Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349210 | XP_003598516.1 | 96.131 | 336 | 4 | 3 | 1 | 334 | 1 | 329 | 0.0 | 656 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349210 | sp|Q94CK9|LRP1_ARATH | 42.604 | 338 | 155 | 14 | 1 | 329 | 1 | 308 | 3.01e-58 | 193 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349210 | G7J0K6 | 96.131 | 336 | 4 | 3 | 1 | 334 | 1 | 329 | 0.0 | 656 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0349210 | TF | SRS |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0349210 | 0.839309 | 1.711804e-57 | -8.615850e-47 |
| Msa0001940 | Msa0349210 | 0.812330 | 4.476473e-51 | -8.615850e-47 |
| Msa0017930 | Msa0349210 | 0.803493 | 3.395630e-49 | -8.615850e-47 |
| Msa0017950 | Msa0349210 | 0.819372 | 1.202605e-52 | -8.615850e-47 |
| Msa0038290 | Msa0349210 | -0.836681 | 8.114464e-57 | -8.615850e-47 |
| Msa0081020 | Msa0349210 | 0.834291 | 3.263787e-56 | -8.615850e-47 |
| Msa0081390 | Msa0349210 | 0.808643 | 2.800135e-50 | -8.615850e-47 |
| Msa0098040 | Msa0349210 | 0.835278 | 1.841162e-56 | -8.615850e-47 |
| Msa0132630 | Msa0349210 | -0.834246 | 3.348166e-56 | -8.615850e-47 |
| Msa0168310 | Msa0349210 | 0.803133 | 4.031400e-49 | -8.615850e-47 |
| Msa0173690 | Msa0349210 | 0.810315 | 1.225182e-50 | -8.615850e-47 |
| Msa0225100 | Msa0349210 | 0.817502 | 3.190007e-52 | -8.615850e-47 |
| Msa0231200 | Msa0349210 | 0.813483 | 2.501747e-51 | -8.615850e-47 |
| Msa0237420 | Msa0349210 | 0.817769 | 2.776786e-52 | -8.615850e-47 |
| Msa0240900 | Msa0349210 | 0.805330 | 1.406024e-49 | -8.615850e-47 |
| Msa0244640 | Msa0349210 | 0.840644 | 7.679947e-58 | -8.615850e-47 |
| Msa0266180 | Msa0349210 | 0.814390 | 1.579048e-51 | -8.615850e-47 |
| Msa0269970 | Msa0349210 | 0.850594 | 1.535554e-60 | -8.615850e-47 |
| Msa0283330 | Msa0349210 | 0.843608 | 1.262327e-58 | -8.615850e-47 |
| Msa0287740 | Msa0349210 | 0.819258 | 1.276488e-52 | -8.615850e-47 |
| Msa0287870 | Msa0349210 | 0.808143 | 3.580167e-50 | -8.615850e-47 |
| Msa0307670 | Msa0349210 | 0.831085 | 2.038438e-55 | -8.615850e-47 |
| Msa0321620 | Msa0349210 | 0.825111 | 5.600926e-54 | -8.615850e-47 |
| Msa0323270 | Msa0349210 | 0.815539 | 8.778223e-52 | -8.615850e-47 |
| Msa0349210 | Msa0379790 | -0.808559 | 2.917660e-50 | -8.615850e-47 |
| Msa0349210 | Msa0519750 | 0.841377 | 4.929360e-58 | -8.615850e-47 |
| Msa0349210 | Msa0519830 | 0.832550 | 8.868301e-56 | -8.615850e-47 |
| Msa0349210 | Msa0529030 | 0.819918 | 9.021171e-53 | -8.615850e-47 |
| Msa0349210 | Msa0543560 | 0.807418 | 5.104173e-50 | -8.615850e-47 |
| Msa0349210 | Msa0574050 | 0.809296 | 2.030014e-50 | -8.615850e-47 |
| Msa0349210 | Msa0576790 | 0.800525 | 1.383309e-48 | -8.615850e-47 |
| Msa0349210 | Msa0581470 | 0.813026 | 3.152865e-51 | -8.615850e-47 |
| Msa0349210 | Msa0583360 | -0.804090 | 2.552019e-49 | -8.615850e-47 |
| Msa0349210 | Msa0611210 | 0.825044 | 5.808186e-54 | -8.615850e-47 |
| Msa0349210 | Msa0624420 | 0.816991 | 4.155962e-52 | -8.615850e-47 |
| Msa0349210 | Msa0645990 | 0.800354 | 1.499039e-48 | -8.615850e-47 |
| Msa0349210 | Msa0651550 | 0.802112 | 6.547203e-49 | -8.615850e-47 |
| Msa0349210 | Msa0674480 | 0.820820 | 5.603936e-53 | -8.615850e-47 |
| Msa0349210 | Msa0678380 | 0.822495 | 2.297600e-53 | -8.615850e-47 |
| Msa0349210 | Msa0706230 | 0.816379 | 5.701354e-52 | -8.615850e-47 |
| Msa0349210 | Msa0741220 | 0.808672 | 2.761071e-50 | -8.615850e-47 |
| Msa0349210 | Msa0741650 | 0.823915 | 1.070884e-53 | -8.615850e-47 |
| Msa0349210 | Msa0756490 | 0.800373 | 1.485490e-48 | -8.615850e-47 |
| Msa0349210 | Msa0792370 | 0.826726 | 2.315667e-54 | -8.615850e-47 |
| Msa0349210 | Msa0799970 | 0.800914 | 1.152282e-48 | -8.615850e-47 |
| Msa0349210 | Msa0826950 | 0.857319 | 1.769447e-62 | -8.615850e-47 |
| Msa0349210 | Msa0829300 | 0.841944 | 3.493360e-58 | -8.615850e-47 |
| Msa0349210 | Msa0829330 | 0.838011 | 3.704922e-57 | -8.615850e-47 |
| Msa0349210 | Msa0833530 | 0.826397 | 2.774945e-54 | -8.615850e-47 |
| Msa0349210 | Msa0835490 | 0.804884 | 1.743699e-49 | -8.615850e-47 |
| Msa0349210 | Msa0881360 | 0.803879 | 2.823104e-49 | -8.615850e-47 |
| Msa0349210 | Msa0903310 | 0.817110 | 3.908447e-52 | -8.615850e-47 |
| Msa0349210 | Msa0935820 | 0.813376 | 2.641070e-51 | -8.615850e-47 |
| Msa0349210 | Msa0967870 | 0.807179 | 5.737035e-50 | -8.615850e-47 |
| Msa0349210 | Msa1021590 | 0.826489 | 2.637665e-54 | -8.615850e-47 |
| Msa0349210 | Msa1023500 | 0.802980 | 4.335447e-49 | -8.615850e-47 |
| Msa0349210 | Msa1044680 | 0.861021 | 1.374390e-63 | -8.615850e-47 |
| Msa0349210 | Msa1101090 | 0.812376 | 4.374573e-51 | -8.615850e-47 |
| Msa0349210 | Msa1105640 | 0.847302 | 1.260628e-59 | -8.615850e-47 |
| Msa0349210 | Msa1148960 | 0.825406 | 4.770745e-54 | -8.615850e-47 |
| Msa0349210 | Msa1205280 | 0.814851 | 1.247880e-51 | -8.615850e-47 |
| Msa0349210 | Msa1214860 | 0.828943 | 6.788301e-55 | -8.615850e-47 |
| Msa0349210 | Msa1225860 | -0.801068 | 1.071705e-48 | -8.615850e-47 |
| Msa0349210 | Msa1300830 | 0.830445 | 2.924552e-55 | -8.615850e-47 |
| Msa0349210 | Msa1325410 | -0.814457 | 1.525961e-51 | -8.615850e-47 |
| Msa0349210 | Msa1331830 | 0.812962 | 3.256316e-51 | -8.615850e-47 |
| Msa0349210 | Msa1343430 | 0.802333 | 5.897753e-49 | -8.615850e-47 |
| Msa0349210 | Msa1345100 | 0.835142 | 1.993493e-56 | -8.615850e-47 |
| Msa0349210 | Msa1347310 | 0.816894 | 4.370268e-52 | -8.615850e-47 |
| Msa0349210 | Msa1356600 | -0.814127 | 1.804535e-51 | -8.615850e-47 |
| Msa0349210 | Msa1372040 | 0.825930 | 3.583122e-54 | -8.615850e-47 |
| Msa0349210 | Msa1405460 | 0.818006 | 2.455509e-52 | -8.615850e-47 |
| Msa0349210 | Msa1414640 | 0.825071 | 5.724814e-54 | -8.615850e-47 |
| Msa0349210 | Msa1417440 | -0.809408 | 1.920391e-50 | -8.615850e-47 |
| Msa0349210 | Msa1427100 | 0.834486 | 2.914883e-56 | -8.615850e-47 |
| Msa0349210 | Msa1442920 | 0.820580 | 6.362549e-53 | -8.615850e-47 |
| Msa0349210 | Msa1452710 | 0.803807 | 2.921992e-49 | -8.615850e-47 |
| Msa0349210 | Msa1458680 | 0.802444 | 5.595185e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349210 | MtrunA17_Chr3g0082511 | 96.131 | 336 | 4 | 3 | 1 | 334 | 1 | 329 | 0.0 | 656 |
| Msa0349210 | MtrunA17_Chr8g0353111 | 60.116 | 346 | 105 | 14 | 1 | 333 | 1 | 326 | 2.10e-119 | 347 |
| Msa0349210 | MtrunA17_Chr5g0441921 | 41.727 | 278 | 133 | 5 | 43 | 306 | 29 | 291 | 7.26e-57 | 187 |
| Msa0349210 | MtrunA17_Chr8g0372461 | 41.509 | 159 | 63 | 5 | 134 | 291 | 121 | 250 | 1.71e-32 | 123 |
| Msa0349210 | MtrunA17_Chr1g0155791 | 39.521 | 167 | 87 | 3 | 134 | 299 | 122 | 275 | 6.21e-31 | 119 |
| Msa0349210 | MtrunA17_Chr5g0404781 | 42.073 | 164 | 81 | 3 | 134 | 293 | 100 | 253 | 4.15e-30 | 117 |
| Msa0349210 | MtrunA17_Chr3g0142171 | 39.752 | 161 | 74 | 6 | 134 | 291 | 86 | 226 | 1.98e-27 | 108 |
| Msa0349210 | MtrunA17_Chr4g0035591 | 35.000 | 160 | 67 | 4 | 134 | 293 | 20 | 142 | 9.20e-23 | 94.4 |
| Msa0349210 | MtrunA17_Chr0c01g0489181 | 57.143 | 35 | 15 | 0 | 134 | 168 | 67 | 101 | 7.11e-12 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0349210 | AT5G12330.1 | 42.604 | 338 | 155 | 14 | 1 | 329 | 1 | 308 | 3.06e-59 | 193 |
| Msa0349210 | AT5G12330.2 | 42.604 | 338 | 155 | 14 | 1 | 329 | 1 | 308 | 3.06e-59 | 193 |
| Msa0349210 | AT5G12330.4 | 42.604 | 338 | 155 | 14 | 1 | 329 | 88 | 395 | 9.88e-59 | 194 |
| Msa0349210 | AT3G54430.1 | 44.809 | 183 | 69 | 4 | 122 | 303 | 31 | 182 | 4.82e-43 | 147 |
| Msa0349210 | AT3G51060.1 | 43.949 | 157 | 69 | 4 | 134 | 289 | 144 | 282 | 7.31e-35 | 130 |
| Msa0349210 | AT5G66350.3 | 42.138 | 159 | 73 | 3 | 134 | 291 | 120 | 260 | 1.27e-33 | 126 |
| Msa0349210 | AT5G66350.2 | 42.138 | 159 | 73 | 3 | 134 | 291 | 120 | 260 | 1.55e-33 | 126 |
| Msa0349210 | AT5G66350.1 | 42.138 | 159 | 73 | 3 | 134 | 291 | 120 | 260 | 1.90e-33 | 126 |
| Msa0349210 | AT1G75520.1 | 38.750 | 160 | 94 | 2 | 134 | 291 | 125 | 282 | 7.92e-32 | 122 |
| Msa0349210 | AT1G19790.2 | 36.612 | 183 | 59 | 3 | 134 | 291 | 119 | 269 | 1.10e-31 | 122 |
| Msa0349210 | AT1G19790.1 | 36.612 | 183 | 59 | 3 | 134 | 291 | 119 | 269 | 1.10e-31 | 122 |
| Msa0349210 | AT4G36260.1 | 38.650 | 163 | 83 | 4 | 134 | 291 | 94 | 244 | 1.05e-29 | 116 |
| Msa0349210 | AT2G21400.2 | 36.646 | 161 | 74 | 3 | 132 | 292 | 8 | 140 | 3.67e-29 | 111 |
| Msa0349210 | AT2G21400.4 | 36.646 | 161 | 74 | 3 | 132 | 292 | 7 | 139 | 4.41e-29 | 110 |
| Msa0349210 | AT2G18120.2 | 38.272 | 162 | 73 | 3 | 134 | 295 | 72 | 206 | 2.15e-28 | 110 |
| Msa0349210 | AT2G18120.1 | 38.182 | 165 | 71 | 4 | 134 | 295 | 72 | 208 | 3.57e-28 | 109 |
| Msa0349210 | AT2G21400.1 | 37.267 | 161 | 58 | 3 | 132 | 292 | 7 | 124 | 7.19e-28 | 107 |
| Msa0349210 | AT2G21400.3 | 37.267 | 161 | 58 | 3 | 132 | 292 | 8 | 125 | 7.54e-28 | 107 |
| Msa0349210 | AT5G12330.3 | 39.344 | 244 | 111 | 12 | 1 | 237 | 1 | 214 | 1.86e-27 | 107 |
| Msa0349210 | AT5G33210.2 | 65.306 | 49 | 17 | 0 | 134 | 182 | 17 | 65 | 1.72e-18 | 80.1 |
| Msa0349210 | AT5G33210.1 | 50.617 | 81 | 39 | 1 | 103 | 182 | 20 | 100 | 1.00e-17 | 80.1 |
Find 98 sgRNAs with CRISPR-Local
Find 401 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGCAGACTTAAAGCTTAA+TGG | 0.207429 | 3_1:-12584845 | Msa0349210:three_prime_UTR |
| AAGTCTGCAAGTAAGCAATT+AGG | 0.229920 | 3_1:+12584857 | None:intergenic |
| TACACAATTAAAGTGGAATA+TGG | 0.245388 | 3_1:+12584897 | None:intergenic |
| GGTGATGGTGAGGGTTGTTC+TGG | 0.272937 | 3_1:-12589951 | Msa0349210:CDS |
| TTTGTCAAGATTGTGGTAAT+AGG | 0.301923 | 3_1:-12590127 | Msa0349210:CDS |
| TCTGGTGTTAAGAGACAAAA+AGG | 0.305575 | 3_1:-12589933 | Msa0349210:CDS |
| TCTTTGCTGGTTCATGAAAC+TGG | 0.307985 | 3_1:+12584958 | None:intergenic |
| AGCCATGAAGATTGCTTATC+AGG | 0.309787 | 3_1:-12588731 | Msa0349210:intron |
| TTTGGAAGATTCACTACTTC+AGG | 0.330560 | 3_1:+12590239 | None:intergenic |
| TTCATGCACCAGCTGTATTC+AGG | 0.332427 | 3_1:-12588989 | Msa0349210:CDS |
| GCAGGGTAAGCATTATTGTT+TGG | 0.337600 | 3_1:+12588765 | None:intergenic |
| CTTGTTCCAATGAGTATGTT+AGG | 0.338078 | 3_1:-12590533 | Msa0349210:exon |
| AGTCTGCAAGTAAGCAATTA+GGG | 0.338993 | 3_1:+12584858 | None:intergenic |
| ATAAAACGTCCATTCTTTGC+TGG | 0.349849 | 3_1:+12584945 | None:intergenic |
| CTCTATGATCATGGTGTTGA+TGG | 0.354571 | 3_1:-12588876 | Msa0349210:CDS |
| CATGTGAAATGGGTTGGTTT+TGG | 0.355416 | 3_1:+12590435 | None:intergenic |
| GCTTCCTTAAGTGTTGGTTT+TGG | 0.360178 | 3_1:-12590380 | Msa0349210:CDS |
| GAGCTAGTAGCAAAACTCTT+TGG | 0.380098 | 3_1:+12589846 | None:intergenic |
| TAAATTTCATGTATTAGATC+AGG | 0.385549 | 3_1:-12584813 | Msa0349210:three_prime_UTR |
| TGAAGATGAATTTGCTTACT+TGG | 0.385662 | 3_1:-12588937 | Msa0349210:CDS |
| AGAAGAGAATCATGGCAAAA+TGG | 0.391361 | 3_1:-12590198 | Msa0349210:CDS |
| TGAATTGTGATCATGTGAAA+TGG | 0.393792 | 3_1:+12590424 | None:intergenic |
| TGCCAATAGCAGTTACTCTA+TGG | 0.398017 | 3_1:+12588964 | None:intergenic |
| GTGGAGATGTTTGCCGGTGG+TGG | 0.398827 | 3_1:-12589987 | Msa0349210:CDS |
| TTGTCAAGATTGTGGTAATA+GGG | 0.399150 | 3_1:-12590126 | Msa0349210:CDS |
| GAGATGTTTGCCGGTGGTGG+TGG | 0.399774 | 3_1:-12589984 | Msa0349210:CDS |
| ATGTTTGCCGGTGGTGGTGG+TGG | 0.402912 | 3_1:-12589981 | Msa0349210:CDS |
| TTGGCTACAGTTCATATTAG+TGG | 0.406244 | 3_1:-12588918 | Msa0349210:CDS |
| TTGTGTTTCAGAACTTCAAT+TGG | 0.409173 | 3_1:-12588838 | Msa0349210:CDS |
| AGGGAGGTGGAGATGTTTGC+CGG | 0.419024 | 3_1:-12589993 | Msa0349210:CDS |
| TTTGCCGGTGGTGGTGGTGG+TGG | 0.424345 | 3_1:-12589978 | Msa0349210:CDS |
| GTACTCATTTGAAGAGTACT+TGG | 0.429685 | 3_1:-12590040 | Msa0349210:CDS |
| TGGTGGTGGTGGTGATGGTG+AGG | 0.431191 | 3_1:-12589961 | Msa0349210:CDS |
| GATTCCTTCGACACGTCGTC+GGG | 0.433608 | 3_1:-12590018 | Msa0349210:CDS |
| AAGATGTAGGACTTGTTGTA+AGG | 0.436244 | 3_1:-12590081 | Msa0349210:CDS |
| GGTGGTGGTGGTGATGGTGA+GGG | 0.436973 | 3_1:-12589960 | Msa0349210:CDS |
| GAATTGTGATCATGTGAAAT+GGG | 0.440257 | 3_1:+12590425 | None:intergenic |
| AAAGGGTTTCTCTATGATCA+TGG | 0.441459 | 3_1:-12588885 | Msa0349210:CDS |
| ATTTATATAGTGAATGGGAA+TGG | 0.444558 | 3_1:+12590627 | None:intergenic |
| CATGGCTAGCTAGCAGAAGC+AGG | 0.449543 | 3_1:+12588747 | None:intergenic |
| TACCTGATAAGCAATCTTCA+TGG | 0.450585 | 3_1:+12588729 | None:intergenic |
| TGCCATAGAGTAACTGCTAT+TGG | 0.452645 | 3_1:-12588966 | Msa0349210:CDS |
| GGTGAATGTTCTTCTGCAAT+TGG | 0.456180 | 3_1:-12588792 | Msa0349210:CDS |
| GGTTTCAAAGAGGGTTTACC+AGG | 0.457703 | 3_1:-12589017 | Msa0349210:CDS |
| TCTCATAGCTCTAACTCTAA+TGG | 0.458294 | 3_1:-12589876 | Msa0349210:CDS |
| TCATGGCAAAATGGCTATGA+TGG | 0.462755 | 3_1:-12590189 | Msa0349210:CDS |
| TTTATATAGTGAATGGGAAT+GGG | 0.469207 | 3_1:+12590628 | None:intergenic |
| CAAGTAAGCAATTAGGGACT+GGG | 0.472180 | 3_1:+12584864 | None:intergenic |
| CTTCGACACGTCGTCGGGAA+AGG | 0.472475 | 3_1:-12590013 | Msa0349210:CDS |
| TGTTGTTGTTGTTGCATGCA+AGG | 0.473675 | 3_1:+12590332 | None:intergenic |
| CTAAGACCTAACATACTCAT+TGG | 0.474174 | 3_1:+12590527 | None:intergenic |
| AGTTCTGAAACACAAGGCAT+TGG | 0.476027 | 3_1:+12588846 | None:intergenic |
| TTGTTGATTTATATAGTGAA+TGG | 0.477814 | 3_1:+12590621 | None:intergenic |
| AGTGAAGAAAATGGTGTGTA+TGG | 0.483753 | 3_1:-12590164 | Msa0349210:CDS |
| ATTAATTTACACAATTAAAG+TGG | 0.485072 | 3_1:+12584890 | None:intergenic |
| TTCGACACGTCGTCGGGAAA+GGG | 0.486782 | 3_1:-12590012 | Msa0349210:CDS |
| TCTTCAGCTTCCTTAAGTGT+TGG | 0.487711 | 3_1:-12590386 | Msa0349210:CDS |
| GCAAGTAAGCAATTAGGGAC+TGG | 0.497774 | 3_1:+12584863 | None:intergenic |
| TGTGTTTCAGAACTTCAATT+GGG | 0.498389 | 3_1:-12588837 | Msa0349210:CDS |
| ACGTCGTCGGGAAAGGGAGG+TGG | 0.501203 | 3_1:-12590006 | Msa0349210:CDS |
| CTACTTCAGGACACATCCTA+AGG | 0.507824 | 3_1:+12590252 | None:intergenic |
| TTTCATGAACCAGCAAAGAA+TGG | 0.508151 | 3_1:-12584954 | Msa0349210:three_prime_UTR |
| TGTTGATTTATATAGTGAAT+GGG | 0.509029 | 3_1:+12590622 | None:intergenic |
| AATACATGAAATTTAACAAA+GGG | 0.510083 | 3_1:+12584821 | None:intergenic |
| TATAGAGTTTGTCAAGATTG+TGG | 0.512497 | 3_1:-12590134 | Msa0349210:CDS |
| AATAATTGTAGTGGAAAGAA+TGG | 0.512653 | 3_1:-12588813 | Msa0349210:CDS |
| AATGCCAAAACCAACACTTA+AGG | 0.514002 | 3_1:+12590376 | None:intergenic |
| TGTGATCATGTGAAATGGGT+TGG | 0.528257 | 3_1:+12590429 | None:intergenic |
| AAATTTCATGTATTAGATCA+GGG | 0.530210 | 3_1:-12584812 | Msa0349210:three_prime_UTR |
| GTGATGGAGCTATGAGAACT+AGG | 0.539570 | 3_1:+12590501 | None:intergenic |
| ATGATGGAGAGTGAAGAAAA+TGG | 0.542008 | 3_1:-12590173 | Msa0349210:CDS |
| GAGAACAGAACAGAGCACTA+TGG | 0.549118 | 3_1:+12590653 | None:intergenic |
| GGATTCCTTCGACACGTCGT+CGG | 0.554911 | 3_1:-12590019 | Msa0349210:CDS |
| GCAGATGCAGGTTTCAAAGA+GGG | 0.558109 | 3_1:-12589026 | Msa0349210:intron |
| ACACTTAAGGAAGCTGAAGA+AGG | 0.561077 | 3_1:+12590389 | None:intergenic |
| CTATGGCACCTGAATACAGC+TGG | 0.563710 | 3_1:+12588981 | None:intergenic |
| ATCACTGAAGAAGAGAATCA+TGG | 0.572196 | 3_1:-12590206 | Msa0349210:CDS |
| CTTTCCCGACGACGTGTCGA+AGG | 0.578431 | 3_1:+12590014 | None:intergenic |
| AGAGTAACTGCTATTGGCAA+TGG | 0.579028 | 3_1:-12588960 | Msa0349210:CDS |
| CAATTGGGAAATAATTGTAG+TGG | 0.580003 | 3_1:-12588822 | Msa0349210:CDS |
| AGATGTAGGACTTGTTGTAA+GGG | 0.582676 | 3_1:-12590080 | Msa0349210:CDS |
| AAGCTGAAGAAGGTAAAGAG+TGG | 0.594711 | 3_1:+12590399 | None:intergenic |
| AGAGAAACCCTTTGAAAACA+TGG | 0.595856 | 3_1:+12588895 | None:intergenic |
| TGATGATGTTGAAGAGAAGA+AGG | 0.599517 | 3_1:+12590479 | None:intergenic |
| ATTGTGTGTTTAGAAGATGT+AGG | 0.602227 | 3_1:-12590094 | Msa0349210:CDS |
| CAAGGTGTAGCAGTAAGAAG+TGG | 0.608222 | 3_1:+12590350 | None:intergenic |
| TCTATGATCATGGTGTTGAT+GGG | 0.608318 | 3_1:-12588875 | Msa0349210:CDS |
| TAATACATGAAATTTAACAA+AGG | 0.615747 | 3_1:+12584820 | None:intergenic |
| TGCAGATGCAGGTTTCAAAG+AGG | 0.617800 | 3_1:-12589027 | Msa0349210:intron |
| GCTACTAGCTCTTGTCACCA+AGG | 0.619674 | 3_1:-12589834 | Msa0349210:intron |
| TGTTGAAGAGAAGAAGGTGA+TGG | 0.622629 | 3_1:+12590485 | None:intergenic |
| AGGACTTGTTGTAAGGGACG+TGG | 0.632558 | 3_1:-12590074 | Msa0349210:CDS |
| GACACGTCGTCGGGAAAGGG+AGG | 0.654658 | 3_1:-12590009 | Msa0349210:CDS |
| ATGGCTAGCTAGCAGAAGCA+GGG | 0.656680 | 3_1:+12588748 | None:intergenic |
| GTAAGCAATTAGGGACTGGG+AGG | 0.689897 | 3_1:+12584867 | None:intergenic |
| GCTGGTGCATGAACATGACC+TGG | 0.691114 | 3_1:+12588999 | None:intergenic |
| GAGGTGGAGATGTTTGCCGG+TGG | 0.707877 | 3_1:-12589990 | Msa0349210:CDS |
| AATTGAAGTTCTGAAACACA+AGG | 0.729820 | 3_1:+12588840 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATATTTTTATATATAA+TGG | + | chr3_1:12587005-12587024 | None:intergenic | 0.0% |
| !!! | TATATTTTTATATATAATGG+CGG | + | chr3_1:12587002-12587021 | None:intergenic | 10.0% |
| !!! | TTTTTTTTTGAATTGATATT+AGG | - | chr3_1:12587844-12587863 | Msa0349210:intron | 10.0% |
| !! | ACAAAAAGTTAAATTATATT+AGG | - | chr3_1:12589262-12589281 | Msa0349210:intron | 10.0% |
| !! | TTTATAACACTAAAAAAATT+GGG | + | chr3_1:12589392-12589411 | None:intergenic | 10.0% |
| !! | ATTTATAACACTAAAAAAAT+TGG | + | chr3_1:12589393-12589412 | None:intergenic | 10.0% |
| !! | GTTTGAATTATAAAAATTAA+GGG | + | chr3_1:12589599-12589618 | None:intergenic | 10.0% |
| !! | TGTTTGAATTATAAAAATTA+AGG | + | chr3_1:12589600-12589619 | None:intergenic | 10.0% |
| !! | TTTAAATGTTTAGATTGAAA+AGG | - | chr3_1:12585677-12585696 | Msa0349210:intron | 15.0% |
| !!! | AACATTAATTTGTTCATTAA+TGG | - | chr3_1:12585956-12585975 | Msa0349210:intron | 15.0% |
| !! | TATTAATACATTAGTTGTTA+TGG | - | chr3_1:12586206-12586225 | Msa0349210:intron | 15.0% |
| !! | TTTGAACAATATAACAAATA+GGG | + | chr3_1:12586783-12586802 | None:intergenic | 15.0% |
| !! | ATTTGAACAATATAACAAAT+AGG | + | chr3_1:12586784-12586803 | None:intergenic | 15.0% |
| !!! | ATATTTTTATATATAATGGC+GGG | + | chr3_1:12587001-12587020 | None:intergenic | 15.0% |
| !!! | TGATTTTCTCAAATTATTAA+TGG | - | chr3_1:12587417-12587436 | Msa0349210:intron | 15.0% |
| !!! | AAATCAAATTCTAAAATAGT+AGG | + | chr3_1:12587895-12587914 | None:intergenic | 15.0% |
| !!! | TTTTTTGTTATATTTAAGAC+CGG | + | chr3_1:12588090-12588109 | None:intergenic | 15.0% |
| !! | TTATTTATTGTTAAGAAAGT+TGG | - | chr3_1:12588220-12588239 | Msa0349210:intron | 15.0% |
| !! | AAAATATGGAGTAAATTAAA+AGG | + | chr3_1:12588574-12588593 | None:intergenic | 15.0% |
| !!! | TCTTTAGATACTTTATTTTT+TGG | - | chr3_1:12588909-12588928 | Msa0349210:CDS | 15.0% |
| !!! | TAAGCAAAAAACTATTTTTT+AGG | + | chr3_1:12589083-12589102 | None:intergenic | 15.0% |
| !! | TAAAGAAACTTTAATTAACT+AGG | - | chr3_1:12589292-12589311 | Msa0349210:intron | 15.0% |
| !! | ATAGACAATAAATAAATTGA+GGG | + | chr3_1:12589841-12589860 | None:intergenic | 15.0% |
| !! | AATAGACAATAAATAAATTG+AGG | + | chr3_1:12589842-12589861 | None:intergenic | 15.0% |
| !! | TAAATTAAGCAAAATATGTT+AGG | + | chr3_1:12589950-12589969 | None:intergenic | 15.0% |
| !! | ATTAATTTACACAATTAAAG+TGG | + | chr3_1:12590556-12590575 | None:intergenic | 15.0% |
| !! | AATACATGAAATTTAACAAA+GGG | + | chr3_1:12590625-12590644 | None:intergenic | 15.0% |
| !! | TAATACATGAAATTTAACAA+AGG | + | chr3_1:12590626-12590645 | None:intergenic | 15.0% |
| !!! | TGTTGATTTATATAGTGAAT+GGG | + | chr3_1:12584824-12584843 | None:intergenic | 20.0% |
| !!! | TTGTTGATTTATATAGTGAA+TGG | + | chr3_1:12584825-12584844 | None:intergenic | 20.0% |
| !!! | CAAAAATTGTTATTGTTACT+AGG | + | chr3_1:12585168-12585187 | None:intergenic | 20.0% |
| !!! | CTAGTAACAATAACAATTTT+TGG | - | chr3_1:12585166-12585185 | Msa0349210:intron | 20.0% |
| !! | AAAAACATATAGTCTATGTT+TGG | + | chr3_1:12585899-12585918 | None:intergenic | 20.0% |
| !!! | TAATTTGTTCATTAATGGAT+TGG | - | chr3_1:12585961-12585980 | Msa0349210:intron | 20.0% |
| !! | GCTAATAAATTACATCAATT+TGG | + | chr3_1:12586294-12586313 | None:intergenic | 20.0% |
| !!! | CCTCTTATCATATAATTTTA+TGG | + | chr3_1:12586334-12586353 | None:intergenic | 20.0% |
| !! | CCATAAAATTATATGATAAG+AGG | - | chr3_1:12586331-12586350 | Msa0349210:intron | 20.0% |
| !!! | TATTTTTATATATAATGGCG+GGG | + | chr3_1:12587000-12587019 | None:intergenic | 20.0% |
| !! | TCTTAAAAGATTTAGATATG+TGG | - | chr3_1:12587170-12587189 | Msa0349210:intron | 20.0% |
| !!! | TTTTTCTGATATTCAAAGTA+GGG | + | chr3_1:12587302-12587321 | None:intergenic | 20.0% |
| !!! | TTTTTTCTGATATTCAAAGT+AGG | + | chr3_1:12587303-12587322 | None:intergenic | 20.0% |
| !! | TACTTTGAATATCAGAAAAA+AGG | - | chr3_1:12587302-12587321 | Msa0349210:intron | 20.0% |
| !! | TTTAGTGTAATTATATGTGT+CGG | + | chr3_1:12587392-12587411 | None:intergenic | 20.0% |
| !! | AAACTAAAAAGTGAAAACTA+TGG | - | chr3_1:12587710-12587729 | Msa0349210:intron | 20.0% |
| !!! | TTGTATTGCAACAAATTTTT+TGG | - | chr3_1:12587778-12587797 | Msa0349210:intron | 20.0% |
| !! | TCAAATAAAGTTGAATTATC+TGG | + | chr3_1:12588143-12588162 | None:intergenic | 20.0% |
| !! | ATGTATGTAGTCTTTATTAT+AGG | - | chr3_1:12588472-12588491 | Msa0349210:intron | 20.0% |
| !! | TGAATCTCAATAGTAAAATA+TGG | + | chr3_1:12588588-12588607 | None:intergenic | 20.0% |
| !! | AAATATTATTGCACTTGTAA+AGG | - | chr3_1:12588644-12588663 | Msa0349210:intron | 20.0% |
| !! | TAATTAAAATGTGGAAGTTT+AGG | + | chr3_1:12588858-12588877 | None:intergenic | 20.0% |
| !!! | AAGCAAAAAAACTACTTTTT+AGG | - | chr3_1:12588994-12589013 | Msa0349210:CDS | 20.0% |
| !!! | TTTTTTGTATTTATGGAGAT+TGG | + | chr3_1:12589215-12589234 | None:intergenic | 20.0% |
| !!! | TGTGACATTTTGATATTTAA+AGG | - | chr3_1:12589416-12589435 | Msa0349210:intron | 20.0% |
| !!! | GTGACATTTTGATATTTAAA+GGG | - | chr3_1:12589417-12589436 | Msa0349210:intron | 20.0% |
| !!! | TGACATTTTGATATTTAAAG+GGG | - | chr3_1:12589418-12589437 | Msa0349210:intron | 20.0% |
| !! | ATATGAGATGTATAATTCTA+TGG | + | chr3_1:12589486-12589505 | None:intergenic | 20.0% |
| !! | TAGACAATAAATAAATTGAG+GGG | + | chr3_1:12589840-12589859 | None:intergenic | 20.0% |
| !! | AAAATATTTCCATTTAGGTA+AGG | + | chr3_1:12589866-12589885 | None:intergenic | 20.0% |
| !! | TAGGTAAAATATTTCCATTT+AGG | + | chr3_1:12589871-12589890 | None:intergenic | 20.0% |
| !! | AAACAAATTGATGTTATGTT+AGG | + | chr3_1:12589890-12589909 | None:intergenic | 20.0% |
| !!! | GAAAGTAATGTTTTAAAAAC+CGG | - | chr3_1:12590105-12590124 | Msa0349210:CDS | 20.0% |
| !! | AAGTAAACACAAAAAGTTTA+AGG | + | chr3_1:12590205-12590224 | None:intergenic | 20.0% |
| !!! | TATTATTGTAGGTGAATTTT+AGG | - | chr3_1:12590416-12590435 | Msa0349210:CDS | 20.0% |
| !!! | ACTTTTTGTATGTTAATTTC+AGG | - | chr3_1:12590454-12590473 | Msa0349210:CDS | 20.0% |
| !! | TAAATTTCATGTATTAGATC+AGG | - | chr3_1:12590630-12590649 | Msa0349210:five_prime_UTR | 20.0% |
| !! | AAATTTCATGTATTAGATCA+GGG | - | chr3_1:12590631-12590650 | Msa0349210:five_prime_UTR | 20.0% |
| !! | TAAAAACTTCAGTTAAACAT+TGG | + | chr3_1:12590683-12590702 | None:intergenic | 20.0% |
| !! | CATATTTTGCATCAAAAGAA+TGG | - | chr3_1:12584765-12584784 | Msa0349210:three_prime_UTR | 25.0% |
| ! | TTTATATAGTGAATGGGAAT+GGG | + | chr3_1:12584818-12584837 | None:intergenic | 25.0% |
| ! | ATTTATATAGTGAATGGGAA+TGG | + | chr3_1:12584819-12584838 | None:intergenic | 25.0% |
| !!! | GATATTGTTTTGTGTTATTG+AGG | + | chr3_1:12584850-12584869 | None:intergenic | 25.0% |
| !!! | ACAAATTCTTTGAGATTTTG+AGG | + | chr3_1:12584888-12584907 | None:intergenic | 25.0% |
| !!! | ATAACAATTTTTGGAACCTT+AGG | - | chr3_1:12585175-12585194 | Msa0349210:intron | 25.0% |
| ! | AAGAGACAAAAAGGTTTATT+AGG | - | chr3_1:12585519-12585538 | Msa0349210:intron | 25.0% |
| ! | AGAGACAAAAAGGTTTATTA+GGG | - | chr3_1:12585520-12585539 | Msa0349210:intron | 25.0% |
| ! | GTTTAGATTGAAAAGGAATT+TGG | - | chr3_1:12585684-12585703 | Msa0349210:intron | 25.0% |
| ! | ATCAATTTGGATAGTTGTTT+GGG | + | chr3_1:12586281-12586300 | None:intergenic | 25.0% |
| !! | AATAATTGTAGTGGAAAGAA+TGG | - | chr3_1:12586630-12586649 | Msa0349210:intron | 25.0% |
| !! | ACAAAAAAGTTTTTACTAGC+CGG | - | chr3_1:12587053-12587072 | Msa0349210:intron | 25.0% |
| ! | TAAAAGATTTAGATATGTGG+CGG | - | chr3_1:12587173-12587192 | Msa0349210:intron | 25.0% |
| !! | TTTTCTGATATTCAAAGTAG+GGG | + | chr3_1:12587301-12587320 | None:intergenic | 25.0% |
| ! | CAAATCTACTTCAAATTTGA+TGG | + | chr3_1:12587543-12587562 | None:intergenic | 25.0% |
| !! | ATTTTACATTATTGGTACAC+TGG | + | chr3_1:12587663-12587682 | None:intergenic | 25.0% |
| !! | GTGGTTACATTTTACATTAT+TGG | + | chr3_1:12587671-12587690 | None:intergenic | 25.0% |
| ! | CTACTATCTCATTATTATAG+TGG | + | chr3_1:12587690-12587709 | None:intergenic | 25.0% |
| ! | GGAATATTGGAGAAAAATAT+GGG | + | chr3_1:12587804-12587823 | None:intergenic | 25.0% |
| ! | AAAAAATCAATTGTGCATGA+GGG | + | chr3_1:12587827-12587846 | None:intergenic | 25.0% |
| ! | AAAAAAATCAATTGTGCATG+AGG | + | chr3_1:12587828-12587847 | None:intergenic | 25.0% |
| ! | TAACCAAAATAGTGATCATA+AGG | + | chr3_1:12587966-12587985 | None:intergenic | 25.0% |
| !! | TCTTTGTGAATTATTTTCTC+CGG | - | chr3_1:12588068-12588087 | Msa0349210:intron | 25.0% |
| !! | TTTTTGCTTATATTAGTGAC+CGG | + | chr3_1:12588424-12588443 | None:intergenic | 25.0% |
| ! | TAAGCAAAAATCCAATTTCT+AGG | - | chr3_1:12588434-12588453 | Msa0349210:intron | 25.0% |
| ! | AATTGAATGAACCTAGAAAT+TGG | + | chr3_1:12588448-12588467 | None:intergenic | 25.0% |
| ! | AATATCACTTGGAAAATCAA+TGG | - | chr3_1:12588711-12588730 | Msa0349210:intron | 25.0% |
| ! | ATGGACAACCATTAAAAAAA+AGG | - | chr3_1:12588730-12588749 | Msa0349210:intron | 25.0% |
| ! | ACAACCATTAAAAAAAAGGT+AGG | - | chr3_1:12588734-12588753 | Msa0349210:exon | 25.0% |
| !!! | CATTCCTACCTTTTTTTTAA+TGG | + | chr3_1:12588741-12588760 | None:intergenic | 25.0% |
| ! | CATTAAAAAAAAGGTAGGAA+TGG | - | chr3_1:12588739-12588758 | Msa0349210:exon | 25.0% |
| ! | ACTAATACACACTCATATAA+TGG | + | chr3_1:12588780-12588799 | None:intergenic | 25.0% |
| ! | GCAGTTCATTAATTAAAATG+TGG | + | chr3_1:12588867-12588886 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+AGG | + | chr3_1:12589093-12589112 | None:intergenic | 25.0% |
| ! | CATTGAATAAATGATGTATG+TGG | + | chr3_1:12589058-12589077 | None:intergenic | 25.0% |
| !! | TTTTTGCTTATAATAGTGAC+CGG | - | chr3_1:12589093-12589112 | Msa0349210:intron | 25.0% |
| ! | ATATATATATATACTCCCTC+CGG | + | chr3_1:12589115-12589134 | None:intergenic | 25.0% |
| ! | ATTGTACTATATTGAAGAGA+TGG | + | chr3_1:12589365-12589384 | None:intergenic | 25.0% |
| ! | ATTCAAACACTAGTAAACAT+AGG | - | chr3_1:12589611-12589630 | Msa0349210:intron | 25.0% |
| ! | AAACAAATGTTGCAGTTAAA+TGG | + | chr3_1:12589699-12589718 | None:intergenic | 25.0% |
| ! | TTCATTGCAAGAAACAATAA+TGG | + | chr3_1:12589795-12589814 | None:intergenic | 25.0% |
| ! | AGACAATAAATAAATTGAGG+GGG | + | chr3_1:12589839-12589858 | None:intergenic | 25.0% |
| ! | TTTCATTCTTGTAACAACTA+TGG | + | chr3_1:12590008-12590027 | None:intergenic | 25.0% |
| !! | TTGTTAGTTAGTTTGATGTT+TGG | - | chr3_1:12590174-12590193 | Msa0349210:CDS | 25.0% |
| !!! | TCATTCGATGTTTTAAAAAC+CGG | + | chr3_1:12590302-12590321 | None:intergenic | 25.0% |
| ! | AAAAGCAATGTATGAACAAA+CGG | + | chr3_1:12590375-12590394 | None:intergenic | 25.0% |
| ! | CTTTAATGCTCTATTATTGT+AGG | - | chr3_1:12590405-12590424 | Msa0349210:CDS | 25.0% |
| ! | TACACAATTAAAGTGGAATA+TGG | + | chr3_1:12590549-12590568 | None:intergenic | 25.0% |
| !!! | CTTTGAGATTTTGAGGTTTT+TGG | + | chr3_1:12584881-12584900 | None:intergenic | 30.0% |
| GAATTGTGATCATGTGAAAT+GGG | + | chr3_1:12585021-12585040 | None:intergenic | 30.0% | |
| TGAATTGTGATCATGTGAAA+TGG | + | chr3_1:12585022-12585041 | None:intergenic | 30.0% | |
| !! | TCTTGAACTTCATTGTTTTG+AGG | + | chr3_1:12585141-12585160 | None:intergenic | 30.0% |
| GTAGTGAATCTTCCAAAAAA+AGG | - | chr3_1:12585210-12585229 | Msa0349210:intron | 30.0% | |
| TATAGAGTTTGTCAAGATTG+TGG | - | chr3_1:12585309-12585328 | Msa0349210:intron | 30.0% | |
| TTTGTCAAGATTGTGGTAAT+AGG | - | chr3_1:12585316-12585335 | Msa0349210:intron | 30.0% | |
| TTGTCAAGATTGTGGTAATA+GGG | - | chr3_1:12585317-12585336 | Msa0349210:intron | 30.0% | |
| ATTGTGTGTTTAGAAGATGT+AGG | - | chr3_1:12585349-12585368 | Msa0349210:intron | 30.0% | |
| !! | AAAAGTAAGTGAAAGTACCT+TGG | + | chr3_1:12585629-12585648 | None:intergenic | 30.0% |
| ACACATAGACTATACATGTT+TGG | + | chr3_1:12585770-12585789 | None:intergenic | 30.0% | |
| !! | ACATTAGTCTTGTAAACACA+AGG | - | chr3_1:12585933-12585952 | Msa0349210:intron | 30.0% |
| ! | TTGTATTTTCTCCTTGATCA+GGG | - | chr3_1:12586229-12586248 | Msa0349210:intron | 30.0% |
| TTTGAATTCCGATCCTTTAA+CGG | - | chr3_1:12586252-12586271 | Msa0349210:intron | 30.0% | |
| CATCAATTTGGATAGTTGTT+TGG | + | chr3_1:12586282-12586301 | None:intergenic | 30.0% | |
| ! | TGAAGATGAATTTGCTTACT+TGG | - | chr3_1:12586506-12586525 | Msa0349210:intron | 30.0% |
| !! | AATTGAAGTTCTGAAACACA+AGG | + | chr3_1:12586606-12586625 | None:intergenic | 30.0% |
| TTGTGTTTCAGAACTTCAAT+TGG | - | chr3_1:12586605-12586624 | Msa0349210:intron | 30.0% | |
| TGTGTTTCAGAACTTCAATT+GGG | - | chr3_1:12586606-12586625 | Msa0349210:intron | 30.0% | |
| CAATTGGGAAATAATTGTAG+TGG | - | chr3_1:12586621-12586640 | Msa0349210:intron | 30.0% | |
| TTGCTTATCAGGTACATAAT+TGG | - | chr3_1:12586723-12586742 | Msa0349210:intron | 30.0% | |
| GGGAATATTGGAGAAAAATA+TGG | + | chr3_1:12587805-12587824 | None:intergenic | 30.0% | |
| AAAAATCAATTGTGCATGAG+GGG | + | chr3_1:12587826-12587845 | None:intergenic | 30.0% | |
| ! | TCTCCTTATGATCACTATTT+TGG | - | chr3_1:12587960-12587979 | Msa0349210:intron | 30.0% |
| AGATATCCAACATTATGTCT+TGG | - | chr3_1:12588003-12588022 | Msa0349210:intron | 30.0% | |
| CAAAAACCAAGACATAATGT+TGG | + | chr3_1:12588012-12588031 | None:intergenic | 30.0% | |
| ! | ATGACATGACTTTTCTTGTT+TGG | - | chr3_1:12588034-12588053 | Msa0349210:intron | 30.0% |
| CTGAATTTAAACGTTTGAGA+TGG | - | chr3_1:12588297-12588316 | Msa0349210:intron | 30.0% | |
| TAAGCAAAAATGCACTTTCT+AGG | + | chr3_1:12588523-12588542 | None:intergenic | 30.0% | |
| ! | TTTTTGCTTATATCAGTGAC+CGG | - | chr3_1:12588533-12588552 | Msa0349210:intron | 30.0% |
| ! | TACACTATAGACTTCACTTT+TGG | + | chr3_1:12588622-12588641 | None:intergenic | 30.0% |
| ATTATTGCACTTGTAAAGGA+AGG | - | chr3_1:12588648-12588667 | Msa0349210:intron | 30.0% | |
| TTATTGCACTTGTAAAGGAA+GGG | - | chr3_1:12588649-12588668 | Msa0349210:intron | 30.0% | |
| ! | GTCACTCTAAAAATATCACT+TGG | - | chr3_1:12588700-12588719 | Msa0349210:intron | 30.0% |
| ACACTGATGACAGAATATTA+GGG | + | chr3_1:12588816-12588835 | None:intergenic | 30.0% | |
| TAATGAACTGCTTAGTATAG+AGG | - | chr3_1:12588876-12588895 | Msa0349210:CDS | 30.0% | |
| TATATTGAAGAGATGGAGAT+TGG | + | chr3_1:12589358-12589377 | None:intergenic | 30.0% | |
| TAACTGCAACATTTGTTTGA+TGG | - | chr3_1:12589701-12589720 | Msa0349210:intron | 30.0% | |
| AACTGCAACATTTGTTTGAT+GGG | - | chr3_1:12589702-12589721 | Msa0349210:intron | 30.0% | |
| TGTCTATTACCTTACCTAAA+TGG | - | chr3_1:12589854-12589873 | Msa0349210:CDS | 30.0% | |
| CTCTCATTTCTTTAATCAGT+TGG | + | chr3_1:12590073-12590092 | None:intergenic | 30.0% | |
| AAACTAACTAACAAACTGGA+TGG | + | chr3_1:12590168-12590187 | None:intergenic | 30.0% | |
| CATCAAACTAACTAACAAAC+TGG | + | chr3_1:12590172-12590191 | None:intergenic | 30.0% | |
| ! | CTTTCAGGTCATTATATGAT+TGG | + | chr3_1:12590257-12590276 | None:intergenic | 30.0% |
| ! | TGTATGTTAATTTCAGGTGA+TGG | - | chr3_1:12590460-12590479 | Msa0349210:CDS | 30.0% |
| !!! | GGTTAGTTTTCTCAACAAAA+CGG | + | chr3_1:12590528-12590547 | None:intergenic | 30.0% |
| !! | TTTGAGGTTTTTGGAGAAAG+AGG | + | chr3_1:12584872-12584891 | None:intergenic | 35.0% |
| CTTGTTCCAATGAGTATGTT+AGG | - | chr3_1:12584910-12584929 | Msa0349210:three_prime_UTR | 35.0% | |
| CTAAGACCTAACATACTCAT+TGG | + | chr3_1:12584919-12584938 | None:intergenic | 35.0% | |
| ! | TGATGATGTTGAAGAGAAGA+AGG | + | chr3_1:12584967-12584986 | None:intergenic | 35.0% |
| !!! | AAATGGGTTGGTTTTGGTTT+TGG | + | chr3_1:12585005-12585024 | None:intergenic | 35.0% |
| AATGCCAAAACCAACACTTA+AGG | + | chr3_1:12585070-12585089 | None:intergenic | 35.0% | |
| TTTGGAAGATTCACTACTTC+AGG | + | chr3_1:12585207-12585226 | None:intergenic | 35.0% | |
| !!! | TCAGTGATCACTCCTTTTTT+TGG | + | chr3_1:12585225-12585244 | None:intergenic | 35.0% |
| ATCACTGAAGAAGAGAATCA+TGG | - | chr3_1:12585237-12585256 | Msa0349210:intron | 35.0% | |
| AGAAGAGAATCATGGCAAAA+TGG | - | chr3_1:12585245-12585264 | Msa0349210:intron | 35.0% | |
| ! | ATGATGGAGAGTGAAGAAAA+TGG | - | chr3_1:12585270-12585289 | Msa0349210:intron | 35.0% |
| AGTGAAGAAAATGGTGTGTA+TGG | - | chr3_1:12585279-12585298 | Msa0349210:intron | 35.0% | |
| !! | AAGATGTAGGACTTGTTGTA+AGG | - | chr3_1:12585362-12585381 | Msa0349210:intron | 35.0% |
| !! | AGATGTAGGACTTGTTGTAA+GGG | - | chr3_1:12585363-12585382 | Msa0349210:intron | 35.0% |
| !! | GTACTCATTTGAAGAGTACT+TGG | - | chr3_1:12585403-12585422 | Msa0349210:intron | 35.0% |
| ! | TCTGGTGTTAAGAGACAAAA+AGG | - | chr3_1:12585510-12585529 | Msa0349210:intron | 35.0% |
| !! | TCTCATAGCTCTAACTCTAA+TGG | - | chr3_1:12585567-12585586 | Msa0349210:intron | 35.0% |
| GTATAGTCTATGTGTATGTC+TGG | - | chr3_1:12585775-12585794 | Msa0349210:intron | 35.0% | |
| ! | CCACTTGATTTTCAAAAAGC+AGG | + | chr3_1:12585845-12585864 | None:intergenic | 35.0% |
| !!! | CCTGCTTTTTGAAAATCAAG+TGG | - | chr3_1:12585842-12585861 | Msa0349210:intron | 35.0% |
| !! | TTGTTCATTAATGGATTGGC+TGG | - | chr3_1:12585965-12585984 | Msa0349210:intron | 35.0% |
| CTAAAGATCCATAATCGTTG+CGG | + | chr3_1:12586144-12586163 | None:intergenic | 35.0% | |
| ! | GTTGTATTTTCTCCTTGATC+AGG | - | chr3_1:12586228-12586247 | Msa0349210:intron | 35.0% |
| GAGGAATTTAAGTGTCTTTG+AGG | - | chr3_1:12586350-12586369 | Msa0349210:intron | 35.0% | |
| TTGAGGACCACATGAAATTA+AGG | - | chr3_1:12586367-12586386 | Msa0349210:intron | 35.0% | |
| TCAGCAACCTTAATTTCATG+TGG | + | chr3_1:12586377-12586396 | None:intergenic | 35.0% | |
| TTGGCTACAGTTCATATTAG+TGG | - | chr3_1:12586525-12586544 | Msa0349210:intron | 35.0% | |
| ! | ATTAGTGGCCATGTTTTCAA+AGG | - | chr3_1:12586540-12586559 | Msa0349210:intron | 35.0% |
| ! | TTAGTGGCCATGTTTTCAAA+GGG | - | chr3_1:12586541-12586560 | Msa0349210:intron | 35.0% |
| ! | AGAGAAACCCTTTGAAAACA+TGG | + | chr3_1:12586551-12586570 | None:intergenic | 35.0% |
| AAAGGGTTTCTCTATGATCA+TGG | - | chr3_1:12586558-12586577 | Msa0349210:intron | 35.0% | |
| !! | TCTATGATCATGGTGTTGAT+GGG | - | chr3_1:12586568-12586587 | Msa0349210:intron | 35.0% |
| TACCTGATAAGCAATCTTCA+TGG | + | chr3_1:12586717-12586736 | None:intergenic | 35.0% | |
| ! | GTGAAAAAATGCTAGCTTGT+AGG | - | chr3_1:12586864-12586883 | Msa0349210:intron | 35.0% |
| ! | AAAATGCTAGCTTGTAGGTA+TGG | - | chr3_1:12586869-12586888 | Msa0349210:intron | 35.0% |
| !! | TTTTATATATAATGGCGGGG+CGG | + | chr3_1:12586997-12587016 | None:intergenic | 35.0% |
| ! | AAAGTTTTTACTAGCCGGAA+AGG | - | chr3_1:12587058-12587077 | Msa0349210:intron | 35.0% |
| TTTGTGTGGACAGAAATCAA+TGG | + | chr3_1:12587131-12587150 | None:intergenic | 35.0% | |
| TGATATTCAAAGTAGGGGAT+GGG | + | chr3_1:12587296-12587315 | None:intergenic | 35.0% | |
| ! | CAGAAAAAAGGTATGAAGCA+TGG | - | chr3_1:12587314-12587333 | Msa0349210:intron | 35.0% |
| TAGATTTGAATGAACCCTCA+AGG | - | chr3_1:12587555-12587574 | Msa0349210:intron | 35.0% | |
| AGATTTGAATGAACCCTCAA+GGG | - | chr3_1:12587556-12587575 | Msa0349210:intron | 35.0% | |
| GTTCAACTAGGTATGACAAT+GGG | + | chr3_1:12587588-12587607 | None:intergenic | 35.0% | |
| TGTTCAACTAGGTATGACAA+TGG | + | chr3_1:12587589-12587608 | None:intergenic | 35.0% | |
| AAGATGTGCAATGTTCAACT+AGG | + | chr3_1:12587600-12587619 | None:intergenic | 35.0% | |
| AATGCATCACTTCACTTTGA+TGG | - | chr3_1:12587624-12587643 | Msa0349210:intron | 35.0% | |
| ATGCATCACTTCACTTTGAT+GGG | - | chr3_1:12587625-12587644 | Msa0349210:intron | 35.0% | |
| ! | ACATTATTGGTACACTGGTT+TGG | + | chr3_1:12587658-12587677 | None:intergenic | 35.0% |
| AAGTGAAAACTATGGTGTGA+TGG | - | chr3_1:12587718-12587737 | Msa0349210:intron | 35.0% | |
| AGTGAAAACTATGGTGTGAT+GGG | - | chr3_1:12587719-12587738 | Msa0349210:intron | 35.0% | |
| TTGTTGCAATACAAGTTGTG+AGG | + | chr3_1:12587772-12587791 | None:intergenic | 35.0% | |
| AAAATCAATTGTGCATGAGG+GGG | + | chr3_1:12587825-12587844 | None:intergenic | 35.0% | |
| AAATCTTTCCACTACTACTC+TGG | + | chr3_1:12588191-12588210 | None:intergenic | 35.0% | |
| TGACAGAATATTAGGGATAG+TGG | + | chr3_1:12588809-12588828 | None:intergenic | 35.0% | |
| CACACTGATGACAGAATATT+AGG | + | chr3_1:12588817-12588836 | None:intergenic | 35.0% | |
| TGCTTATAATAGTGACAGGA+GGG | + | chr3_1:12588979-12588998 | None:intergenic | 35.0% | |
| TTGCTTATAATAGTGACAGG+AGG | + | chr3_1:12588980-12588999 | None:intergenic | 35.0% | |
| !!! | CTAGTAGTAGCTTTTTTGTG+GGG | + | chr3_1:12589576-12589595 | None:intergenic | 35.0% |
| !!! | GCTAGTAGTAGCTTTTTTGT+GGG | + | chr3_1:12589577-12589596 | None:intergenic | 35.0% |
| ACACTAGTAAACATAGGACT+AGG | - | chr3_1:12589617-12589636 | Msa0349210:intron | 35.0% | |
| TAGTAAACATAGGACTAGGA+AGG | - | chr3_1:12589621-12589640 | Msa0349210:intron | 35.0% | |
| TTCATCAAACACATCTACCT+TGG | - | chr3_1:12589655-12589674 | Msa0349210:intron | 35.0% | |
| CTAGGATAGAAACACAACAT+TGG | - | chr3_1:12590333-12590352 | Msa0349210:CDS | 35.0% | |
| TTTCATGAACCAGCAAAGAA+TGG | - | chr3_1:12590489-12590508 | Msa0349210:CDS | 35.0% | |
| ATAAAACGTCCATTCTTTGC+TGG | + | chr3_1:12590501-12590520 | None:intergenic | 35.0% | |
| AGTCTGCAAGTAAGCAATTA+GGG | + | chr3_1:12590588-12590607 | None:intergenic | 35.0% | |
| AAGTCTGCAAGTAAGCAATT+AGG | + | chr3_1:12590589-12590608 | None:intergenic | 35.0% | |
| CTTGCAGACTTAAAGCTTAA+TGG | - | chr3_1:12590598-12590617 | Msa0349210:five_prime_UTR | 35.0% | |
| TGTTGAAGAGAAGAAGGTGA+TGG | + | chr3_1:12584961-12584980 | None:intergenic | 40.0% | |
| !!! | CATGTGAAATGGGTTGGTTT+TGG | + | chr3_1:12585011-12585030 | None:intergenic | 40.0% |
| TGTGATCATGTGAAATGGGT+TGG | + | chr3_1:12585017-12585036 | None:intergenic | 40.0% | |
| AAGCTGAAGAAGGTAAAGAG+TGG | + | chr3_1:12585047-12585066 | None:intergenic | 40.0% | |
| ACACTTAAGGAAGCTGAAGA+AGG | + | chr3_1:12585057-12585076 | None:intergenic | 40.0% | |
| TCTTCAGCTTCCTTAAGTGT+TGG | - | chr3_1:12585057-12585076 | Msa0349210:intron | 40.0% | |
| !!! | GCTTCCTTAAGTGTTGGTTT+TGG | - | chr3_1:12585063-12585082 | Msa0349210:intron | 40.0% |
| ! | TGTTGTTGTTGTTGCATGCA+AGG | + | chr3_1:12585114-12585133 | None:intergenic | 40.0% |
| TCATGGCAAAATGGCTATGA+TGG | - | chr3_1:12585254-12585273 | Msa0349210:intron | 40.0% | |
| GAGCTAGTAGCAAAACTCTT+TGG | + | chr3_1:12585600-12585619 | None:intergenic | 40.0% | |
| CTATAGCTTCTGCAAAATCG+CGG | + | chr3_1:12585811-12585830 | None:intergenic | 40.0% | |
| CAGAAGCTATAGAGTCTCAA+TGG | - | chr3_1:12585819-12585838 | Msa0349210:intron | 40.0% | |
| TTCTGTTGAATTGCAGATGC+AGG | - | chr3_1:12586405-12586424 | Msa0349210:intron | 40.0% | |
| TGCCATAGAGTAACTGCTAT+TGG | - | chr3_1:12586477-12586496 | Msa0349210:intron | 40.0% | |
| TGCCAATAGCAGTTACTCTA+TGG | + | chr3_1:12586482-12586501 | None:intergenic | 40.0% | |
| AGAGTAACTGCTATTGGCAA+TGG | - | chr3_1:12586483-12586502 | Msa0349210:intron | 40.0% | |
| ! | CTCTATGATCATGGTGTTGA+TGG | - | chr3_1:12586567-12586586 | Msa0349210:intron | 40.0% |
| !! | AGTTCTGAAACACAAGGCAT+TGG | + | chr3_1:12586600-12586619 | None:intergenic | 40.0% |
| GGTGAATGTTCTTCTGCAAT+TGG | - | chr3_1:12586651-12586670 | Msa0349210:intron | 40.0% | |
| GCAGGGTAAGCATTATTGTT+TGG | + | chr3_1:12586681-12586700 | None:intergenic | 40.0% | |
| AGCCATGAAGATTGCTTATC+AGG | - | chr3_1:12586712-12586731 | Msa0349210:intron | 40.0% | |
| ! | ATCTATTTTCCGATCCGTCA+GGG | + | chr3_1:12586942-12586961 | None:intergenic | 40.0% |
| ! | TATCTATTTTCCGATCCGTC+AGG | + | chr3_1:12586943-12586962 | None:intergenic | 40.0% |
| ! | TTTATATATAATGGCGGGGC+GGG | + | chr3_1:12586996-12587015 | None:intergenic | 40.0% |
| ! | TTTTACTAGCCGGAAAGGTT+TGG | - | chr3_1:12587063-12587082 | Msa0349210:intron | 40.0% |
| TTTACTAGCCGGAAAGGTTT+GGG | - | chr3_1:12587064-12587083 | Msa0349210:intron | 40.0% | |
| !! | TTCACCTTTTGTGGTTTGTG+TGG | + | chr3_1:12587145-12587164 | None:intergenic | 40.0% |
| ACACAAACCACAAAAGGTGA+AGG | - | chr3_1:12587144-12587163 | Msa0349210:intron | 40.0% | |
| CACAAACCACAAAAGGTGAA+GGG | - | chr3_1:12587145-12587164 | Msa0349210:intron | 40.0% | |
| ! | AAGATTCCCTTCACCTTTTG+TGG | + | chr3_1:12587154-12587173 | None:intergenic | 40.0% |
| !! | TGATTGGTTCTATGGCACAA+TGG | - | chr3_1:12587200-12587219 | Msa0349210:intron | 40.0% |
| TACTTCAGTGCCATAGCAAT+TGG | + | chr3_1:12587228-12587247 | None:intergenic | 40.0% | |
| ! | CACTGAAGTATTTCCCTTTG+CGG | - | chr3_1:12587238-12587257 | Msa0349210:intron | 40.0% |
| GATATTCAAAGTAGGGGATG+GGG | + | chr3_1:12587295-12587314 | None:intergenic | 40.0% | |
| CTGATATTCAAAGTAGGGGA+TGG | + | chr3_1:12587297-12587316 | None:intergenic | 40.0% | |
| ! | GAGTTTTCTCCTATGAAGCA+CGG | + | chr3_1:12587490-12587509 | None:intergenic | 40.0% |
| AGAAGCTAGTTCATGCAGTT+AGG | - | chr3_1:12587931-12587950 | Msa0349210:intron | 40.0% | |
| TGCTTATATTAGTGACCGGA+GGG | + | chr3_1:12588420-12588439 | None:intergenic | 40.0% | |
| TTGCTTATATTAGTGACCGG+AGG | + | chr3_1:12588421-12588440 | None:intergenic | 40.0% | |
| CACTTGTAAAGGAAGGGTAA+AGG | - | chr3_1:12588655-12588674 | Msa0349210:intron | 40.0% | |
| AGGGTAAAGGAACAGTTTAG+AGG | - | chr3_1:12588668-12588687 | Msa0349210:intron | 40.0% | |
| GGGTAAAGGAACAGTTTAGA+GGG | - | chr3_1:12588669-12588688 | Msa0349210:intron | 40.0% | |
| GGTAAAGGAACAGTTTAGAG+GGG | - | chr3_1:12588670-12588689 | Msa0349210:intron | 40.0% | |
| AAATGTGGAAGTTTAGGCTG+TGG | + | chr3_1:12588852-12588871 | None:intergenic | 40.0% | |
| TTGCTTATAATAGTGACCGG+AGG | - | chr3_1:12589096-12589115 | Msa0349210:intron | 40.0% | |
| TGCTTATAATAGTGACCGGA+GGG | - | chr3_1:12589097-12589116 | Msa0349210:intron | 40.0% | |
| !!! | TAGTAGCTTTTTTGTGGGGA+GGG | + | chr3_1:12589572-12589591 | None:intergenic | 40.0% |
| !!! | GGCTAGTAGTAGCTTTTTTG+TGG | + | chr3_1:12589578-12589597 | None:intergenic | 40.0% |
| CAGTTAAATGGTGACAACCT+TGG | + | chr3_1:12589687-12589706 | None:intergenic | 40.0% | |
| ATCAGTTGGCATGTTTGCTT+TGG | + | chr3_1:12590059-12590078 | None:intergenic | 40.0% | |
| ! | CAATCATGAACTCGCTGATT+CGG | + | chr3_1:12590132-12590151 | None:intergenic | 40.0% |
| CAGCGAGTTCATGATTGAAT+TGG | - | chr3_1:12590135-12590154 | Msa0349210:CDS | 40.0% | |
| TAATGACCTGAAAGCTTCGT+CGG | - | chr3_1:12590263-12590282 | Msa0349210:CDS | 40.0% | |
| CGAATGAAATGAGAAGAGCT+AGG | - | chr3_1:12590315-12590334 | Msa0349210:CDS | 40.0% | |
| !! | TCTTTGCTGGTTCATGAAAC+TGG | + | chr3_1:12590488-12590507 | None:intergenic | 40.0% |
| CAAGTAAGCAATTAGGGACT+GGG | + | chr3_1:12590582-12590601 | None:intergenic | 40.0% | |
| ! | GAGAACAGAACAGAGCACTA+TGG | + | chr3_1:12584793-12584812 | None:intergenic | 45.0% |
| ! | GTGATGGAGCTATGAGAACT+AGG | + | chr3_1:12584945-12584964 | None:intergenic | 45.0% |
| CAAGGTGTAGCAGTAAGAAG+TGG | + | chr3_1:12585096-12585115 | None:intergenic | 45.0% | |
| CTACTTCAGGACACATCCTA+AGG | + | chr3_1:12585194-12585213 | None:intergenic | 45.0% | |
| CGTATGACTATGTGAATGCG+TGG | - | chr3_1:12586109-12586128 | Msa0349210:intron | 45.0% | |
| TATCGTGACCGCAACGATTA+TGG | - | chr3_1:12586133-12586152 | Msa0349210:intron | 45.0% | |
| CGGAATTCAAACCCTGATCA+AGG | + | chr3_1:12586243-12586262 | None:intergenic | 45.0% | |
| TTGGGCTACCGTTAAAGGAT+CGG | + | chr3_1:12586263-12586282 | None:intergenic | 45.0% | |
| GTTGTTTGGGCTACCGTTAA+AGG | + | chr3_1:12586268-12586287 | None:intergenic | 45.0% | |
| TGCAGATGCAGGTTTCAAAG+AGG | - | chr3_1:12586416-12586435 | Msa0349210:intron | 45.0% | |
| GCAGATGCAGGTTTCAAAGA+GGG | - | chr3_1:12586417-12586436 | Msa0349210:intron | 45.0% | |
| GGTTTCAAAGAGGGTTTACC+AGG | - | chr3_1:12586426-12586445 | Msa0349210:intron | 45.0% | |
| TTCATGCACCAGCTGTATTC+AGG | - | chr3_1:12586454-12586473 | Msa0349210:intron | 45.0% | |
| ! | CTAGCTTGTAGGTATGGCAA+CGG | - | chr3_1:12586875-12586894 | Msa0349210:intron | 45.0% |
| ! | TAGCTTGTAGGTATGGCAAC+GGG | - | chr3_1:12586876-12586895 | Msa0349210:intron | 45.0% |
| ! | AAAGGTTTGGGTTTCCGGTT+GGG | - | chr3_1:12587076-12587095 | Msa0349210:intron | 45.0% |
| CTGTCCACACAAACCACAAA+AGG | - | chr3_1:12587138-12587157 | Msa0349210:intron | 45.0% | |
| ! | GATATGTGGCGGAATGTGAT+TGG | - | chr3_1:12587184-12587203 | Msa0349210:intron | 45.0% |
| !! | GCGGAATGTGATTGGTTCTA+TGG | - | chr3_1:12587192-12587211 | Msa0349210:intron | 45.0% |
| CACAATGGCACCAATTGCTA+TGG | - | chr3_1:12587215-12587234 | Msa0349210:intron | 45.0% | |
| ! | GAAGTATTTCCCTTTGCGGT+TGG | - | chr3_1:12587242-12587261 | Msa0349210:intron | 45.0% |
| ATACCTACTCCAACCGCAAA+GGG | + | chr3_1:12587254-12587273 | None:intergenic | 45.0% | |
| TATGAAGCATGGACACTCCT+CGG | - | chr3_1:12587325-12587344 | Msa0349210:intron | 45.0% | |
| TGCCTATATCCGTGCTTCAT+AGG | - | chr3_1:12587478-12587497 | Msa0349210:intron | 45.0% | |
| CTCCTATGAAGCACGGATAT+AGG | + | chr3_1:12587483-12587502 | None:intergenic | 45.0% | |
| TTGTGCATGAGGGGGAATAT+TGG | + | chr3_1:12587817-12587836 | None:intergenic | 45.0% | |
| ATTCGAGACCAGAGTAGTAG+TGG | - | chr3_1:12588180-12588199 | Msa0349210:intron | 45.0% | |
| CACTAACTTTCTACACCCTC+CGG | - | chr3_1:12588402-12588421 | Msa0349210:intron | 45.0% | |
| TTGCTTATATCAGTGACCGG+AGG | - | chr3_1:12588536-12588555 | Msa0349210:intron | 45.0% | |
| TGCTTATATCAGTGACCGGA+GGG | - | chr3_1:12588537-12588556 | Msa0349210:intron | 45.0% | |
| ! | AAGGAAAAGTGTACACCCTC+CGG | + | chr3_1:12588555-12588574 | None:intergenic | 45.0% |
| !!! | AGTAGCTTTTTTGTGGGGAG+GGG | + | chr3_1:12589571-12589590 | None:intergenic | 45.0% |
| !!! | GTAGTAGCTTTTTTGTGGGG+AGG | + | chr3_1:12589573-12589592 | None:intergenic | 45.0% |
| ! | ATCTACCTTGGTGTAGACCA+AGG | - | chr3_1:12589667-12589686 | Msa0349210:intron | 45.0% |
| CACGTCTTGCACATAGATGA+AGG | - | chr3_1:12589915-12589934 | Msa0349210:CDS | 45.0% | |
| ATTGAACCGACGAAGCTTTC+AGG | + | chr3_1:12590272-12590291 | None:intergenic | 45.0% | |
| !! | AGCTTCGTCGGTTCAATCTT+CGG | - | chr3_1:12590275-12590294 | Msa0349210:CDS | 45.0% |
| GCAAGTAAGCAATTAGGGAC+TGG | + | chr3_1:12590583-12590602 | None:intergenic | 45.0% | |
| !!! | ATTAATTTTTTTTGTATTTA+TGG | + | chr3_1:12589222-12589241 | None:intergenic | 5.0% |
| !! | AAAAAAATTAATAAATGAAT+TGG | - | chr3_1:12589230-12589249 | Msa0349210:intron | 5.0% |
| !! | AGGACTTGTTGTAAGGGACG+TGG | - | chr3_1:12585369-12585388 | Msa0349210:intron | 50.0% |
| ! | GCTACTAGCTCTTGTCACCA+AGG | - | chr3_1:12585609-12585628 | Msa0349210:intron | 50.0% |
| GCTGGATTCATGCAATCACG+CGG | - | chr3_1:12585983-12586002 | Msa0349210:intron | 50.0% | |
| GATTCATGCAATCACGCGGT+TGG | - | chr3_1:12585987-12586006 | Msa0349210:intron | 50.0% | |
| CTATGGCACCTGAATACAGC+TGG | + | chr3_1:12586465-12586484 | None:intergenic | 50.0% | |
| ! | ATGGCTAGCTAGCAGAAGCA+GGG | + | chr3_1:12586698-12586717 | None:intergenic | 50.0% |
| AGCTTGTAGGTATGGCAACG+GGG | - | chr3_1:12586877-12586896 | Msa0349210:intron | 50.0% | |
| ! | TTTTCCGATCCGTCAGGGAT+CGG | + | chr3_1:12586937-12586956 | None:intergenic | 50.0% |
| ATATCCATCCCCACCTTCGA+TGG | - | chr3_1:12586960-12586979 | Msa0349210:intron | 50.0% | |
| AACCTGACTCCATCGAAGGT+GGG | + | chr3_1:12586972-12586991 | None:intergenic | 50.0% | |
| AAACCTGACTCCATCGAAGG+TGG | + | chr3_1:12586973-12586992 | None:intergenic | 50.0% | |
| ACCGGAAACCCAAACCTTTC+CGG | + | chr3_1:12587075-12587094 | None:intergenic | 50.0% | |
| ! | GAAAGGTTTGGGTTTCCGGT+TGG | - | chr3_1:12587075-12587094 | Msa0349210:intron | 50.0% |
| ACTTCCGTGCCATAATGGCA+CGG | - | chr3_1:12587103-12587122 | Msa0349210:intron | 50.0% | |
| ! | TCAATGGCACCGTGCCATTA+TGG | + | chr3_1:12587115-12587134 | None:intergenic | 50.0% |
| TTTCCCTTTGCGGTTGGAGT+AGG | - | chr3_1:12587248-12587267 | Msa0349210:intron | 50.0% | |
| GATACCTACTCCAACCGCAA+AGG | + | chr3_1:12587255-12587274 | None:intergenic | 50.0% | |
| GATTAGGTGTGTCCTGGTGT+CGG | - | chr3_1:12587347-12587366 | Msa0349210:intron | 50.0% | |
| CACGATACATATCCGACACC+AGG | + | chr3_1:12587362-12587381 | None:intergenic | 50.0% | |
| TGAATGAACCCTCAAGGGTG+TGG | - | chr3_1:12587561-12587580 | Msa0349210:intron | 50.0% | |
| ! | GAATGAACCCTCAAGGGTGT+GGG | - | chr3_1:12587562-12587581 | Msa0349210:intron | 50.0% |
| ! | ATGGTGTGATGGGAAGTGTG+TGG | - | chr3_1:12587729-12587748 | Msa0349210:intron | 50.0% |
| ! | TGATGGGAAGTGTGTGGTGT+GGG | - | chr3_1:12587735-12587754 | Msa0349210:intron | 50.0% |
| GGAAGTTTAGGCTGTGGTTG+TGG | + | chr3_1:12588846-12588865 | None:intergenic | 50.0% | |
| GACAACCTTGGTCTACACCA+AGG | + | chr3_1:12589675-12589694 | None:intergenic | 50.0% | |
| !! | ATGAACTCGCTGATTCGGTC+CGG | + | chr3_1:12590127-12590146 | None:intergenic | 50.0% |
| GTAAGCAATTAGGGACTGGG+AGG | + | chr3_1:12590579-12590598 | None:intergenic | 50.0% | |
| GGATTCCTTCGACACGTCGT+CGG | - | chr3_1:12585424-12585443 | Msa0349210:intron | 55.0% | |
| GATTCCTTCGACACGTCGTC+GGG | - | chr3_1:12585425-12585444 | Msa0349210:intron | 55.0% | |
| TTCGACACGTCGTCGGGAAA+GGG | - | chr3_1:12585431-12585450 | Msa0349210:intron | 55.0% | |
| AGGGAGGTGGAGATGTTTGC+CGG | - | chr3_1:12585450-12585469 | Msa0349210:intron | 55.0% | |
| ! | GGTGATGGTGAGGGTTGTTC+TGG | - | chr3_1:12585492-12585511 | Msa0349210:intron | 55.0% |
| GCTGGTGCATGAACATGACC+TGG | + | chr3_1:12586447-12586466 | None:intergenic | 55.0% | |
| ! | CATGGCTAGCTAGCAGAAGC+AGG | + | chr3_1:12586699-12586718 | None:intergenic | 55.0% |
| TTGTAGGTATGGCAACGGGG+TGG | - | chr3_1:12586880-12586899 | Msa0349210:intron | 55.0% | |
| GTATGGCAACGGGGTGGTTA+GGG | - | chr3_1:12586886-12586905 | Msa0349210:intron | 55.0% | |
| TATGGCAACGGGGTGGTTAG+GGG | - | chr3_1:12586887-12586906 | Msa0349210:intron | 55.0% | |
| TCCCTAGAACCGATCCCTGA+CGG | - | chr3_1:12586925-12586944 | Msa0349210:intron | 55.0% | |
| ! | TCCGTCAGGGATCGGTTCTA+GGG | + | chr3_1:12586929-12586948 | None:intergenic | 55.0% |
| ! | ATCCGTCAGGGATCGGTTCT+AGG | + | chr3_1:12586930-12586949 | None:intergenic | 55.0% |
| ! | AGAACCGATCCCTGACGGAT+CGG | - | chr3_1:12586930-12586949 | Msa0349210:intron | 55.0% |
| ACCTGACTCCATCGAAGGTG+GGG | + | chr3_1:12586971-12586990 | None:intergenic | 55.0% | |
| GGGAAACCTGACTCCATCGA+AGG | + | chr3_1:12586976-12586995 | None:intergenic | 55.0% | |
| ! | GCCGGAAAGGTTTGGGTTTC+CGG | - | chr3_1:12587071-12587090 | Msa0349210:intron | 55.0% |
| GCAGCACTTCCGTGCCATAA+TGG | - | chr3_1:12587098-12587117 | Msa0349210:intron | 55.0% | |
| GCATGGACACTCCTCGGATT+AGG | - | chr3_1:12587331-12587350 | Msa0349210:intron | 55.0% | |
| ! | TCCTCGGATTAGGTGTGTCC+TGG | - | chr3_1:12587341-12587360 | Msa0349210:intron | 55.0% |
| ACCAGGACACACCTAATCCG+AGG | + | chr3_1:12587345-12587364 | None:intergenic | 55.0% | |
| ATCCATGTCGTGTCCGCTGT+CGG | - | chr3_1:12587455-12587474 | Msa0349210:intron | 55.0% | |
| !! | ACGGATATAGGCACCGACAG+CGG | + | chr3_1:12587471-12587490 | None:intergenic | 55.0% |
| ! | GTGATGGGAAGTGTGTGGTG+TGG | - | chr3_1:12587734-12587753 | Msa0349210:intron | 55.0% |
| !! | CGTCGGTTCAATCTTCGGTC+CGG | - | chr3_1:12590280-12590299 | Msa0349210:CDS | 55.0% |
| CTTTCCCGACGACGTGTCGA+AGG | + | chr3_1:12585432-12585451 | None:intergenic | 60.0% | |
| CTTCGACACGTCGTCGGGAA+AGG | - | chr3_1:12585430-12585449 | Msa0349210:intron | 60.0% | |
| GAGGTGGAGATGTTTGCCGG+TGG | - | chr3_1:12585453-12585472 | Msa0349210:intron | 60.0% | |
| GTGGAGATGTTTGCCGGTGG+TGG | - | chr3_1:12585456-12585475 | Msa0349210:intron | 60.0% | |
| ! | GAGATGTTTGCCGGTGGTGG+TGG | - | chr3_1:12585459-12585478 | Msa0349210:intron | 60.0% |
| !! | ATGTTTGCCGGTGGTGGTGG+TGG | - | chr3_1:12585462-12585481 | Msa0349210:intron | 60.0% |
| !! | TGGTGGTGGTGGTGATGGTG+AGG | - | chr3_1:12585482-12585501 | Msa0349210:intron | 60.0% |
| !! | GGTGGTGGTGGTGATGGTGA+GGG | - | chr3_1:12585483-12585502 | Msa0349210:intron | 60.0% |
| GGTATGGCAACGGGGTGGTT+AGG | - | chr3_1:12586885-12586904 | Msa0349210:intron | 60.0% | |
| GACTCCATCGAAGGTGGGGA+TGG | + | chr3_1:12586967-12586986 | None:intergenic | 60.0% | |
| TCCCCACCTTCGATGGAGTC+AGG | - | chr3_1:12586967-12586986 | Msa0349210:intron | 60.0% | |
| ! | GGCACCGTGCCATTATGGCA+CGG | + | chr3_1:12587110-12587129 | None:intergenic | 60.0% |
| GGGGATGGGGATGACGATGA+AGG | + | chr3_1:12587282-12587301 | None:intergenic | 60.0% | |
| CAATGGGCCCACACCCTTGA+GGG | + | chr3_1:12587572-12587591 | None:intergenic | 60.0% | |
| ACAATGGGCCCACACCCTTG+AGG | + | chr3_1:12587573-12587592 | None:intergenic | 60.0% | |
| GACACGTCGTCGGGAAAGGG+AGG | - | chr3_1:12585434-12585453 | Msa0349210:intron | 65.0% | |
| ACGTCGTCGGGAAAGGGAGG+TGG | - | chr3_1:12585437-12585456 | Msa0349210:intron | 65.0% | |
| !! | TTTGCCGGTGGTGGTGGTGG+TGG | - | chr3_1:12585465-12585484 | Msa0349210:intron | 65.0% |
| ACCACCACCACCACCACCAC+CGG | + | chr3_1:12585472-12585491 | None:intergenic | 65.0% | |
| !! | GGTGGTGGTGGTGGTGGTGA+TGG | - | chr3_1:12585477-12585496 | Msa0349210:intron | 65.0% |
| !! | GCACGGAAGTGCTGCCCAAC+CGG | + | chr3_1:12587093-12587112 | None:intergenic | 65.0% |
| CACCGACAGCGGACACGACA+TGG | + | chr3_1:12587460-12587479 | None:intergenic | 65.0% | |
| !! | GGTGGTGGTGGTGGTGGTGG+TGG | - | chr3_1:12585471-12585490 | Msa0349210:intron | 70.0% |
| !! | GCCGGTGGTGGTGGTGGTGG+TGG | - | chr3_1:12585468-12585487 | Msa0349210:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_1 | gene | 12584754 | 12590711 | 12584754 | ID=Msa0349210;Name=Msa0349210 |
| chr3_1 | mRNA | 12584754 | 12590711 | 12584754 | ID=Msa0349210-mRNA-1;Parent=Msa0349210;Name=Msa0349210-mRNA-1;_AED=0.00;_eAED=0.00;_QI=165|1|1|1|0.5|0.33|3|256|334 |
| chr3_1 | exon | 12584754 | 12584989 | 12584754 | ID=Msa0349210-mRNA-1:exon:3252;Parent=Msa0349210-mRNA-1 |
| chr3_1 | exon | 12588732 | 12589044 | 12588732 | ID=Msa0349210-mRNA-1:exon:3251;Parent=Msa0349210-mRNA-1 |
| chr3_1 | exon | 12589835 | 12590711 | 12589835 | ID=Msa0349210-mRNA-1:exon:3250;Parent=Msa0349210-mRNA-1 |
| chr3_1 | five_prime_UTR | 12590547 | 12590711 | 12590547 | ID=Msa0349210-mRNA-1:five_prime_utr;Parent=Msa0349210-mRNA-1 |
| chr3_1 | CDS | 12589835 | 12590546 | 12589835 | ID=Msa0349210-mRNA-1:cds;Parent=Msa0349210-mRNA-1 |
| chr3_1 | CDS | 12588752 | 12589044 | 12588752 | ID=Msa0349210-mRNA-1:cds;Parent=Msa0349210-mRNA-1 |
| chr3_1 | three_prime_UTR | 12588732 | 12588751 | 12588732 | ID=Msa0349210-mRNA-1:three_prime_utr;Parent=Msa0349210-mRNA-1 |
| chr3_1 | three_prime_UTR | 12584754 | 12584989 | 12584754 | ID=Msa0349210-mRNA-1:three_prime_utr;Parent=Msa0349210-mRNA-1 |
| Gene Sequence |
| Protein sequence |
