AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0646050

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646050 MtrunA17_Chr4g0034681 93.487 522 5 1 1 493 1 522 0.0 971
Msa0646050 MtrunA17_Chr3g0144361 76.639 488 83 1 13 469 11 498 0.0 756
Msa0646050 MtrunA17_Chr4g0036021 70.633 521 119 4 1 493 1 515 0.0 721
Msa0646050 MtrunA17_Chr8g0373531 55.967 486 181 4 27 481 16 499 0.0 522
Msa0646050 MtrunA17_Chr5g0432581 52.675 486 196 4 25 479 14 496 1.41e-179 513
Msa0646050 MtrunA17_Chr6g0485661 51.050 476 210 4 2 454 27 502 1.23e-168 486
Msa0646050 MtrunA17_Chr2g0282031 49.692 487 209 4 22 486 45 517 4.79e-163 471
Msa0646050 MtrunA17_Chr4g0021771 45.473 497 241 5 12 488 41 527 3.95e-150 439
Msa0646050 MtrunA17_Chr8g0390521 49.563 458 208 4 27 462 15 471 2.65e-147 431
Msa0646050 MtrunA17_Chr5g0403831 43.321 524 248 6 1 490 2 510 1.13e-141 417
Msa0646050 MtrunA17_Chr7g0214451 30.675 489 308 10 17 481 18 499 2.18e-67 224
Msa0646050 MtrunA17_Chr1g0213611 30.849 483 303 9 17 473 63 540 2.80e-66 223
Msa0646050 MtrunA17_Chr4g0039651 31.919 495 276 14 13 460 18 498 5.89e-64 215
Msa0646050 MtrunA17_Chr1g0213631 31.435 439 274 9 49 468 4 434 7.71e-60 203
Msa0646050 MtrunA17_Chr3g0115781 28.893 488 299 11 34 481 29 508 2.36e-57 198
Msa0646050 MtrunA17_Chr7g0250881 31.478 467 290 11 11 459 45 499 5.29e-57 197
Msa0646050 MtrunA17_Chr5g0394341 28.542 487 307 9 34 484 26 507 3.50e-56 195
Msa0646050 MtrunA17_Chr4g0032021 30.480 479 275 14 26 460 88 552 3.96e-56 196
Msa0646050 MtrunA17_Chr6g0457781 32.360 445 264 11 36 459 111 539 1.04e-55 194
Msa0646050 MtrunA17_Chr3g0115721 28.157 483 306 8 34 479 27 505 1.29e-54 191
Msa0646050 MtrunA17_Chr3g0115741 27.216 485 308 9 34 479 30 508 3.77e-53 187
Msa0646050 MtrunA17_Chr5g0420841 28.740 508 315 13 20 486 10 511 4.08e-53 187
Msa0646050 MtrunA17_Chr7g0259471 28.664 464 304 6 12 461 22 472 8.09e-53 185
Msa0646050 MtrunA17_Chr4g0065311 28.846 468 297 10 31 466 23 486 9.61e-52 182
Msa0646050 MtrunA17_Chr4g0066581 28.571 469 307 8 10 462 30 486 2.72e-51 181
Msa0646050 MtrunA17_Chr1g0205691 28.155 515 319 11 19 492 11 515 9.17e-51 181
Msa0646050 MtrunA17_Chr1g0155221 28.855 454 284 8 32 462 51 488 1.27e-50 179
Msa0646050 MtrunA17_Chr8g0373181 27.093 454 289 8 33 462 50 485 1.95e-50 179
Msa0646050 MtrunA17_Chr3g0115751 27.975 479 305 8 34 476 32 506 6.63e-50 178
Msa0646050 MtrunA17_Chr3g0085971 28.655 513 319 11 11 479 2 511 6.92e-50 178
Msa0646050 MtrunA17_Chr1g0205671 27.021 470 304 9 34 469 27 491 1.12e-49 177
Msa0646050 MtrunA17_Chr5g0445601 28.392 479 302 11 23 466 20 492 1.78e-49 177
Msa0646050 MtrunA17_Chr4g0065324 27.975 479 308 9 21 466 20 494 2.03e-49 177
Msa0646050 MtrunA17_Chr7g0273281 28.959 442 287 8 35 462 67 495 1.08e-48 174
Msa0646050 MtrunA17_Chr7g0257631 29.228 479 298 11 23 466 54 526 1.38e-48 175
Msa0646050 MtrunA17_Chr5g0437021 28.628 503 311 11 21 483 14 508 1.61e-48 174
Msa0646050 MtrunA17_Chr1g0205681 26.216 473 309 8 34 468 27 497 3.51e-48 173
Msa0646050 MtrunA17_Chr8g0390261 25.662 491 325 10 29 483 26 512 4.71e-48 173
Msa0646050 MtrunA17_Chr7g0259221 28.602 465 303 8 12 461 24 474 5.19e-48 172
Msa0646050 MtrunA17_Chr2g0286721 29.385 439 276 8 41 461 60 482 5.45e-48 172
Msa0646050 MtrunA17_Chr2g0290181 31.549 355 215 5 22 351 19 370 1.36e-47 173
Msa0646050 MtrunA17_Chr2g0290181 37.374 99 62 0 369 467 463 561 1.29e-14 76.3
Msa0646050 MtrunA17_Chr4g0048051 27.778 486 277 12 34 467 27 490 3.47e-47 171
Msa0646050 MtrunA17_Chr3g0078971 25.097 514 339 11 6 484 3 505 3.82e-47 171
Msa0646050 MtrunA17_Chr1g0164851 27.505 509 316 11 1 470 1 495 6.66e-47 171
Msa0646050 MtrunA17_Chr1g0164871 27.096 513 321 11 1 474 1 499 7.78e-47 170
Msa0646050 MtrunA17_Chr3g0078991 26.506 498 326 10 21 481 13 507 1.38e-46 169
Msa0646050 MtrunA17_Chr2g0303731 31.232 349 213 5 26 353 22 364 3.03e-46 169
Msa0646050 MtrunA17_Chr5g0417611 27.383 493 314 11 28 481 22 509 3.68e-46 168
Msa0646050 MtrunA17_Chr8g0376601 32.659 346 198 8 25 343 21 358 9.46e-46 168
Msa0646050 MtrunA17_Chr3g0128081 27.273 484 309 10 31 477 23 500 2.95e-45 166
Msa0646050 MtrunA17_Chr8g0390141 26.358 497 318 12 29 483 26 516 4.70e-45 165
Msa0646050 MtrunA17_Chr6g0486681 24.740 481 324 9 31 477 28 504 5.50e-45 165
Msa0646050 MtrunA17_Chr6g0486671 24.740 481 324 9 31 477 28 504 5.50e-45 165
Msa0646050 MtrunA17_Chr4g0048411 27.158 475 298 10 34 469 27 492 5.61e-45 165
Msa0646050 MtrunA17_Chr3g0115711 26.327 471 302 9 34 466 27 490 1.03e-44 164
Msa0646050 MtrunA17_Chr8g0373191 26.434 488 283 10 16 462 5 457 2.04e-44 162
Msa0646050 MtrunA17_Chr3g0128171 28.283 396 266 7 80 459 46 439 5.25e-43 158
Msa0646050 MtrunA17_Chr3g0078791 28.537 417 256 9 80 478 38 430 1.54e-41 154
Msa0646050 MtrunA17_Chr3g0119401 27.233 459 287 10 30 461 93 531 4.85e-40 151
Msa0646050 MtrunA17_Chr2g0303701 31.858 339 209 6 26 345 22 357 7.62e-40 151
Msa0646050 MtrunA17_Chr3g0121674 30.421 309 185 6 191 479 1 299 2.65e-39 144
Msa0646050 MtrunA17_Chr8g0376631 30.154 325 202 5 26 328 22 343 5.62e-39 149
Msa0646050 MtrunA17_Chr8g0376631 32.031 128 78 2 353 474 446 570 4.97e-12 68.2
Msa0646050 MtrunA17_Chr3g0115731 28.784 403 238 7 88 473 107 477 1.67e-38 146
Msa0646050 MtrunA17_Chr4g0004821 27.368 475 305 10 6 459 14 469 8.97e-37 141
Msa0646050 MtrunA17_Chr6g0486021 27.349 479 304 10 7 459 23 483 1.57e-36 141
Msa0646050 MtrunA17_Chr4g0065351 29.330 358 231 9 148 491 1 350 1.91e-33 130
Msa0646050 MtrunA17_Chr3g0144261 34.468 235 143 5 28 257 2 230 2.95e-33 134
Msa0646050 MtrunA17_Chr3g0144261 27.354 223 149 5 260 473 510 728 8.86e-16 80.5
Msa0646050 MtrunA17_Chr2g0290161 30.464 302 157 5 88 369 21 289 2.09e-32 129
Msa0646050 MtrunA17_Chr2g0290161 36.364 99 63 0 369 467 370 468 3.34e-11 65.5
Msa0646050 MtrunA17_Chr8g0376611 29.670 273 170 6 80 333 12 281 5.28e-31 125
Msa0646050 MtrunA17_Chr8g0376611 36.697 109 62 2 353 459 377 480 1.70e-12 69.7
Msa0646050 MtrunA17_Chr3g0146061 32.806 253 154 7 41 282 15 262 7.84e-30 123
Msa0646050 MtrunA17_Chr3g0146061 29.381 194 124 5 272 456 532 721 6.66e-17 84.0
Msa0646050 MtrunA17_Chr5g0407441 31.418 261 162 8 34 283 8 262 1.70e-26 113
Msa0646050 MtrunA17_Chr5g0407441 28.641 206 134 4 260 456 502 703 9.67e-13 70.9
Msa0646050 MtrunA17_Chr8g0370141 29.457 258 169 8 34 282 8 261 3.62e-26 110
Msa0646050 MtrunA17_Chr5g0404191 30.000 220 141 4 33 249 53 262 1.52e-25 106
Msa0646050 MtrunA17_Chr5g0419321 32.432 185 117 4 52 231 54 235 2.42e-22 100
Msa0646050 MtrunA17_Chr5g0419321 26.442 208 136 4 260 456 528 729 1.04e-12 70.5
Msa0646050 MtrunA17_Chr7g0273261 30.583 206 135 3 273 478 56 253 4.93e-22 95.5
Msa0646050 MtrunA17_Chr5g0434231 31.013 158 83 2 80 237 15 146 1.34e-18 82.8
Msa0646050 MtrunA17_Chr7g0273271 29.545 176 117 2 41 216 38 206 2.65e-16 77.8
Msa0646050 MtrunA17_Chr8g0370151 27.670 206 136 3 260 456 141 342 1.40e-15 78.2
Msa0646050 MtrunA17_Chr1g0183921 24.760 521 308 18 11 458 2 511 1.33e-14 76.3
Msa0646050 MtrunA17_Chr5g0434251 36.697 109 62 2 353 459 33 136 1.91e-13 68.2
Msa0646050 MtrunA17_Chr5g0404181 35.238 105 61 2 361 462 31 131 2.61e-12 64.3
Msa0646050 MtrunA17_Chr2g0319001 23.961 409 255 16 80 457 134 517 6.18e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0646050 AT3G18830.1 68.191 503 128 3 20 490 26 528 0.0 692
Msa0646050 AT2G16120.1 63.340 491 148 3 23 482 19 508 0.0 623
Msa0646050 AT2G16130.1 62.994 481 147 2 23 472 19 499 0.0 614
Msa0646050 AT4G36670.1 54.219 474 187 2 21 464 8 481 6.59e-180 514
Msa0646050 AT2G18480.1 55.208 480 182 4 13 462 7 483 1.66e-174 501
Msa0646050 AT2G20780.1 47.347 490 233 5 8 477 34 518 3.69e-154 449
Msa0646050 AT2G20780.2 47.608 439 206 4 59 477 26 460 2.76e-136 402
Msa0646050 AT2G43330.1 31.677 483 304 6 6 468 5 481 3.23e-66 222
Msa0646050 AT5G17010.1 30.924 498 277 13 13 460 20 500 1.59e-59 204
Msa0646050 AT5G17010.3 30.924 498 277 13 13 460 20 500 1.59e-59 204
Msa0646050 AT5G17010.4 30.924 498 277 13 13 460 20 500 1.59e-59 204
Msa0646050 AT5G59250.1 30.316 475 259 9 35 460 103 554 3.48e-59 204
Msa0646050 AT5G16150.2 33.264 481 279 12 5 459 75 539 1.57e-57 200
Msa0646050 AT5G16150.1 33.264 481 279 12 5 459 75 539 1.57e-57 200
Msa0646050 AT5G16150.3 33.264 481 279 12 5 459 75 539 1.57e-57 200
Msa0646050 AT1G50310.1 28.571 483 302 9 34 480 29 504 4.57e-57 198
Msa0646050 AT3G05150.2 30.185 487 300 10 7 471 8 476 2.03e-55 192
Msa0646050 AT3G19940.1 28.484 488 295 11 34 480 29 503 2.19e-55 193
Msa0646050 AT1G11260.1 27.419 496 317 10 31 490 25 513 1.38e-54 191
Msa0646050 AT5G23270.1 28.719 484 281 11 34 470 28 494 1.59e-54 191
Msa0646050 AT3G05150.1 29.832 476 296 9 7 460 8 467 5.67e-54 188
Msa0646050 AT3G05150.3 29.832 476 296 9 7 460 8 467 5.67e-54 188
Msa0646050 AT5G27360.1 27.848 474 308 9 8 462 10 468 2.03e-53 187
Msa0646050 AT5G27360.3 28.211 475 303 10 8 461 58 515 4.09e-53 187
Msa0646050 AT3G03090.1 29.821 503 286 14 2 460 21 500 1.10e-52 186
Msa0646050 AT5G27350.1 28.838 482 301 12 1 461 3 463 1.29e-52 185
Msa0646050 AT1G54730.2 29.864 442 277 8 41 465 43 468 1.52e-52 184
Msa0646050 AT1G75220.1 28.285 449 294 6 31 462 49 486 3.09e-52 184
Msa0646050 AT5G18840.1 28.390 472 307 8 7 460 18 476 3.16e-52 184
Msa0646050 AT5G26340.1 27.907 473 297 10 34 469 27 492 1.06e-51 184
Msa0646050 AT1G34580.1 28.690 481 296 11 34 473 28 502 5.33e-51 181
Msa0646050 AT3G05165.3 27.557 479 306 10 6 461 2 462 8.34e-51 180
Msa0646050 AT3G05165.2 27.557 479 306 10 6 461 2 462 8.34e-51 180
Msa0646050 AT3G05165.1 27.557 479 306 10 6 461 2 462 8.34e-51 180
Msa0646050 AT1G19450.1 28.062 449 295 6 31 462 50 487 1.39e-50 180
Msa0646050 AT1G34580.2 30.361 415 261 8 81 473 44 452 1.43e-49 176
Msa0646050 AT3G05960.1 27.183 504 317 10 20 480 11 507 5.88e-49 176
Msa0646050 AT3G05160.1 26.580 459 306 7 21 461 8 453 1.85e-48 173
Msa0646050 AT5G26250.1 27.525 505 318 11 14 481 10 503 2.26e-48 174
Msa0646050 AT3G19930.1 26.824 507 328 12 15 486 12 510 7.16e-48 173
Msa0646050 AT3G19930.2 26.824 507 328 12 15 486 12 510 7.16e-48 173
Msa0646050 AT4G21480.1 28.306 484 303 13 25 470 18 495 2.70e-47 171
Msa0646050 AT4G02050.2 27.291 502 319 10 21 482 18 513 2.01e-46 169
Msa0646050 AT4G02050.1 27.291 502 319 10 21 482 18 513 2.01e-46 169
Msa0646050 AT4G04750.1 26.588 425 275 9 58 462 64 471 1.97e-45 166
Msa0646050 AT4G04750.2 26.588 425 275 9 58 462 64 471 1.97e-45 166
Msa0646050 AT4G04750.3 26.588 425 275 9 58 462 108 515 2.16e-45 166
Msa0646050 AT1G54730.3 29.771 393 244 7 41 416 43 420 3.83e-45 164
Msa0646050 AT1G50310.2 30.704 355 223 7 142 480 14 361 4.36e-45 162
Msa0646050 AT2G48020.2 26.338 467 313 8 8 460 10 459 5.67e-45 164
Msa0646050 AT2G48020.1 26.338 467 313 8 8 460 10 459 5.67e-45 164
Msa0646050 AT1G07340.1 27.129 505 325 10 9 478 2 498 5.80e-45 165
Msa0646050 AT4G04760.1 27.594 453 282 11 35 462 36 467 9.41e-45 164
Msa0646050 AT3G05160.3 27.163 416 276 6 60 461 2 404 2.47e-44 161
Msa0646050 AT3G05160.2 27.163 416 276 6 60 461 2 404 2.47e-44 161
Msa0646050 AT4G04760.3 27.804 428 263 11 60 462 2 408 4.70e-44 160
Msa0646050 AT1G77210.2 27.329 483 313 12 29 477 26 504 7.61e-44 162
Msa0646050 AT1G77210.1 27.329 483 313 12 29 477 26 504 7.61e-44 162
Msa0646050 AT5G27360.2 29.155 367 231 7 110 461 11 363 1.24e-43 158
Msa0646050 AT5G27360.5 29.155 367 231 7 110 461 11 363 1.24e-43 158
Msa0646050 AT1G08930.1 26.195 481 309 9 8 460 27 489 4.18e-43 159
Msa0646050 AT1G08930.2 26.195 481 309 9 8 460 27 489 4.18e-43 159
Msa0646050 AT5G17010.2 28.333 480 265 13 7 460 11 437 5.83e-43 158
Msa0646050 AT1G30220.1 31.138 334 207 5 26 338 24 355 8.18e-43 160
Msa0646050 AT1G30220.1 31.356 118 75 1 369 480 463 580 8.08e-14 74.3
Msa0646050 AT1G54730.5 28.182 440 266 9 41 465 43 447 1.11e-42 157
Msa0646050 AT1G05030.1 29.348 460 275 12 30 461 79 516 1.52e-42 159
Msa0646050 AT3G05400.1 27.438 441 283 9 41 462 37 459 5.43e-42 156
Msa0646050 AT3G05155.1 25.986 431 294 7 41 459 38 455 2.41e-41 154
Msa0646050 AT1G08890.1 24.573 468 313 7 21 465 13 463 3.18e-41 154
Msa0646050 AT1G79820.2 29.913 458 279 10 28 462 52 490 6.89e-41 153
Msa0646050 AT1G79820.1 29.913 458 279 10 28 462 52 490 6.89e-41 153
Msa0646050 AT3G05165.4 27.570 428 269 10 6 410 2 411 9.16e-41 152
Msa0646050 AT3G05165.5 27.570 428 269 10 6 410 2 411 9.16e-41 152
Msa0646050 AT4G16480.2 30.055 366 227 6 1 342 1 361 1.57e-40 154
Msa0646050 AT4G16480.2 35.345 116 71 1 369 480 467 582 8.30e-16 80.5
Msa0646050 AT4G16480.3 30.055 366 227 6 1 342 1 361 1.57e-40 154
Msa0646050 AT4G16480.3 35.345 116 71 1 369 480 467 582 8.30e-16 80.5
Msa0646050 AT4G16480.1 30.055 366 227 6 1 342 1 361 1.57e-40 154
Msa0646050 AT4G16480.1 35.345 116 71 1 369 480 467 582 8.30e-16 80.5
Msa0646050 AT3G05165.6 27.570 428 269 10 6 410 2 411 2.69e-40 152
Msa0646050 AT1G08900.3 25.983 458 309 10 22 465 12 453 7.50e-40 150
Msa0646050 AT5G61520.1 24.899 494 326 10 25 477 19 508 1.28e-39 150
Msa0646050 AT2G35740.1 29.014 355 220 7 29 356 25 374 2.06e-39 150
Msa0646050 AT2G35740.1 33.628 113 72 1 369 478 466 578 5.20e-14 75.1
Msa0646050 AT1G67300.2 27.083 480 313 9 6 461 23 489 5.75e-39 148
Msa0646050 AT1G08900.1 25.918 463 311 10 22 465 12 461 7.60e-39 147
Msa0646050 AT1G08900.2 25.918 463 311 10 22 465 12 461 7.60e-39 147
Msa0646050 AT1G54730.9 29.041 365 227 7 41 388 43 392 9.84e-39 146
Msa0646050 AT1G54730.7 29.041 365 227 7 41 388 43 392 9.84e-39 146
Msa0646050 AT1G08900.5 26.540 422 283 9 58 465 11 419 1.08e-38 146
Msa0646050 AT3G05400.2 29.815 379 228 10 104 462 79 439 1.47e-38 146
Msa0646050 AT5G27360.4 26.829 410 267 8 8 398 10 405 3.07e-38 145
Msa0646050 AT1G67300.1 26.598 485 308 10 6 461 23 488 1.75e-37 144
Msa0646050 AT1G67300.3 26.598 485 308 10 6 461 23 488 1.75e-37 144
Msa0646050 AT5G61520.2 26.150 413 285 7 81 477 52 460 1.83e-37 143
Msa0646050 AT4G04760.2 26.049 453 286 12 35 462 36 464 4.07e-37 142
Msa0646050 AT3G20460.1 26.606 436 283 9 45 461 68 485 1.02e-36 142
Msa0646050 AT1G05030.2 28.182 440 266 11 50 461 47 464 1.96e-36 140
Msa0646050 AT1G67300.6 26.852 432 268 10 6 408 23 435 9.41e-36 138
Msa0646050 AT1G67300.7 26.852 432 268 10 6 408 23 435 9.41e-36 138
Msa0646050 AT1G79820.4 30.348 402 242 8 28 408 52 436 1.21e-35 138
Msa0646050 AT1G54730.4 27.877 391 233 8 41 416 43 399 2.23e-35 137
Msa0646050 AT1G67300.4 26.379 417 271 9 6 399 23 426 3.68e-35 136
Msa0646050 AT1G67300.5 26.379 417 271 9 6 399 23 426 3.68e-35 136
Msa0646050 AT3G51490.2 33.969 262 153 8 34 282 8 262 4.12e-35 139
Msa0646050 AT3G51490.2 26.562 256 164 6 217 462 479 720 5.24e-16 81.6
Msa0646050 AT3G51490.1 33.969 262 153 8 34 282 8 262 4.21e-35 139
Msa0646050 AT3G51490.1 25.000 252 165 6 217 462 479 712 8.80e-13 71.2
Msa0646050 AT1G77210.3 27.401 354 240 8 138 477 5 355 1.91e-33 130
Msa0646050 AT1G20840.2 36.364 209 123 4 28 231 2 205 1.54e-32 132
Msa0646050 AT1G20840.2 30.973 226 141 5 260 474 512 733 1.02e-14 77.4
Msa0646050 AT1G20840.1 36.364 209 123 4 28 231 2 205 1.54e-32 132
Msa0646050 AT1G20840.1 30.973 226 141 5 260 474 512 733 1.02e-14 77.4
Msa0646050 AT1G79820.3 28.409 440 261 11 28 462 52 442 1.03e-31 127
Msa0646050 AT1G54730.11 28.713 303 189 5 41 328 43 333 1.37e-31 124
Msa0646050 AT1G08920.1 25.393 445 285 10 41 461 43 464 1.01e-30 124
Msa0646050 AT4G35300.4 34.404 218 132 6 41 252 15 227 1.98e-30 125
Msa0646050 AT4G35300.4 29.075 227 140 4 260 473 519 737 4.44e-18 87.8
Msa0646050 AT4G35300.8 34.404 218 132 6 41 252 15 227 1.98e-30 125
Msa0646050 AT4G35300.8 29.075 227 140 4 260 473 519 737 4.44e-18 87.8
Msa0646050 AT4G35300.6 34.404 218 132 6 41 252 15 227 1.98e-30 125
Msa0646050 AT4G35300.6 29.075 227 140 4 260 473 519 737 4.44e-18 87.8
Msa0646050 AT4G35300.11 34.404 218 132 6 41 252 15 227 1.98e-30 125
Msa0646050 AT4G35300.11 29.075 227 140 4 260 473 519 737 4.44e-18 87.8
Msa0646050 AT4G35300.1 34.404 218 132 6 41 252 15 227 1.98e-30 125
Msa0646050 AT4G35300.1 29.075 227 140 4 260 473 519 737 4.44e-18 87.8
Msa0646050 AT4G35300.10 34.404 218 132 6 41 252 15 227 1.98e-30 125
Msa0646050 AT4G35300.10 29.075 227 140 4 260 473 519 737 4.44e-18 87.8
Msa0646050 AT4G35300.7 34.404 218 132 6 41 252 15 227 1.98e-30 125
Msa0646050 AT4G35300.7 29.075 227 140 4 260 473 519 737 4.44e-18 87.8
Msa0646050 AT4G35300.9 34.404 218 132 6 41 252 15 227 2.27e-30 125
Msa0646050 AT4G35300.9 29.075 227 140 4 260 473 509 727 4.93e-18 87.8
Msa0646050 AT4G35300.2 34.404 218 132 6 41 252 15 227 2.27e-30 125
Msa0646050 AT4G35300.2 29.075 227 140 4 260 473 509 727 4.93e-18 87.8
Msa0646050 AT4G35300.3 34.404 218 132 6 41 252 15 227 2.27e-30 125
Msa0646050 AT4G35300.3 29.075 227 140 4 260 473 509 727 4.93e-18 87.8
Msa0646050 AT1G08900.4 25.604 414 277 9 22 416 12 413 2.87e-29 120
Msa0646050 AT1G54730.8 26.997 363 216 8 41 388 43 371 3.19e-29 119
Msa0646050 AT3G51490.3 34.419 215 125 6 80 282 2 212 1.07e-28 120
Msa0646050 AT3G51490.3 26.562 256 164 6 217 462 429 670 4.76e-16 81.6
Msa0646050 AT1G08920.2 25.000 452 285 11 41 461 43 471 3.42e-28 117
Msa0646050 AT2G48020.4 25.656 343 230 5 23 351 21 352 1.21e-27 114
Msa0646050 AT1G54730.10 27.622 286 183 5 41 310 43 320 7.89e-27 111
Msa0646050 AT1G54730.6 27.622 286 183 5 41 310 43 320 7.89e-27 111
Msa0646050 AT3G05155.2 26.333 300 197 6 41 328 38 325 8.85e-25 105
Msa0646050 AT2G48020.3 24.845 322 217 5 23 330 21 331 3.60e-24 103
Msa0646050 AT1G79820.5 28.696 345 190 11 123 462 87 380 4.31e-23 101
Msa0646050 AT1G08920.3 25.132 378 237 9 41 394 43 398 4.42e-22 99.4
Msa0646050 AT4G35300.5 29.075 227 140 4 260 473 322 540 3.50e-18 87.8

Find 118 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACATCTATTCTCTTAT+TGG 0.104758 4_3:-51627519 Msa0646050:CDS
ATTCAAACACAAAGCTAAAT+TGG 0.143556 4_3:-51626117 Msa0646050:CDS
TCAAAACTATCACTTAAATT+AGG 0.212301 4_3:-51626799 Msa0646050:CDS
TACCATGTGGGGAGACTTAT+TGG 0.273189 4_3:-51628104 Msa0646050:five_prime_UTR
CTTATTGGTTCATGTCTTGC+CGG 0.297122 4_3:-51627504 Msa0646050:CDS
GAAGAAATGGAAGCCTCTTT+TGG 0.298781 4_3:-51625800 Msa0646050:CDS
TTTACCATATCCAAGCAAAA+TGG 0.306531 4_3:+51627824 None:intergenic
CTTGTGGTGTTGTGGTGAAT+AGG 0.316596 4_3:-51625970 Msa0646050:CDS
TAAGGCTCCGGCAAAGAAAA+TGG 0.330343 4_3:+51627431 None:intergenic
TTTGGAGGTATTGCTACAAT+TGG 0.332942 4_3:-51625872 Msa0646050:CDS
CGTTACACCATCGTGTTTGC+CGG 0.353883 4_3:-51627456 Msa0646050:CDS
GGGAAAATTGAGGTCCTCTT+AGG 0.357778 4_3:-51627546 Msa0646050:CDS
CAAGTTGCACAAGTTCAGTT+AGG 0.362764 4_3:-51625725 Msa0646050:CDS
TCTACGATGATGTAAGCTTT+TGG 0.366716 4_3:-51628081 Msa0646050:five_prime_UTR
TTGTAGCAATACCTCCAAAT+AGG 0.368433 4_3:+51625876 None:intergenic
AACTACAACTTCCTCATGTT+TGG 0.374495 4_3:-51627390 Msa0646050:CDS
GAGAAAGCCACGAGAGGAAG+CGG 0.386076 4_3:+51627296 None:intergenic
ACATCGTCGTTGCAATCTTC+AGG 0.387621 4_3:+51626495 None:intergenic
TATGTAGCAACTTTCTCAAT+TGG 0.390137 4_3:-51626061 Msa0646050:CDS
AGGTAAAACACTTGAAGAAA+TGG 0.392070 4_3:-51625813 Msa0646050:CDS
AACTTGCAAGTGGGTTATAT+AGG 0.417404 4_3:+51628058 None:intergenic
GTTAGATCTTAGTACTTAAA+CGG 0.431933 4_3:-51628038 Msa0646050:five_prime_UTR
GACCAATCCAGTCGGAGGTT+CGG 0.442241 4_3:+51627481 None:intergenic
TTCAAACACAAAGCTAAATT+GGG 0.444039 4_3:-51626116 Msa0646050:CDS
GAGACTTCAGCGGTATAGAC+CGG 0.444678 4_3:+51627321 None:intergenic
AGAAAGCCACGAGAGGAAGC+GGG 0.446522 4_3:+51627297 None:intergenic
AACTATCACTTAAATTAGGT+TGG 0.451312 4_3:-51626795 Msa0646050:CDS
AACATGAGGAAGTTGTAGTT+TGG 0.455379 4_3:+51627393 None:intergenic
TTGGAGGTATTGCTACAATT+GGG 0.464188 4_3:-51625871 Msa0646050:CDS
TTGTGGTGTTGTGGTGAATA+GGG 0.468285 4_3:-51625969 Msa0646050:CDS
CCTTTGAGGTTGAGGGCACA+AGG 0.470587 4_3:-51625998 Msa0646050:CDS
AGACTTCAGCGGTATAGACC+GGG 0.470597 4_3:+51627322 None:intergenic
AGCATAGCCGATGCCAACTC+CGG 0.471335 4_3:+51627356 None:intergenic
TGCCAACTCCGGCGACAAAA+CGG 0.474251 4_3:+51627367 None:intergenic
TGGTGAATAGGGTCACTAGT+GGG 0.475348 4_3:-51625958 Msa0646050:CDS
CCTTAGCTGAGCCTCTTCCT+TGG 0.476032 4_3:+51626633 None:intergenic
TTGCCGGCCGAACCTCCGAC+TGG 0.476671 4_3:-51627488 Msa0646050:CDS
ACGAGCCATCGTGGTGACTC+TGG 0.481166 4_3:+51626709 None:intergenic
CTTTGCCGGAGCCTTACTCA+TGG 0.483078 4_3:-51627424 Msa0646050:CDS
ACAAAGCTAAATTGGGCCAT+TGG 0.485743 4_3:-51626109 Msa0646050:CDS
ACTCACTAGTGTTGGTGGTA+TGG 0.486491 4_3:-51626185 Msa0646050:CDS
GAGAAAATCAAAGAATACTA+AGG 0.489393 4_3:-51625768 Msa0646050:CDS
TCCAGCGGCTTGTTTAATCT+CGG 0.492502 4_3:+51626521 None:intergenic
CTGTTACTCACTAGTGTTGG+TGG 0.493290 4_3:-51626190 Msa0646050:CDS
GGCCGAACCTCCGACTGGAT+TGG 0.499701 4_3:-51627483 Msa0646050:CDS
TCCAAGCAAAATGGAAGTCA+TGG 0.500166 4_3:+51627833 None:intergenic
TCTAAAGGAATTACGATTGG+TGG 0.500778 4_3:-51625908 Msa0646050:CDS
TTTGTCGCCGGAGTTGGCAT+CGG 0.500928 4_3:-51627363 Msa0646050:CDS
CTCGTAATGAGAGGTCGTTT+AGG 0.500941 4_3:-51626691 Msa0646050:CDS
TGGTGAGAAACCCATGAGTA+AGG 0.502832 4_3:+51627413 None:intergenic
ACTAAGATCTAACTTGCAAG+TGG 0.507405 4_3:+51628048 None:intergenic
TTTGCCGGAGCCTTACTCAT+GGG 0.509489 4_3:-51627423 Msa0646050:CDS
CTTAACAAATCCAACGGCTA+TGG 0.515197 4_3:+51626267 None:intergenic
CTTATTGCAACCATAGCCGT+TGG 0.515422 4_3:-51626277 Msa0646050:CDS
GCAACTTTCTCAATTGGTGC+AGG 0.518421 4_3:-51626055 Msa0646050:CDS
CAACAAAACTTCAGATTCCA+AGG 0.520556 4_3:-51626650 Msa0646050:CDS
TATCTACTAAGTTGAGACAT+TGG 0.520634 4_3:+51625700 None:intergenic
AATCCAGTCGGAGGTTCGGC+CGG 0.521669 4_3:+51627485 None:intergenic
AAGTTGCACAAGTTCAGTTA+GGG 0.522313 4_3:-51625724 Msa0646050:CDS
AACTTCAGATTCCAAGGAAG+AGG 0.522917 4_3:-51626644 Msa0646050:CDS
ATAAGTCTCCCCACATGGTA+TGG 0.526090 4_3:+51628107 None:intergenic
GAAAGCCACGAGAGGAAGCG+GGG 0.529030 4_3:+51627298 None:intergenic
AAAGCCACGAGAGGAAGCGG+GGG 0.538579 4_3:+51627299 None:intergenic
ACAGTGGACGACGACCATAT+CGG 0.540286 4_3:+51626209 None:intergenic
AGATGTTGATGATTCCTAAG+AGG 0.540995 4_3:+51627532 None:intergenic
CTATGCTCTCATGATTGCCC+CGG 0.541782 4_3:-51627340 Msa0646050:CDS
ATAAACAGTGGAATATTAGT+CGG 0.544490 4_3:-51626844 Msa0646050:CDS
TTAGGTTGGAGAATGATGCT+TGG 0.547667 4_3:-51626781 Msa0646050:CDS
ACTACTATAAACCCATGTGA+TGG 0.549519 4_3:+51626030 None:intergenic
GCCGAGATTAAACAAGCCGC+TGG 0.549761 4_3:-51626522 Msa0646050:CDS
TCCGGCAAAGAAAATGGCGC+CGG 0.556292 4_3:+51627437 None:intergenic
CCTTGTGCCCTCAACCTCAA+AGG 0.562045 4_3:+51625998 None:intergenic
TTGTCTAAAGGAATTACGAT+TGG 0.569189 4_3:-51625911 Msa0646050:CDS
AGGTGCAGCTTGTGGTGTTG+TGG 0.570667 4_3:-51625978 Msa0646050:CDS
GAGGTATTGCTACAATTGGG+TGG 0.571968 4_3:-51625868 Msa0646050:CDS
ACAAAGAGACCTTAAAGTAT+CGG 0.572213 4_3:-51627571 Msa0646050:CDS
GTGGTGAATAGGGTCACTAG+TGG 0.574539 4_3:-51625959 Msa0646050:CDS
CTACTATAAACCCATGTGAT+GGG 0.576148 4_3:+51626031 None:intergenic
TGGCTAAGACTCCAACGGCT+AGG 0.579484 4_3:+51626734 None:intergenic
GAAACCCATGAGTAAGGCTC+CGG 0.584696 4_3:+51627419 None:intergenic
TTGGTGCAGGACCCATCACA+TGG 0.585356 4_3:-51626042 Msa0646050:CDS
AGTATCGGACGGGAAAATTG+AGG 0.585433 4_3:-51627556 Msa0646050:CDS
CCACGATGGCTCGTAATGAG+AGG 0.586462 4_3:-51626700 Msa0646050:CDS
CGACAAAACGGCCAAACATG+AGG 0.587511 4_3:+51627379 None:intergenic
CTTTCTCACTTCTTTCCCAG+AGG 0.589254 4_3:-51627280 Msa0646050:intron
GAGACCTTAAAGTATCGGAC+GGG 0.590431 4_3:-51627566 Msa0646050:CDS
ACAGATATTGGTGTTATGAG+TGG 0.592393 4_3:-51627609 Msa0646050:intron
CCTTCAGTAATCCTAGCCGT+TGG 0.594994 4_3:-51626745 Msa0646050:CDS
AGGGCACAAGGTGCAGCTTG+TGG 0.595043 4_3:-51625986 Msa0646050:CDS
CCATCGTGGTGACTCTGGCA+TGG 0.596487 4_3:+51626714 None:intergenic
CCACTGTTACTCACTAGTGT+TGG 0.601446 4_3:-51626193 Msa0646050:CDS
AGAGACCTTAAAGTATCGGA+CGG 0.606176 4_3:-51627567 Msa0646050:CDS
CCAAGGAAGAGGCTCAGCTA+AGG 0.609894 4_3:-51626633 Msa0646050:intron
TTGAATGATCGATGATCGTA+AGG 0.614986 4_3:+51626134 None:intergenic
CAAAACTACAGCGTCTACAC+CGG 0.619548 4_3:+51626351 None:intergenic
GACCAATAAGTCTCCCCACA+TGG 0.628174 4_3:+51628102 None:intergenic
CAAGGTCTTAACAAATCCAA+CGG 0.634572 4_3:+51626261 None:intergenic
AGTTGCTATACTCAATCCAA+TGG 0.639610 4_3:+51626093 None:intergenic
TGGCATGGCTAAGACTCCAA+CGG 0.641928 4_3:+51626729 None:intergenic
AATGGCGCCGGCAAACACGA+TGG 0.644723 4_3:+51627449 None:intergenic
CCAACGGCTAGGATTACTGA+AGG 0.646658 4_3:+51626745 None:intergenic
CCTCTCATTACGAGCCATCG+TGG 0.646747 4_3:+51626700 None:intergenic
TGGAGAATGATGCTTGGAGT+AGG 0.648761 4_3:-51626775 Msa0646050:CDS
GGTGAATAGGGTCACTAGTG+GGG 0.657688 4_3:-51625957 Msa0646050:CDS
AGAAGTGAGAAAGCCACGAG+AGG 0.660349 4_3:+51627290 None:intergenic
AATCGTAATTCCTTTAGACA+AGG 0.664820 4_3:+51625913 None:intergenic
TGGTGCAGGACCCATCACAT+GGG 0.673212 4_3:-51626041 Msa0646050:CDS
GCAATCTTCAGGTATTCCAG+CGG 0.674448 4_3:+51626506 None:intergenic
CTAAGATCTAACTTGCAAGT+GGG 0.676200 4_3:+51628049 None:intergenic
AGTAGCCACTAAAATAAACA+AGG 0.678884 4_3:+51626243 None:intergenic
TATTGTGTCAAGATGAGTGA+GGG 0.685265 4_3:-51627957 Msa0646050:exon
CCAACACTAGTGAGTAACAG+TGG 0.692907 4_3:+51626193 None:intergenic
GACTTCAGCGGTATAGACCG+GGG 0.704184 4_3:+51627323 None:intergenic
ACGACGACCAATCCAGTCGG+AGG 0.711720 4_3:+51627476 None:intergenic
ATTATGCTTCCTGAAACACA+AGG 0.721140 4_3:-51625833 Msa0646050:CDS
GTAACGACGACCAATCCAGT+CGG 0.738715 4_3:+51627473 None:intergenic
CCATGCCAGAGTCACCACGA+TGG 0.743650 4_3:-51626714 Msa0646050:CDS
ATATTGTGTCAAGATGAGTG+AGG 0.744896 4_3:-51627958 Msa0646050:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATATATAAATATGAGA+TGG + chr4_3:51626073-51626092 None:intergenic 10.0%
!! GAAAAAAATAGATAAATTAA+AGG + chr4_3:51626613-51626632 None:intergenic 10.0%
!! TGATAAATAGAGATAAAAAA+AGG - chr4_3:51626733-51626752 Msa0646050:CDS 15.0%
!! ATAAATAACTCTTATAAAAC+TGG - chr4_3:51626771-51626790 Msa0646050:CDS 15.0%
!!! AATGCATAATTTCTTTTAAA+AGG + chr4_3:51626863-51626882 None:intergenic 15.0%
!!! TATTTTTTTGTCGATAAAAT+AGG - chr4_3:51627310-51627329 Msa0646050:CDS 15.0%
!! ATAACAAGAGGATAAAATAT+TGG + chr4_3:51626192-51626211 None:intergenic 20.0%
!!! TTTTCATTCATAATAACAAG+AGG + chr4_3:51626204-51626223 None:intergenic 20.0%
!! GATAGAATAGTAAATTTCAA+TGG - chr4_3:51626805-51626824 Msa0646050:CDS 20.0%
!! TTCATAATACACGATAATAT+AGG - chr4_3:51626946-51626965 Msa0646050:intron 20.0%
!! TCAAAACTATCACTTAAATT+AGG - chr4_3:51627059-51627078 Msa0646050:intron 20.0%
!! TCAAATTGATCATTTATTCT+CGG + chr4_3:51627255-51627274 None:intergenic 20.0%
! GTTAGATCTTAGTACTTAAA+CGG - chr4_3:51625820-51625839 Msa0646050:CDS 25.0%
!!! AAAGCATACTTGTTTCTTTT+AGG + chr4_3:51625985-51626004 None:intergenic 25.0%
! ATCAACATCTATTCTCTTAT+TGG - chr4_3:51626339-51626358 Msa0646050:CDS 25.0%
!! TTTTCAAAGCTCGTTTATTA+TGG - chr4_3:51626628-51626647 Msa0646050:intron 25.0%
!!! GGAGATTTTTTAGAAGTTAA+TGG - chr4_3:51626672-51626691 Msa0646050:CDS 25.0%
! GAGATAAAAAAAGGTAAAAG+TGG - chr4_3:51626742-51626761 Msa0646050:CDS 25.0%
! TAAATTTCAATGGATGTTAG+TGG - chr4_3:51626815-51626834 Msa0646050:CDS 25.0%
!! TGTTAGTGGAAAATTTGTTT+AGG - chr4_3:51626829-51626848 Msa0646050:CDS 25.0%
!! GTTAGTGGAAAATTTGTTTA+GGG - chr4_3:51626830-51626849 Msa0646050:CDS 25.0%
! GATTCTATATGCAATATATG+TGG + chr4_3:51626900-51626919 None:intergenic 25.0%
!!! TTAATTGATTTGATATCTGC+AGG - chr4_3:51626986-51627005 Msa0646050:intron 25.0%
! ATAAACAGTGGAATATTAGT+CGG - chr4_3:51627014-51627033 Msa0646050:intron 25.0%
! AACTATCACTTAAATTAGGT+TGG - chr4_3:51627063-51627082 Msa0646050:intron 25.0%
! CAAGTAAAAGTTAAAAACAC+TGG - chr4_3:51627390-51627409 Msa0646050:CDS 25.0%
!!! TAAGACCTTGTTTATTTTAG+TGG - chr4_3:51627610-51627629 Msa0646050:intron 25.0%
! ATTCAAACACAAAGCTAAAT+TGG - chr4_3:51627741-51627760 Msa0646050:intron 25.0%
! TTCAAACACAAAGCTAAATT+GGG - chr4_3:51627742-51627761 Msa0646050:intron 25.0%
! GAGAAAATCAAAGAATACTA+AGG - chr4_3:51628090-51628109 Msa0646050:five_prime_UTR 25.0%
! TTCTATTTTACCATACCATG+TGG - chr4_3:51625741-51625760 Msa0646050:CDS 30.0%
! TCTATTTTACCATACCATGT+GGG - chr4_3:51625742-51625761 Msa0646050:CDS 30.0%
! TTTCTTTTAGGCTTCTTTTG+TGG + chr4_3:51625973-51625992 None:intergenic 30.0%
TTTACCATATCCAAGCAAAA+TGG + chr4_3:51626037-51626056 None:intergenic 30.0%
!! GTTTCGCTTTGAAGAAAATT+TGG + chr4_3:51626112-51626131 None:intergenic 30.0%
ACAAAGAGACCTTAAAGTAT+CGG - chr4_3:51626287-51626306 Msa0646050:CDS 30.0%
AAAGTTAAAAACACTGGTGA+AGG - chr4_3:51627396-51627415 Msa0646050:CDS 30.0%
TATTACAATATGACGAACTG+CGG + chr4_3:51627454-51627473 None:intergenic 30.0%
ATATTGTAATAGCTGCACTA+GGG - chr4_3:51627463-51627482 Msa0646050:CDS 30.0%
!!! TCATTTTTTCAACAAGCTTC+CGG - chr4_3:51627488-51627507 Msa0646050:CDS 30.0%
CTACAATCTTCAAAAAAGCT+GGG - chr4_3:51627537-51627556 Msa0646050:CDS 30.0%
AGTAGCCACTAAAATAAACA+AGG + chr4_3:51627618-51627637 None:intergenic 30.0%
! ACTTTTATGTTAGACCGATA+TGG - chr4_3:51627635-51627654 Msa0646050:intron 30.0%
TATGTAGCAACTTTCTCAAT+TGG - chr4_3:51627797-51627816 Msa0646050:intron 30.0%
! GTAGTGAAATTTTTCCTTTG+AGG - chr4_3:51627846-51627865 Msa0646050:CDS 30.0%
!!! AAATTTTTCCTTTGAGGTTG+AGG - chr4_3:51627852-51627871 Msa0646050:CDS 30.0%
!!! AATTTTTCCTTTGAGGTTGA+GGG - chr4_3:51627853-51627872 Msa0646050:CDS 30.0%
AATCGTAATTCCTTTAGACA+AGG + chr4_3:51627948-51627967 None:intergenic 30.0%
TTGTCTAAAGGAATTACGAT+TGG - chr4_3:51627947-51627966 Msa0646050:CDS 30.0%
AGGTAAAACACTTGAAGAAA+TGG - chr4_3:51628045-51628064 Msa0646050:five_prime_UTR 30.0%
! AAGCCTCTTTTGGTAAAATT+TGG - chr4_3:51628068-51628087 Msa0646050:five_prime_UTR 30.0%
! TCTCCAAATTTTACCAAAAG+AGG + chr4_3:51628074-51628093 None:intergenic 30.0%
! CTATTTTACCATACCATGTG+GGG - chr4_3:51625743-51625762 Msa0646050:CDS 35.0%
! TCTACGATGATGTAAGCTTT+TGG - chr4_3:51625777-51625796 Msa0646050:CDS 35.0%
!! AACTTGCAAGTGGGTTATAT+AGG + chr4_3:51625803-51625822 None:intergenic 35.0%
! CTAAGATCTAACTTGCAAGT+GGG + chr4_3:51625812-51625831 None:intergenic 35.0%
! ACTAAGATCTAACTTGCAAG+TGG + chr4_3:51625813-51625832 None:intergenic 35.0%
ATATTGTGTCAAGATGAGTG+AGG - chr4_3:51625900-51625919 Msa0646050:CDS 35.0%
TATTGTGTCAAGATGAGTGA+GGG - chr4_3:51625901-51625920 Msa0646050:CDS 35.0%
! TGCTTTTGCTTGTGCTATAT+TGG - chr4_3:51625999-51626018 Msa0646050:CDS 35.0%
! ACTTCCATTTTGCTTGGATA+TGG - chr4_3:51626030-51626049 Msa0646050:CDS 35.0%
TCTTCAAAGCGAAACAAGTA+TGG - chr4_3:51626117-51626136 Msa0646050:CDS 35.0%
ACACGTCATCATACAGATAT+TGG - chr4_3:51626237-51626256 Msa0646050:CDS 35.0%
!! ACAGATATTGGTGTTATGAG+TGG - chr4_3:51626249-51626268 Msa0646050:CDS 35.0%
!! AGATGTTGATGATTCCTAAG+AGG + chr4_3:51626329-51626348 None:intergenic 35.0%
AACATGAGGAAGTTGTAGTT+TGG + chr4_3:51626468-51626487 None:intergenic 35.0%
AACTACAACTTCCTCATGTT+TGG - chr4_3:51626468-51626487 Msa0646050:CDS 35.0%
CAACAAAACTTCAGATTCCA+AGG - chr4_3:51627208-51627227 Msa0646050:intron 35.0%
ATTACAATATGACGAACTGC+GGG + chr4_3:51627453-51627472 None:intergenic 35.0%
CATATTGTAATAGCTGCACT+AGG - chr4_3:51627462-51627481 Msa0646050:CDS 35.0%
!!! CCAGCTTTTTTGAAGATTGT+AGG + chr4_3:51627539-51627558 None:intergenic 35.0%
CCTACAATCTTCAAAAAAGC+TGG - chr4_3:51627536-51627555 Msa0646050:CDS 35.0%
TTCAAAAAAGCTGGGATCAA+CGG - chr4_3:51627545-51627564 Msa0646050:CDS 35.0%
CAAGGTCTTAACAAATCCAA+CGG + chr4_3:51627600-51627619 None:intergenic 35.0%
TTGAATGATCGATGATCGTA+AGG + chr4_3:51627727-51627746 None:intergenic 35.0%
AGTTGCTATACTCAATCCAA+TGG + chr4_3:51627768-51627787 None:intergenic 35.0%
CTACTATAAACCCATGTGAT+GGG + chr4_3:51627830-51627849 None:intergenic 35.0%
ACTACTATAAACCCATGTGA+TGG + chr4_3:51627831-51627850 None:intergenic 35.0%
! ACTTTTCTGTCCTTGTCTAA+AGG - chr4_3:51627935-51627954 Msa0646050:CDS 35.0%
TCTAAAGGAATTACGATTGG+TGG - chr4_3:51627950-51627969 Msa0646050:exon 35.0%
TTGTAGCAATACCTCCAAAT+AGG + chr4_3:51627985-51628004 None:intergenic 35.0%
!! TTTGGAGGTATTGCTACAAT+TGG - chr4_3:51627986-51628005 Msa0646050:five_prime_UTR 35.0%
!! TTGGAGGTATTGCTACAATT+GGG - chr4_3:51627987-51628006 Msa0646050:five_prime_UTR 35.0%
ATTATGCTTCCTGAAACACA+AGG - chr4_3:51628025-51628044 Msa0646050:five_prime_UTR 35.0%
! AGTGTTTTACCTTGTGTTTC+AGG + chr4_3:51628037-51628056 None:intergenic 35.0%
AAGTTGCACAAGTTCAGTTA+GGG - chr4_3:51628134-51628153 Msa0646050:five_prime_UTR 35.0%
! TCCATGACTTCCATTTTGCT+TGG - chr4_3:51626024-51626043 Msa0646050:CDS 40.0%
TCCAAGCAAAATGGAAGTCA+TGG + chr4_3:51626028-51626047 None:intergenic 40.0%
!! AGAGACCTTAAAGTATCGGA+CGG - chr4_3:51626291-51626310 Msa0646050:CDS 40.0%
! TTTTCCCGTCCGATACTTTA+AGG + chr4_3:51626299-51626318 None:intergenic 40.0%
!! CTTATTGGTTCATGTCTTGC+CGG - chr4_3:51626354-51626373 Msa0646050:CDS 40.0%
TAAAGGTGAGACTAACCTCT+GGG + chr4_3:51626596-51626615 None:intergenic 40.0%
TTAAAGGTGAGACTAACCTC+TGG + chr4_3:51626597-51626616 None:intergenic 40.0%
! CTGCAGGTTTTCATAAACAG+TGG - chr4_3:51627002-51627021 Msa0646050:intron 40.0%
!! TTAGGTTGGAGAATGATGCT+TGG - chr4_3:51627077-51627096 Msa0646050:intron 40.0%
AACTTCAGATTCCAAGGAAG+AGG - chr4_3:51627214-51627233 Msa0646050:intron 40.0%
! AAAACACTGGTGAAGGTGTA+TGG - chr4_3:51627403-51627422 Msa0646050:CDS 40.0%
CTTAACAAATCCAACGGCTA+TGG + chr4_3:51627594-51627613 None:intergenic 40.0%
ACAAAGCTAAATTGGGCCAT+TGG - chr4_3:51627749-51627768 Msa0646050:intron 40.0%
!! TTGTGGTGTTGTGGTGAATA+GGG - chr4_3:51627889-51627908 Msa0646050:CDS 40.0%
! GGTGGTGCATTTTTCCTATT+TGG - chr4_3:51627968-51627987 Msa0646050:five_prime_UTR 40.0%
! GGTGCATTTTTCCTATTTGG+AGG - chr4_3:51627971-51627990 Msa0646050:five_prime_UTR 40.0%
! GAAGAAATGGAAGCCTCTTT+TGG - chr4_3:51628058-51628077 Msa0646050:five_prime_UTR 40.0%
CAAGTTGCACAAGTTCAGTT+AGG - chr4_3:51628133-51628152 Msa0646050:five_prime_UTR 40.0%
ATAAGTCTCCCCACATGGTA+TGG + chr4_3:51625754-51625773 None:intergenic 45.0%
TACCATGTGGGGAGACTTAT+TGG - chr4_3:51625754-51625773 Msa0646050:CDS 45.0%
!! GAGACCTTAAAGTATCGGAC+GGG - chr4_3:51626292-51626311 Msa0646050:CDS 45.0%
! AGTATCGGACGGGAAAATTG+AGG - chr4_3:51626302-51626321 Msa0646050:CDS 45.0%
GGGAAAATTGAGGTCCTCTT+AGG - chr4_3:51626312-51626331 Msa0646050:CDS 45.0%
TAAGGCTCCGGCAAAGAAAA+TGG + chr4_3:51626430-51626449 None:intergenic 45.0%
TGGTGAGAAACCCATGAGTA+AGG + chr4_3:51626448-51626467 None:intergenic 45.0%
CTTTCTCACTTCTTTCCCAG+AGG - chr4_3:51626578-51626597 Msa0646050:intron 45.0%
TGGAGAATGATGCTTGGAGT+AGG - chr4_3:51627083-51627102 Msa0646050:intron 45.0%
CTCGTAATGAGAGGTCGTTT+AGG - chr4_3:51627167-51627186 Msa0646050:intron 45.0%
! TCCAGCGGCTTGTTTAATCT+CGG + chr4_3:51627340-51627359 None:intergenic 45.0%
GCAATCTTCAGGTATTCCAG+CGG + chr4_3:51627355-51627374 None:intergenic 45.0%
ACATCGTCGTTGCAATCTTC+AGG + chr4_3:51627366-51627385 None:intergenic 45.0%
CAAAACTACAGCGTCTACAC+CGG + chr4_3:51627510-51627529 None:intergenic 45.0%
CTTATTGCAACCATAGCCGT+TGG - chr4_3:51627581-51627600 Msa0646050:CDS 45.0%
CCAACACTAGTGAGTAACAG+TGG + chr4_3:51627668-51627687 None:intergenic 45.0%
CCACTGTTACTCACTAGTGT+TGG - chr4_3:51627665-51627684 Msa0646050:intron 45.0%
! CTGTTACTCACTAGTGTTGG+TGG - chr4_3:51627668-51627687 Msa0646050:intron 45.0%
!! ACTCACTAGTGTTGGTGGTA+TGG - chr4_3:51627673-51627692 Msa0646050:intron 45.0%
GCAACTTTCTCAATTGGTGC+AGG - chr4_3:51627803-51627822 Msa0646050:intron 45.0%
!! CTTGTGGTGTTGTGGTGAAT+AGG - chr4_3:51627888-51627907 Msa0646050:CDS 45.0%
TGGTGAATAGGGTCACTAGT+GGG - chr4_3:51627900-51627919 Msa0646050:CDS 45.0%
!! GAGGTATTGCTACAATTGGG+TGG - chr4_3:51627990-51628009 Msa0646050:five_prime_UTR 45.0%
!!! ATTATAAAAAAGTAAATTTT+AGG - chr4_3:51626651-51626670 Msa0646050:CDS 5.0%
GACCAATAAGTCTCCCCACA+TGG + chr4_3:51625759-51625778 None:intergenic 50.0%
TGTGTGTGTGTGTGTGAGAG+AGG - chr4_3:51625871-51625890 Msa0646050:CDS 50.0%
GTAACGACGACCAATCCAGT+CGG + chr4_3:51626388-51626407 None:intergenic 50.0%
CGTTACACCATCGTGTTTGC+CGG - chr4_3:51626402-51626421 Msa0646050:intron 50.0%
TTTGCCGGAGCCTTACTCAT+GGG - chr4_3:51626435-51626454 Msa0646050:intron 50.0%
GAAACCCATGAGTAAGGCTC+CGG + chr4_3:51626442-51626461 None:intergenic 50.0%
CGACAAAACGGCCAAACATG+AGG + chr4_3:51626482-51626501 None:intergenic 50.0%
!! ATGTTTGGCCGTTTTGTCGC+CGG - chr4_3:51626483-51626502 Msa0646050:CDS 50.0%
CTATGCTCTCATGATTGCCC+CGG - chr4_3:51626518-51626537 Msa0646050:CDS 50.0%
AGACTTCAGCGGTATAGACC+GGG + chr4_3:51626539-51626558 None:intergenic 50.0%
GAGACTTCAGCGGTATAGAC+CGG + chr4_3:51626540-51626559 None:intergenic 50.0%
AGAAGTGAGAAAGCCACGAG+AGG + chr4_3:51626571-51626590 None:intergenic 50.0%
CCAACGGCTAGGATTACTGA+AGG + chr4_3:51627116-51627135 None:intergenic 50.0%
CCTTCAGTAATCCTAGCCGT+TGG - chr4_3:51627113-51627132 Msa0646050:intron 50.0%
TGGCATGGCTAAGACTCCAA+CGG + chr4_3:51627132-51627151 None:intergenic 50.0%
ATATGACGAACTGCGGGTGT+AGG + chr4_3:51627447-51627466 None:intergenic 50.0%
ACAGTGGACGACGACCATAT+CGG + chr4_3:51627652-51627671 None:intergenic 50.0%
GTGGTGAATAGGGTCACTAG+TGG - chr4_3:51627899-51627918 Msa0646050:CDS 50.0%
GGTGAATAGGGTCACTAGTG+GGG - chr4_3:51627901-51627920 Msa0646050:CDS 50.0%
GACCAATCCAGTCGGAGGTT+CGG + chr4_3:51626380-51626399 None:intergenic 55.0%
TCCGGCAAAGAAAATGGCGC+CGG + chr4_3:51626424-51626443 None:intergenic 55.0%
CTTTGCCGGAGCCTTACTCA+TGG - chr4_3:51626434-51626453 Msa0646050:intron 55.0%
TGCCAACTCCGGCGACAAAA+CGG + chr4_3:51626494-51626513 None:intergenic 55.0%
TTTGTCGCCGGAGTTGGCAT+CGG - chr4_3:51626495-51626514 Msa0646050:CDS 55.0%
AGCATAGCCGATGCCAACTC+CGG + chr4_3:51626505-51626524 None:intergenic 55.0%
GACTTCAGCGGTATAGACCG+GGG + chr4_3:51626538-51626557 None:intergenic 55.0%
AGAAAGCCACGAGAGGAAGC+GGG + chr4_3:51626564-51626583 None:intergenic 55.0%
GAGAAAGCCACGAGAGGAAG+CGG + chr4_3:51626565-51626584 None:intergenic 55.0%
TGGCTAAGACTCCAACGGCT+AGG + chr4_3:51627127-51627146 None:intergenic 55.0%
CCTCTCATTACGAGCCATCG+TGG + chr4_3:51627161-51627180 None:intergenic 55.0%
CCACGATGGCTCGTAATGAG+AGG - chr4_3:51627158-51627177 Msa0646050:intron 55.0%
CCTTAGCTGAGCCTCTTCCT+TGG + chr4_3:51627228-51627247 None:intergenic 55.0%
CCAAGGAAGAGGCTCAGCTA+AGG - chr4_3:51627225-51627244 Msa0646050:intron 55.0%
GCCGAGATTAAACAAGCCGC+TGG - chr4_3:51627336-51627355 Msa0646050:CDS 55.0%
TTGGTGCAGGACCCATCACA+TGG - chr4_3:51627816-51627835 Msa0646050:intron 55.0%
TGGTGCAGGACCCATCACAT+GGG - chr4_3:51627817-51627836 Msa0646050:intron 55.0%
CCTTGTGCCCTCAACCTCAA+AGG + chr4_3:51627863-51627882 None:intergenic 55.0%
!! CCTTTGAGGTTGAGGGCACA+AGG - chr4_3:51627860-51627879 Msa0646050:CDS 55.0%
! AGGTGCAGCTTGTGGTGTTG+TGG - chr4_3:51627880-51627899 Msa0646050:CDS 55.0%
AATCCAGTCGGAGGTTCGGC+CGG + chr4_3:51626376-51626395 None:intergenic 60.0%
ACGACGACCAATCCAGTCGG+AGG + chr4_3:51626385-51626404 None:intergenic 60.0%
!! AATGGCGCCGGCAAACACGA+TGG + chr4_3:51626412-51626431 None:intergenic 60.0%
!! GCCGGCGCCATTTTCTTTGC+CGG - chr4_3:51626420-51626439 Msa0646050:intron 60.0%
AAAGCCACGAGAGGAAGCGG+GGG + chr4_3:51626562-51626581 None:intergenic 60.0%
GAAAGCCACGAGAGGAAGCG+GGG + chr4_3:51626563-51626582 None:intergenic 60.0%
CCATCGTGGTGACTCTGGCA+TGG + chr4_3:51627147-51627166 None:intergenic 60.0%
CCATGCCAGAGTCACCACGA+TGG - chr4_3:51627144-51627163 Msa0646050:intron 60.0%
ACGAGCCATCGTGGTGACTC+TGG + chr4_3:51627152-51627171 None:intergenic 60.0%
AGGGCACAAGGTGCAGCTTG+TGG - chr4_3:51627872-51627891 Msa0646050:CDS 60.0%
GGCCGAACCTCCGACTGGAT+TGG - chr4_3:51626375-51626394 Msa0646050:intron 65.0%
!! GGCCGTTTTGTCGCCGGAGT+TGG - chr4_3:51626489-51626508 Msa0646050:CDS 65.0%
GGAAGCGGGGGAGACTTCAG+CGG + chr4_3:51626550-51626569 None:intergenic 65.0%
TTGCCGGCCGAACCTCCGAC+TGG - chr4_3:51626370-51626389 Msa0646050:intron 70.0%
GTCTCCCCCGCTTCCTCTCG+TGG - chr4_3:51626555-51626574 Msa0646050:intron 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 51625706 51628174 51625706 ID=Msa0646050;Name=Msa0646050
chr4_3 mRNA 51625706 51628174 51625706 ID=Msa0646050-mRNA-1;Parent=Msa0646050;Name=Msa0646050-mRNA-1;_AED=0.12;_eAED=0.12;_QI=207|0.75|0.6|1|1|1|5|0|493
chr4_3 exon 51625706 51626376 51625706 ID=Msa0646050-mRNA-1:exon:12565;Parent=Msa0646050-mRNA-1
chr4_3 exon 51626463 51626548 51626463 ID=Msa0646050-mRNA-1:exon:12564;Parent=Msa0646050-mRNA-1
chr4_3 exon 51626634 51626872 51626634 ID=Msa0646050-mRNA-1:exon:12563;Parent=Msa0646050-mRNA-1
chr4_3 exon 51627281 51627627 51627281 ID=Msa0646050-mRNA-1:exon:12562;Parent=Msa0646050-mRNA-1
chr4_3 exon 51627829 51628174 51627829 ID=Msa0646050-mRNA-1:exon:12561;Parent=Msa0646050-mRNA-1
chr4_3 five_prime_UTR 51627968 51628174 51627968 ID=Msa0646050-mRNA-1:five_prime_utr;Parent=Msa0646050-mRNA-1
chr4_3 CDS 51627829 51627967 51627829 ID=Msa0646050-mRNA-1:cds;Parent=Msa0646050-mRNA-1
chr4_3 CDS 51627281 51627627 51627281 ID=Msa0646050-mRNA-1:cds;Parent=Msa0646050-mRNA-1
chr4_3 CDS 51626634 51626872 51626634 ID=Msa0646050-mRNA-1:cds;Parent=Msa0646050-mRNA-1
chr4_3 CDS 51626463 51626548 51626463 ID=Msa0646050-mRNA-1:cds;Parent=Msa0646050-mRNA-1
chr4_3 CDS 51625706 51626376 51625706 ID=Msa0646050-mRNA-1:cds;Parent=Msa0646050-mRNA-1
Gene Sequence

>Msa0646050

ATGAGTGAGGGAAAGATAGTTGAAGCAAAAGCTCAAAAAAATCTTCAAGATTTTGATCCACAAAAGAAGCCTAAAAGAAACAAGTATGCTTTTGCTTGTGCTATATTGGCTTCCATGACTTCCATTTTGCTTGGATATGATATTGGTGTTATGAGTGGAGCAGCAATCTACATACAAAGAGACCTTAAAGTATCGGACGGGAAAATTGAGGTCCTCTTAGGAATCATCAACATCTATTCTCTTATTGGTTCATGTCTTGCCGGCCGAACCTCCGACTGGATTGGTCGTCGTTACACCATCGTGTTTGCCGGCGCCATTTTCTTTGCCGGAGCCTTACTCATGGGTTTCTCACCAAACTACAACTTCCTCATGTTTGGCCGTTTTGTCGCCGGAGTTGGCATCGGCTATGCTCTCATGATTGCCCCGGTCTATACCGCTGAAGTCTCCCCCGCTTCCTCTCGTGGCTTTCTCACTTCTTTCCCAGAGGTTTTCATAAACAGTGGAATATTAGTCGGATACATATCAAACTATGCATTTTCAAAACTATCACTTAAATTAGGTTGGAGAATGATGCTTGGAGTAGGTGCAATTCCTTCAGTAATCCTAGCCGTTGGAGTCTTAGCCATGCCAGAGTCACCACGATGGCTCGTAATGAGAGGTCGTTTAGGAGACGCAATAAAAGTACTCAACAAAACTTCAGATTCCAAGGAAGAGGCTCAGCTAAGGTTAGCCGAGATTAAACAAGCCGCTGGAATACCTGAAGATTGCAACGACGATGTTGTTCAAGTAAAAGTTAAAAACACTGGTGAAGCTTCCGGTGTAGACGCTGTAGTTTTGTATAGTCCTACAATCTTCAAAAAAGCTGGGATCAACGGTGATACACATCTTCTTATTGCAACCATAGCCGTTGGATTTGTTAAGACCTTGTTTATTTTAGTGGCTACTTTTATGTTAGACCGATATGGTCGTCGTCCACTGTTACTCACTAGTGTTGGTGGTATGGTAGTCTCGCTTCTCACACTCGCTGTCAGCCTTACGATCATCGATCATTCAAACACAAAGCTAAATTGGGCCATTGGATTGAGTATAGCAACTGTTTTGTCATATGTAGCAACTTTCTCAATTGGTGCAGGACCCATCACATGGGTTTATAGTAGTGAAATTTTTCCTTTGAGGTTGAGGGCACAAGGTGCAGCTTGTGGTGTTGTGGTGAATAGGGTCACTAGTGGGGTTATTTCAATGACTTTTCTGTCCTTGTCTAAAGGAATTACGATTGGTGGTGCATTTTTCCTATTTGGAGGTATTGCTACAATTGGGTGGATATTTTTTTATATTATGCTTCCTGAAACACAAGGTAAAACACTTGAAGAAATGGAAGCCTCTTTTGGTAAAATTTGGAGAAAATCAAAGAATACTAAGGAAGCTGAAAAAGACAATGCTCAAGTTGCACAAGTTCAGTTAGGGACCAATGTCTCAACTTAG
Protein sequence

>Msa0646050

MSEGKIVEAKAQKNLQDFDPQKKPKRNKYAFACAILASMTSILLGYDIGVMSGAAIYIQRDLKVSDGKIEVLLGIINIYSLIGSCLAGRTSDWIGRRYTIVFAGAIFFAGALLMGFSPNYNFLMFGRFVAGVGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINSGILVGYISNYAFSKLSLKLGWRMMLGVGAIPSVILAVGVLAMPESPRWLVMRGRLGDAIKVLNKTSDSKEEAQLRLAEIKQAAGIPEDCNDDVVQVKVKNTGEASGVDAVVLYSPTIFKKAGINGDTHLLIATIAVGFVKTLFILVATFMLDRYGRRPLLLTSVGGMVVSLLTLAVSLTIIDHSNTKLNWAIGLSIATVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGAACGVVVNRVTSGVISMTFLSLSKGITIGGAFFLFGGIATIGWIFFYIMLPETQGKTLEEMEASFGKIWRKSKNTKEAEKDNAQVAQVQLGTNVST*