AlfalfaGEDB | Msa0624420

M. sativa cultivar zhongmu-4 / Msa0624420

KEGG: -
GO: -
PFAM: PF06749.15

Nr:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0624420	XP_013455526.1	97.500	160	4	0	1	160	1	160	1.71e-108	316

Swissprot:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0624420	sp\|Q9ZV57\|DEAL1_ARATH	63.750	160	58	0	1	160	1	160	1.37e-76	228

Trembl:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0624420	A0A072UIQ5	97.500	160	4	0	1	160	1	160	8.15e-109	316

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000050	Msa0624420	0.846169	2.570955e-59	-8.615850e-47
Msa0001940	Msa0624420	0.853229	2.742943e-61	-8.615850e-47
Msa0002580	Msa0624420	0.802457	5.560256e-49	-8.615850e-47
Msa0017670	Msa0624420	0.800239	1.582229e-48	-8.615850e-47
Msa0017930	Msa0624420	0.814978	1.169609e-51	-8.615850e-47
Msa0017950	Msa0624420	0.853040	3.108316e-61	-8.615850e-47
Msa0024000	Msa0624420	0.817250	3.635840e-52	-8.615850e-47
Msa0030160	Msa0624420	0.814889	1.223971e-51	-8.615850e-47
Msa0042640	Msa0624420	0.821477	3.953706e-53	-8.615850e-47
Msa0077340	Msa0624420	0.821081	4.880815e-53	-8.615850e-47
Msa0097770	Msa0624420	0.812210	4.755591e-51	-8.615850e-47
Msa0098040	Msa0624420	0.838425	2.897946e-57	-8.615850e-47
Msa0104670	Msa0624420	0.816094	6.600059e-52	-8.615850e-47
Msa0108410	Msa0624420	0.819309	1.242453e-52	-8.615850e-47
Msa0611210	Msa0624420	0.853167	2.858580e-61	-8.615850e-47
Msa0624420	Msa0640110	0.868559	5.967421e-66	-8.615850e-47
Msa0624420	Msa0645960	0.913018	1.000170e-83	-8.615850e-47
Msa0624420	Msa0645990	0.838791	2.330635e-57	-8.615850e-47
Msa0624420	Msa0651550	0.834573	2.772004e-56	-8.615850e-47
Msa0624420	Msa0674480	0.827705	1.350173e-54	-8.615850e-47
Msa0624420	Msa0674560	0.808597	2.864309e-50	-8.615850e-47
Msa0624420	Msa0678380	0.803489	3.401859e-49	-8.615850e-47
Msa0624420	Msa0729270	0.808881	2.490585e-50	-8.615850e-47
Msa0624420	Msa0733010	0.810863	9.328908e-51	-8.615850e-47
Msa0624420	Msa0792370	0.826133	3.205893e-54	-8.615850e-47
Msa0624420	Msa0795870	0.826024	3.404141e-54	-8.615850e-47
Msa0624420	Msa0803250	0.800484	1.410477e-48	-8.615850e-47
Msa0624420	Msa0826950	0.813404	2.604540e-51	-8.615850e-47
Msa0624420	Msa0829300	0.831799	1.360143e-55	-8.615850e-47
Msa0624420	Msa0829330	0.829536	4.872407e-55	-8.615850e-47
Msa0624420	Msa0833530	0.836533	8.849398e-57	-8.615850e-47
Msa0624420	Msa0833650	0.825498	4.536710e-54	-8.615850e-47
Msa0624420	Msa0855870	0.815970	7.034655e-52	-8.615850e-47
Msa0624420	Msa0875290	0.816293	5.959730e-52	-8.615850e-47
Msa0624420	Msa0902510	0.807456	5.010951e-50	-8.615850e-47
Msa0624420	Msa0967380	0.801981	6.966292e-49	-8.615850e-47
Msa0624420	Msa0967870	0.817794	2.740500e-52	-8.615850e-47
Msa0624420	Msa0979180	0.805331	1.405530e-49	-8.615850e-47
Msa0624420	Msa0980200	0.800646	1.307052e-48	-8.615850e-47
Msa0624420	Msa1023500	0.801158	1.027471e-48	-8.615850e-47
Msa0624420	Msa1039020	0.805456	1.323291e-49	-8.615850e-47
Msa0624420	Msa1044680	0.810550	1.090380e-50	-8.615850e-47
Msa0624420	Msa1072940	0.814064	1.863228e-51	-8.615850e-47
Msa0624420	Msa1089450	0.805476	1.310563e-49	-8.615850e-47
Msa0624420	Msa1132840	0.827987	1.154860e-54	-8.615850e-47
Msa0624420	Msa1144450	0.812453	4.206767e-51	-8.615850e-47
Msa0624420	Msa1145810	0.811854	5.685602e-51	-8.615850e-47
Msa0624420	Msa1155170	-0.839779	1.291612e-57	-8.615850e-47
Msa0624420	Msa1160920	0.822601	2.170861e-53	-8.615850e-47
Msa0624420	Msa1186020	0.815689	8.127634e-52	-8.615850e-47
Msa0624420	Msa1200890	0.816235	6.139519e-52	-8.615850e-47
Msa0624420	Msa1225860	-0.847242	1.309097e-59	-8.615850e-47
Msa0624420	Msa1238820	0.808666	2.768781e-50	-8.615850e-47
Msa0624420	Msa1265650	0.801879	7.311610e-49	-8.615850e-47
Msa0624420	Msa1275450	0.802305	5.975169e-49	-8.615850e-47
Msa0624420	Msa1297230	0.810046	1.400629e-50	-8.615850e-47
Msa0624420	Msa1303560	0.803693	3.085665e-49	-8.615850e-47
Msa0624420	Msa1325410	-0.809940	1.475741e-50	-8.615850e-47
Msa0624420	Msa1330420	0.830072	3.607540e-55	-8.615850e-47
Msa0624420	Msa1340200	0.812083	5.068621e-51	-8.615850e-47
Msa0624420	Msa1341840	0.821079	4.885052e-53	-8.615850e-47
Msa0624420	Msa1343430	0.829700	4.445440e-55	-8.615850e-47
Msa0624420	Msa1345810	0.806812	6.859891e-50	-8.615850e-47
Msa0624420	Msa1346560	0.811208	7.852712e-51	-8.615850e-47
Msa0624420	Msa1348090	0.802364	5.811152e-49	-8.615850e-47
Msa0624420	Msa1355450	0.824443	8.048801e-54	-8.615850e-47
Msa0624420	Msa1356600	-0.817260	3.616997e-52	-8.615850e-47
Msa0624420	Msa1372040	0.826107	3.252707e-54	-8.615850e-47
Msa0624420	Msa1382300	0.807818	4.198142e-50	-8.615850e-47
Msa0624420	Msa1392580	0.801267	9.759482e-49	-8.615850e-47
Msa0624420	Msa1405460	0.824236	9.005060e-54	-8.615850e-47
Msa0624420	Msa1415540	0.801684	8.015885e-49	-8.615850e-47
Msa0624420	Msa1425880	0.805233	1.473746e-49	-8.615850e-47
Msa0624420	Msa1427100	0.811087	8.344817e-51	-8.615850e-47
Msa0624420	Msa1444510	0.802062	6.703928e-49	-8.615850e-47
Msa0624420	Msa1452710	0.824364	8.400914e-54	-8.615850e-47
Msa0624420	Msa1461370	0.803287	3.745997e-49	-8.615850e-47
Msa0125360	Msa0624420	0.801404	9.148037e-49	-8.615850e-47
Msa0126040	Msa0624420	0.802085	6.632860e-49	-8.615850e-47
Msa0133280	Msa0624420	0.808299	3.315834e-50	-8.615850e-47
Msa0150860	Msa0624420	0.800090	1.696354e-48	-8.615850e-47
Msa0173690	Msa0624420	0.812097	5.033017e-51	-8.615850e-47
Msa0174450	Msa0624420	0.802594	5.208556e-49	-8.615850e-47
Msa0221000	Msa0624420	0.819258	1.276684e-52	-8.615850e-47
Msa0225100	Msa0624420	0.836320	1.002747e-56	-8.615850e-47
Msa0234090	Msa0624420	0.805219	1.483467e-49	-8.615850e-47
Msa0235290	Msa0624420	0.802807	4.708572e-49	-8.615850e-47
Msa0237210	Msa0624420	0.809352	1.974007e-50	-8.615850e-47
Msa0367870	Msa0624420	0.815191	1.049073e-51	-8.615850e-47
Msa0372300	Msa0624420	0.807896	4.040415e-50	-8.615850e-47
Msa0378720	Msa0624420	0.804398	2.201901e-49	-8.615850e-47
Msa0403640	Msa0624420	0.819827	9.465720e-53	-8.615850e-47
Msa0427100	Msa0624420	0.809014	2.332111e-50	-8.615850e-47
Msa0427120	Msa0624420	0.810920	9.067435e-51	-8.615850e-47
Msa0428370	Msa0624420	0.810514	1.109697e-50	-8.615850e-47
Msa0428920	Msa0624420	0.816345	5.800132e-52	-8.615850e-47
Msa0474730	Msa0624420	0.805280	1.440351e-49	-8.615850e-47
Msa0240900	Msa0624420	0.832030	1.192506e-55	-8.615850e-47
Msa0244640	Msa0624420	0.843028	1.802442e-58	-8.615850e-47
Msa0263230	Msa0624420	0.806381	8.455453e-50	-8.615850e-47
Msa0266180	Msa0624420	0.835568	1.555601e-56	-8.615850e-47
Msa0274980	Msa0624420	0.802960	4.378563e-49	-8.615850e-47
Msa0283330	Msa0624420	0.834288	3.268966e-56	-8.615850e-47
Msa0287740	Msa0624420	0.831351	1.753653e-55	-8.615850e-47
Msa0290720	Msa0624420	0.807850	4.131914e-50	-8.615850e-47
Msa0300320	Msa0624420	0.804412	2.187388e-49	-8.615850e-47
Msa0307270	Msa0624420	0.816019	6.860717e-52	-8.615850e-47
Msa0307670	Msa0624420	0.824750	6.815435e-54	-8.615850e-47
Msa0315690	Msa0624420	0.825293	5.071523e-54	-8.615850e-47
Msa0317970	Msa0624420	0.809465	1.867081e-50	-8.615850e-47
Msa0321620	Msa0624420	0.831890	1.291652e-55	-8.615850e-47
Msa0330380	Msa0624420	0.807791	4.253357e-50	-8.615850e-47
Msa0337580	Msa0624420	0.801845	7.427792e-49	-8.615850e-47
Msa0337700	Msa0624420	0.803754	2.998145e-49	-8.615850e-47
Msa0340500	Msa0624420	0.810344	1.207653e-50	-8.615850e-47
Msa0349210	Msa0624420	0.816991	4.155962e-52	-8.615850e-47
Msa0519750	Msa0624420	0.812610	3.887610e-51	-8.615850e-47
Msa0519820	Msa0624420	0.817671	2.922217e-52	-8.615850e-47
Msa0519830	Msa0624420	0.814513	1.483132e-51	-8.615850e-47
Msa0528570	Msa0624420	0.808224	3.440350e-50	-8.615850e-47
Msa0529030	Msa0624420	0.826818	2.201880e-54	-8.615850e-47
Msa0543560	Msa0624420	0.835975	1.227171e-56	-8.615850e-47
Msa0580370	Msa0624420	0.822935	1.814928e-53	-8.615850e-47
Msa0581470	Msa0624420	0.845104	4.998813e-59	-8.615850e-47
Msa0583360	Msa0624420	-0.849058	4.124457e-60	-8.615850e-47
Msa0599420	Msa0624420	0.850890	1.266802e-60	-8.615850e-47

PPI

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	q. start	q. end	s. start	s. end	e-value	bit score
Msa0624420	MtrunA17_Chr4g0023621	97.500	160	4	1	160	1	160	1.57e-112	316
Msa0624420	MtrunA17_Chr2g0323081	71.519	158	45	1	158	1	158	1.65e-80	235
Msa0624420	MtrunA17_Chr4g0049001	55.696	158	70	1	158	1	158	9.91e-68	202
Msa0624420	MtrunA17_Chr2g0280491	55.063	158	71	1	158	1	158	2.90e-59	182

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0624420	AT2G32280.1	63.750	160	58	0	1	160	1	160	1.39e-77	228
Msa0624420	AT2G32280.2	63.750	160	58	0	1	160	1	160	1.39e-77	228
Msa0624420	AT4G21310.1	63.291	158	58	0	1	158	1	158	1.81e-72	215
Msa0624420	AT4G21310.2	60.000	120	48	0	39	158	1	120	1.37e-51	161
Msa0624420	AT1G11500.1	39.375	160	90	1	6	158	6	165	1.43e-33	117
Msa0624420	AT1G11500.3	39.375	160	90	1	6	158	11	170	2.17e-33	117
Msa0624420	AT1G11500.2	42.105	114	66	0	45	158	24	137	2.14e-27	100
Msa0624420	AT1G05291.1	40.000	145	80	3	12	153	23	163	6.62e-24	92.8

Find 62 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
ATTGAAAACACAAATATTTC+TGG	0.152103	4_3:+2315895	None:intergenic
TGCGATTATGGCCCCTGTTT+TGG	0.195648	4_3:-2313738	Msa0624420:three_prime_UTR
TTCTCAACAAGTTGCGATTA+TGG	0.218709	4_3:-2313750	Msa0624420:three_prime_UTR
GATGTTGCAGCTGGTATTCT+TGG	0.255223	4_3:-2315819	Msa0624420:CDS
AATCATATTTCCCTTATGTT+AGG	0.259505	4_3:+2313788	None:intergenic
GTTGGGTGCAGCAGTGCTAT+TGG	0.296588	4_3:-2315578	Msa0624420:CDS
TGATTTACTCATTATTATCT+TGG	0.313721	4_3:-2313918	Msa0624420:three_prime_UTR
TTGGGTGCAGCAGTGCTATT+GGG	0.315421	4_3:-2315577	Msa0624420:CDS
CAATTGTGTTTGTTCTCAAC+AGG	0.330421	4_3:-2315518	Msa0624420:CDS
ATTGCAACCACCTAACAAAT+TGG	0.332978	4_3:+2315537	None:intergenic
AGTCATGATGCCTTCATGTT+GGG	0.345983	4_3:-2315601	Msa0624420:CDS
GGCAAAAGAGACCCATGTTT+AGG	0.350325	4_3:-2313831	Msa0624420:three_prime_UTR
TATATTACCAGGTTAAAATA+AGG	0.351790	4_3:+2315452	None:intergenic
GACGCCACGTGTCCCAAAAC+AGG	0.355530	4_3:+2313725	None:intergenic
GGATTGTCCATGCTGGTGAT+AGG	0.356876	4_3:-2314215	Msa0624420:CDS
CAACATCCATGATAACAATT+AGG	0.363009	4_3:+2315835	None:intergenic
GCAAAAGAGACCCATGTTTA+GGG	0.381325	4_3:-2313830	Msa0624420:three_prime_UTR
ATCATATTTCCCTTATGTTA+GGG	0.383201	4_3:+2313789	None:intergenic
CATTGTTACCACTGCTTCCA+TGG	0.385326	4_3:-2314081	Msa0624420:CDS
ATCAGGGTTGTGGTGGCTGT+TGG	0.394905	4_3:-2314236	Msa0624420:intron
CACCATCACTTTCTGTCCAT+TGG	0.397413	4_3:-2314149	Msa0624420:CDS
GATGCCTTCATGTTGGGGTT+GGG	0.408304	4_3:-2315595	Msa0624420:CDS
AAAGTACTGAGAGTTGTCTA+TGG	0.408478	4_3:+2315476	None:intergenic
AGCTGGTATTCTTGGCTTTG+AGG	0.413890	4_3:-2315811	Msa0624420:CDS
TTGTCTCCTAATTGTTATCA+TGG	0.414420	4_3:-2315841	Msa0624420:CDS
TTGAAAACACAAATATTTCT+GGG	0.422188	4_3:+2315896	None:intergenic
TGATGCCTTCATGTTGGGGT+TGG	0.426974	4_3:-2315596	Msa0624420:CDS
CGCAACTTGTTGAGAAGATA+AGG	0.431968	4_3:+2313757	None:intergenic
GATTGTCCATGCTGGTGATA+GGG	0.456865	4_3:-2314214	Msa0624420:CDS
AAAACAGGTTAAGCATTTGA+AGG	0.491275	4_3:-2315650	Msa0624420:intron
CATCACTTTCTGTCCATTGG+TGG	0.495015	4_3:-2314146	Msa0624420:CDS
TGTGTTGTTGATCAGGGTTG+TGG	0.499842	4_3:-2314246	Msa0624420:intron
GGCTGTTGGATTGTCCATGC+TGG	0.501301	4_3:-2314222	Msa0624420:CDS
TACAATATGGCTAGAGTAGG+AGG	0.513670	4_3:-2315873	Msa0624420:exon
TAGGGGCTATGTCAAACAAC+AGG	0.531371	4_3:-2314196	Msa0624420:CDS
AACATGAAGGCATCATGACT+TGG	0.534290	4_3:+2315604	None:intergenic
GTCATGATGCCTTCATGTTG+GGG	0.535583	4_3:-2315600	Msa0624420:CDS
TTCTCAACAGGAATTTGAGA+AGG	0.542952	4_3:-2315506	Msa0624420:CDS
CATATTTCCCTTATGTTAGG+GGG	0.545265	4_3:+2313791	None:intergenic
AAAACATGAAATTCCACCAA+TGG	0.549360	4_3:+2314133	None:intergenic
TCTTACAAAATACTAATCCA+TGG	0.550482	4_3:+2314064	None:intergenic
AGAGCATATTTCCCTAAACA+TGG	0.551374	4_3:+2313819	None:intergenic
CAATACAATATGGCTAGAGT+AGG	0.551922	4_3:-2315876	Msa0624420:exon
AGGTTAAGCATTTGAAGGTG+TGG	0.557434	4_3:-2315645	Msa0624420:CDS
AAGTCATGATGCCTTCATGT+TGG	0.571287	4_3:-2315602	Msa0624420:CDS
GTTATCATGGATGTTGCAGC+TGG	0.584347	4_3:-2315828	Msa0624420:CDS
GTTGTTGATCAGGGTTGTGG+TGG	0.588245	4_3:-2314243	Msa0624420:intron
AAGTACTGAGAGTTGTCTAT+GGG	0.588754	4_3:+2315477	None:intergenic
ATACTAATCCATGGAAGCAG+TGG	0.591196	4_3:+2314073	None:intergenic
ATTGTCCATGCTGGTGATAG+GGG	0.591559	4_3:-2314213	Msa0624420:CDS
TATGTCAAACAACAGGTCAA+AGG	0.592422	4_3:-2314189	Msa0624420:CDS
ACGCCACGTGTCCCAAAACA+GGG	0.593408	4_3:+2313726	None:intergenic
TCATATTTCCCTTATGTTAG+GGG	0.602228	4_3:+2313790	None:intergenic
TGCACCCAACCCCAACATGA+AGG	0.603813	4_3:+2315591	None:intergenic
TACTGAGAGTTGTCTATGGG+AGG	0.604411	4_3:+2315480	None:intergenic
AACAGGTCAAAGGATTCTTG+TGG	0.609881	4_3:-2314179	Msa0624420:CDS
GGCTGAAATAGCACAAAACA+AGG	0.619758	4_3:-2315790	Msa0624420:intron
AGTTCTAAGATTAGAAACAG+TGG	0.646953	4_3:+2315957	None:intergenic
CATAGCCCCTATCACCAGCA+TGG	0.647824	4_3:+2314208	None:intergenic
GAGCATATTTCCCTAAACAT+GGG	0.648214	4_3:+2313820	None:intergenic
CACCAATGGACAGAAAGTGA+TGG	0.662217	4_3:+2314147	None:intergenic
CGCCACGTGTCCCAAAACAG+GGG	0.699563	4_3:+2313727	None:intergenic

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!!	TTTTGAAATAATTAATAACA+AGG	-	chr4_3:2313975-2313994	Msa0624420:three_prime_UTR	10.0%
!!!	AAATAGTACTTTTTTTAATT+GGG	-	chr4_3:2315297-2315316	Msa0624420:intron	10.0%
!!!	TTTTGAAATAATTAATAACA+AGG	-	chr4_3:2313975-2313994	Msa0624420:three_prime_UTR	10.0%
!!!	AAATAGTACTTTTTTTAATT+GGG	-	chr4_3:2315297-2315316	Msa0624420:intron	10.0%
!!	TAAAATATATTCCAAAATGT+TGG	+	chr4_3:2313939-2313958	None:intergenic	15.0%
!!!	TTTTTTATTTTCAACAAAAC+AGG	-	chr4_3:2314023-2314042	Msa0624420:three_prime_UTR	15.0%
!!!	TCCAAATAAAATATTTTACA+GGG	+	chr4_3:2314382-2314401	None:intergenic	15.0%
!!!	ATCCAAATAAAATATTTTAC+AGG	+	chr4_3:2314383-2314402	None:intergenic	15.0%
!!	AAAATTAACTCAAATTAACA+GGG	+	chr4_3:2314522-2314541	None:intergenic	15.0%
!!	GCAATTAAGTAAAAAAAAAA+AGG	+	chr4_3:2314700-2314719	None:intergenic	15.0%
!!	AAAATGTTTGAATATCTAAT+CGG	-	chr4_3:2314907-2314926	Msa0624420:intron	15.0%
!!!	CAAATAGTACTTTTTTTAAT+TGG	-	chr4_3:2315296-2315315	Msa0624420:intron	15.0%
!!!	AATAGTACTTTTTTTAATTG+GGG	-	chr4_3:2315298-2315317	Msa0624420:intron	15.0%
!!	ATATTTAGTGAATGATTATT+TGG	+	chr4_3:2315405-2315424	None:intergenic	15.0%
!!	TAAAATATATTCCAAAATGT+TGG	+	chr4_3:2313939-2313958	None:intergenic	15.0%
!!!	TTTTTTATTTTCAACAAAAC+AGG	-	chr4_3:2314023-2314042	Msa0624420:three_prime_UTR	15.0%
!!!	TCCAAATAAAATATTTTACA+GGG	+	chr4_3:2314382-2314401	None:intergenic	15.0%
!!!	ATCCAAATAAAATATTTTAC+AGG	+	chr4_3:2314383-2314402	None:intergenic	15.0%
!!	AAAATTAACTCAAATTAACA+GGG	+	chr4_3:2314522-2314541	None:intergenic	15.0%
!!	GCAATTAAGTAAAAAAAAAA+AGG	+	chr4_3:2314700-2314719	None:intergenic	15.0%
!!	AAAATGTTTGAATATCTAAT+CGG	-	chr4_3:2314907-2314926	Msa0624420:intron	15.0%
!!!	CAAATAGTACTTTTTTTAAT+TGG	-	chr4_3:2315296-2315315	Msa0624420:intron	15.0%
!!!	AATAGTACTTTTTTTAATTG+GGG	-	chr4_3:2315298-2315317	Msa0624420:intron	15.0%
!!	ATATTTAGTGAATGATTATT+TGG	+	chr4_3:2315405-2315424	None:intergenic	15.0%
!!	TTGAAAACACAAATATTTCT+GGG	+	chr4_3:2313795-2313814	None:intergenic	20.0%
!!	ATTGAAAACACAAATATTTC+TGG	+	chr4_3:2313796-2313815	None:intergenic	20.0%
!!!	TTTGTGTTTTCAATACAATA+TGG	-	chr4_3:2313802-2313821	Msa0624420:three_prime_UTR	20.0%
!!	TATATTACCAGGTTAAAATA+AGG	+	chr4_3:2314239-2314258	None:intergenic	20.0%
!!!	CCAAATAAAATATTTTACAG+GGG	+	chr4_3:2314381-2314400	None:intergenic	20.0%
!!	CAAATAATCTTCAAATTACA+AGG	+	chr4_3:2314411-2314430	None:intergenic	20.0%
!!	CTTGTAATTTGAAGATTATT+TGG	-	chr4_3:2314409-2314428	Msa0624420:intron	20.0%
!!	AAATTAACTCAAATTAACAG+GGG	+	chr4_3:2314521-2314540	None:intergenic	20.0%
!!	CAAAATTAACTCAAATTAAC+AGG	+	chr4_3:2314523-2314542	None:intergenic	20.0%
!!!	CTGTTAATTTGAGTTAATTT+TGG	-	chr4_3:2314521-2314540	Msa0624420:intron	20.0%
!!!	AATTTGAAGTTTTTTGGTTT+TGG	+	chr4_3:2314596-2314615	None:intergenic	20.0%
!!!	ATCCAAAAAGAAAATTTTAC+AGG	-	chr4_3:2314627-2314646	Msa0624420:intron	20.0%
!!!	TCCAAAAAGAAAATTTTACA+GGG	-	chr4_3:2314628-2314647	Msa0624420:intron	20.0%
!!	TTGTATCATTGTGATTATTA+TGG	+	chr4_3:2314731-2314750	None:intergenic	20.0%
!!	TAATCACAATGATACAATTT+AGG	-	chr4_3:2314734-2314753	Msa0624420:intron	20.0%
!!	AAATGTTTGAATATCTAATC+GGG	-	chr4_3:2314908-2314927	Msa0624420:intron	20.0%
!!!	ATTTTAAAGAAAAGTGAAAG+TGG	-	chr4_3:2314992-2315011	Msa0624420:intron	20.0%
!!	TATTGGATCAAAATACATTT+AGG	+	chr4_3:2315345-2315364	None:intergenic	20.0%
!!	TATCAGTTACATTTAGTTAT+TGG	+	chr4_3:2315362-2315381	None:intergenic	20.0%
!!	TGATTTACTCATTATTATCT+TGG	-	chr4_3:2315770-2315789	Msa0624420:intron	20.0%
!!!	CTTTTGCCTTTTTTTAATAA+GGG	+	chr4_3:2315845-2315864	None:intergenic	20.0%
!!!	TCTTTTGCCTTTTTTTAATA+AGG	+	chr4_3:2315846-2315865	None:intergenic	20.0%
!!	TTGAAAACACAAATATTTCT+GGG	+	chr4_3:2313795-2313814	None:intergenic	20.0%
!!	ATTGAAAACACAAATATTTC+TGG	+	chr4_3:2313796-2313815	None:intergenic	20.0%
!!!	TTTGTGTTTTCAATACAATA+TGG	-	chr4_3:2313802-2313821	Msa0624420:three_prime_UTR	20.0%
!!	TATATTACCAGGTTAAAATA+AGG	+	chr4_3:2314239-2314258	None:intergenic	20.0%
!!!	CCAAATAAAATATTTTACAG+GGG	+	chr4_3:2314381-2314400	None:intergenic	20.0%
!!	CAAATAATCTTCAAATTACA+AGG	+	chr4_3:2314411-2314430	None:intergenic	20.0%
!!	CTTGTAATTTGAAGATTATT+TGG	-	chr4_3:2314409-2314428	Msa0624420:intron	20.0%
!!	AAATTAACTCAAATTAACAG+GGG	+	chr4_3:2314521-2314540	None:intergenic	20.0%
!!	CAAAATTAACTCAAATTAAC+AGG	+	chr4_3:2314523-2314542	None:intergenic	20.0%
!!!	CTGTTAATTTGAGTTAATTT+TGG	-	chr4_3:2314521-2314540	Msa0624420:intron	20.0%
!!!	AATTTGAAGTTTTTTGGTTT+TGG	+	chr4_3:2314596-2314615	None:intergenic	20.0%
!!!	ATCCAAAAAGAAAATTTTAC+AGG	-	chr4_3:2314627-2314646	Msa0624420:intron	20.0%
!!!	TCCAAAAAGAAAATTTTACA+GGG	-	chr4_3:2314628-2314647	Msa0624420:intron	20.0%
!!	TTGTATCATTGTGATTATTA+TGG	+	chr4_3:2314731-2314750	None:intergenic	20.0%
!!	TAATCACAATGATACAATTT+AGG	-	chr4_3:2314734-2314753	Msa0624420:intron	20.0%
!!	AAATGTTTGAATATCTAATC+GGG	-	chr4_3:2314908-2314927	Msa0624420:intron	20.0%
!!!	ATTTTAAAGAAAAGTGAAAG+TGG	-	chr4_3:2314992-2315011	Msa0624420:intron	20.0%
!!	TATTGGATCAAAATACATTT+AGG	+	chr4_3:2315345-2315364	None:intergenic	20.0%
!!	TATCAGTTACATTTAGTTAT+TGG	+	chr4_3:2315362-2315381	None:intergenic	20.0%
!!	TGATTTACTCATTATTATCT+TGG	-	chr4_3:2315770-2315789	Msa0624420:intron	20.0%
!!!	CTTTTGCCTTTTTTTAATAA+GGG	+	chr4_3:2315845-2315864	None:intergenic	20.0%
!!!	TCTTTTGCCTTTTTTTAATA+AGG	+	chr4_3:2315846-2315865	None:intergenic	20.0%
!!!	TAGTTTTGTTATTCCAAAAC+AGG	+	chr4_3:2314278-2314297	None:intergenic	25.0%
!	TTGGAATAACAAAACTAGTT+AGG	-	chr4_3:2314281-2314300	Msa0624420:intron	25.0%
!!	CCCCTGTAAAATATTTTATT+TGG	-	chr4_3:2314378-2314397	Msa0624420:intron	25.0%
!	AATTAACTCAAATTAACAGG+GGG	+	chr4_3:2314520-2314539	None:intergenic	25.0%
!	TGTAGAGTCAAAATTTATGA+AGG	-	chr4_3:2314569-2314588	Msa0624420:intron	25.0%
!!!	CCTTGTAATTTGAAGTTTTT+TGG	+	chr4_3:2314602-2314621	None:intergenic	25.0%
!	CCAAAAAACTTCAAATTACA+AGG	-	chr4_3:2314599-2314618	Msa0624420:intron	25.0%
!	AAAACTTCAAATTACAAGGA+CGG	-	chr4_3:2314603-2314622	Msa0624420:intron	25.0%
!!	CCAAAAAGAAAATTTTACAG+GGG	-	chr4_3:2314629-2314648	Msa0624420:intron	25.0%
!!	CAAAAAGAAAATTTTACAGG+GGG	-	chr4_3:2314630-2314649	Msa0624420:intron	25.0%
!	CGTAAATTTGGAGAAAATTT+GGG	+	chr4_3:2314802-2314821	None:intergenic	25.0%
!	ACGTAAATTTGGAGAAAATT+TGG	+	chr4_3:2314803-2314822	None:intergenic	25.0%
!	AATGTTTGAATATCTAATCG+GGG	-	chr4_3:2314909-2314928	Msa0624420:intron	25.0%
!!	TTAAGGTCAAAAGTACAATT+AGG	-	chr4_3:2315096-2315115	Msa0624420:intron	25.0%
!!!	ACAATTAGGCCATTTTAATT+CGG	-	chr4_3:2315110-2315129	Msa0624420:intron	25.0%
!	TATGTTTCCGAATAAAACTA+TGG	+	chr4_3:2315250-2315269	None:intergenic	25.0%
!	TCTTACAAAATACTAATCCA+TGG	+	chr4_3:2315627-2315646	None:intergenic	25.0%
!!	CTTTTGTAATAATTGTGCTA+AGG	-	chr4_3:2315736-2315755	Msa0624420:intron	25.0%
!!!	GCAACATTTTAAAACTTATG+GGG	+	chr4_3:2315813-2315832	None:intergenic	25.0%
!!!	CGCAACATTTTAAAACTTAT+GGG	+	chr4_3:2315814-2315833	None:intergenic	25.0%
!!!	TCGCAACATTTTAAAACTTA+TGG	+	chr4_3:2315815-2315834	None:intergenic	25.0%
!!!	GTTTTAAAATGTTGCGATTT+TGG	-	chr4_3:2315818-2315837	Msa0624420:CDS	25.0%
!	TTTGGTCCCTTATTAAAAAA+AGG	-	chr4_3:2315836-2315855	Msa0624420:CDS	25.0%
!	ATCATATTTCCCTTATGTTA+GGG	+	chr4_3:2315902-2315921	None:intergenic	25.0%
!	AATCATATTTCCCTTATGTT+AGG	+	chr4_3:2315903-2315922	None:intergenic	25.0%
!!!	TAGTTTTGTTATTCCAAAAC+AGG	+	chr4_3:2314278-2314297	None:intergenic	25.0%
!	TTGGAATAACAAAACTAGTT+AGG	-	chr4_3:2314281-2314300	Msa0624420:intron	25.0%
!!	CCCCTGTAAAATATTTTATT+TGG	-	chr4_3:2314378-2314397	Msa0624420:intron	25.0%
!	AATTAACTCAAATTAACAGG+GGG	+	chr4_3:2314520-2314539	None:intergenic	25.0%
!	TGTAGAGTCAAAATTTATGA+AGG	-	chr4_3:2314569-2314588	Msa0624420:intron	25.0%
!!!	CCTTGTAATTTGAAGTTTTT+TGG	+	chr4_3:2314602-2314621	None:intergenic	25.0%
!	CCAAAAAACTTCAAATTACA+AGG	-	chr4_3:2314599-2314618	Msa0624420:intron	25.0%
!	AAAACTTCAAATTACAAGGA+CGG	-	chr4_3:2314603-2314622	Msa0624420:intron	25.0%
!!	CCAAAAAGAAAATTTTACAG+GGG	-	chr4_3:2314629-2314648	Msa0624420:intron	25.0%
!!	CAAAAAGAAAATTTTACAGG+GGG	-	chr4_3:2314630-2314649	Msa0624420:intron	25.0%
!	CGTAAATTTGGAGAAAATTT+GGG	+	chr4_3:2314802-2314821	None:intergenic	25.0%
!	ACGTAAATTTGGAGAAAATT+TGG	+	chr4_3:2314803-2314822	None:intergenic	25.0%
!	AATGTTTGAATATCTAATCG+GGG	-	chr4_3:2314909-2314928	Msa0624420:intron	25.0%
!!	TTAAGGTCAAAAGTACAATT+AGG	-	chr4_3:2315096-2315115	Msa0624420:intron	25.0%
!!!	ACAATTAGGCCATTTTAATT+CGG	-	chr4_3:2315110-2315129	Msa0624420:intron	25.0%
!	TATGTTTCCGAATAAAACTA+TGG	+	chr4_3:2315250-2315269	None:intergenic	25.0%
!	TCTTACAAAATACTAATCCA+TGG	+	chr4_3:2315627-2315646	None:intergenic	25.0%
!!	CTTTTGTAATAATTGTGCTA+AGG	-	chr4_3:2315736-2315755	Msa0624420:intron	25.0%
!!!	GCAACATTTTAAAACTTATG+GGG	+	chr4_3:2315813-2315832	None:intergenic	25.0%
!!!	CGCAACATTTTAAAACTTAT+GGG	+	chr4_3:2315814-2315833	None:intergenic	25.0%
!!!	TCGCAACATTTTAAAACTTA+TGG	+	chr4_3:2315815-2315834	None:intergenic	25.0%
!!!	GTTTTAAAATGTTGCGATTT+TGG	-	chr4_3:2315818-2315837	Msa0624420:CDS	25.0%
!	TTTGGTCCCTTATTAAAAAA+AGG	-	chr4_3:2315836-2315855	Msa0624420:CDS	25.0%
!	ATCATATTTCCCTTATGTTA+GGG	+	chr4_3:2315902-2315921	None:intergenic	25.0%
!	AATCATATTTCCCTTATGTT+AGG	+	chr4_3:2315903-2315922	None:intergenic	25.0%
!!	AGTTCTAAGATTAGAAACAG+TGG	+	chr4_3:2313734-2313753	None:intergenic	30.0%
	TTGTCTCCTAATTGTTATCA+TGG	-	chr4_3:2313847-2313866	Msa0624420:three_prime_UTR	30.0%
	CAACATCCATGATAACAATT+AGG	+	chr4_3:2313856-2313875	None:intergenic	30.0%
!	TATGCTTGAATCCAACATTT+TGG	-	chr4_3:2313925-2313944	Msa0624420:three_prime_UTR	30.0%
	AAAACAGGTTAAGCATTTGA+AGG	-	chr4_3:2314038-2314057	Msa0624420:three_prime_UTR	30.0%
!!!	CATGTTTTAGCCAATTTGTT+AGG	-	chr4_3:2314141-2314160	Msa0624420:CDS	30.0%
!!!	TACTTTGCCTTATTTTAACC+TGG	-	chr4_3:2314229-2314248	Msa0624420:CDS	30.0%
!	ATATTTTACAGGGGAAAAAC+CGG	+	chr4_3:2314372-2314391	None:intergenic	30.0%
!	AATTTTGTCCCCTGTAATTT+AGG	-	chr4_3:2314450-2314469	Msa0624420:intron	30.0%
	CGAAATTTCCTAAATTACAG+GGG	+	chr4_3:2314461-2314480	None:intergenic	30.0%
	CCGAAATTTCCTAAATTACA+GGG	+	chr4_3:2314462-2314481	None:intergenic	30.0%
	CCCTGTAATTTAGGAAATTT+CGG	-	chr4_3:2314459-2314478	Msa0624420:intron	30.0%
	ACCGAAATTTCCTAAATTAC+AGG	+	chr4_3:2314463-2314482	None:intergenic	30.0%
	ACTCTACAAAATCGATGATA+TGG	+	chr4_3:2314557-2314576	None:intergenic	30.0%
!	CCCCTGTAAAATTTTCTTTT+TGG	+	chr4_3:2314632-2314651	None:intergenic	30.0%
	TGGAAATGACGTATATTACA+GGG	-	chr4_3:2314658-2314677	Msa0624420:intron	30.0%
	AATTTGGAGAAAATTTGGGA+TGG	+	chr4_3:2314798-2314817	None:intergenic	30.0%
	ATGTCATCTCAACGTAAATT+TGG	+	chr4_3:2314814-2314833	None:intergenic	30.0%
	GTATTAAAGAATAGCCACAT+TGG	+	chr4_3:2314868-2314887	None:intergenic	30.0%
	TTGCACAATCATGATACTTA+AGG	-	chr4_3:2315079-2315098	Msa0624420:intron	30.0%
!!!	CAATTAGGCCATTTTAATTC+GGG	-	chr4_3:2315111-2315130	Msa0624420:intron	30.0%
!!!	CTACGTACCATAGTTTTATT+CGG	-	chr4_3:2315240-2315259	Msa0624420:intron	30.0%
	GATCAACAACACAATCAAAA+GGG	+	chr4_3:2315435-2315454	None:intergenic	30.0%
	TGATCAACAACACAATCAAA+AGG	+	chr4_3:2315436-2315455	None:intergenic	30.0%
!!	TTTTGATTGTGTTGTTGATC+AGG	-	chr4_3:2315435-2315454	Msa0624420:intron	30.0%
!	TTTGATTGTGTTGTTGATCA+GGG	-	chr4_3:2315436-2315455	Msa0624420:intron	30.0%
	AAAACATGAAATTCCACCAA+TGG	+	chr4_3:2315558-2315577	None:intergenic	30.0%
!!	GGAATTTCATGTTTTGTTCA+TGG	-	chr4_3:2315563-2315582	Msa0624420:CDS	30.0%
!!!	GTTCATGTTTTTAGTGCTTT+TGG	-	chr4_3:2315669-2315688	Msa0624420:intron	30.0%
	TCATATTTCCCTTATGTTAG+GGG	+	chr4_3:2315901-2315920	None:intergenic	30.0%
!!	AGTTCTAAGATTAGAAACAG+TGG	+	chr4_3:2313734-2313753	None:intergenic	30.0%
	TTGTCTCCTAATTGTTATCA+TGG	-	chr4_3:2313847-2313866	Msa0624420:three_prime_UTR	30.0%
	CAACATCCATGATAACAATT+AGG	+	chr4_3:2313856-2313875	None:intergenic	30.0%
!	TATGCTTGAATCCAACATTT+TGG	-	chr4_3:2313925-2313944	Msa0624420:three_prime_UTR	30.0%
	AAAACAGGTTAAGCATTTGA+AGG	-	chr4_3:2314038-2314057	Msa0624420:three_prime_UTR	30.0%
!!!	CATGTTTTAGCCAATTTGTT+AGG	-	chr4_3:2314141-2314160	Msa0624420:CDS	30.0%
!!!	TACTTTGCCTTATTTTAACC+TGG	-	chr4_3:2314229-2314248	Msa0624420:CDS	30.0%
!	ATATTTTACAGGGGAAAAAC+CGG	+	chr4_3:2314372-2314391	None:intergenic	30.0%
!	AATTTTGTCCCCTGTAATTT+AGG	-	chr4_3:2314450-2314469	Msa0624420:intron	30.0%
	CGAAATTTCCTAAATTACAG+GGG	+	chr4_3:2314461-2314480	None:intergenic	30.0%
	CCGAAATTTCCTAAATTACA+GGG	+	chr4_3:2314462-2314481	None:intergenic	30.0%
	CCCTGTAATTTAGGAAATTT+CGG	-	chr4_3:2314459-2314478	Msa0624420:intron	30.0%
	ACCGAAATTTCCTAAATTAC+AGG	+	chr4_3:2314463-2314482	None:intergenic	30.0%
	ACTCTACAAAATCGATGATA+TGG	+	chr4_3:2314557-2314576	None:intergenic	30.0%
!	CCCCTGTAAAATTTTCTTTT+TGG	+	chr4_3:2314632-2314651	None:intergenic	30.0%
	TGGAAATGACGTATATTACA+GGG	-	chr4_3:2314658-2314677	Msa0624420:intron	30.0%
	AATTTGGAGAAAATTTGGGA+TGG	+	chr4_3:2314798-2314817	None:intergenic	30.0%
	ATGTCATCTCAACGTAAATT+TGG	+	chr4_3:2314814-2314833	None:intergenic	30.0%
	GTATTAAAGAATAGCCACAT+TGG	+	chr4_3:2314868-2314887	None:intergenic	30.0%
	TTGCACAATCATGATACTTA+AGG	-	chr4_3:2315079-2315098	Msa0624420:intron	30.0%
!!!	CAATTAGGCCATTTTAATTC+GGG	-	chr4_3:2315111-2315130	Msa0624420:intron	30.0%
!!!	CTACGTACCATAGTTTTATT+CGG	-	chr4_3:2315240-2315259	Msa0624420:intron	30.0%
	GATCAACAACACAATCAAAA+GGG	+	chr4_3:2315435-2315454	None:intergenic	30.0%
	TGATCAACAACACAATCAAA+AGG	+	chr4_3:2315436-2315455	None:intergenic	30.0%
!!	TTTTGATTGTGTTGTTGATC+AGG	-	chr4_3:2315435-2315454	Msa0624420:intron	30.0%
!	TTTGATTGTGTTGTTGATCA+GGG	-	chr4_3:2315436-2315455	Msa0624420:intron	30.0%
	AAAACATGAAATTCCACCAA+TGG	+	chr4_3:2315558-2315577	None:intergenic	30.0%
!!	GGAATTTCATGTTTTGTTCA+TGG	-	chr4_3:2315563-2315582	Msa0624420:CDS	30.0%
!!!	GTTCATGTTTTTAGTGCTTT+TGG	-	chr4_3:2315669-2315688	Msa0624420:intron	30.0%
	TCATATTTCCCTTATGTTAG+GGG	+	chr4_3:2315901-2315920	None:intergenic	30.0%
!	GATTTTCTTTCTGTTCTAGC+TGG	+	chr4_3:2313773-2313792	None:intergenic	35.0%
	CAATACAATATGGCTAGAGT+AGG	-	chr4_3:2313812-2313831	Msa0624420:three_prime_UTR	35.0%
!!!	GTTTTAGCCAATTTGTTAGG+TGG	-	chr4_3:2314144-2314163	Msa0624420:CDS	35.0%
	ATTGCAACCACCTAACAAAT+TGG	+	chr4_3:2314154-2314173	None:intergenic	35.0%
	CAATTGTGTTTGTTCTCAAC+AGG	-	chr4_3:2314170-2314189	Msa0624420:CDS	35.0%
	TTCTCAACAGGAATTTGAGA+AGG	-	chr4_3:2314182-2314201	Msa0624420:CDS	35.0%
!!	AAGTACTGAGAGTTGTCTAT+GGG	+	chr4_3:2314214-2314233	None:intergenic	35.0%
!!	AAAGTACTGAGAGTTGTCTA+TGG	+	chr4_3:2314215-2314234	None:intergenic	35.0%
!	TTGTTATTCCAAAACAGGAC+AGG	+	chr4_3:2314273-2314292	None:intergenic	35.0%
!!!	GTGTTTTAGCCCTGTAATAA+AGG	-	chr4_3:2314340-2314359	Msa0624420:intron	35.0%
	CGGAAATGACCTTTATTACA+GGG	+	chr4_3:2314352-2314371	None:intergenic	35.0%
	CCTGTAATAAAGGTCATTTC+CGG	-	chr4_3:2314350-2314369	Msa0624420:intron	35.0%
!	GGGGACAAAATTTTTCATGA+AGG	+	chr4_3:2314442-2314461	None:intergenic	35.0%
!	CGAAATTTGCTCAAATTGCA+GGG	+	chr4_3:2314492-2314511	None:intergenic	35.0%
	CCTGCAATTTGAGCAAATTT+CGG	-	chr4_3:2314490-2314509	Msa0624420:intron	35.0%
	ACAAAATCGATGATATGGCA+GGG	+	chr4_3:2314552-2314571	None:intergenic	35.0%
	TACAAAATCGATGATATGGC+AGG	+	chr4_3:2314553-2314572	None:intergenic	35.0%
!	AAATTTTACAGGGGGAAAAC+TGG	-	chr4_3:2314638-2314657	Msa0624420:intron	35.0%
	CTGGAAATGACGTATATTAC+AGG	-	chr4_3:2314657-2314676	Msa0624420:intron	35.0%
	GGAAATGACGTATATTACAG+GGG	-	chr4_3:2314659-2314678	Msa0624420:intron	35.0%
!	TTTGGGATGGATGGAAATAT+GGG	+	chr4_3:2314785-2314804	None:intergenic	35.0%
!	ATTTGGGATGGATGGAAATA+TGG	+	chr4_3:2314786-2314805	None:intergenic	35.0%
	TGAAAGTGGCTATGAGATTT+GGG	-	chr4_3:2315006-2315025	Msa0624420:intron	35.0%
!	ATGTCACTTCAGCGAAAATT+TGG	-	chr4_3:2315046-2315065	Msa0624420:intron	35.0%
	TCGATTCACCCGAATTAAAA+TGG	+	chr4_3:2315122-2315141	None:intergenic	35.0%
	TATGTCAAACAACAGGTCAA+AGG	-	chr4_3:2315499-2315518	Msa0624420:CDS	35.0%
	GAGCATATTTCCCTAAACAT+GGG	+	chr4_3:2315871-2315890	None:intergenic	35.0%
	AGAGCATATTTCCCTAAACA+TGG	+	chr4_3:2315872-2315891	None:intergenic	35.0%
	CATATTTCCCTTATGTTAGG+GGG	+	chr4_3:2315900-2315919	None:intergenic	35.0%
	TTCTCAACAAGTTGCGATTA+TGG	-	chr4_3:2315938-2315957	Msa0624420:five_prime_UTR	35.0%
!	GATTTTCTTTCTGTTCTAGC+TGG	+	chr4_3:2313773-2313792	None:intergenic	35.0%
	CAATACAATATGGCTAGAGT+AGG	-	chr4_3:2313812-2313831	Msa0624420:three_prime_UTR	35.0%
!!!	GTTTTAGCCAATTTGTTAGG+TGG	-	chr4_3:2314144-2314163	Msa0624420:CDS	35.0%
	ATTGCAACCACCTAACAAAT+TGG	+	chr4_3:2314154-2314173	None:intergenic	35.0%
	CAATTGTGTTTGTTCTCAAC+AGG	-	chr4_3:2314170-2314189	Msa0624420:CDS	35.0%
	TTCTCAACAGGAATTTGAGA+AGG	-	chr4_3:2314182-2314201	Msa0624420:CDS	35.0%
!!	AAGTACTGAGAGTTGTCTAT+GGG	+	chr4_3:2314214-2314233	None:intergenic	35.0%
!!	AAAGTACTGAGAGTTGTCTA+TGG	+	chr4_3:2314215-2314234	None:intergenic	35.0%
!	TTGTTATTCCAAAACAGGAC+AGG	+	chr4_3:2314273-2314292	None:intergenic	35.0%
!!!	GTGTTTTAGCCCTGTAATAA+AGG	-	chr4_3:2314340-2314359	Msa0624420:intron	35.0%
	CGGAAATGACCTTTATTACA+GGG	+	chr4_3:2314352-2314371	None:intergenic	35.0%
	CCTGTAATAAAGGTCATTTC+CGG	-	chr4_3:2314350-2314369	Msa0624420:intron	35.0%
!	GGGGACAAAATTTTTCATGA+AGG	+	chr4_3:2314442-2314461	None:intergenic	35.0%
!	CGAAATTTGCTCAAATTGCA+GGG	+	chr4_3:2314492-2314511	None:intergenic	35.0%
	CCTGCAATTTGAGCAAATTT+CGG	-	chr4_3:2314490-2314509	Msa0624420:intron	35.0%
	ACAAAATCGATGATATGGCA+GGG	+	chr4_3:2314552-2314571	None:intergenic	35.0%
	TACAAAATCGATGATATGGC+AGG	+	chr4_3:2314553-2314572	None:intergenic	35.0%
!	AAATTTTACAGGGGGAAAAC+TGG	-	chr4_3:2314638-2314657	Msa0624420:intron	35.0%
	CTGGAAATGACGTATATTAC+AGG	-	chr4_3:2314657-2314676	Msa0624420:intron	35.0%
	GGAAATGACGTATATTACAG+GGG	-	chr4_3:2314659-2314678	Msa0624420:intron	35.0%
!	TTTGGGATGGATGGAAATAT+GGG	+	chr4_3:2314785-2314804	None:intergenic	35.0%
!	ATTTGGGATGGATGGAAATA+TGG	+	chr4_3:2314786-2314805	None:intergenic	35.0%
	TGAAAGTGGCTATGAGATTT+GGG	-	chr4_3:2315006-2315025	Msa0624420:intron	35.0%
!	ATGTCACTTCAGCGAAAATT+TGG	-	chr4_3:2315046-2315065	Msa0624420:intron	35.0%
	TCGATTCACCCGAATTAAAA+TGG	+	chr4_3:2315122-2315141	None:intergenic	35.0%
	TATGTCAAACAACAGGTCAA+AGG	-	chr4_3:2315499-2315518	Msa0624420:CDS	35.0%
	GAGCATATTTCCCTAAACAT+GGG	+	chr4_3:2315871-2315890	None:intergenic	35.0%
	AGAGCATATTTCCCTAAACA+TGG	+	chr4_3:2315872-2315891	None:intergenic	35.0%
	CATATTTCCCTTATGTTAGG+GGG	+	chr4_3:2315900-2315919	None:intergenic	35.0%
	TTCTCAACAAGTTGCGATTA+TGG	-	chr4_3:2315938-2315957	Msa0624420:five_prime_UTR	35.0%
	TACAATATGGCTAGAGTAGG+AGG	-	chr4_3:2313815-2313834	Msa0624420:three_prime_UTR	40.0%
	GGCTGAAATAGCACAAAACA+AGG	-	chr4_3:2313898-2313917	Msa0624420:three_prime_UTR	40.0%
	AGGTTAAGCATTTGAAGGTG+TGG	-	chr4_3:2314043-2314062	Msa0624420:three_prime_UTR	40.0%
!!	AACATGAAGGCATCATGACT+TGG	+	chr4_3:2314087-2314106	None:intergenic	40.0%
	AAGTCATGATGCCTTCATGT+TGG	-	chr4_3:2314086-2314105	Msa0624420:CDS	40.0%
	AGTCATGATGCCTTCATGTT+GGG	-	chr4_3:2314087-2314106	Msa0624420:CDS	40.0%
	AGAGGCAGAGATATATTACC+AGG	+	chr4_3:2314250-2314269	None:intergenic	40.0%
	CCGGAAATGACCTTTATTAC+AGG	+	chr4_3:2314353-2314372	None:intergenic	40.0%
!	AATTTGCTCAAATTGCAGGG+AGG	+	chr4_3:2314489-2314508	None:intergenic	40.0%
!	CCGAAATTTGCTCAAATTGC+AGG	+	chr4_3:2314493-2314512	None:intergenic	40.0%
	CAAAATCGATGATATGGCAG+GGG	+	chr4_3:2314551-2314570	None:intergenic	40.0%
	TGGATGGAAATATGGGACAT+GGG	+	chr4_3:2314778-2314797	None:intergenic	40.0%
	ATGGATGGAAATATGGGACA+TGG	+	chr4_3:2314779-2314798	None:intergenic	40.0%
!	TGGAGAAAATTTGGGATGGA+TGG	+	chr4_3:2314794-2314813	None:intergenic	40.0%
	GTGAAAGTGGCTATGAGATT+TGG	-	chr4_3:2315005-2315024	Msa0624420:intron	40.0%
	TCACTTCAGCGAAAATTTGG+AGG	-	chr4_3:2315049-2315068	Msa0624420:intron	40.0%
	AACAGGTCAAAGGATTCTTG+TGG	-	chr4_3:2315509-2315528	Msa0624420:CDS	40.0%
	ATACTAATCCATGGAAGCAG+TGG	+	chr4_3:2315618-2315637	None:intergenic	40.0%
	GCAAAAGAGACCCATGTTTA+GGG	-	chr4_3:2315858-2315877	Msa0624420:CDS	40.0%
!	TCTTTTGACCCCCTAACATA+AGG	-	chr4_3:2315889-2315908	Msa0624420:exon	40.0%
!	CTTTTGACCCCCTAACATAA+GGG	-	chr4_3:2315890-2315909	Msa0624420:five_prime_UTR	40.0%
!!	CGCAACTTGTTGAGAAGATA+AGG	+	chr4_3:2315934-2315953	None:intergenic	40.0%
	TACAATATGGCTAGAGTAGG+AGG	-	chr4_3:2313815-2313834	Msa0624420:three_prime_UTR	40.0%
	GGCTGAAATAGCACAAAACA+AGG	-	chr4_3:2313898-2313917	Msa0624420:three_prime_UTR	40.0%
	AGGTTAAGCATTTGAAGGTG+TGG	-	chr4_3:2314043-2314062	Msa0624420:three_prime_UTR	40.0%
!!	AACATGAAGGCATCATGACT+TGG	+	chr4_3:2314087-2314106	None:intergenic	40.0%
	AAGTCATGATGCCTTCATGT+TGG	-	chr4_3:2314086-2314105	Msa0624420:CDS	40.0%
	AGTCATGATGCCTTCATGTT+GGG	-	chr4_3:2314087-2314106	Msa0624420:CDS	40.0%
	AGAGGCAGAGATATATTACC+AGG	+	chr4_3:2314250-2314269	None:intergenic	40.0%
	CCGGAAATGACCTTTATTAC+AGG	+	chr4_3:2314353-2314372	None:intergenic	40.0%
!	AATTTGCTCAAATTGCAGGG+AGG	+	chr4_3:2314489-2314508	None:intergenic	40.0%
!	CCGAAATTTGCTCAAATTGC+AGG	+	chr4_3:2314493-2314512	None:intergenic	40.0%
	CAAAATCGATGATATGGCAG+GGG	+	chr4_3:2314551-2314570	None:intergenic	40.0%
	TGGATGGAAATATGGGACAT+GGG	+	chr4_3:2314778-2314797	None:intergenic	40.0%
	ATGGATGGAAATATGGGACA+TGG	+	chr4_3:2314779-2314798	None:intergenic	40.0%
!	TGGAGAAAATTTGGGATGGA+TGG	+	chr4_3:2314794-2314813	None:intergenic	40.0%
	GTGAAAGTGGCTATGAGATT+TGG	-	chr4_3:2315005-2315024	Msa0624420:intron	40.0%
	TCACTTCAGCGAAAATTTGG+AGG	-	chr4_3:2315049-2315068	Msa0624420:intron	40.0%
	AACAGGTCAAAGGATTCTTG+TGG	-	chr4_3:2315509-2315528	Msa0624420:CDS	40.0%
	ATACTAATCCATGGAAGCAG+TGG	+	chr4_3:2315618-2315637	None:intergenic	40.0%
	GCAAAAGAGACCCATGTTTA+GGG	-	chr4_3:2315858-2315877	Msa0624420:CDS	40.0%
!	TCTTTTGACCCCCTAACATA+AGG	-	chr4_3:2315889-2315908	Msa0624420:exon	40.0%
!	CTTTTGACCCCCTAACATAA+GGG	-	chr4_3:2315890-2315909	Msa0624420:five_prime_UTR	40.0%
!!	CGCAACTTGTTGAGAAGATA+AGG	+	chr4_3:2315934-2315953	None:intergenic	40.0%
	GTTATCATGGATGTTGCAGC+TGG	-	chr4_3:2313860-2313879	Msa0624420:three_prime_UTR	45.0%
	GATGTTGCAGCTGGTATTCT+TGG	-	chr4_3:2313869-2313888	Msa0624420:three_prime_UTR	45.0%
!!	AGCTGGTATTCTTGGCTTTG+AGG	-	chr4_3:2313877-2313896	Msa0624420:three_prime_UTR	45.0%
	GTCATGATGCCTTCATGTTG+GGG	-	chr4_3:2314088-2314107	Msa0624420:CDS	45.0%
	TACTGAGAGTTGTCTATGGG+AGG	+	chr4_3:2314211-2314230	None:intergenic	45.0%
	ATTCCAAAACAGGACAGGAG+AGG	+	chr4_3:2314268-2314287	None:intergenic	45.0%
!	ATGGGGACTAGAAGCATAAG+GGG	+	chr4_3:2314760-2314779	None:intergenic	45.0%
!	CATGGGGACTAGAAGCATAA+GGG	+	chr4_3:2314761-2314780	None:intergenic	45.0%
!	ACATGGGGACTAGAAGCATA+AGG	+	chr4_3:2314762-2314781	None:intergenic	45.0%
	GGATGGAAATATGGGACATG+GGG	+	chr4_3:2314777-2314796	None:intergenic	45.0%
!	TGTGTTGTTGATCAGGGTTG+TGG	-	chr4_3:2315442-2315461	Msa0624420:intron	45.0%
	GATTGTCCATGCTGGTGATA+GGG	-	chr4_3:2315474-2315493	Msa0624420:CDS	45.0%
	ATTGTCCATGCTGGTGATAG+GGG	-	chr4_3:2315475-2315494	Msa0624420:CDS	45.0%
	TAGGGGCTATGTCAAACAAC+AGG	-	chr4_3:2315492-2315511	Msa0624420:CDS	45.0%
	CACCATCACTTTCTGTCCAT+TGG	-	chr4_3:2315539-2315558	Msa0624420:CDS	45.0%
	CACCAATGGACAGAAAGTGA+TGG	+	chr4_3:2315544-2315563	None:intergenic	45.0%
	CATCACTTTCTGTCCATTGG+TGG	-	chr4_3:2315542-2315561	Msa0624420:CDS	45.0%
	CATTGTTACCACTGCTTCCA+TGG	-	chr4_3:2315607-2315626	Msa0624420:CDS	45.0%
	GGCAAAAGAGACCCATGTTT+AGG	-	chr4_3:2315857-2315876	Msa0624420:CDS	45.0%
	GTTATCATGGATGTTGCAGC+TGG	-	chr4_3:2313860-2313879	Msa0624420:three_prime_UTR	45.0%
	GATGTTGCAGCTGGTATTCT+TGG	-	chr4_3:2313869-2313888	Msa0624420:three_prime_UTR	45.0%
!!	AGCTGGTATTCTTGGCTTTG+AGG	-	chr4_3:2313877-2313896	Msa0624420:three_prime_UTR	45.0%
	GTCATGATGCCTTCATGTTG+GGG	-	chr4_3:2314088-2314107	Msa0624420:CDS	45.0%
	TACTGAGAGTTGTCTATGGG+AGG	+	chr4_3:2314211-2314230	None:intergenic	45.0%
	ATTCCAAAACAGGACAGGAG+AGG	+	chr4_3:2314268-2314287	None:intergenic	45.0%
!	ATGGGGACTAGAAGCATAAG+GGG	+	chr4_3:2314760-2314779	None:intergenic	45.0%
!	CATGGGGACTAGAAGCATAA+GGG	+	chr4_3:2314761-2314780	None:intergenic	45.0%
!	ACATGGGGACTAGAAGCATA+AGG	+	chr4_3:2314762-2314781	None:intergenic	45.0%
	GGATGGAAATATGGGACATG+GGG	+	chr4_3:2314777-2314796	None:intergenic	45.0%
!	TGTGTTGTTGATCAGGGTTG+TGG	-	chr4_3:2315442-2315461	Msa0624420:intron	45.0%
	GATTGTCCATGCTGGTGATA+GGG	-	chr4_3:2315474-2315493	Msa0624420:CDS	45.0%
	ATTGTCCATGCTGGTGATAG+GGG	-	chr4_3:2315475-2315494	Msa0624420:CDS	45.0%
	TAGGGGCTATGTCAAACAAC+AGG	-	chr4_3:2315492-2315511	Msa0624420:CDS	45.0%
	CACCATCACTTTCTGTCCAT+TGG	-	chr4_3:2315539-2315558	Msa0624420:CDS	45.0%
	CACCAATGGACAGAAAGTGA+TGG	+	chr4_3:2315544-2315563	None:intergenic	45.0%
	CATCACTTTCTGTCCATTGG+TGG	-	chr4_3:2315542-2315561	Msa0624420:CDS	45.0%
	CATTGTTACCACTGCTTCCA+TGG	-	chr4_3:2315607-2315626	Msa0624420:CDS	45.0%
	GGCAAAAGAGACCCATGTTT+AGG	-	chr4_3:2315857-2315876	Msa0624420:CDS	45.0%
	TGATGCCTTCATGTTGGGGT+TGG	-	chr4_3:2314092-2314111	Msa0624420:CDS	50.0%
	GATGCCTTCATGTTGGGGTT+GGG	-	chr4_3:2314093-2314112	Msa0624420:CDS	50.0%
!	TTGGGTGCAGCAGTGCTATT+GGG	-	chr4_3:2314111-2314130	Msa0624420:CDS	50.0%
	CCACATTGGCCAAGAGAGTT+GGG	+	chr4_3:2314854-2314873	None:intergenic	50.0%
	GTTGTTGATCAGGGTTGTGG+TGG	-	chr4_3:2315445-2315464	Msa0624420:intron	50.0%
	GGATTGTCCATGCTGGTGAT+AGG	-	chr4_3:2315473-2315492	Msa0624420:CDS	50.0%
!	TGCGATTATGGCCCCTGTTT+TGG	-	chr4_3:2315950-2315969	Msa0624420:five_prime_UTR	50.0%
!	GCGATTATGGCCCCTGTTTT+GGG	-	chr4_3:2315951-2315970	Msa0624420:five_prime_UTR	50.0%
	TGATGCCTTCATGTTGGGGT+TGG	-	chr4_3:2314092-2314111	Msa0624420:CDS	50.0%
	GATGCCTTCATGTTGGGGTT+GGG	-	chr4_3:2314093-2314112	Msa0624420:CDS	50.0%
!	TTGGGTGCAGCAGTGCTATT+GGG	-	chr4_3:2314111-2314130	Msa0624420:CDS	50.0%
	CCACATTGGCCAAGAGAGTT+GGG	+	chr4_3:2314854-2314873	None:intergenic	50.0%
	GTTGTTGATCAGGGTTGTGG+TGG	-	chr4_3:2315445-2315464	Msa0624420:intron	50.0%
	GGATTGTCCATGCTGGTGAT+AGG	-	chr4_3:2315473-2315492	Msa0624420:CDS	50.0%
!	TGCGATTATGGCCCCTGTTT+TGG	-	chr4_3:2315950-2315969	Msa0624420:five_prime_UTR	50.0%
!	GCGATTATGGCCCCTGTTTT+GGG	-	chr4_3:2315951-2315970	Msa0624420:five_prime_UTR	50.0%
	TGCACCCAACCCCAACATGA+AGG	+	chr4_3:2314100-2314119	None:intergenic	55.0%
	GTTGGGTGCAGCAGTGCTAT+TGG	-	chr4_3:2314110-2314129	Msa0624420:CDS	55.0%
!	CTGCCTCTCCTGTCCTGTTT+TGG	-	chr4_3:2314262-2314281	Msa0624420:intron	55.0%
	GCCAAGAGAGTTGGGAGTCA+CGG	+	chr4_3:2314846-2314865	None:intergenic	55.0%
	CCCAACTCTCTTGGCCAATG+TGG	-	chr4_3:2314851-2314870	Msa0624420:intron	55.0%
	GCCACATTGGCCAAGAGAGT+TGG	+	chr4_3:2314855-2314874	None:intergenic	55.0%
	ATCAGGGTTGTGGTGGCTGT+TGG	-	chr4_3:2315452-2315471	Msa0624420:intron	55.0%
	GGCTGTTGGATTGTCCATGC+TGG	-	chr4_3:2315466-2315485	Msa0624420:CDS	55.0%
	CATAGCCCCTATCACCAGCA+TGG	+	chr4_3:2315483-2315502	None:intergenic	55.0%
	TGCACCCAACCCCAACATGA+AGG	+	chr4_3:2314100-2314119	None:intergenic	55.0%
	GTTGGGTGCAGCAGTGCTAT+TGG	-	chr4_3:2314110-2314129	Msa0624420:CDS	55.0%
!	CTGCCTCTCCTGTCCTGTTT+TGG	-	chr4_3:2314262-2314281	Msa0624420:intron	55.0%
	GCCAAGAGAGTTGGGAGTCA+CGG	+	chr4_3:2314846-2314865	None:intergenic	55.0%
	CCCAACTCTCTTGGCCAATG+TGG	-	chr4_3:2314851-2314870	Msa0624420:intron	55.0%
	GCCACATTGGCCAAGAGAGT+TGG	+	chr4_3:2314855-2314874	None:intergenic	55.0%
	ATCAGGGTTGTGGTGGCTGT+TGG	-	chr4_3:2315452-2315471	Msa0624420:intron	55.0%
	GGCTGTTGGATTGTCCATGC+TGG	-	chr4_3:2315466-2315485	Msa0624420:CDS	55.0%
	CATAGCCCCTATCACCAGCA+TGG	+	chr4_3:2315483-2315502	None:intergenic	55.0%
	GCCGTGACTCCCAACTCTCT+TGG	-	chr4_3:2314842-2314861	Msa0624420:intron	60.0%
	GCCGTGACTCCCAACTCTCT+TGG	-	chr4_3:2314842-2314861	Msa0624420:intron	60.0%

Chromosome	Type	Strat	End	Strand	Name
chr4_3	gene	2313730	2315980	2313730	ID=Msa0624420;Name=Msa0624420
chr4_3	mRNA	2313730	2315980	2313730	ID=Msa0624420-mRNA-1;Parent=Msa0624420;Name=Msa0624420-mRNA-1;_AED=0.04;_eAED=0.04;_QI=91\|1\|1\|1\|1\|1\|3\|346\|160
chr4_3	exon	2313730	2314253	2313730	ID=Msa0624420-mRNA-1:exon:629;Parent=Msa0624420-mRNA-1
chr4_3	exon	2315460	2315665	2315460	ID=Msa0624420-mRNA-1:exon:628;Parent=Msa0624420-mRNA-1
chr4_3	exon	2315791	2315980	2315791	ID=Msa0624420-mRNA-1:exon:627;Parent=Msa0624420-mRNA-1
chr4_3	five_prime_UTR	2315890	2315980	2315890	ID=Msa0624420-mRNA-1:five_prime_utr;Parent=Msa0624420-mRNA-1
chr4_3	CDS	2315791	2315889	2315791	ID=Msa0624420-mRNA-1:cds;Parent=Msa0624420-mRNA-1
chr4_3	CDS	2315460	2315665	2315460	ID=Msa0624420-mRNA-1:cds;Parent=Msa0624420-mRNA-1
chr4_3	CDS	2314076	2314253	2314076	ID=Msa0624420-mRNA-1:cds;Parent=Msa0624420-mRNA-1
chr4_3	three_prime_UTR	2313730	2314075	2313730	ID=Msa0624420-mRNA-1:three_prime_utr;Parent=Msa0624420-mRNA-1

Gene Sequence

>Msa0624420

ATGGCTAGAGTAGGAGGCATTGTTGTTTGTCTCCTAATTGTTATCATGGATGTTGCAGCTGGTATTCTTGGCTTTGAGGCTGAAATAGCACAAAACAAGGTTAAGCATTTGAAGGTGTGGATATTTGAGTGTAGAGAACCAAGTCATGATGCCTTCATGTTGGGGTTGGGTGCAGCAGTGCTATTGGGACTATCACATGTTTTAGCCAATTTGTTAGGTGGTTGCAATTGTGTTTGTTCTCAACAGGAATTTGAGAAGGCTTCCTCCCATAGACAACTCTCAGTACTTTGCCTTATTTTAACCTGGGTTGTGGTGGCTGTTGGATTGTCCATGCTGGTGATAGGGGCTATGTCAAACAACAGGTCAAAGGATTCTTGTGGTTTCTCACACCATCACTTTCTGTCCATTGGTGGAATTTCATGTTTTGTTCATGGTCTCTTCTCTGTTATATATTACATTGTTACCACTGCTTCCATGGATTAG

Protein sequence

>Msa0624420

MARVGGIVVCLLIVIMDVAAGILGFEAEIAQNKVKHLKVWIFECREPSHDAFMLGLGAAVLLGLSHVLANLLGGCNCVCSQQEFEKASSHRQLSVLCLILTWVVVAVGLSMLVIGAMSNNRSKDSCGFSHHHFLSIGGISCFVHGLFSVIYYIVTTASMD*