AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0645990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645990 MtrunA17_Chr4g0023621 77.241 145 19 2 1 131 16 160 1.38e-71 211
Msa0645990 MtrunA17_Chr2g0323081 58.621 145 42 3 1 129 16 158 5.05e-54 166
Msa0645990 MtrunA17_Chr4g0049001 50.694 144 55 2 1 129 16 158 2.74e-45 144
Msa0645990 MtrunA17_Chr2g0280491 48.951 143 59 2 1 129 16 158 1.69e-36 122
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0645990 AT4G21310.1 52.448 143 54 2 1 129 16 158 2.14e-47 150
Msa0645990 AT2G32280.1 49.655 145 59 2 1 131 16 160 5.29e-47 149
Msa0645990 AT2G32280.2 49.655 145 59 2 1 131 16 160 5.29e-47 149
Msa0645990 AT4G21310.2 45.000 120 52 2 24 129 1 120 2.27e-31 108
Msa0645990 AT1G05291.1 37.143 140 69 3 1 124 27 163 5.43e-17 73.9
Msa0645990 AT1G11500.1 32.215 149 80 4 2 129 17 165 1.36e-13 64.7
Msa0645990 AT1G11500.3 32.215 149 80 4 2 129 22 170 1.51e-13 64.7

Find 59 sgRNAs with CRISPR-Local

Find 344 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGAAAACACAAATATTTC+TGG 0.152103 4_3:-51524511 None:intergenic
TGCGATTATGGCCCCTGTTT+TGG 0.195648 4_3:+51526656 Msa0645990:three_prime_UTR
TTCTCAACAAGTTGCGATTA+TGG 0.218709 4_3:+51526644 Msa0645990:three_prime_UTR
GATGTTGCAGCTGGTATTCT+TGG 0.255223 4_3:+51524586 Msa0645990:CDS
AATCATATTTCCCTTATGTT+AGG 0.259505 4_3:-51526606 None:intergenic
GTTGGGTGCAGCAGTGCTAT+TGG 0.296588 4_3:+51524828 Msa0645990:CDS
TGATTTACTCATTATTATCT+TGG 0.313721 4_3:+51526476 Msa0645990:three_prime_UTR
TTGGGTGCAGCAGTGCTATT+GGG 0.315421 4_3:+51524829 Msa0645990:CDS
CAATTGTGTTTGTTCTCAAC+AGG 0.330421 4_3:+51524887 Msa0645990:CDS
AGTCATGATGCCTTCATGTT+GGG 0.345983 4_3:+51524805 Msa0645990:CDS
GGCAAAAGAGACCCATGTTT+AGG 0.350325 4_3:+51526563 Msa0645990:three_prime_UTR
GACGCCACGTGTCCCAAAAC+AGG 0.355530 4_3:-51526669 None:intergenic
GGATTGTCCATGCTGGTGAT+AGG 0.356876 4_3:+51526178 Msa0645990:CDS
CAACATCCATGATAACAATT+AGG 0.363009 4_3:-51524570 None:intergenic
GCAAAAGAGACCCATGTTTA+GGG 0.381325 4_3:+51526564 Msa0645990:three_prime_UTR
ATCATATTTCCCTTATGTTA+GGG 0.383201 4_3:-51526605 None:intergenic
CATTGTTACCACTGCTTCCA+TGG 0.385326 4_3:+51526312 Msa0645990:CDS
TTGTCTCCTAATTGTTATCA+TGG 0.385569 4_3:+51524564 Msa0645990:exon
CACCATCACTTTCTGTCCAT+TGG 0.397413 4_3:+51526244 Msa0645990:CDS
GATGCCTTCATGTTGGGGTT+GGG 0.408304 4_3:+51524811 Msa0645990:CDS
AAAGTACTGAGAGTTGTCTA+TGG 0.408478 4_3:-51524929 None:intergenic
ATCAGGGTTGTAGTGGCTGT+TGG 0.413714 4_3:+51526157 Msa0645990:intron
AGCTGGTATTCTTGGCTTTG+AGG 0.413890 4_3:+51524594 Msa0645990:CDS
TTGAAAACACAAATATTTCT+GGG 0.422188 4_3:-51524510 None:intergenic
TGATGCCTTCATGTTGGGGT+TGG 0.426974 4_3:+51524810 Msa0645990:CDS
CGCAACTTGTTGAGAAGATA+AGG 0.431968 4_3:-51526637 None:intergenic
GATTGTCCATGCTGGTGATA+GGG 0.456865 4_3:+51526179 Msa0645990:CDS
AAAACAGGTTAAGCATTTGA+AGG 0.491275 4_3:+51524756 Msa0645990:intron
CATCACTTTCTGTCCATTGG+TGG 0.495015 4_3:+51526247 Msa0645990:CDS
TACAATATGGCTAGAGTAGG+AGG 0.513670 4_3:+51524533 Msa0645990:five_prime_UTR
TAGGGGCTATGTCAAACAAC+AGG 0.531371 4_3:+51526197 Msa0645990:CDS
AACATGAAGGCATCATGACT+TGG 0.534290 4_3:-51524802 None:intergenic
GTCATGATGCCTTCATGTTG+GGG 0.535583 4_3:+51524806 Msa0645990:CDS
GGCTGTTGGATTGTCCATGC+TGG 0.538448 4_3:+51526171 Msa0645990:CDS
TTCTCAACAGGAATTTGAGA+AGG 0.542952 4_3:+51524899 Msa0645990:CDS
CATATTTCCCTTATGTTAGG+GGG 0.545265 4_3:-51526603 None:intergenic
AAAACATGAAATTCCACCAA+TGG 0.549360 4_3:-51526260 None:intergenic
TCTTACAAAATACTAATCCA+TGG 0.550482 4_3:-51526329 None:intergenic
AGAGCATATTTCCCTAAACA+TGG 0.551374 4_3:-51526575 None:intergenic
CAATACAATATGGCTAGAGT+AGG 0.551922 4_3:+51524530 Msa0645990:five_prime_UTR
AGGTTAAGCATTTGAAGGTG+TGG 0.557434 4_3:+51524761 Msa0645990:intron
GTTGTTGATCAGGGTTGTAG+TGG 0.569996 4_3:+51526150 Msa0645990:intron
AAGTCATGATGCCTTCATGT+TGG 0.571287 4_3:+51524804 Msa0645990:CDS
GTTATCATGGATGTTGCAGC+TGG 0.584347 4_3:+51524577 Msa0645990:exon
AAGTACTGAGAGTTGTCTAT+GGG 0.588754 4_3:-51524928 None:intergenic
ATACTAATCCATGGAAGCAG+TGG 0.591196 4_3:-51526320 None:intergenic
ATTGTCCATGCTGGTGATAG+GGG 0.591559 4_3:+51526180 Msa0645990:CDS
TATGTCAAACAACAGGTCAA+AGG 0.592422 4_3:+51526204 Msa0645990:CDS
ACGCCACGTGTCCCAAAACA+GGG 0.593408 4_3:-51526668 None:intergenic
TCATATTTCCCTTATGTTAG+GGG 0.602228 4_3:-51526604 None:intergenic
TGCACCCAACCCCAACATGA+AGG 0.603813 4_3:-51524815 None:intergenic
TACTGAGAGTTGTCTATGGG+AGG 0.604411 4_3:-51524925 None:intergenic
AACAGGTCAAAGGATTCTTG+TGG 0.609881 4_3:+51526214 Msa0645990:CDS
GGCTGAAATAGCACAAAACA+AGG 0.619758 4_3:+51524615 Msa0645990:CDS
AGTTCTAAGATTAGAAACAG+TGG 0.646953 4_3:-51524449 None:intergenic
CATAGCCCCTATCACCAGCA+TGG 0.647824 4_3:-51526185 None:intergenic
GAGCATATTTCCCTAAACAT+GGG 0.648214 4_3:-51526574 None:intergenic
CACCAATGGACAGAAAGTGA+TGG 0.662217 4_3:-51526246 None:intergenic
CGCCACGTGTCCCAAAACAG+GGG 0.699563 4_3:-51526667 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTGAAATAATTAATAACA+AGG + chr4_3:51524693-51524712 Msa0645990:intron 10.0%
!! CAATTAAGTAAAAAAAAAAA+AGG - chr4_3:51525417-51525436 None:intergenic 10.0%
!!! AAATAGTACTTTTTTTAATT+GGG + chr4_3:51526002-51526021 Msa0645990:intron 10.0%
!!! TTTTGAAATAATTAATAACA+AGG + chr4_3:51524693-51524712 Msa0645990:intron 10.0%
!! CAATTAAGTAAAAAAAAAAA+AGG - chr4_3:51525417-51525436 None:intergenic 10.0%
!!! AAATAGTACTTTTTTTAATT+GGG + chr4_3:51526002-51526021 Msa0645990:intron 10.0%
!! TAAAATATATTCCAAAATGT+TGG - chr4_3:51524656-51524675 None:intergenic 15.0%
!!! TTTTTTATTTTCAACAAAAC+AGG + chr4_3:51524741-51524760 Msa0645990:intron 15.0%
!!! TCCAAATAAAATATTTTACA+GGG - chr4_3:51525098-51525117 None:intergenic 15.0%
!!! ATCCAAATAAAATATTTTAC+AGG - chr4_3:51525099-51525118 None:intergenic 15.0%
!! AAAATTAACTCAAATTAACA+GGG - chr4_3:51525239-51525258 None:intergenic 15.0%
!! AAAATGTTTGAATATCTAAT+CGG + chr4_3:51525606-51525625 Msa0645990:intron 15.0%
!!! CAAATAGTACTTTTTTTAAT+TGG + chr4_3:51526001-51526020 Msa0645990:intron 15.0%
!!! AATAGTACTTTTTTTAATTG+GGG + chr4_3:51526003-51526022 Msa0645990:intron 15.0%
!! ATATTTAGTGAATGATTATT+TGG - chr4_3:51526110-51526129 None:intergenic 15.0%
!! TAAAATATATTCCAAAATGT+TGG - chr4_3:51524656-51524675 None:intergenic 15.0%
!!! TTTTTTATTTTCAACAAAAC+AGG + chr4_3:51524741-51524760 Msa0645990:intron 15.0%
!!! TCCAAATAAAATATTTTACA+GGG - chr4_3:51525098-51525117 None:intergenic 15.0%
!!! ATCCAAATAAAATATTTTAC+AGG - chr4_3:51525099-51525118 None:intergenic 15.0%
!! AAAATTAACTCAAATTAACA+GGG - chr4_3:51525239-51525258 None:intergenic 15.0%
!! AAAATGTTTGAATATCTAAT+CGG + chr4_3:51525606-51525625 Msa0645990:intron 15.0%
!!! CAAATAGTACTTTTTTTAAT+TGG + chr4_3:51526001-51526020 Msa0645990:intron 15.0%
!!! AATAGTACTTTTTTTAATTG+GGG + chr4_3:51526003-51526022 Msa0645990:intron 15.0%
!! ATATTTAGTGAATGATTATT+TGG - chr4_3:51526110-51526129 None:intergenic 15.0%
!! TTGAAAACACAAATATTTCT+GGG - chr4_3:51524513-51524532 None:intergenic 20.0%
!! ATTGAAAACACAAATATTTC+TGG - chr4_3:51524514-51524533 None:intergenic 20.0%
!!! TTTGTGTTTTCAATACAATA+TGG + chr4_3:51524520-51524539 Msa0645990:five_prime_UTR 20.0%
!! TATATTACCAGGTTAAAATA+AGG - chr4_3:51524956-51524975 None:intergenic 20.0%
!!! CCAAATAAAATATTTTACAG+GGG - chr4_3:51525097-51525116 None:intergenic 20.0%
!! CAAATAATCTTCAAATTACA+AGG - chr4_3:51525127-51525146 None:intergenic 20.0%
!! CTTGTAATTTGAAGATTATT+TGG + chr4_3:51525125-51525144 Msa0645990:intron 20.0%
!! AAATTAACTCAAATTAACAG+GGG - chr4_3:51525238-51525257 None:intergenic 20.0%
!! CAAAATTAACTCAAATTAAC+AGG - chr4_3:51525240-51525259 None:intergenic 20.0%
!!! CTGTTAATTTGAGTTAATTT+TGG + chr4_3:51525238-51525257 Msa0645990:intron 20.0%
!!! AATTTGAAGTTTTTTGGTTT+TGG - chr4_3:51525313-51525332 None:intergenic 20.0%
!!! ATCCAAAAAGAAAATTTTAC+AGG + chr4_3:51525344-51525363 Msa0645990:intron 20.0%
!!! TCCAAAAAGAAAATTTTACA+GGG + chr4_3:51525345-51525364 Msa0645990:intron 20.0%
!! AAATGTTTGAATATCTAATC+GGG + chr4_3:51525607-51525626 Msa0645990:intron 20.0%
!! TATTTAAAGAAAAGTGAAAG+TGG + chr4_3:51525689-51525708 Msa0645990:intron 20.0%
!! TATTGGATCAAAATACATTT+AGG - chr4_3:51526050-51526069 None:intergenic 20.0%
!! TATCAGTTACATTTAGTTAT+TGG - chr4_3:51526067-51526086 None:intergenic 20.0%
!! TGATTTACTCATTATTATCT+TGG + chr4_3:51526476-51526495 Msa0645990:three_prime_UTR 20.0%
!!! CTTTTGCCTTTTTTTAATAA+GGG - chr4_3:51526551-51526570 None:intergenic 20.0%
!!! TCTTTTGCCTTTTTTTAATA+AGG - chr4_3:51526552-51526571 None:intergenic 20.0%
!! TTGAAAACACAAATATTTCT+GGG - chr4_3:51524513-51524532 None:intergenic 20.0%
!! ATTGAAAACACAAATATTTC+TGG - chr4_3:51524514-51524533 None:intergenic 20.0%
!!! TTTGTGTTTTCAATACAATA+TGG + chr4_3:51524520-51524539 Msa0645990:five_prime_UTR 20.0%
!! TATATTACCAGGTTAAAATA+AGG - chr4_3:51524956-51524975 None:intergenic 20.0%
!!! CCAAATAAAATATTTTACAG+GGG - chr4_3:51525097-51525116 None:intergenic 20.0%
!! CAAATAATCTTCAAATTACA+AGG - chr4_3:51525127-51525146 None:intergenic 20.0%
!! CTTGTAATTTGAAGATTATT+TGG + chr4_3:51525125-51525144 Msa0645990:intron 20.0%
!! AAATTAACTCAAATTAACAG+GGG - chr4_3:51525238-51525257 None:intergenic 20.0%
!! CAAAATTAACTCAAATTAAC+AGG - chr4_3:51525240-51525259 None:intergenic 20.0%
!!! CTGTTAATTTGAGTTAATTT+TGG + chr4_3:51525238-51525257 Msa0645990:intron 20.0%
!!! AATTTGAAGTTTTTTGGTTT+TGG - chr4_3:51525313-51525332 None:intergenic 20.0%
!!! ATCCAAAAAGAAAATTTTAC+AGG + chr4_3:51525344-51525363 Msa0645990:intron 20.0%
!!! TCCAAAAAGAAAATTTTACA+GGG + chr4_3:51525345-51525364 Msa0645990:intron 20.0%
!! AAATGTTTGAATATCTAATC+GGG + chr4_3:51525607-51525626 Msa0645990:intron 20.0%
!! TATTTAAAGAAAAGTGAAAG+TGG + chr4_3:51525689-51525708 Msa0645990:intron 20.0%
!! TATTGGATCAAAATACATTT+AGG - chr4_3:51526050-51526069 None:intergenic 20.0%
!! TATCAGTTACATTTAGTTAT+TGG - chr4_3:51526067-51526086 None:intergenic 20.0%
!! TGATTTACTCATTATTATCT+TGG + chr4_3:51526476-51526495 Msa0645990:three_prime_UTR 20.0%
!!! CTTTTGCCTTTTTTTAATAA+GGG - chr4_3:51526551-51526570 None:intergenic 20.0%
!!! TCTTTTGCCTTTTTTTAATA+AGG - chr4_3:51526552-51526571 None:intergenic 20.0%
!!! TAGTTTTGTTATTCCAAAAC+AGG - chr4_3:51524995-51525014 None:intergenic 25.0%
! TTGGAATAACAAAACTAGTT+AGG + chr4_3:51524998-51525017 Msa0645990:intron 25.0%
!! CCCCTGTAAAATATTTTATT+TGG + chr4_3:51525094-51525113 Msa0645990:intron 25.0%
! GAAATTTCCTAAAATTACAG+GGG - chr4_3:51525177-51525196 None:intergenic 25.0%
! CGAAATTTCCTAAAATTACA+GGG - chr4_3:51525178-51525197 None:intergenic 25.0%
!!! CCTGTAATTTTAGGAAATTT+CGG + chr4_3:51525176-51525195 Msa0645990:intron 25.0%
! AATTAACTCAAATTAACAGG+GGG - chr4_3:51525237-51525256 None:intergenic 25.0%
! TGTAGAGTCAAAATTTATGA+AGG + chr4_3:51525286-51525305 Msa0645990:intron 25.0%
!!! CCTTGTAATTTGAAGTTTTT+TGG - chr4_3:51525319-51525338 None:intergenic 25.0%
! CCAAAAAACTTCAAATTACA+AGG + chr4_3:51525316-51525335 Msa0645990:intron 25.0%
! AAAACTTCAAATTACAAGGA+CGG + chr4_3:51525320-51525339 Msa0645990:intron 25.0%
!! CCAAAAAGAAAATTTTACAG+GGG + chr4_3:51525346-51525365 Msa0645990:intron 25.0%
!! CAAAAAGAAAATTTTACAGG+GGG + chr4_3:51525347-51525366 Msa0645990:intron 25.0%
! TTGTATCATTGTGATACTTA+TGG - chr4_3:51525449-51525468 None:intergenic 25.0%
! GTATCACAATGATACAATTT+AGG + chr4_3:51525452-51525471 Msa0645990:intron 25.0%
! ACGTAAATTTGGAGAAAATT+GGG - chr4_3:51525502-51525521 None:intergenic 25.0%
! AACGTAAATTTGGAGAAAAT+TGG - chr4_3:51525503-51525522 None:intergenic 25.0%
! AATGTTTGAATATCTAATCG+GGG + chr4_3:51525608-51525627 Msa0645990:intron 25.0%
!! TTAAGGTCAAAAGTACAATT+AGG + chr4_3:51525794-51525813 Msa0645990:intron 25.0%
!!! ACAATTAGGCCATTTTAATT+CGG + chr4_3:51525808-51525827 Msa0645990:intron 25.0%
!!! CTATGTACCATAGTTTTATT+CGG + chr4_3:51525939-51525958 Msa0645990:intron 25.0%
! TCTTACAAAATACTAATCCA+TGG - chr4_3:51526332-51526351 None:intergenic 25.0%
!! CTTTTGTAATAATTGTGCTA+AGG + chr4_3:51526442-51526461 Msa0645990:three_prime_UTR 25.0%
!!! GCAACATTTTAAAACTTATG+GGG - chr4_3:51526519-51526538 None:intergenic 25.0%
!!! CGCAACATTTTAAAACTTAT+GGG - chr4_3:51526520-51526539 None:intergenic 25.0%
!!! TCGCAACATTTTAAAACTTA+TGG - chr4_3:51526521-51526540 None:intergenic 25.0%
!!! GTTTTAAAATGTTGCGATTT+TGG + chr4_3:51526524-51526543 Msa0645990:three_prime_UTR 25.0%
! TTTGGTCCCTTATTAAAAAA+AGG + chr4_3:51526542-51526561 Msa0645990:three_prime_UTR 25.0%
! ATCATATTTCCCTTATGTTA+GGG - chr4_3:51526608-51526627 None:intergenic 25.0%
! AATCATATTTCCCTTATGTT+AGG - chr4_3:51526609-51526628 None:intergenic 25.0%
!!! TAGTTTTGTTATTCCAAAAC+AGG - chr4_3:51524995-51525014 None:intergenic 25.0%
! TTGGAATAACAAAACTAGTT+AGG + chr4_3:51524998-51525017 Msa0645990:intron 25.0%
!! CCCCTGTAAAATATTTTATT+TGG + chr4_3:51525094-51525113 Msa0645990:intron 25.0%
! GAAATTTCCTAAAATTACAG+GGG - chr4_3:51525177-51525196 None:intergenic 25.0%
! CGAAATTTCCTAAAATTACA+GGG - chr4_3:51525178-51525197 None:intergenic 25.0%
!!! CCTGTAATTTTAGGAAATTT+CGG + chr4_3:51525176-51525195 Msa0645990:intron 25.0%
! AATTAACTCAAATTAACAGG+GGG - chr4_3:51525237-51525256 None:intergenic 25.0%
! TGTAGAGTCAAAATTTATGA+AGG + chr4_3:51525286-51525305 Msa0645990:intron 25.0%
!!! CCTTGTAATTTGAAGTTTTT+TGG - chr4_3:51525319-51525338 None:intergenic 25.0%
! CCAAAAAACTTCAAATTACA+AGG + chr4_3:51525316-51525335 Msa0645990:intron 25.0%
! AAAACTTCAAATTACAAGGA+CGG + chr4_3:51525320-51525339 Msa0645990:intron 25.0%
!! CCAAAAAGAAAATTTTACAG+GGG + chr4_3:51525346-51525365 Msa0645990:intron 25.0%
!! CAAAAAGAAAATTTTACAGG+GGG + chr4_3:51525347-51525366 Msa0645990:intron 25.0%
! TTGTATCATTGTGATACTTA+TGG - chr4_3:51525449-51525468 None:intergenic 25.0%
! GTATCACAATGATACAATTT+AGG + chr4_3:51525452-51525471 Msa0645990:intron 25.0%
! ACGTAAATTTGGAGAAAATT+GGG - chr4_3:51525502-51525521 None:intergenic 25.0%
! AACGTAAATTTGGAGAAAAT+TGG - chr4_3:51525503-51525522 None:intergenic 25.0%
! AATGTTTGAATATCTAATCG+GGG + chr4_3:51525608-51525627 Msa0645990:intron 25.0%
!! TTAAGGTCAAAAGTACAATT+AGG + chr4_3:51525794-51525813 Msa0645990:intron 25.0%
!!! ACAATTAGGCCATTTTAATT+CGG + chr4_3:51525808-51525827 Msa0645990:intron 25.0%
!!! CTATGTACCATAGTTTTATT+CGG + chr4_3:51525939-51525958 Msa0645990:intron 25.0%
! TCTTACAAAATACTAATCCA+TGG - chr4_3:51526332-51526351 None:intergenic 25.0%
!! CTTTTGTAATAATTGTGCTA+AGG + chr4_3:51526442-51526461 Msa0645990:three_prime_UTR 25.0%
!!! GCAACATTTTAAAACTTATG+GGG - chr4_3:51526519-51526538 None:intergenic 25.0%
!!! CGCAACATTTTAAAACTTAT+GGG - chr4_3:51526520-51526539 None:intergenic 25.0%
!!! TCGCAACATTTTAAAACTTA+TGG - chr4_3:51526521-51526540 None:intergenic 25.0%
!!! GTTTTAAAATGTTGCGATTT+TGG + chr4_3:51526524-51526543 Msa0645990:three_prime_UTR 25.0%
! TTTGGTCCCTTATTAAAAAA+AGG + chr4_3:51526542-51526561 Msa0645990:three_prime_UTR 25.0%
! ATCATATTTCCCTTATGTTA+GGG - chr4_3:51526608-51526627 None:intergenic 25.0%
! AATCATATTTCCCTTATGTT+AGG - chr4_3:51526609-51526628 None:intergenic 25.0%
!! AGTTCTAAGATTAGAAACAG+TGG - chr4_3:51524452-51524471 None:intergenic 30.0%
TTGTCTCCTAATTGTTATCA+TGG + chr4_3:51524564-51524583 Msa0645990:exon 30.0%
CAACATCCATGATAACAATT+AGG - chr4_3:51524573-51524592 None:intergenic 30.0%
! TATGCTTGAATCCAACATTT+TGG + chr4_3:51524642-51524661 Msa0645990:intron 30.0%
AAAACAGGTTAAGCATTTGA+AGG + chr4_3:51524756-51524775 Msa0645990:intron 30.0%
! ACATGTTTAGCCAATTTGTT+AGG + chr4_3:51524858-51524877 Msa0645990:intron 30.0%
!!! TACTTTGCCTTATTTTAACC+TGG + chr4_3:51524946-51524965 Msa0645990:intron 30.0%
! AATATTTTACAGGGGAAAAC+CGG - chr4_3:51525089-51525108 None:intergenic 30.0%
! ATTTTGTCCCCTGTAATTTT+AGG + chr4_3:51525167-51525186 Msa0645990:intron 30.0%
CCGAAATTTCCTAAAATTAC+AGG - chr4_3:51525179-51525198 None:intergenic 30.0%
ACTCTACAAAATCGATGATA+TGG - chr4_3:51525274-51525293 None:intergenic 30.0%
! CCCCTGTAAAATTTTCTTTT+TGG - chr4_3:51525349-51525368 None:intergenic 30.0%
TGGAAATGACGTATATTACA+GGG + chr4_3:51525375-51525394 Msa0645990:intron 30.0%
AATTTGGAGAAAATTGGGAT+GGG - chr4_3:51525497-51525516 None:intergenic 30.0%
AAATTTGGAGAAAATTGGGA+TGG - chr4_3:51525498-51525517 None:intergenic 30.0%
ATGTCATCTCAACGTAAATT+TGG - chr4_3:51525513-51525532 None:intergenic 30.0%
GTATTAAAGAATAGCCACAT+TGG - chr4_3:51525567-51525586 None:intergenic 30.0%
! TGTCACTTCAGTGAAAAATT+TGG + chr4_3:51525744-51525763 Msa0645990:intron 30.0%
TTGCACAATCATGATACTTA+AGG + chr4_3:51525777-51525796 Msa0645990:intron 30.0%
!!! CAATTAGGCCATTTTAATTC+GGG + chr4_3:51525809-51525828 Msa0645990:intron 30.0%
!!! ACCATAGTTTTATTCGGAAA+CGG + chr4_3:51525945-51525964 Msa0645990:intron 30.0%
GATCAACAACACAATCAAAA+GGG - chr4_3:51526140-51526159 None:intergenic 30.0%
TGATCAACAACACAATCAAA+AGG - chr4_3:51526141-51526160 None:intergenic 30.0%
!! TTTTGATTGTGTTGTTGATC+AGG + chr4_3:51526140-51526159 Msa0645990:intron 30.0%
! TTTGATTGTGTTGTTGATCA+GGG + chr4_3:51526141-51526160 Msa0645990:intron 30.0%
AAAACATGAAATTCCACCAA+TGG - chr4_3:51526263-51526282 None:intergenic 30.0%
!! GGAATTTCATGTTTTGTTCA+TGG + chr4_3:51526268-51526287 Msa0645990:CDS 30.0%
!!! GTTCATGTTTTTAGTGCTTT+TGG + chr4_3:51526374-51526393 Msa0645990:three_prime_UTR 30.0%
TCATATTTCCCTTATGTTAG+GGG - chr4_3:51526607-51526626 None:intergenic 30.0%
!! AGTTCTAAGATTAGAAACAG+TGG - chr4_3:51524452-51524471 None:intergenic 30.0%
TTGTCTCCTAATTGTTATCA+TGG + chr4_3:51524564-51524583 Msa0645990:exon 30.0%
CAACATCCATGATAACAATT+AGG - chr4_3:51524573-51524592 None:intergenic 30.0%
! TATGCTTGAATCCAACATTT+TGG + chr4_3:51524642-51524661 Msa0645990:intron 30.0%
AAAACAGGTTAAGCATTTGA+AGG + chr4_3:51524756-51524775 Msa0645990:intron 30.0%
! ACATGTTTAGCCAATTTGTT+AGG + chr4_3:51524858-51524877 Msa0645990:intron 30.0%
!!! TACTTTGCCTTATTTTAACC+TGG + chr4_3:51524946-51524965 Msa0645990:intron 30.0%
! AATATTTTACAGGGGAAAAC+CGG - chr4_3:51525089-51525108 None:intergenic 30.0%
! ATTTTGTCCCCTGTAATTTT+AGG + chr4_3:51525167-51525186 Msa0645990:intron 30.0%
CCGAAATTTCCTAAAATTAC+AGG - chr4_3:51525179-51525198 None:intergenic 30.0%
ACTCTACAAAATCGATGATA+TGG - chr4_3:51525274-51525293 None:intergenic 30.0%
! CCCCTGTAAAATTTTCTTTT+TGG - chr4_3:51525349-51525368 None:intergenic 30.0%
TGGAAATGACGTATATTACA+GGG + chr4_3:51525375-51525394 Msa0645990:intron 30.0%
AATTTGGAGAAAATTGGGAT+GGG - chr4_3:51525497-51525516 None:intergenic 30.0%
AAATTTGGAGAAAATTGGGA+TGG - chr4_3:51525498-51525517 None:intergenic 30.0%
ATGTCATCTCAACGTAAATT+TGG - chr4_3:51525513-51525532 None:intergenic 30.0%
GTATTAAAGAATAGCCACAT+TGG - chr4_3:51525567-51525586 None:intergenic 30.0%
! TGTCACTTCAGTGAAAAATT+TGG + chr4_3:51525744-51525763 Msa0645990:intron 30.0%
TTGCACAATCATGATACTTA+AGG + chr4_3:51525777-51525796 Msa0645990:intron 30.0%
!!! CAATTAGGCCATTTTAATTC+GGG + chr4_3:51525809-51525828 Msa0645990:intron 30.0%
!!! ACCATAGTTTTATTCGGAAA+CGG + chr4_3:51525945-51525964 Msa0645990:intron 30.0%
GATCAACAACACAATCAAAA+GGG - chr4_3:51526140-51526159 None:intergenic 30.0%
TGATCAACAACACAATCAAA+AGG - chr4_3:51526141-51526160 None:intergenic 30.0%
!! TTTTGATTGTGTTGTTGATC+AGG + chr4_3:51526140-51526159 Msa0645990:intron 30.0%
! TTTGATTGTGTTGTTGATCA+GGG + chr4_3:51526141-51526160 Msa0645990:intron 30.0%
AAAACATGAAATTCCACCAA+TGG - chr4_3:51526263-51526282 None:intergenic 30.0%
!! GGAATTTCATGTTTTGTTCA+TGG + chr4_3:51526268-51526287 Msa0645990:CDS 30.0%
!!! GTTCATGTTTTTAGTGCTTT+TGG + chr4_3:51526374-51526393 Msa0645990:three_prime_UTR 30.0%
TCATATTTCCCTTATGTTAG+GGG - chr4_3:51526607-51526626 None:intergenic 30.0%
! GATTTTCTTTCTGTTCTAGC+TGG - chr4_3:51524491-51524510 None:intergenic 35.0%
CAATACAATATGGCTAGAGT+AGG + chr4_3:51524530-51524549 Msa0645990:five_prime_UTR 35.0%
!! TGTTTAGCCAATTTGTTAGG+TGG + chr4_3:51524861-51524880 Msa0645990:intron 35.0%
ATTGCAACCACCTAACAAAT+TGG - chr4_3:51524871-51524890 None:intergenic 35.0%
CAATTGTGTTTGTTCTCAAC+AGG + chr4_3:51524887-51524906 Msa0645990:CDS 35.0%
TTCTCAACAGGAATTTGAGA+AGG + chr4_3:51524899-51524918 Msa0645990:CDS 35.0%
!! AAGTACTGAGAGTTGTCTAT+GGG - chr4_3:51524931-51524950 None:intergenic 35.0%
!! AAAGTACTGAGAGTTGTCTA+TGG - chr4_3:51524932-51524951 None:intergenic 35.0%
! TTGTTATTCCAAAACAGGAC+AGG - chr4_3:51524990-51525009 None:intergenic 35.0%
!!! GTGTTTTAGCCCTGTAATAA+AGG + chr4_3:51525057-51525076 Msa0645990:intron 35.0%
CGGAAATGACCTTTATTACA+GGG - chr4_3:51525069-51525088 None:intergenic 35.0%
CCTGTAATAAAGGTCATTTC+CGG + chr4_3:51525067-51525086 Msa0645990:intron 35.0%
! GGGGACAAAATTTTTCATGA+AGG - chr4_3:51525158-51525177 None:intergenic 35.0%
! CGAAATTTGCTCAAATTGCA+GGG - chr4_3:51525209-51525228 None:intergenic 35.0%
CCTGCAATTTGAGCAAATTT+CGG + chr4_3:51525207-51525226 Msa0645990:intron 35.0%
ACAAAATCGATGATATGGCA+GGG - chr4_3:51525269-51525288 None:intergenic 35.0%
TACAAAATCGATGATATGGC+AGG - chr4_3:51525270-51525289 None:intergenic 35.0%
! AAATTTTACAGGGGGAAAAC+TGG + chr4_3:51525355-51525374 Msa0645990:intron 35.0%
CTGGAAATGACGTATATTAC+AGG + chr4_3:51525374-51525393 Msa0645990:intron 35.0%
GGAAATGACGTATATTACAG+GGG + chr4_3:51525376-51525395 Msa0645990:intron 35.0%
ATTTGGAGAAAATTGGGATG+GGG - chr4_3:51525496-51525515 None:intergenic 35.0%
CACTTCAGTGAAAAATTTGG+AGG + chr4_3:51525747-51525766 Msa0645990:intron 35.0%
TCGATTCACCCGAATTAAAA+TGG - chr4_3:51525820-51525839 None:intergenic 35.0%
TCCGTTTCCGAATAAAACTA+TGG - chr4_3:51525949-51525968 None:intergenic 35.0%
TATGTCAAACAACAGGTCAA+AGG + chr4_3:51526204-51526223 Msa0645990:CDS 35.0%
GAGCATATTTCCCTAAACAT+GGG - chr4_3:51526577-51526596 None:intergenic 35.0%
AGAGCATATTTCCCTAAACA+TGG - chr4_3:51526578-51526597 None:intergenic 35.0%
CATATTTCCCTTATGTTAGG+GGG - chr4_3:51526606-51526625 None:intergenic 35.0%
TTCTCAACAAGTTGCGATTA+TGG + chr4_3:51526644-51526663 Msa0645990:three_prime_UTR 35.0%
! GATTTTCTTTCTGTTCTAGC+TGG - chr4_3:51524491-51524510 None:intergenic 35.0%
CAATACAATATGGCTAGAGT+AGG + chr4_3:51524530-51524549 Msa0645990:five_prime_UTR 35.0%
!! TGTTTAGCCAATTTGTTAGG+TGG + chr4_3:51524861-51524880 Msa0645990:intron 35.0%
ATTGCAACCACCTAACAAAT+TGG - chr4_3:51524871-51524890 None:intergenic 35.0%
CAATTGTGTTTGTTCTCAAC+AGG + chr4_3:51524887-51524906 Msa0645990:CDS 35.0%
TTCTCAACAGGAATTTGAGA+AGG + chr4_3:51524899-51524918 Msa0645990:CDS 35.0%
!! AAGTACTGAGAGTTGTCTAT+GGG - chr4_3:51524931-51524950 None:intergenic 35.0%
!! AAAGTACTGAGAGTTGTCTA+TGG - chr4_3:51524932-51524951 None:intergenic 35.0%
! TTGTTATTCCAAAACAGGAC+AGG - chr4_3:51524990-51525009 None:intergenic 35.0%
!!! GTGTTTTAGCCCTGTAATAA+AGG + chr4_3:51525057-51525076 Msa0645990:intron 35.0%
CGGAAATGACCTTTATTACA+GGG - chr4_3:51525069-51525088 None:intergenic 35.0%
CCTGTAATAAAGGTCATTTC+CGG + chr4_3:51525067-51525086 Msa0645990:intron 35.0%
! GGGGACAAAATTTTTCATGA+AGG - chr4_3:51525158-51525177 None:intergenic 35.0%
! CGAAATTTGCTCAAATTGCA+GGG - chr4_3:51525209-51525228 None:intergenic 35.0%
CCTGCAATTTGAGCAAATTT+CGG + chr4_3:51525207-51525226 Msa0645990:intron 35.0%
ACAAAATCGATGATATGGCA+GGG - chr4_3:51525269-51525288 None:intergenic 35.0%
TACAAAATCGATGATATGGC+AGG - chr4_3:51525270-51525289 None:intergenic 35.0%
! AAATTTTACAGGGGGAAAAC+TGG + chr4_3:51525355-51525374 Msa0645990:intron 35.0%
CTGGAAATGACGTATATTAC+AGG + chr4_3:51525374-51525393 Msa0645990:intron 35.0%
GGAAATGACGTATATTACAG+GGG + chr4_3:51525376-51525395 Msa0645990:intron 35.0%
ATTTGGAGAAAATTGGGATG+GGG - chr4_3:51525496-51525515 None:intergenic 35.0%
CACTTCAGTGAAAAATTTGG+AGG + chr4_3:51525747-51525766 Msa0645990:intron 35.0%
TCGATTCACCCGAATTAAAA+TGG - chr4_3:51525820-51525839 None:intergenic 35.0%
TCCGTTTCCGAATAAAACTA+TGG - chr4_3:51525949-51525968 None:intergenic 35.0%
TATGTCAAACAACAGGTCAA+AGG + chr4_3:51526204-51526223 Msa0645990:CDS 35.0%
GAGCATATTTCCCTAAACAT+GGG - chr4_3:51526577-51526596 None:intergenic 35.0%
AGAGCATATTTCCCTAAACA+TGG - chr4_3:51526578-51526597 None:intergenic 35.0%
CATATTTCCCTTATGTTAGG+GGG - chr4_3:51526606-51526625 None:intergenic 35.0%
TTCTCAACAAGTTGCGATTA+TGG + chr4_3:51526644-51526663 Msa0645990:three_prime_UTR 35.0%
TACAATATGGCTAGAGTAGG+AGG + chr4_3:51524533-51524552 Msa0645990:five_prime_UTR 40.0%
GGCTGAAATAGCACAAAACA+AGG + chr4_3:51524615-51524634 Msa0645990:CDS 40.0%
AGGTTAAGCATTTGAAGGTG+TGG + chr4_3:51524761-51524780 Msa0645990:intron 40.0%
!! AACATGAAGGCATCATGACT+TGG - chr4_3:51524805-51524824 None:intergenic 40.0%
AAGTCATGATGCCTTCATGT+TGG + chr4_3:51524804-51524823 Msa0645990:CDS 40.0%
AGTCATGATGCCTTCATGTT+GGG + chr4_3:51524805-51524824 Msa0645990:CDS 40.0%
AGAGGCAGAGATATATTACC+AGG - chr4_3:51524967-51524986 None:intergenic 40.0%
CCGGAAATGACCTTTATTAC+AGG - chr4_3:51525070-51525089 None:intergenic 40.0%
! AATTTGCTCAAATTGCAGGG+AGG - chr4_3:51525206-51525225 None:intergenic 40.0%
! CCGAAATTTGCTCAAATTGC+AGG - chr4_3:51525210-51525229 None:intergenic 40.0%
CAAAATCGATGATATGGCAG+GGG - chr4_3:51525268-51525287 None:intergenic 40.0%
! ATGGGGACTAGAAAGCATAA+GGG - chr4_3:51525479-51525498 None:intergenic 40.0%
AACAGGTCAAAGGATTCTTG+TGG + chr4_3:51526214-51526233 Msa0645990:CDS 40.0%
ATACTAATCCATGGAAGCAG+TGG - chr4_3:51526323-51526342 None:intergenic 40.0%
GCAAAAGAGACCCATGTTTA+GGG + chr4_3:51526564-51526583 Msa0645990:three_prime_UTR 40.0%
! TCTTTTGACCCCCTAACATA+AGG + chr4_3:51526595-51526614 Msa0645990:three_prime_UTR 40.0%
! CTTTTGACCCCCTAACATAA+GGG + chr4_3:51526596-51526615 Msa0645990:three_prime_UTR 40.0%
!! CGCAACTTGTTGAGAAGATA+AGG - chr4_3:51526640-51526659 None:intergenic 40.0%
TACAATATGGCTAGAGTAGG+AGG + chr4_3:51524533-51524552 Msa0645990:five_prime_UTR 40.0%
GGCTGAAATAGCACAAAACA+AGG + chr4_3:51524615-51524634 Msa0645990:CDS 40.0%
AGGTTAAGCATTTGAAGGTG+TGG + chr4_3:51524761-51524780 Msa0645990:intron 40.0%
!! AACATGAAGGCATCATGACT+TGG - chr4_3:51524805-51524824 None:intergenic 40.0%
AAGTCATGATGCCTTCATGT+TGG + chr4_3:51524804-51524823 Msa0645990:CDS 40.0%
AGTCATGATGCCTTCATGTT+GGG + chr4_3:51524805-51524824 Msa0645990:CDS 40.0%
AGAGGCAGAGATATATTACC+AGG - chr4_3:51524967-51524986 None:intergenic 40.0%
CCGGAAATGACCTTTATTAC+AGG - chr4_3:51525070-51525089 None:intergenic 40.0%
! AATTTGCTCAAATTGCAGGG+AGG - chr4_3:51525206-51525225 None:intergenic 40.0%
! CCGAAATTTGCTCAAATTGC+AGG - chr4_3:51525210-51525229 None:intergenic 40.0%
CAAAATCGATGATATGGCAG+GGG - chr4_3:51525268-51525287 None:intergenic 40.0%
! ATGGGGACTAGAAAGCATAA+GGG - chr4_3:51525479-51525498 None:intergenic 40.0%
AACAGGTCAAAGGATTCTTG+TGG + chr4_3:51526214-51526233 Msa0645990:CDS 40.0%
ATACTAATCCATGGAAGCAG+TGG - chr4_3:51526323-51526342 None:intergenic 40.0%
GCAAAAGAGACCCATGTTTA+GGG + chr4_3:51526564-51526583 Msa0645990:three_prime_UTR 40.0%
! TCTTTTGACCCCCTAACATA+AGG + chr4_3:51526595-51526614 Msa0645990:three_prime_UTR 40.0%
! CTTTTGACCCCCTAACATAA+GGG + chr4_3:51526596-51526615 Msa0645990:three_prime_UTR 40.0%
!! CGCAACTTGTTGAGAAGATA+AGG - chr4_3:51526640-51526659 None:intergenic 40.0%
GTTATCATGGATGTTGCAGC+TGG + chr4_3:51524577-51524596 Msa0645990:exon 45.0%
GATGTTGCAGCTGGTATTCT+TGG + chr4_3:51524586-51524605 Msa0645990:CDS 45.0%
!! AGCTGGTATTCTTGGCTTTG+AGG + chr4_3:51524594-51524613 Msa0645990:CDS 45.0%
GTCATGATGCCTTCATGTTG+GGG + chr4_3:51524806-51524825 Msa0645990:CDS 45.0%
TACTGAGAGTTGTCTATGGG+AGG - chr4_3:51524928-51524947 None:intergenic 45.0%
ATTCCAAAACAGGACAGGAG+AGG - chr4_3:51524985-51525004 None:intergenic 45.0%
! TGGGGACTAGAAAGCATAAG+GGG - chr4_3:51525478-51525497 None:intergenic 45.0%
! GATGGGGACTAGAAAGCATA+AGG - chr4_3:51525480-51525499 None:intergenic 45.0%
GTTGTTGATCAGGGTTGTAG+TGG + chr4_3:51526150-51526169 Msa0645990:intron 45.0%
GATTGTCCATGCTGGTGATA+GGG + chr4_3:51526179-51526198 Msa0645990:CDS 45.0%
ATTGTCCATGCTGGTGATAG+GGG + chr4_3:51526180-51526199 Msa0645990:CDS 45.0%
TAGGGGCTATGTCAAACAAC+AGG + chr4_3:51526197-51526216 Msa0645990:CDS 45.0%
CACCATCACTTTCTGTCCAT+TGG + chr4_3:51526244-51526263 Msa0645990:CDS 45.0%
CACCAATGGACAGAAAGTGA+TGG - chr4_3:51526249-51526268 None:intergenic 45.0%
CATCACTTTCTGTCCATTGG+TGG + chr4_3:51526247-51526266 Msa0645990:CDS 45.0%
CATTGTTACCACTGCTTCCA+TGG + chr4_3:51526312-51526331 Msa0645990:CDS 45.0%
GGCAAAAGAGACCCATGTTT+AGG + chr4_3:51526563-51526582 Msa0645990:three_prime_UTR 45.0%
GTTATCATGGATGTTGCAGC+TGG + chr4_3:51524577-51524596 Msa0645990:exon 45.0%
GATGTTGCAGCTGGTATTCT+TGG + chr4_3:51524586-51524605 Msa0645990:CDS 45.0%
!! AGCTGGTATTCTTGGCTTTG+AGG + chr4_3:51524594-51524613 Msa0645990:CDS 45.0%
GTCATGATGCCTTCATGTTG+GGG + chr4_3:51524806-51524825 Msa0645990:CDS 45.0%
TACTGAGAGTTGTCTATGGG+AGG - chr4_3:51524928-51524947 None:intergenic 45.0%
ATTCCAAAACAGGACAGGAG+AGG - chr4_3:51524985-51525004 None:intergenic 45.0%
! TGGGGACTAGAAAGCATAAG+GGG - chr4_3:51525478-51525497 None:intergenic 45.0%
! GATGGGGACTAGAAAGCATA+AGG - chr4_3:51525480-51525499 None:intergenic 45.0%
GTTGTTGATCAGGGTTGTAG+TGG + chr4_3:51526150-51526169 Msa0645990:intron 45.0%
GATTGTCCATGCTGGTGATA+GGG + chr4_3:51526179-51526198 Msa0645990:CDS 45.0%
ATTGTCCATGCTGGTGATAG+GGG + chr4_3:51526180-51526199 Msa0645990:CDS 45.0%
TAGGGGCTATGTCAAACAAC+AGG + chr4_3:51526197-51526216 Msa0645990:CDS 45.0%
CACCATCACTTTCTGTCCAT+TGG + chr4_3:51526244-51526263 Msa0645990:CDS 45.0%
CACCAATGGACAGAAAGTGA+TGG - chr4_3:51526249-51526268 None:intergenic 45.0%
CATCACTTTCTGTCCATTGG+TGG + chr4_3:51526247-51526266 Msa0645990:CDS 45.0%
CATTGTTACCACTGCTTCCA+TGG + chr4_3:51526312-51526331 Msa0645990:CDS 45.0%
GGCAAAAGAGACCCATGTTT+AGG + chr4_3:51526563-51526582 Msa0645990:three_prime_UTR 45.0%
TGATGCCTTCATGTTGGGGT+TGG + chr4_3:51524810-51524829 Msa0645990:CDS 50.0%
GATGCCTTCATGTTGGGGTT+GGG + chr4_3:51524811-51524830 Msa0645990:CDS 50.0%
! TTGGGTGCAGCAGTGCTATT+GGG + chr4_3:51524829-51524848 Msa0645990:CDS 50.0%
CCACATTGGCCAAGAGAGTT+GGG - chr4_3:51525553-51525572 None:intergenic 50.0%
ATCAGGGTTGTAGTGGCTGT+TGG + chr4_3:51526157-51526176 Msa0645990:intron 50.0%
GGATTGTCCATGCTGGTGAT+AGG + chr4_3:51526178-51526197 Msa0645990:CDS 50.0%
! TGCGATTATGGCCCCTGTTT+TGG + chr4_3:51526656-51526675 Msa0645990:three_prime_UTR 50.0%
! GCGATTATGGCCCCTGTTTT+GGG + chr4_3:51526657-51526676 Msa0645990:three_prime_UTR 50.0%
TGATGCCTTCATGTTGGGGT+TGG + chr4_3:51524810-51524829 Msa0645990:CDS 50.0%
GATGCCTTCATGTTGGGGTT+GGG + chr4_3:51524811-51524830 Msa0645990:CDS 50.0%
! TTGGGTGCAGCAGTGCTATT+GGG + chr4_3:51524829-51524848 Msa0645990:CDS 50.0%
CCACATTGGCCAAGAGAGTT+GGG - chr4_3:51525553-51525572 None:intergenic 50.0%
ATCAGGGTTGTAGTGGCTGT+TGG + chr4_3:51526157-51526176 Msa0645990:intron 50.0%
GGATTGTCCATGCTGGTGAT+AGG + chr4_3:51526178-51526197 Msa0645990:CDS 50.0%
! TGCGATTATGGCCCCTGTTT+TGG + chr4_3:51526656-51526675 Msa0645990:three_prime_UTR 50.0%
! GCGATTATGGCCCCTGTTTT+GGG + chr4_3:51526657-51526676 Msa0645990:three_prime_UTR 50.0%
TGCACCCAACCCCAACATGA+AGG - chr4_3:51524818-51524837 None:intergenic 55.0%
GTTGGGTGCAGCAGTGCTAT+TGG + chr4_3:51524828-51524847 Msa0645990:CDS 55.0%
! CTGCCTCTCCTGTCCTGTTT+TGG + chr4_3:51524979-51524998 Msa0645990:intron 55.0%
GCCAAGAGAGTTGGGAGTCA+CGG - chr4_3:51525545-51525564 None:intergenic 55.0%
CCCAACTCTCTTGGCCAATG+TGG + chr4_3:51525550-51525569 Msa0645990:intron 55.0%
GCCACATTGGCCAAGAGAGT+TGG - chr4_3:51525554-51525573 None:intergenic 55.0%
GGCTGTTGGATTGTCCATGC+TGG + chr4_3:51526171-51526190 Msa0645990:CDS 55.0%
CATAGCCCCTATCACCAGCA+TGG - chr4_3:51526188-51526207 None:intergenic 55.0%
TGCACCCAACCCCAACATGA+AGG - chr4_3:51524818-51524837 None:intergenic 55.0%
GTTGGGTGCAGCAGTGCTAT+TGG + chr4_3:51524828-51524847 Msa0645990:CDS 55.0%
! CTGCCTCTCCTGTCCTGTTT+TGG + chr4_3:51524979-51524998 Msa0645990:intron 55.0%
GCCAAGAGAGTTGGGAGTCA+CGG - chr4_3:51525545-51525564 None:intergenic 55.0%
CCCAACTCTCTTGGCCAATG+TGG + chr4_3:51525550-51525569 Msa0645990:intron 55.0%
GCCACATTGGCCAAGAGAGT+TGG - chr4_3:51525554-51525573 None:intergenic 55.0%
GGCTGTTGGATTGTCCATGC+TGG + chr4_3:51526171-51526190 Msa0645990:CDS 55.0%
CATAGCCCCTATCACCAGCA+TGG - chr4_3:51526188-51526207 None:intergenic 55.0%
GCCGTGACTCCCAACTCTCT+TGG + chr4_3:51525541-51525560 Msa0645990:intron 60.0%
GCCGTGACTCCCAACTCTCT+TGG + chr4_3:51525541-51525560 Msa0645990:intron 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 51524448 51526686 51524448 ID=Msa0645990;Name=Msa0645990
chr4_3 mRNA 51524448 51526686 51524448 ID=Msa0645990-mRNA-1;Parent=Msa0645990;Name=Msa0645990-mRNA-1;_AED=0.09;_eAED=0.09;_QI=135|0.33|0.5|1|0.33|0.5|4|347|131
chr4_3 exon 51524448 51524636 51524448 ID=Msa0645990-mRNA-1:exon:12540;Parent=Msa0645990-mRNA-1
chr4_3 exon 51524763 51524861 51524763 ID=Msa0645990-mRNA-1:exon:12541;Parent=Msa0645990-mRNA-1
chr4_3 exon 51524880 51524944 51524880 ID=Msa0645990-mRNA-1:exon:12542;Parent=Msa0645990-mRNA-1
chr4_3 exon 51526162 51526686 51526162 ID=Msa0645990-mRNA-1:exon:12543;Parent=Msa0645990-mRNA-1
chr4_3 five_prime_UTR 51524448 51524582 51524448 ID=Msa0645990-mRNA-1:five_prime_utr;Parent=Msa0645990-mRNA-1
chr4_3 CDS 51524583 51524636 51524583 ID=Msa0645990-mRNA-1:cds;Parent=Msa0645990-mRNA-1
chr4_3 CDS 51524763 51524861 51524763 ID=Msa0645990-mRNA-1:cds;Parent=Msa0645990-mRNA-1
chr4_3 CDS 51524880 51524944 51524880 ID=Msa0645990-mRNA-1:cds;Parent=Msa0645990-mRNA-1
chr4_3 CDS 51526162 51526339 51526162 ID=Msa0645990-mRNA-1:cds;Parent=Msa0645990-mRNA-1
chr4_3 three_prime_UTR 51526340 51526686 51526340 ID=Msa0645990-mRNA-1:three_prime_utr;Parent=Msa0645990-mRNA-1
Gene Sequence

>Msa0645990

ATGGATGTTGCAGCTGGTATTCTTGGCTTTGAGGCTGAAATAGCACAAAACAAGGTTAAGCATTTGAAGGTGTGGATATTTGAGTGTAGAGAACCAAGTCATGATGCCTTCATGTTGGGGTTGGGTGCAGCAGTGCTATTGGGACTATCACATGTGGTTGCAATTGTGTTTGTTCTCAACAGGAATTTGAGAAGGCTTCCTCCCATAGACAACTCTCAGGTTGTAGTGGCTGTTGGATTGTCCATGCTGGTGATAGGGGCTATGTCAAACAACAGGTCAAAGGATTCTTGTGGTTTCTCACACCATCACTTTCTGTCCATTGGTGGAATTTCATGTTTTGTTCATGGTCTCTTCTCTGTTATATATTACATTGTTACCACTGCTTCCATGGATTAG
Protein sequence

>Msa0645990

MDVAAGILGFEAEIAQNKVKHLKVWIFECREPSHDAFMLGLGAAVLLGLSHVVAIVFVLNRNLRRLPPIDNSQVVVAVGLSMLVIGAMSNNRSKDSCGFSHHHFLSIGGISCFVHGLFSVIYYIVTTASMD*