:-76446189 Msa0044840:CDS
AATGGACCCACCCGATGAAC+CGG 0.440292 1_1:-76449333 Msa0044840:CDS
TAGGAAAGGCACTAGCTCTT+AGG 0.441340 1_1:+76448568 None:intergenic
ACTCTCGGGGCCGCCTTTGG+TGG 0.444265 1_1:-76448676 Msa0044840:CDS
TTGCTGTGTCTTCTCCGAAC+AGG 0.449131 1_1:+76449551 None:intergenic
TGTGAGCTCACAACTTGTCT+TGG 0.453149 1_1:-76446857 Msa0044840:CDS
TGATCCTTCAAGACTATAAA+CGG 0.453207 1_1:+76446271 None:intergenic
TAACAGTGTCCTTGCTACTA+AGG 0.454493 1_1:-76446553 Msa0044840:CDS
GATTAGCTTGATATCTACTA+AGG 0.455955 1_1:-76445901 Msa0044840:three_prime_UTR
TAGTTTGCATCACAGGGTTA+GGG 0.456148 1_1:+76450083 None:intergenic
GTTGGCGGTCGTGGAGAATA+GGG 0.456545 1_1:+76449978 None:intergenic
TGTCCAGGTTAATGCCTTCA+GGG 0.458204 1_1:-76447025 Msa0044840:intron
GGAATTTCCTATTGAGAAAG+AGG 0.459561 1_1:-76448980 Msa0044840:CDS
TCACAGGGTTAGGGTCTCTC+TGG 0.464016 1_1:+76450092 None:intergenic
AGCAAGGATTCGCCGTCAAT+GGG 0.468587 1_1:-76449533 Msa0044840:CDS
TAGAGAGTCGCGACTCGGTA+AGG 0.469846 1_1:+76445777 None:intergenic
AGATCTTCTATCCGGTTCAT+CGG 0.470858 1_1:+76449322 None:intergenic
CTTTGAGTGTTCCTTTGTTG+AGG 0.472992 1_1:-76449118 Msa0044840:CDS
AAAACCATAAATCTATTTGA+AGG 0.473072 1_1:-76447607 Msa0044840:CDS
ATAAAACGCATTAAGTCCTC+AGG 0.474659 1_1:+76447649 None:intergenic
AAGCTGTGCAAAATTGTGTT+TGG 0.475551 1_1:-76448929 Msa0044840:CDS
TTCTATCCGGTTCATCGGGT+GGG 0.475815 1_1:+76449327 None:intergenic
CTTCATAAACAGCGTGCCTC+CGG 0.476167 1_1:-76449746 Msa0044840:CDS
CGAGTTGAAAGTTAGTTTCG+AGG 0.476779 1_1:-76449615 Msa0044840:CDS
TATATCTTTCTCCCATGTCT+TGG 0.481099 1_1:+76446194 None:intergenic
ACATGGTTAAAGTGGCGATC+TGG 0.481594 1_1:-76446237 Msa0044840:CDS
TCTCCATCACCTGCGGGTAA+TGG 0.484223 1_1:-76449464 Msa0044840:CDS
TTTCAGGTGGGGTAGCTACA+TGG 0.484332 1_1:+76446475 None:intergenic
ATTATCGTATCTCAGAAATA+CGG 0.486565 1_1:+76446593 None:intergenic
TCAATAGAATCTCCCATGTC+AGG 0.487717 1_1:+76446507 None:intergenic
CGGAAAGTTAACGCCGGTGG+AGG 0.491627 1_1:-76449660 Msa0044840:CDS
TAATGAATATGGTTCGGCAT+GGG 0.492101 1_1:-76448356 Msa0044840:CDS
TCATCAGATTTCTTGGAAAG+TGG 0.493438 1_1:+76448471 None:intergenic
CGTCAATGGGTGAGTATGCT+CGG 0.493782 1_1:-76449520 Msa0044840:CDS
ATGTTGCTAGGCGCGGCTGC+AGG 0.494616 1_1:-76448221 Msa0044840:intron
ATCCCATTCGAATTTGAAGC+TGG 0.495504 1_1:+76449590 None:intergenic
AATGGGATTGGGAATGGTGG+TGG 0.496908 1_1:-76448447 Msa0044840:CDS
GAAAAGAGCGGCTGCTGTGT+TGG 0.498772 1_1:+76449960 None:intergenic
CTGATCGTCTTCCAGCTAGT+TGG 0.498824 1_1:-76446063 Msa0044840:CDS
TCGAAAGGCGGAAGAGGAAG+AGG 0.498977 1_1:-76448649 Msa0044840:CDS
AGAGGAAAGGCTTGCTGATG+AGG 0.500044 1_1:-76448631 Msa0044840:CDS
GGAGAATAGGGAGCTGTTCG+TGG 0.500526 1_1:+76449990 None:intergenic
GATGAACCGGATAGAAGATC+TGG 0.501788 1_1:-76449320 Msa0044840:CDS
GATCTTCTATCCGGTTCATC+GGG 0.503203 1_1:+76449323 None:intergenic
TGGAAGTTCATTCTATGAGT+TGG 0.503678 1_1:+76446214 None:intergenic
GGAGATTCGAAAGGCGGAAG+AGG 0.504692 1_1:-76448655 Msa0044840:CDS
CGGTGATATGTCATTGGACA+TGG 0.505087 1_1:-76449726 Msa0044840:CDS
AATCTGATGATAATGGGATT+GGG 0.505675 1_1:-76448458 Msa0044840:CDS
CCTCCAATGCTTCGTTTGAG+AGG 0.506341 1_1:-76449412 Msa0044840:CDS
GCACTAGCTCTTAGGTCAGC+AGG 0.507575 1_1:+76448576 None:intergenic
ATCCAAATAACGTGTCGGCT+TGG 0.507985 1_1:-76448392 Msa0044840:CDS
AACCAGCTTCAAATTCGAAT+GGG 0.508508 1_1:-76449592 Msa0044840:CDS
AAGCTGTGAACGATCCTGTT+CGG 0.508743 1_1:-76449565 Msa0044840:CDS
CCTCTCAAACGAAGCATTGG+AGG 0.508854 1_1:+76449412 None:intergenic
AGGTTAATGCCTTCAGGGAG+AGG 0.510601 1_1:-76447020 Msa0044840:CDS
GTTTGTGATCGAAACACTCT+CGG 0.513851 1_1:-76448691 Msa0044840:CDS
TGCCTCCGGTGATATGTCAT+TGG 0.514202 1_1:-76449732 Msa0044840:CDS
GTGATTGTTGTCCAACTAGC+TGG 0.516994 1_1:+76446052 None:intergenic
CTTCTATCCGGTTCATCGGG+TGG 0.521257 1_1:+76449326 None:intergenic
GTCGCGACTCGGTAAGGTGT+TGG 0.521513 1_1:+76445783 None:intergenic
GATGATAATGGGATTGGGAA+TGG 0.521877 1_1:-76448453 Msa0044840:CDS
TAGTAGCAAGGACACTGTTA+GGG 0.522100 1_1:+76446556 None:intergenic
CGTGGAAAAGAAAAGAAAGT+AGG 0.526526 1_1:+76450174 None:intergenic
ATGACAATGGTTGATGAAGA+AGG 0.527001 1_1:+76450365 None:intergenic
AAGAGCGGCTGCTGTGTTGG+CGG 0.527336 1_1:+76449963 None:intergenic
CCAATTGAACATGGTTAAAG+TGG 0.527768 1_1:-76446245 Msa0044840:CDS
ACATGAGGCTACTAAGTACA+TGG 0.527915 1_1:+76446005 None:intergenic
GTTCCTCTCAAACGAAGCAT+TGG 0.529720 1_1:+76449409 None:intergenic
AGAGGTTAATGAATATGGTT+CGG 0.532380 1_1:-76448362 Msa0044840:CDS
GCATGGGGCACTTACTACAT+TGG 0.533191 1_1:-76448340 Msa0044840:CDS
ACCCGACCAGATCTTCTATC+CGG 0.536055 1_1:+76449314 None:intergenic
AAAAGAAAGTAGGTATTTGG+TGG 0.536846 1_1:+76450184 None:intergenic
GTTCAGAAGTTGCAGAATGC+CGG 0.537436 1_1:-76448609 Msa0044840:CDS
TGACAATGGTTGATGAAGAA+GGG 0.538861 1_1:+76450366 None:intergenic
TTTCCGATTAGTTGCGACGG+TGG 0.542126 1_1:+76449773 None:intergenic
ATGGAGGAGCTTCAGAATGA+AGG 0.543397 1_1:-76449695 Msa0044840:CDS
CCACCATTACCCGCAGGTGA+TGG 0.544082 1_1:+76449461 None:intergenic
ATCTTGTTATTGGCTTGGGA+AGG 0.545695 1_1:+76449890 None:intergenic
AACTTGCCACTCTTAACCAC+AGG 0.546689 1_1:+76448501 None:intergenic
ACCGGATAGAAGATCTGGTC+GGG 0.546747 1_1:-76449315 Msa0044840:CDS
GTCTTTCTAGGACGATGTGA+GGG 0.547082 1_1:+76450280 None:intergenic
ATGATTCTTGTTCTAATATG+TGG 0.547822 1_1:-76449053 Msa0044840:CDS
CCATCACCTGCGGGTAATGG+TGG 0.548000 1_1:-76449461 Msa0044840:CDS
GGACATGGATTTGGAGATGG+AGG 0.548013 1_1:-76449711 Msa0044840:CDS
TCGGTAAGGTGTTGGATAAG+AGG 0.548420 1_1:+76445791 None:intergenic
ACGACGACGTCTCCGGCCAT+AGG 0.549204 1_1:+76449938 None:intergenic
ACTACGGTAGAAATTATGTA+TGG 0.549810 1_1:+76446530 None:intergenic
CGTCATTCTCCATCACCTGC+GGG 0.550193 1_1:-76449470 Msa0044840:CDS
ACAAATCAGAAGTGAAAATG+AGG 0.550446 1_1:-76448274 Msa0044840:CDS
ACATCAAGAGTGGAAGGTTG+AGG 0.551793 1_1:-76448545 Msa0044840:CDS
AACTCGCGTTGAATCACCGT+GGG 0.553700 1_1:+76449632 None:intergenic
TTTGTGATCGAAACACTCTC+GGG 0.554279 1_1:-76448690 Msa0044840:CDS
GCCTTTCGAATCTCCACCAA+AGG 0.555304 1_1:+76448663 None:intergenic
ACCTTTCCTCCCAATCATCC+CGG 0.555661 1_1:+76449268 None:intergenic
ATGACGACGGTCGTGATTAG+GGG 0.560581 1_1:+76449487 None:intergenic
AAGTGCTCTCCTCTCCCTGA+AGG 0.560903 1_1:+76447011 None:intergenic
AATGAAGGTAACGTCGCTGA+CGG 0.565304 1_1:-76449680 Msa0044840:CDS
GAACCAGCTTCAAATTCGAA+TGG 0.566244 1_1:-76449593 Msa0044840:CDS
CAAATCCGCGTTGAAGAACT+GGG 0.566844 1_1:-76447560 Msa0044840:CDS
CAGTTTCATTGATAACAAGA+AGG 0.567068 1_1:-76446311 Msa0044840:CDS
ACCGTGGGAGATTCCTCCAC+CGG 0.568309 1_1:+76449647 None:intergenic
TTCCTAACATCAAGAGTGGA+AGG 0.569646 1_1:-76448551 Msa0044840:CDS
GGATTGGGAATGGTGGTGGT+GGG 0.572317 1_1:-76448443 Msa0044840:CDS
TCCGGGATGATTGGGAGGAA+AGG 0.573527 1_1:-76449269 Msa0044840:CDS
TTGATAACAAGAAGGAGCAC+TGG 0.574489 1_1:-76446303 Msa0044840:CDS
TAGAATGAACTTCCAAGACA+TGG 0.577011 1_1:-76446206 Msa0044840:CDS
TCACCTGCGGGTAATGGTGG+TGG 0.577751 1_1:-76449458 Msa0044840:CDS
ATTGGACATGGATTTGGAGA+TGG 0.578623 1_1:-76449714 Msa0044840:CDS
AATGAATATGGTTCGGCATG+GGG 0.578953 1_1:-76448355 Msa0044840:CDS
GCCTTTCCTAACATCAAGAG+TGG 0.581351 1_1:-76448555 Msa0044840:CDS
TATGTATGGCCTTAGTAGCA+AGG 0.582004 1_1:+76446544 None:intergenic
GCCTTTGGTGGAGATTCGAA+AGG 0.585486 1_1:-76448664 Msa0044840:CDS
TTCAAGACTATAAACGGTGA+AGG 0.586497 1_1:+76446277 None:intergenic
AAATCTTTCAGAATGTTGCT+AGG 0.587382 1_1:-76448233 Msa0044840:CDS
TCCACTCTTGATGTTAGGAA+AGG 0.591698 1_1:+76448554 None:intergenic
AATAGGGAGCTGTTCGTGGT+CGG 0.592308 1_1:+76449994 None:intergenic
ATGTGAAATTGATGCGACCC+AGG 0.595144 1_1:-76446746 Msa0044840:intron
CAAGAAACAGACCAAAACCT+TGG 0.596695 1_1:+76448821 None:intergenic
TCTTGGTGGGTACTTTGGTG+TGG 0.598050 1_1:-76448803 Msa0044840:CDS
TGACGACGGTCGTGATTAGG+GGG 0.598378 1_1:+76449488 None:intergenic
GACAATGGTTGATGAAGAAG+GGG 0.598617 1_1:+76450367 None:intergenic
AAATCTAGAGAGTCGCGACT+CGG 0.599039 1_1:+76445772 None:intergenic
AAACCTTGGTCACATATTGA+AGG 0.599670 1_1:+76448835 None:intergenic
TGTAATGCATCCATTTGATG+TGG 0.600406 1_1:-76446776 Msa0044840:CDS
TTTCTACCGTAGTCCTGACA+TGG 0.601376 1_1:-76446520 Msa0044840:CDS
GATAATGGGATTGGGAATGG+TGG 0.603168 1_1:-76448450 Msa0044840:CDS
TTTCGAATCTCCACCAAAGG+CGG 0.604367 1_1:+76448666 None:intergenic
GGTCTTTCTAGGACGATGTG+AGG 0.605622 1_1:+76450279 None:intergenic
GAATTTCCTATTGAGAAAGA+GGG 0.608181 1_1:-76448979 Msa0044840:CDS
TAATGGTGGTGGTGATTGCG+AGG 0.608218 1_1:-76449447 Msa0044840:CDS
TTAATGAATATGGTTCGGCA+TGG 0.609094 1_1:-76448357 Msa0044840:CDS
TCCTAAAGTTTAGTTAAACG+TGG 0.609566 1_1:+76450156 None:intergenic
AAAAGCCCTGTGGTTAAGAG+TGG 0.609737 1_1:-76448507 Msa0044840:CDS
TTTCAGAATGTTGCTAGGCG+CGG 0.611025 1_1:-76448228 Msa0044840:CDS
AATCTCCCATGTCAGGACTA+CGG 0.611921 1_1:+76446514 None:intergenic
CGAGCATACTCACCCATTGA+CGG 0.614333 1_1:+76449521 None:intergenic
AGCTGGAAGACGATCAGAAG+TGG 0.616809 1_1:+76446069 None:intergenic
CTCATCACGAACATTGTCGC+CGG 0.617480 1_1:+76449832 None:intergenic
CATGTCCAATGACATATCAC+CGG 0.618141 1_1:+76449727 None:intergenic
AGGCGGAAGAGGAAGAGGAA+AGG 0.622102 1_1:-76448644 Msa0044840:CDS
TCGTCATTCTCCATCACCTG+CGG 0.624845 1_1:-76449471 Msa0044840:CDS
GGAAGACGATCAGAAGTGGT+AGG 0.626699 1_1:+76446073 None:intergenic
CCTCTAGCTTAGCTTTGTGG+CGG 0.631480 1_1:+76449798 None:intergenic
GTAATGCATCCATTTGATGT+GGG 0.631740 1_1:-76446775 Msa0044840:CDS
TGTCGGCTTGGAATATGAAG+AGG 0.635410 1_1:-76448380 Msa0044840:CDS
CATGAGGCTACTAAGTACAT+GGG 0.637736 1_1:+76446006 None:intergenic
CAATCACAAATTGAGTAGAA+GGG 0.641112 1_1:-76446036 Msa0044840:exon
TTGCAGAGAGAGAGTTGTGG+TGG 0.641201 1_1:+76450421 None:intergenic
GCTCTAACATTAATGTCGAG+AGG 0.642384 1_1:+76446100 None:intergenic
AGAATGAACTTCCAAGACAT+GGG 0.642846 1_1:-76446205 Msa0044840:CDS
GTCAGCAGGTATGCTAACAC+CGG 0.644403 1_1:+76448590 None:intergenic
CTTAGTAGCCTCATGTTGCG+TGG 0.644679 1_1:-76445998 Msa0044840:three_prime_UTR
ACATAATGCCACGCAACATG+AGG 0.644692 1_1:+76445990 None:intergenic
AACCGGATAGAAGATCTGGT+CGG 0.644852 1_1:-76449316 Msa0044840:CDS
TTTGGTGGAGATTCGAAAGG+CGG 0.649479 1_1:-76448661 Msa0044840:CDS
AAGAGTGGAAGGTTGAGGAG+TGG 0.649657 1_1:-76448540 Msa0044840:CDS
CCTGCTAAAATGTAACACTT+CGG 0.652616 1_1:+76445964 None:intergenic
TGTCCTTCAATATGTGACCA+AGG 0.652704 1_1:-76448838 Msa0044840:CDS
GCCGGTGGAGGAATCTCCCA+CGG 0.653244 1_1:-76449648 Msa0044840:CDS
TGACGGAAAGTTAACGCCGG+TGG 0.654507 1_1:-76449663 Msa0044840:CDS
TGTTCGGAGAAGACACAGCA+AGG 0.654791 1_1:-76449549 Msa0044840:CDS
TCACCACCACCATTACCCGC+AGG 0.654875 1_1:+76449455 None:intergenic
CCGCCACAAAGCTAAGCTAG+AGG 0.656696 1_1:-76449798 Msa0044840:CDS
GTGAAAATCAACGACGACGG+CGG 0.662140 1_1:-76449917 Msa0044840:CDS
GCTGAATCCAAATAACGTGT+CGG 0.662469 1_1:-76448397 Msa0044840:CDS
TTCTACCGTAGTCCTGACAT+GGG 0.663692 1_1:-76446519 Msa0044840:CDS
TAATGTCGAGAGGCATGAGA+CGG 0.670724 1_1:+76446110 None:intergenic
TCTTTCTAGGACGATGTGAG+GGG 0.678504 1_1:+76450281 None:intergenic
GTGGTTGGTGAAAACTCTAG+TGG 0.683918 1_1:-76448784 Msa0044840:CDS
GGATCACGACCAATTGAACA+TGG 0.685709 1_1:-76446254 Msa0044840:CDS
ATCGTATCTCAGAAATACGG+TGG 0.688391 1_1:+76446596 None:intergenic
TAAAACGCATTAAGTCCTCA+GGG 0.688495 1_1:+76447650 None:intergenic
GTCCAATGACATATCACCGG+AGG 0.689612 1_1:+76449730 None:intergenic
TCGATGAAGTTTGTTCACTG+CGG 0.690334 1_1:+76446963 None:intergenic
TGGGAGAAAGATATATCAGG+AGG 0.691880 1_1:-76446186 Msa0044840:CDS
CGCTGACGGAAAGTTAACGC+CGG 0.693881 1_1:-76449666 Msa0044840:CDS
ACTTGCCACTCTTAACCACA+GGG 0.694699 1_1:+76448502 None:intergenic
GGATTGCAGAGAGAGAGTTG+TGG 0.697383 1_1:+76450418 None:intergenic
CTCCGGCCATAGGAAAAGAG+CGG 0.698377 1_1:+76449948 None:intergenic
TTGTGATCGAAACACTCTCG+GGG 0.699008 1_1:-76448689 Msa0044840:CDS
AACGATAATGATGATGACAA+TGG 0.699365 1_1:+76450352 None:intergenic
AGAGTCTTATCCCTCAACAA+AGG 0.699553 1_1:+76449107 None:intergenic
TGTTGAGGGATAAGACTCTG+TGG 0.700670 1_1:-76449103 Msa0044840:CDS
ATGAGGCTACTAAGTACATG+GGG 0.703671 1_1:+76446007 None:intergenic
GTCGTGAAAATCAACGACGA+CGG 0.711455 1_1:-76449920 Msa0044840:CDS
CAACTCGCGTTGAATCACCG+TGG 0.722386 1_1:+76449631 None:intergenic
CAGGTGATGGAGAATGACGA+CGG 0.731799 1_1:+76449474 None:intergenic
CTGCAGGTTTATATACCCTG+AGG 0.739699 1_1:-76447665 Msa0044840:intron
ATCCGCGTTGAAGAACTGGG+TGG 0.755991 1_1:-76447557 Msa0044840:intron
TACCACCCAGTTCTTCAACG+CGG 0.756191 1_1:+76447555 None:intergenic
AATGCTTCAGAAAAGCCCTG+TGG 0.795880 1_1:-76448517 Msa0044840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTGATTTTTTAGAATTGAAA+GGG + chr1_1:76445913-76445932 None:intergenic 15.0%
!!! TTTGATTTTTTAGAATTGAA+AGG + chr1_1:76445914-76445933 None:intergenic 15.0%
!!! TTGAGTTTGATTTTAATTAT+TGG - chr1_1:76447013-76447032 Msa0044840:CDS 15.0%
!! AAAATTCAAAAGACATAATT+AGG - chr1_1:76448158-76448177 Msa0044840:intron 15.0%
!! GTGTATATAGAAAAATTTCT+TGG - chr1_1:76445958-76445977 Msa0044840:three_prime_UTR 20.0%
!! TATGTCATATAAATCATGAT+TGG + chr1_1:76447998-76448017 None:intergenic 20.0%
!! AAAAATAAACCAAATAGAAG+GGG + chr1_1:76448191-76448210 None:intergenic 20.0%
!! GAAAAATAAACCAAATAGAA+GGG + chr1_1:76448192-76448211 None:intergenic 20.0%
!! TGAAAAATAAACCAAATAGA+AGG + chr1_1:76448193-76448212 None:intergenic 20.0%
!! AAAACCATAAATCTATTTGA+AGG - chr1_1:76448561-76448580 Msa0044840:CDS 20.0%
!! AAACAATACTAAAGAAGAAA+AGG + chr1_1:76448684-76448703 None:intergenic 20.0%
!! TTTATGTAAAGAGTTTCTTA+TGG - chr1_1:76450233-76450252 Msa0044840:five_prime_UTR 20.0%
!! ATAAATCAAAGAGTTTCTAT+TGG - chr1_1:76450304-76450323 Msa0044840:five_prime_UTR 20.0%
! AAGAAAAGAAAGTAGGTATT+TGG + chr1_1:76445990-76446009 None:intergenic 25.0%
!!! TTTTAATAGTTTGCATCACA+GGG + chr1_1:76446094-76446113 None:intergenic 25.0%
!!! TTTTTAATAGTTTGCATCAC+AGG + chr1_1:76446095-76446114 None:intergenic 25.0%
! TAAAACTAAGTCCAGATTAA+TGG - chr1_1:76446817-76446836 Msa0044840:CDS 25.0%
! ATGATTCTTGTTCTAATATG+TGG - chr1_1:76447115-76447134 Msa0044840:intron 25.0%
! TATGAAGAGGTTAATGAATA+TGG - chr1_1:76447801-76447820 Msa0044840:intron 25.0%
! TAATACCAAGAGAAAGAAAT+AGG + chr1_1:76448124-76448143 None:intergenic 25.0%
! GAGAAAGGATTAATAAACAA+TGG + chr1_1:76448451-76448470 None:intergenic 25.0%
! AAATAAAATGACAGAGAGAA+AGG + chr1_1:76448466-76448485 None:intergenic 25.0%
! AGGAAACATATGAAATTACA+CGG + chr1_1:76448664-76448683 None:intergenic 25.0%
! TAATACTCCTATACTACTAT+GGG + chr1_1:76448881-76448900 None:intergenic 25.0%
! AAACAAAATCAAAAGTAACC+AGG + chr1_1:76449051-76449070 None:intergenic 25.0%
!! TATTGTTCATTTTATTGTCC+AGG - chr1_1:76449128-76449147 Msa0044840:CDS 25.0%
! TAGAGATATAAACATTACCT+GGG + chr1_1:76449442-76449461 None:intergenic 25.0%
! ATTATCGTATCTCAGAAATA+CGG + chr1_1:76449578-76449597 None:intergenic 25.0%
! CAAATATGCAAAGATAATGA+AGG + chr1_1:76449778-76449797 None:intergenic 25.0%
! CATTATCTTTGCATATTTGT+TGG - chr1_1:76449779-76449798 Msa0044840:CDS 25.0%
!! TTGTAGTCAATAACGATTTT+AGG + chr1_1:76449835-76449854 None:intergenic 25.0%
! AACGATAATGATGATGACAA+TGG + chr1_1:76445819-76445838 None:intergenic 30.0%
AAAAGAAAGTAGGTATTTGG+TGG + chr1_1:76445987-76446006 None:intergenic 30.0%
TCCACGTTTAACTAAACTTT+AGG - chr1_1:76446011-76446030 Msa0044840:three_prime_UTR 30.0%
TCCTAAAGTTTAGTTAAACG+TGG + chr1_1:76446015-76446034 None:intergenic 30.0%
! TTCTCTCCAAATCTTGTTAT+TGG + chr1_1:76446291-76446310 None:intergenic 30.0%
! TGATGAAGATGATCCTTTTA+TGG - chr1_1:76446928-76446947 Msa0044840:CDS 30.0%
! TGTGTTTTCTTATACTCATC+TGG + chr1_1:76446965-76446984 None:intergenic 30.0%
AGAAAACACATTTCAGTCTT+TGG - chr1_1:76446975-76446994 Msa0044840:CDS 30.0%
TGTTCTAATATGTGGTAGAT+TGG - chr1_1:76447123-76447142 Msa0044840:intron 30.0%
! TTGCTGTGTTTTGTATTGAA+AGG - chr1_1:76447167-76447186 Msa0044840:intron 30.0%
GAATTTCCTATTGAGAAAGA+GGG - chr1_1:76447189-76447208 Msa0044840:intron 30.0%
!!! AGGGTTCTTTATTTTGTGTA+TGG - chr1_1:76447208-76447227 Msa0044840:intron 30.0%
!!! TTTATTTTGTGTATGGTGTC+AGG - chr1_1:76447215-76447234 Msa0044840:intron 30.0%
TGCAAAATTGTGTTTGGTTA+GGG - chr1_1:76447245-76447264 Msa0044840:intron 30.0%
ATGTGAGTACATACTTTGAT+AGG - chr1_1:76447431-76447450 Msa0044840:intron 30.0%
TCCAAGAAATCTGATGATAA+TGG - chr1_1:76447703-76447722 Msa0044840:intron 30.0%
CCAAGAAATCTGATGATAAT+GGG - chr1_1:76447704-76447723 Msa0044840:intron 30.0%
!! AAATCTGATGATAATGGGAT+TGG - chr1_1:76447709-76447728 Msa0044840:intron 30.0%
!! AATCTGATGATAATGGGATT+GGG - chr1_1:76447710-76447729 Msa0044840:intron 30.0%
AGAGGTTAATGAATATGGTT+CGG - chr1_1:76447806-76447825 Msa0044840:intron 30.0%
!! ATTTTCACTTCTGATTTGTG+TGG + chr1_1:76447893-76447912 None:intergenic 30.0%
ACAAATCAGAAGTGAAAATG+AGG - chr1_1:76447894-76447913 Msa0044840:intron 30.0%
AAATCTTTCAGAATGTTGCT+AGG - chr1_1:76447935-76447954 Msa0044840:intron 30.0%
AGTATACAGTCTTAAATGTC+AGG + chr1_1:76448041-76448060 None:intergenic 30.0%
! TAACTCCTATTTCTTTCTCT+TGG - chr1_1:76448116-76448135 Msa0044840:intron 30.0%
CTTTCTCTTGGTATTATGTA+TGG - chr1_1:76448128-76448147 Msa0044840:intron 30.0%
TAGTGTGACCAATAAAGAAA+AGG - chr1_1:76448378-76448397 Msa0044840:CDS 30.0%
! GACAGAAACCTTTTCTTTAT+TGG + chr1_1:76448389-76448408 None:intergenic 30.0%
TGCATGTAATAAATGACAAG+TGG - chr1_1:76448424-76448443 Msa0044840:CDS 30.0%
CTTTAGTATTGTTTGTCTGA+TGG - chr1_1:76448690-76448709 Msa0044840:CDS 30.0%
! TCTGATGGAATATCTTTTAG+AGG - chr1_1:76448705-76448724 Msa0044840:CDS 30.0%
! TGTGCATCACATTTTCATTA+TGG - chr1_1:76448752-76448771 Msa0044840:CDS 30.0%
AGATAAACCCATAGTAGTAT+AGG - chr1_1:76448871-76448890 Msa0044840:CDS 30.0%
GTAATACTCCTATACTACTA+TGG + chr1_1:76448882-76448901 None:intergenic 30.0%
TAGTTGCATCTGATTAAACT+TGG - chr1_1:76448930-76448949 Msa0044840:CDS 30.0%
CCAAATAACCAGTATGATAA+TGG + chr1_1:76449250-76449269 None:intergenic 30.0%
! CCATTATCATACTGGTTATT+TGG - chr1_1:76449247-76449266 Msa0044840:CDS 30.0%
GCTCACAAAAAGAAGAAATT+TGG + chr1_1:76449298-76449317 None:intergenic 30.0%
GTCTTGGTTGCATTTATATT+CGG - chr1_1:76449327-76449346 Msa0044840:CDS 30.0%
CTAGAGATATAAACATTACC+TGG + chr1_1:76449443-76449462 None:intergenic 30.0%
CAGGTAATGTTTATATCTCT+AGG - chr1_1:76449441-76449460 Msa0044840:CDS 30.0%
AAATCACAAGCAAAAATGAG+GGG + chr1_1:76449521-76449540 None:intergenic 30.0%
GAAATCACAAGCAAAAATGA+GGG + chr1_1:76449522-76449541 None:intergenic 30.0%
TGAAATCACAAGCAAAAATG+AGG + chr1_1:76449523-76449542 None:intergenic 30.0%
! TTTTTGCTTGTGATTTCAGA+TGG - chr1_1:76449525-76449544 Msa0044840:CDS 30.0%
ACTACGGTAGAAATTATGTA+TGG + chr1_1:76449641-76449660 None:intergenic 30.0%
! TTCATGAGTGAAATCTTTTC+AGG + chr1_1:76449712-76449731 None:intergenic 30.0%
! CAGTTTCATTGATAACAAGA+AGG - chr1_1:76449857-76449876 Msa0044840:CDS 30.0%
TGATCCTTCAAGACTATAAA+CGG + chr1_1:76449900-76449919 None:intergenic 30.0%
!!! AAGAGTTGATGAAGATTTTC+AGG - chr1_1:76450018-76450037 Msa0044840:CDS 30.0%
!!! AGAGTTGATGAAGATTTTCA+GGG - chr1_1:76450019-76450038 Msa0044840:CDS 30.0%
ACAATCACAAATTGAGTAGA+AGG - chr1_1:76450131-76450150 Msa0044840:five_prime_UTR 30.0%
CAATCACAAATTGAGTAGAA+GGG - chr1_1:76450132-76450151 Msa0044840:five_prime_UTR 30.0%
!! GATTAGCTTGATATCTACTA+AGG - chr1_1:76450267-76450286 Msa0044840:five_prime_UTR 30.0%
!! TGACAATGGTTGATGAAGAA+GGG + chr1_1:76445805-76445824 None:intergenic 35.0%
!! ATGACAATGGTTGATGAAGA+AGG + chr1_1:76445806-76445825 None:intergenic 35.0%
AGAATTGAAAGGGTCTTTCT+AGG + chr1_1:76445903-76445922 None:intergenic 35.0%
CGTGGAAAAGAAAAGAAAGT+AGG + chr1_1:76445997-76446016 None:intergenic 35.0%
! CTGAGAAGCATAAGATTTGA+AGG + chr1_1:76446120-76446139 None:intergenic 35.0%
!! CCAAATCTTGTTATTGGCTT+GGG + chr1_1:76446285-76446304 None:intergenic 35.0%
!! TCCAAATCTTGTTATTGGCT+TGG + chr1_1:76446286-76446305 None:intergenic 35.0%
!!! TACGATTTTTGGAATGACAC+CGG - chr1_1:76446317-76446336 Msa0044840:intron 35.0%
!! AATTTTCCGATTAGTTGCGA+CGG + chr1_1:76446401-76446420 None:intergenic 35.0%
TATGTCATTGGACATGGATT+TGG - chr1_1:76446448-76446467 Msa0044840:CDS 35.0%
AACCAGCTTCAAATTCGAAT+GGG - chr1_1:76446576-76446595 Msa0044840:CDS 35.0%
! TTGATTTTCTCTGCATTGAG+AGG + chr1_1:76446784-76446803 None:intergenic 35.0%
! AGATGATCCTTTTATGGAAG+AGG - chr1_1:76446934-76446953 Msa0044840:CDS 35.0%
GGAAAATCCTCTTCCATAAA+AGG + chr1_1:76446944-76446963 None:intergenic 35.0%
GTCTTTGGATTCTTCTTGAA+TGG - chr1_1:76446990-76447009 Msa0044840:CDS 35.0%
TTTGAGTGTTCCTTTGTTGA+GGG - chr1_1:76447051-76447070 Msa0044840:intron 35.0%
!!! GCAGCTTAAGTTTTGGAAAT+GGG - chr1_1:76447087-76447106 Msa0044840:intron 35.0%
!! TGGTAGATTGGTTTCTGATT+GGG - chr1_1:76447135-76447154 Msa0044840:intron 35.0%
TGGTTTCTGATTGGGTTATT+AGG - chr1_1:76447143-76447162 Msa0044840:intron 35.0%
GGAATTTCCTATTGAGAAAG+AGG - chr1_1:76447188-76447207 Msa0044840:intron 35.0%
AAAGAACCCTCTTTCTCAAT+AGG + chr1_1:76447198-76447217 None:intergenic 35.0%
AAGCTGTGCAAAATTGTGTT+TGG - chr1_1:76447239-76447258 Msa0044840:intron 35.0%
GTGCAAAATTGTGTTTGGTT+AGG - chr1_1:76447244-76447263 Msa0044840:intron 35.0%
AAACCTTGGTCACATATTGA+AGG + chr1_1:76447336-76447355 None:intergenic 35.0%
! TCAATATGTGACCAAGGTTT+TGG - chr1_1:76447336-76447355 Msa0044840:intron 35.0%
TCATCAGATTTCTTGGAAAG+TGG + chr1_1:76447700-76447719 None:intergenic 35.0%
CCCATTATCATCAGATTTCT+TGG + chr1_1:76447707-76447726 None:intergenic 35.0%
! TTAATGAATATGGTTCGGCA+TGG - chr1_1:76447811-76447830 Msa0044840:intron 35.0%
! TAATGAATATGGTTCGGCAT+GGG - chr1_1:76447812-76447831 Msa0044840:intron 35.0%
GGTGAGTAAGACTAGATTAA+TGG + chr1_1:76447977-76447996 None:intergenic 35.0%
ACAGTCTTAAATGTCAGGTA+TGG + chr1_1:76448036-76448055 None:intergenic 35.0%
AAACATGACCAAATCACCTT+AGG - chr1_1:76448249-76448268 Msa0044840:CDS 35.0%
AAAACTTGCCTAAGGTGATT+TGG + chr1_1:76448260-76448279 None:intergenic 35.0%
! AGAGCATTAAAACTTGCCTA+AGG + chr1_1:76448268-76448287 None:intergenic 35.0%
CTCAATTGATTGTGTCACAT+AGG + chr1_1:76448354-76448373 None:intergenic 35.0%
TAAAACGCATTAAGTCCTCA+GGG + chr1_1:76448521-76448540 None:intergenic 35.0%
ATAAAACGCATTAAGTCCTC+AGG + chr1_1:76448522-76448541 None:intergenic 35.0%
CGCTCCTTCAAATAGATTTA+TGG + chr1_1:76448568-76448587 None:intergenic 35.0%
TGAAAATGTGATGCACATCA+AGG + chr1_1:76448749-76448768 None:intergenic 35.0%
TACAACAAGTGAATAACGTC+AGG + chr1_1:76448781-76448800 None:intergenic 35.0%
!! AATCAGATGCAACTAGTCTT+AGG + chr1_1:76448925-76448944 None:intergenic 35.0%
CTTAGTTGCCATTATCATAC+TGG - chr1_1:76449239-76449258 Msa0044840:CDS 35.0%
!! GGTTATTTGGCTCTTGATAT+TGG - chr1_1:76449260-76449279 Msa0044840:CDS 35.0%
TGTAATGCATCCATTTGATG+TGG - chr1_1:76449392-76449411 Msa0044840:CDS 35.0%
GTAATGCATCCATTTGATGT+GGG - chr1_1:76449393-76449412 Msa0044840:CDS 35.0%
!!! TGAGTGAAATCTTTTCAGGT+GGG + chr1_1:76449708-76449727 None:intergenic 35.0%
!! ATGAGTGAAATCTTTTCAGG+TGG + chr1_1:76449709-76449728 None:intergenic 35.0%
TTCAAGACTATAAACGGTGA+AGG + chr1_1:76449894-76449913 None:intergenic 35.0%
! TTCACCGTTTATAGTCTTGA+AGG - chr1_1:76449893-76449912 Msa0044840:CDS 35.0%
CCACTTTAACCATGTTCAAT+TGG + chr1_1:76449926-76449945 None:intergenic 35.0%
CCAATTGAACATGGTTAAAG+TGG - chr1_1:76449923-76449942 Msa0044840:CDS 35.0%
TGGAAGTTCATTCTATGAGT+TGG + chr1_1:76449957-76449976 None:intergenic 35.0%
TAGAATGAACTTCCAAGACA+TGG - chr1_1:76449962-76449981 Msa0044840:CDS 35.0%
AGAATGAACTTCCAAGACAT+GGG - chr1_1:76449963-76449982 Msa0044840:CDS 35.0%
TATATCTTTCTCCCATGTCT+TGG + chr1_1:76449977-76449996 None:intergenic 35.0%
ACATGGGAGAAAGATATATC+AGG - chr1_1:76449979-76449998 Msa0044840:CDS 35.0%
CCTGCTAAAATGTAACACTT+CGG + chr1_1:76450207-76450226 None:intergenic 35.0%
!! CGAAGTGTTACATTTTAGCA+GGG - chr1_1:76450205-76450224 Msa0044840:five_prime_UTR 35.0%
!! GACAATGGTTGATGAAGAAG+GGG + chr1_1:76445804-76445823 None:intergenic 40.0%
! TAGTTTGCATCACAGGGTTA+GGG + chr1_1:76446088-76446107 None:intergenic 40.0%
! ATAGTTTGCATCACAGGGTT+AGG + chr1_1:76446089-76446108 None:intergenic 40.0%
!! ATCTTGTTATTGGCTTGGGA+AGG + chr1_1:76446281-76446300 None:intergenic 40.0%
CCCAAGCCAATAACAAGATT+TGG - chr1_1:76446282-76446301 Msa0044840:CDS 40.0%
! GAGAATCCAGCTACGATTTT+TGG - chr1_1:76446306-76446325 Msa0044840:CDS 40.0%
GTCATTCCAAAAATCGTAGC+TGG + chr1_1:76446315-76446334 None:intergenic 40.0%
CATGTCCAATGACATATCAC+CGG + chr1_1:76446444-76446463 None:intergenic 40.0%
ATTGGACATGGATTTGGAGA+TGG - chr1_1:76446454-76446473 Msa0044840:CDS 40.0%
! CGAGTTGAAAGTTAGTTTCG+AGG - chr1_1:76446553-76446572 Msa0044840:CDS 40.0%
GAACCAGCTTCAAATTCGAA+TGG - chr1_1:76446575-76446594 Msa0044840:CDS 40.0%
! ATCCCATTCGAATTTGAAGC+TGG + chr1_1:76446581-76446600 None:intergenic 40.0%
AGATCTTCTATCCGGTTCAT+CGG + chr1_1:76446849-76446868 None:intergenic 40.0%
! AAATCGAGTCAGCTTTTGTC+CGG - chr1_1:76446881-76446900 Msa0044840:CDS 40.0%
CTTTGAGTGTTCCTTTGTTG+AGG - chr1_1:76447050-76447069 Msa0044840:intron 40.0%
! AGAGTCTTATCCCTCAACAA+AGG + chr1_1:76447064-76447083 None:intergenic 40.0%
!!! GGCAGCTTAAGTTTTGGAAA+TGG - chr1_1:76447086-76447105 Msa0044840:intron 40.0%
!! GTGGTAGATTGGTTTCTGAT+TGG - chr1_1:76447134-76447153 Msa0044840:intron 40.0%
!!! TAGGGCTTGTTTTGATTGCA+TGG - chr1_1:76447263-76447282 Msa0044840:intron 40.0%
TGTCCTTCAATATGTGACCA+AGG - chr1_1:76447330-76447349 Msa0044840:intron 40.0%
CAAGAAACAGACCAAAACCT+TGG + chr1_1:76447350-76447369 None:intergenic 40.0%
!! CAAGGTTTTGGTCTGTTTCT+TGG - chr1_1:76447348-76447367 Msa0044840:intron 40.0%
!! GTTTTGGTCTGTTTCTTGGT+GGG - chr1_1:76447352-76447371 Msa0044840:intron 40.0%
GGTGAAAACTCTAGTGGTTA+AGG - chr1_1:76447390-76447409 Msa0044840:intron 40.0%
GTTTGTGATCGAAACACTCT+CGG - chr1_1:76447477-76447496 Msa0044840:intron 40.0%
TTTGTGATCGAAACACTCTC+GGG - chr1_1:76447478-76447497 Msa0044840:intron 40.0%
TCCACTCTTGATGTTAGGAA+AGG + chr1_1:76447617-76447636 None:intergenic 40.0%
TTCCTAACATCAAGAGTGGA+AGG - chr1_1:76447617-76447636 Msa0044840:CDS 40.0%
AACCTTCCACTCTTGATGTT+AGG + chr1_1:76447622-76447641 None:intergenic 40.0%
!! GATGATAATGGGATTGGGAA+TGG - chr1_1:76447715-76447734 Msa0044840:intron 40.0%
GCTGAATCCAAATAACGTGT+CGG - chr1_1:76447771-76447790 Msa0044840:intron 40.0%
! AATGAATATGGTTCGGCATG+GGG - chr1_1:76447813-76447832 Msa0044840:intron 40.0%
!! AAGTTTGTTCACTGCGGTTT+TGG + chr1_1:76449202-76449221 None:intergenic 40.0%
! TCGATGAAGTTTGTTCACTG+CGG + chr1_1:76449208-76449227 None:intergenic 40.0%
CATCTATCTCCCACATCAAA+TGG + chr1_1:76449405-76449424 None:intergenic 40.0%
ATCGTATCTCAGAAATACGG+TGG + chr1_1:76449575-76449594 None:intergenic 40.0%
TAGTAGCAAGGACACTGTTA+GGG + chr1_1:76449615-76449634 None:intergenic 40.0%
TTAGTAGCAAGGACACTGTT+AGG + chr1_1:76449616-76449635 None:intergenic 40.0%
TAACAGTGTCCTTGCTACTA+AGG - chr1_1:76449615-76449634 Msa0044840:CDS 40.0%
! TATGTATGGCCTTAGTAGCA+AGG + chr1_1:76449627-76449646 None:intergenic 40.0%
TCAATAGAATCTCCCATGTC+AGG + chr1_1:76449664-76449683 None:intergenic 40.0%
!!! GAGTGAAATCTTTTCAGGTG+GGG + chr1_1:76449707-76449726 None:intergenic 40.0%
! TTGATAACAAGAAGGAGCAC+TGG - chr1_1:76449865-76449884 Msa0044840:CDS 40.0%
TGGGAGAAAGATATATCAGG+AGG - chr1_1:76449982-76450001 Msa0044840:CDS 40.0%
GCTCTAACATTAATGTCGAG+AGG + chr1_1:76450071-76450090 None:intergenic 40.0%
ATGAGGCTACTAAGTACATG+GGG + chr1_1:76450164-76450183 None:intergenic 40.0%
CATGAGGCTACTAAGTACAT+GGG + chr1_1:76450165-76450184 None:intergenic 40.0%
ACATGAGGCTACTAAGTACA+TGG + chr1_1:76450166-76450185 None:intergenic 40.0%
!! CCGAAGTGTTACATTTTAGC+AGG - chr1_1:76450204-76450223 Msa0044840:five_prime_UTR 40.0%
!! GTGTTACATTTTAGCAGGGT+AGG - chr1_1:76450209-76450228 Msa0044840:five_prime_UTR 40.0%
CGCGGTCAAACTGTTATATA+TGG + chr1_1:76450425-76450444 None:intergenic 40.0%
!! TCTTTCTAGGACGATGTGAG+GGG + chr1_1:76445890-76445909 None:intergenic 45.0%
!! GTCTTTCTAGGACGATGTGA+GGG + chr1_1:76445891-76445910 None:intergenic 45.0%
GTCGTGAAAATCAACGACGA+CGG - chr1_1:76446248-76446267 Msa0044840:CDS 45.0%
!! GATCCTCTAGCTTAGCTTTG+TGG + chr1_1:76446376-76446395 None:intergenic 45.0%
CGGTGATATGTCATTGGACA+TGG - chr1_1:76446442-76446461 Msa0044840:intron 45.0%
ATGGAGGAGCTTCAGAATGA+AGG - chr1_1:76446473-76446492 Msa0044840:CDS 45.0%
AATGAAGGTAACGTCGCTGA+CGG - chr1_1:76446488-76446507 Msa0044840:CDS 45.0%
AAGCTGTGAACGATCCTGTT+CGG - chr1_1:76446603-76446622 Msa0044840:CDS 45.0%
AATGACGACGGTCGTGATTA+GGG + chr1_1:76446685-76446704 None:intergenic 45.0%
GTTCCTCTCAAACGAAGCAT+TGG + chr1_1:76446762-76446781 None:intergenic 45.0%
GATCTTCTATCCGGTTCATC+GGG + chr1_1:76446848-76446867 None:intergenic 45.0%
GATGAACCGGATAGAAGATC+TGG - chr1_1:76446848-76446867 Msa0044840:CDS 45.0%
AACCGGATAGAAGATCTGGT+CGG - chr1_1:76446852-76446871 Msa0044840:CDS 45.0%
! AATCGAGTCAGCTTTTGTCC+GGG - chr1_1:76446882-76446901 Msa0044840:CDS 45.0%
! AGCTTTTGTCCGGGATGATT+GGG - chr1_1:76446891-76446910 Msa0044840:CDS 45.0%
TGTTGAGGGATAAGACTCTG+TGG - chr1_1:76447065-76447084 Msa0044840:intron 45.0%
! CTCTGTGGCAGCTTAAGTTT+TGG - chr1_1:76447080-76447099 Msa0044840:intron 45.0%
!! GGTTTTGGTCTGTTTCTTGG+TGG - chr1_1:76447351-76447370 Msa0044840:intron 45.0%
! CTGTTTCTTGGTGGGTACTT+TGG - chr1_1:76447360-76447379 Msa0044840:intron 45.0%
!! GTGGTTGGTGAAAACTCTAG+TGG - chr1_1:76447384-76447403 Msa0044840:intron 45.0%
TTGTGATCGAAACACTCTCG+GGG - chr1_1:76447479-76447498 Msa0044840:intron 45.0%
TTTCGAATCTCCACCAAAGG+CGG + chr1_1:76447505-76447524 None:intergenic 45.0%
TTTGGTGGAGATTCGAAAGG+CGG - chr1_1:76447507-76447526 Msa0044840:intron 45.0%
GTTCAGAAGTTGCAGAATGC+CGG - chr1_1:76447559-76447578 Msa0044840:CDS 45.0%
!! TAGGAAAGGCACTAGCTCTT+AGG + chr1_1:76447603-76447622 None:intergenic 45.0%
GCCTTTCCTAACATCAAGAG+TGG - chr1_1:76447613-76447632 Msa0044840:CDS 45.0%
ACATCAAGAGTGGAAGGTTG+AGG - chr1_1:76447623-76447642 Msa0044840:CDS 45.0%
AATGCTTCAGAAAAGCCCTG+TGG - chr1_1:76447651-76447670 Msa0044840:CDS 45.0%
AAAAGCCCTGTGGTTAAGAG+TGG - chr1_1:76447661-76447680 Msa0044840:CDS 45.0%
ACTTGCCACTCTTAACCACA+GGG + chr1_1:76447669-76447688 None:intergenic 45.0%
AACTTGCCACTCTTAACCAC+AGG + chr1_1:76447670-76447689 None:intergenic 45.0%
!! GATAATGGGATTGGGAATGG+TGG - chr1_1:76447718-76447737 Msa0044840:intron 45.0%
!! ATCCAAATAACGTGTCGGCT+TGG - chr1_1:76447776-76447795 Msa0044840:intron 45.0%
TTCCAAGCCGACACGTTATT+TGG + chr1_1:76447781-76447800 None:intergenic 45.0%
!! TGTCGGCTTGGAATATGAAG+AGG - chr1_1:76447788-76447807 Msa0044840:intron 45.0%
TTTCAGAATGTTGCTAGGCG+CGG - chr1_1:76447940-76447959 Msa0044840:intron 45.0%
GGATGTCTTCCCCTTCTATT+TGG - chr1_1:76448179-76448198 Msa0044840:intron 45.0%
AAACCTGCAGTGCAGCAAAA+AGG + chr1_1:76448493-76448512 None:intergenic 45.0%
CTGCAGGTTTATATACCCTG+AGG - chr1_1:76448503-76448522 Msa0044840:CDS 45.0%
! GCGTTTTATGCGAGAAGATG+AGG - chr1_1:76448533-76448552 Msa0044840:CDS 45.0%
!! TTTGAAGGAGCGTCTGATTC+TGG - chr1_1:76448576-76448595 Msa0044840:CDS 45.0%
!! TTGAAGGAGCGTCTGATTCT+GGG - chr1_1:76448577-76448596 Msa0044840:CDS 45.0%
CAAATCCGCGTTGAAGAACT+GGG - chr1_1:76448608-76448627 Msa0044840:CDS 45.0%
ACACACACACACACACACTA+CGG + chr1_1:76448816-76448835 None:intergenic 45.0%
!! GATGCAACTAGTCTTAGGCA+GGG + chr1_1:76448920-76448939 None:intergenic 45.0%
!! AGATGCAACTAGTCTTAGGC+AGG + chr1_1:76448921-76448940 None:intergenic 45.0%
! ATCAAGAGTGTATTCGTGCC+TGG - chr1_1:76449030-76449049 Msa0044840:CDS 45.0%
TTGTCCAGGTTAATGCCTTC+AGG - chr1_1:76449142-76449161 Msa0044840:CDS 45.0%
TGTCCAGGTTAATGCCTTCA+GGG - chr1_1:76449143-76449162 Msa0044840:CDS 45.0%
TGTGAGCTCACAACTTGTCT+TGG - chr1_1:76449311-76449330 Msa0044840:CDS 45.0%
ATGTGAAATTGATGCGACCC+AGG - chr1_1:76449422-76449441 Msa0044840:CDS 45.0%
ACAAGCAAAAATGAGGGGAG+GGG + chr1_1:76449516-76449535 None:intergenic 45.0%
CACAAGCAAAAATGAGGGGA+GGG + chr1_1:76449517-76449536 None:intergenic 45.0%
TCACAAGCAAAAATGAGGGG+AGG + chr1_1:76449518-76449537 None:intergenic 45.0%
TTTCTACCGTAGTCCTGACA+TGG - chr1_1:76449648-76449667 Msa0044840:CDS 45.0%
TTCTACCGTAGTCCTGACAT+GGG - chr1_1:76449649-76449668 Msa0044840:CDS 45.0%
AATCTCCCATGTCAGGACTA+CGG + chr1_1:76449657-76449676 None:intergenic 45.0%
GGATCACGACCAATTGAACA+TGG - chr1_1:76449914-76449933 Msa0044840:CDS 45.0%
ACATGGTTAAAGTGGCGATC+TGG - chr1_1:76449931-76449950 Msa0044840:CDS 45.0%
! TAATGTCGAGAGGCATGAGA+CGG + chr1_1:76450061-76450080 None:intergenic 45.0%
GTGATTGTTGTCCAACTAGC+TGG + chr1_1:76450119-76450138 None:intergenic 45.0%
ACATAATGCCACGCAACATG+AGG + chr1_1:76450181-76450200 None:intergenic 45.0%
!! TCGGTAAGGTGTTGGATAAG+AGG + chr1_1:76450380-76450399 None:intergenic 45.0%
AAATCTAGAGAGTCGCGACT+CGG + chr1_1:76450399-76450418 None:intergenic 45.0%
!!! TAATGTTTTTAAATAATTTA+TGG + chr1_1:76445774-76445793 None:intergenic 5.0%
TTGCAGAGAGAGAGTTGTGG+TGG + chr1_1:76445750-76445769 None:intergenic 50.0%
GGATTGCAGAGAGAGAGTTG+TGG + chr1_1:76445753-76445772 None:intergenic 50.0%
!! GGTCTTTCTAGGACGATGTG+AGG + chr1_1:76445892-76445911 None:intergenic 50.0%
AATAGGGAGCTGTTCGTGGT+CGG + chr1_1:76446177-76446196 None:intergenic 50.0%
! GATTTTCACGACGACGTCTC+CGG + chr1_1:76446240-76446259 None:intergenic 50.0%
GTGAAAATCAACGACGACGG+CGG - chr1_1:76446251-76446270 Msa0044840:CDS 50.0%
CTCATCACGAACATTGTCGC+CGG + chr1_1:76446339-76446358 None:intergenic 50.0%
!! CCTCTAGCTTAGCTTTGTGG+CGG + chr1_1:76446373-76446392 None:intergenic 50.0%
GATCCACCGTCGCAACTAAT+CGG - chr1_1:76446392-76446411 Msa0044840:intron 50.0%
! TTTCCGATTAGTTGCGACGG+TGG + chr1_1:76446398-76446417 None:intergenic 50.0%
CTTCATAAACAGCGTGCCTC+CGG - chr1_1:76446422-76446441 Msa0044840:intron 50.0%
TGCCTCCGGTGATATGTCAT+TGG - chr1_1:76446436-76446455 Msa0044840:intron 50.0%
GTCCAATGACATATCACCGG+AGG + chr1_1:76446441-76446460 None:intergenic 50.0%
GGACATGGATTTGGAGATGG+AGG - chr1_1:76446457-76446476 Msa0044840:CDS 50.0%
AACTCGCGTTGAATCACCGT+GGG + chr1_1:76446539-76446558 None:intergenic 50.0%
TTGCTGTGTCTTCTCCGAAC+AGG + chr1_1:76446620-76446639 None:intergenic 50.0%
TGTTCGGAGAAGACACAGCA+AGG - chr1_1:76446619-76446638 Msa0044840:CDS 50.0%
AGCAAGGATTCGCCGTCAAT+GGG - chr1_1:76446635-76446654 Msa0044840:intron 50.0%
CGAGCATACTCACCCATTGA+CGG + chr1_1:76446650-76446669 None:intergenic 50.0%
CGTCAATGGGTGAGTATGCT+CGG - chr1_1:76446648-76446667 Msa0044840:intron 50.0%
ATGACGACGGTCGTGATTAG+GGG + chr1_1:76446684-76446703 None:intergenic 50.0%
GAATGACGACGGTCGTGATT+AGG + chr1_1:76446686-76446705 None:intergenic 50.0%
!! CAGGTGATGGAGAATGACGA+CGG + chr1_1:76446697-76446716 None:intergenic 50.0%
TCGTCATTCTCCATCACCTG+CGG - chr1_1:76446697-76446716 Msa0044840:intron 50.0%
!! TAATGGTGGTGGTGATTGCG+AGG - chr1_1:76446721-76446740 Msa0044840:intron 50.0%
! GTGGTGATTGCGAGGTTTTG+AGG - chr1_1:76446729-76446748 Msa0044840:intron 50.0%
!! CCTCTCAAACGAAGCATTGG+AGG + chr1_1:76446759-76446778 None:intergenic 50.0%
CCTCCAATGCTTCGTTTGAG+AGG - chr1_1:76446756-76446775 Msa0044840:CDS 50.0%
ATCGGGTGGGTCCATTAATC+TGG + chr1_1:76446831-76446850 None:intergenic 50.0%
TTCTATCCGGTTCATCGGGT+GGG + chr1_1:76446844-76446863 None:intergenic 50.0%
ACCGGATAGAAGATCTGGTC+GGG - chr1_1:76446853-76446872 Msa0044840:CDS 50.0%
ACCCGACCAGATCTTCTATC+CGG + chr1_1:76446857-76446876 None:intergenic 50.0%
! CAGCTTTTGTCCGGGATGAT+TGG - chr1_1:76446890-76446909 Msa0044840:CDS 50.0%
! TTTTGTCCGGGATGATTGGG+AGG - chr1_1:76446894-76446913 Msa0044840:CDS 50.0%
ACCTTTCCTCCCAATCATCC+CGG + chr1_1:76446903-76446922 None:intergenic 50.0%
! TCTTGGTGGGTACTTTGGTG+TGG - chr1_1:76447365-76447384 Msa0044840:intron 50.0%
GCCTTTGGTGGAGATTCGAA+AGG - chr1_1:76447504-76447523 Msa0044840:intron 50.0%
GCCTTTCGAATCTCCACCAA+AGG + chr1_1:76447508-76447527 None:intergenic 50.0%
!! AGAGGAAAGGCTTGCTGATG+AGG - chr1_1:76447537-76447556 Msa0044840:intron 50.0%
GTCAGCAGGTATGCTAACAC+CGG + chr1_1:76447581-76447600 None:intergenic 50.0%
AAGAGTGGAAGGTTGAGGAG+TGG - chr1_1:76447628-76447647 Msa0044840:CDS 50.0%
AATGGGATTGGGAATGGTGG+TGG - chr1_1:76447721-76447740 Msa0044840:intron 50.0%
! GCATGGGGCACTTACTACAT+TGG - chr1_1:76447828-76447847 Msa0044840:intron 50.0%
! CTTCCTTTTTGCTGCACTGC+AGG - chr1_1:76448487-76448506 Msa0044840:CDS 50.0%
GCAAATCCGCGTTGAAGAAC+TGG - chr1_1:76448607-76448626 Msa0044840:CDS 50.0%
TACCACCCAGTTCTTCAACG+CGG + chr1_1:76448616-76448635 None:intergenic 50.0%
!! TCTCCCTGAAGGCATTAACC+TGG + chr1_1:76449149-76449168 None:intergenic 50.0%
AGGTTAATGCCTTCAGGGAG+AGG - chr1_1:76449148-76449167 Msa0044840:CDS 50.0%
GTCTTCTTGCAGTGCAAACC+TGG - chr1_1:76449478-76449497 Msa0044840:CDS 50.0%
GAGGGGGACAAAATTAGACC+AGG + chr1_1:76449499-76449518 None:intergenic 50.0%
CAAGCAAAAATGAGGGGAGG+GGG + chr1_1:76449515-76449534 None:intergenic 50.0%
! TTTCAGGTGGGGTAGCTACA+TGG + chr1_1:76449696-76449715 None:intergenic 50.0%
GGAAGACGATCAGAAGTGGT+AGG + chr1_1:76450098-76450117 None:intergenic 50.0%
AGCTGGAAGACGATCAGAAG+TGG + chr1_1:76450102-76450121 None:intergenic 50.0%
CTGATCGTCTTCCAGCTAGT+TGG - chr1_1:76450105-76450124 Msa0044840:five_prime_UTR 50.0%
CTTAGTAGCCTCATGTTGCG+TGG - chr1_1:76450170-76450189 Msa0044840:five_prime_UTR 50.0%
TCACAGGGTTAGGGTCTCTC+TGG + chr1_1:76446079-76446098 None:intergenic 55.0%
GGAGAATAGGGAGCTGTTCG+TGG + chr1_1:76446181-76446200 None:intergenic 55.0%
GTTGGCGGTCGTGGAGAATA+GGG + chr1_1:76446193-76446212 None:intergenic 55.0%
TGTTGGCGGTCGTGGAGAAT+AGG + chr1_1:76446194-76446213 None:intergenic 55.0%
GAAAAGAGCGGCTGCTGTGT+TGG + chr1_1:76446211-76446230 None:intergenic 55.0%
! CAGCAGCCGCTCTTTTCCTA+TGG - chr1_1:76446214-76446233 Msa0044840:CDS 55.0%
! AGCCGCTCTTTTCCTATGGC+CGG - chr1_1:76446218-76446237 Msa0044840:CDS 55.0%
CTCCGGCCATAGGAAAAGAG+CGG + chr1_1:76446223-76446242 None:intergenic 55.0%
CCGCCACAAAGCTAAGCTAG+AGG - chr1_1:76446370-76446389 Msa0044840:intron 55.0%
CGCTGACGGAAAGTTAACGC+CGG - chr1_1:76446502-76446521 Msa0044840:CDS 55.0%
TGACGGAAAGTTAACGCCGG+TGG - chr1_1:76446505-76446524 Msa0044840:CDS 55.0%
CAACTCGCGTTGAATCACCG+TGG + chr1_1:76446540-76446559 None:intergenic 55.0%
CAGCAAGGATTCGCCGTCAA+TGG - chr1_1:76446634-76446653 Msa0044840:intron 55.0%
TCGTGATTAGGGGGTTGTGG+AGG + chr1_1:76446674-76446693 None:intergenic 55.0%
TGACGACGGTCGTGATTAGG+GGG + chr1_1:76446683-76446702 None:intergenic 55.0%
CGTCATTCTCCATCACCTGC+GGG - chr1_1:76446698-76446717 Msa0044840:intron 55.0%
TCTCCATCACCTGCGGGTAA+TGG - chr1_1:76446704-76446723 Msa0044840:intron 55.0%
AATGGACCCACCCGATGAAC+CGG - chr1_1:76446835-76446854 Msa0044840:CDS 55.0%
CTTCTATCCGGTTCATCGGG+TGG + chr1_1:76446845-76446864 None:intergenic 55.0%
TCCGGGATGATTGGGAGGAA+AGG - chr1_1:76446899-76446918 Msa0044840:CDS 55.0%
! GGTGGGTACTTTGGTGTGGT+TGG - chr1_1:76447369-76447388 Msa0044840:intron 55.0%
GGAGATTCGAAAGGCGGAAG+AGG - chr1_1:76447513-76447532 Msa0044840:intron 55.0%
TCGAAAGGCGGAAGAGGAAG+AGG - chr1_1:76447519-76447538 Msa0044840:intron 55.0%
AGGCGGAAGAGGAAGAGGAA+AGG - chr1_1:76447524-76447543 Msa0044840:intron 55.0%
! GCACTAGCTCTTAGGTCAGC+AGG + chr1_1:76447595-76447614 None:intergenic 55.0%
!! GGATTGGGAATGGTGGTGGT+GGG - chr1_1:76447725-76447744 Msa0044840:intron 55.0%
ATCCGCGTTGAAGAACTGGG+TGG - chr1_1:76448611-76448630 Msa0044840:CDS 55.0%
ACACACACACACACTACGGC+GGG + chr1_1:76448812-76448831 None:intergenic 55.0%
CACACACACACACACTACGG+CGG + chr1_1:76448813-76448832 None:intergenic 55.0%
GGCAGGGTCAAACAGAGCTT+AGG + chr1_1:76448904-76448923 None:intergenic 55.0%
AAGTGCTCTCCTCTCCCTGA+AGG + chr1_1:76449160-76449179 None:intergenic 55.0%
!! TAGAGAGTCGCGACTCGGTA+AGG + chr1_1:76450394-76450413 None:intergenic 55.0%
AAGAGCGGCTGCTGTGTTGG+CGG + chr1_1:76446208-76446227 None:intergenic 60.0%
CGGAAAGTTAACGCCGGTGG+AGG - chr1_1:76446508-76446527 Msa0044840:CDS 60.0%
ACCGTGGGAGATTCCTCCAC+CGG + chr1_1:76446524-76446543 None:intergenic 60.0%
CGGTCGTGATTAGGGGGTTG+TGG + chr1_1:76446677-76446696 None:intergenic 60.0%
CCACCATTACCCGCAGGTGA+TGG + chr1_1:76446710-76446729 None:intergenic 60.0%
! CCATCACCTGCGGGTAATGG+TGG - chr1_1:76446707-76446726 Msa0044840:intron 60.0%
! TCACCTGCGGGTAATGGTGG+TGG - chr1_1:76446710-76446729 Msa0044840:intron 60.0%
TCACCACCACCATTACCCGC+AGG + chr1_1:76446716-76446735 None:intergenic 60.0%
!! GGGATTGGGAATGGTGGTGG+TGG - chr1_1:76447724-76447743 Msa0044840:intron 60.0%
!! GTCGCGACTCGGTAAGGTGT+TGG + chr1_1:76450388-76450407 None:intergenic 60.0%
ACGACGACGTCTCCGGCCAT+AGG + chr1_1:76446233-76446252 None:intergenic 65.0%
GCCGGTGGAGGAATCTCCCA+CGG - chr1_1:76446520-76446539 Msa0044840:CDS 65.0%
AACACTCTCGGGGCCGCCTT+TGG - chr1_1:76447489-76447508 Msa0044840:intron 65.0%
ATGTTGCTAGGCGCGGCTGC+AGG - chr1_1:76447947-76447966 Msa0044840:intron 65.0%
! GGCTGCTGTGTTGGCGGTCG+TGG + chr1_1:76446202-76446221 None:intergenic 70.0%
ACTCTCGGGGCCGCCTTTGG+TGG - chr1_1:76447492-76447511 Msa0044840:intron 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 76445746 76450444 76445746 ID=Msa0044840;Name=Msa0044840
chr1_1 mRNA 76445746 76450444 76445746 ID=Msa0044840-mRNA-1;Parent=Msa0044840;Name=Msa0044840-mRNA-1;_AED=0.02;_eAED=0.02;_QI=352|1|1|1|1|1|5|299|925
chr1_1 exon 76445746 76446330 76445746 ID=Msa0044840-mRNA-1:exon:25955;Parent=Msa0044840-mRNA-1
chr1_1 exon 76446444 76446646 76446444 ID=Msa0044840-mRNA-1:exon:25954;Parent=Msa0044840-mRNA-1
chr1_1 exon 76446747 76447040 76446747 ID=Msa0044840-mRNA-1:exon:25953;Parent=Msa0044840-mRNA-1
chr1_1 exon 76447558 76447681 76447558 ID=Msa0044840-mRNA-1:exon:25952;Parent=Msa0044840-mRNA-1
chr1_1 exon 76448222 76450444 76448222 ID=Msa0044840-mRNA-1:exon:25951;Parent=Msa0044840-mRNA-1
chr1_1 five_prime_UTR 76450093 76450444 76450093 ID=Msa0044840-mRNA-1:five_prime_utr;Parent=Msa0044840-mRNA-1
chr1_1 CDS 76448222 76450092 76448222 ID=Msa0044840-mRNA-1:cds;Parent=Msa0044840-mRNA-1
chr1_1 CDS 76447558 76447681 76447558 ID=Msa0044840-mRNA-1:cds;Parent=Msa0044840-mRNA-1
chr1_1 CDS 76446747 76447040 76446747 ID=Msa0044840-mRNA-1:cds;Parent=Msa0044840-mRNA-1
chr1_1 CDS 76446444 76446646 76446444 ID=Msa0044840-mRNA-1:cds;Parent=Msa0044840-mRNA-1
chr1_1 CDS 76446045 76446330 76446045 ID=Msa0044840-mRNA-1:cds;Parent=Msa0044840-mRNA-1
chr1_1 three_prime_UTR 76445746 76446044 76445746 ID=Msa0044840-mRNA-1:three_prime_utr;Parent=Msa0044840-mRNA-1
Gene Sequence

>Msa0044840

ATGCAAACTATTAAAAAATCCTTCAAATCTTATGCTTCTCAGAACAATAAACATTCTAGAAAATTTTCTGCAGATTCCGACCACGAACAGCTCCCTATTCTCCACGACCGCCAACACAGCAGCCGCTCTTTTCCTATGGCCGGAGACGTCGTCGTGAAAATCAACGACGACGGCGGTGAACCTTCCCAAGCCAATAACAAGATTTGGAGAGAATCCAGCTACGATTTTTGGAATGACACCGGCGACAATGTTCGTGATGAGAGTTTTGATTTCCGCCACAAAGCTAAGCTAGAGGATCCACCGTCGCAACTAATCGGAAAATTTCTTCATAAACAGCGTGCCTCCGGTGATATGTCATTGGACATGGATTTGGAGATGGAGGAGCTTCAGAATGAAGGTAACGTCGCTGACGGAAAGTTAACGCCGGTGGAGGAATCTCCCACGGTGATTCAACGCGAGTTGAAAGTTAGTTTCGAGGAACCAGCTTCAAATTCGAATGGGATTGAAGCTGTGAACGATCCTGTTCGGAGAAGACACAGCAAGGATTCGCCGTCAATGGGTGAGTATGCTCGGCCTCCACAACCCCCTAATCACGACCGTCGTCATTCTCCATCACCTGCGGGTAATGGTGGTGGTGATTGCGAGGTTTTGAGGTGTTCCTCCAATGCTTCGTTTGAGAGGAACCTCTCAATGCAGAGAAAATCAACGTTAATGAAAACTAAAACTAAGTCCAGATTAATGGACCCACCCGATGAACCGGATAGAAGATCTGGTCGGGTTGCTAAATCGAGTCAGCTTTTGTCCGGGATGATTGGGAGGAAAGGTGATGATGATGAAGATGATCCTTTTATGGAAGAGGATTTTCCAGATGAGTATAAGAAAACACATTTCAGTCTTTGGATTCTTCTTGAATGGTTGAGTTTGATTTTAATTATTGGTGCATTAGTAACAACTTTGAGTGTTCCTTTGTTGAGGGATAAGACTCTGTGGCAGCTTAAGTTTTGGAAATGGGAAGTGATGATTCTTGTTCTAATATGTGGTAGATTGGTTTCTGATTGGGTTATTAGGATTGCTGTGTTTTGTATTGAAAGGAATTTCCTATTGAGAAAGAGGGTTCTTTATTTTGTGTATGGTGTCAGGAAAGCTGTGCAAAATTGTGTTTGGTTAGGGCTTGTTTTGATTGCATGGCATTTTCTGTTTGATAAGAGAGTTCAAAGAGAGACAAACAGTGATGTCCTTCAATATGTGACCAAGGTTTTGGTCTGTTTCTTGGTGGGTACTTTGGTGTGGTTGGTGAAAACTCTAGTGGTTAAGGTTTTAGCTTCTTCTTTTCATGTGAGTACATACTTTGATAGGATTCAAGAGTCACTGTTTAATCAGTTTGTGATCGAAACACTCTCGGGGCCGCCTTTGGTGGAGATTCGAAAGGCGGAAGAGGAAGAGGAAAGGCTTGCTGATGAGGTTCAGAAGTTGCAGAATGCCGGTGTTAGCATACCTGCTGACCTAAGAGCTAGTGCCTTTCCTAACATCAAGAGTGGAAGGTTGAGGAGTGGAATGCTTCAGAAAAGCCCTGTGGTTAAGAGTGGCAAGTTTTCAATGCCACTTTCCAAGAAATCTGATGATAATGGGATTGGGAATGGTGGTGGTGGGATAACTATTGATCACTTGCACAAGCTGAATCCAAATAACGTGTCGGCTTGGAATATGAAGAGGTTAATGAATATGGTTCGGCATGGGGCACTTACTACATTGGATGAGCAGATACTTGATTCTTCTGCTGATGATGAGCATGCCACACAAATCAGAAGTGAAAATGAGGCTAAAGCAGCTGCTAAGAAAATCTTTCAGAATGTTGCTAGGCGCGGCTGCAGGTTTATATACCCTGAGGACTTAATGCGTTTTATGCGAGAAGATGAGGCTATAAAAACCATAAATCTATTTGAAGGAGCGTCTGATTCTGGGAAAATAAGCAAATCCGCGTTGAAGAACTGGGTGGTTAATGCCTTCAGGGAGAGGAGAGCACTTGCTTTGACATTGAATGACACCAAAACCGCAGTGAACAAACTTCATCGAATGCTCAATTTCTTAGTTGCCATTATCATACTGGTTATTTGGCTCTTGATATTGGAAATTGCTACTACCAAATTTCTTCTTTTTGTGAGCTCACAACTTGTCTTGGTTGCATTTATATTCGGAAACACATGCAAGACTGTATTTGAAGCAATCATATTTTTATTTGTAATGCATCCATTTGATGTGGGAGATAGATGTGAAATTGATGCGACCCAGATGGTTGTAGAAGAGATGAACATCTTGACCACCGTATTTCTGAGATACGATAATCAAAAGATAACGATCCCTAACAGTGTCCTTGCTACTAAGGCCATACATAATTTCTACCGTAGTCCTGACATGGGAGATTCTATTGAATTCTGTATCCATGTAGCTACCCCACCTGAAAAGATTTCACTCATGAAACACAGAATACATAATTTCATTGATAACAAGAAGGAGCACTGGTATCCTTCACCGTTTATAGTCTTGAAGGATCACGACCAATTGAACATGGTTAAAGTGGCGATCTGGCCAACTCATAGAATGAACTTCCAAGACATGGGAGAAAGATATATCAGGAGGTCTCTTCTTATTGAAGAGTTGATGAAGATTTTCAGGGATCTCGACATTCAGTACCGTCTCATGCCTCTCGACATTAATGTTAGAGCTTTGCCTACCACTTCTGATCGTCTTCCAGCTAGTTGGACAACAATCACAAATTGA
Protein sequence

>Msa0044840

MQTIKKSFKSYASQNNKHSRKFSADSDHEQLPILHDRQHSSRSFPMAGDVVVKINDDGGEPSQANNKIWRESSYDFWNDTGDNVRDESFDFRHKAKLEDPPSQLIGKFLHKQRASGDMSLDMDLEMEELQNEGNVADGKLTPVEESPTVIQRELKVSFEEPASNSNGIEAVNDPVRRRHSKDSPSMGEYARPPQPPNHDRRHSPSPAGNGGGDCEVLRCSSNASFERNLSMQRKSTLMKTKTKSRLMDPPDEPDRRSGRVAKSSQLLSGMIGRKGDDDEDDPFMEEDFPDEYKKTHFSLWILLEWLSLILIIGALVTTLSVPLLRDKTLWQLKFWKWEVMILVLICGRLVSDWVIRIAVFCIERNFLLRKRVLYFVYGVRKAVQNCVWLGLVLIAWHFLFDKRVQRETNSDVLQYVTKVLVCFLVGTLVWLVKTLVVKVLASSFHVSTYFDRIQESLFNQFVIETLSGPPLVEIRKAEEEEERLADEVQKLQNAGVSIPADLRASAFPNIKSGRLRSGMLQKSPVVKSGKFSMPLSKKSDDNGIGNGGGGITIDHLHKLNPNNVSAWNMKRLMNMVRHGALTTLDEQILDSSADDEHATQIRSENEAKAAAKKIFQNVARRGCRFIYPEDLMRFMREDEAIKTINLFEGASDSGKISKSALKNWVVNAFRERRALALTLNDTKTAVNKLHRMLNFLVAIIILVIWLLILEIATTKFLLFVSSQLVLVAFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEIDATQMVVEEMNILTTVFLRYDNQKITIPNSVLATKAIHNFYRSPDMGDSIEFCIHVATPPEKISLMKHRIHNFIDNKKEHWYPSPFIVLKDHDQLNMVKVAIWPTHRMNFQDMGERYIRRSLLIEELMKIFRDLDIQYRLMPLDINVRALPTTSDRLPASWTTITN*