AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0342860

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0342860 MtrunA17_Chr7g0271391 99.373 638 4 0 1 638 1 638 0.0 1305
Msa0342860 MtrunA17_Chr7g0270601 75.776 161 38 1 12 171 6 166 4.57e-78 256
Msa0342860 MtrunA17_Chr7g0270601 50.000 172 86 0 461 632 292 463 6.53e-47 172
Msa0342860 MtrunA17_Chr3g0098211 48.718 156 76 3 19 173 176 328 2.17e-39 148
Msa0342860 MtrunA17_Chr3g0098211 44.667 150 79 2 17 164 10 157 2.75e-25 107
Msa0342860 MtrunA17_Chr3g0129561 46.980 149 79 0 17 165 55 203 3.23e-38 152
Msa0342860 MtrunA17_Chr1g0155901 43.452 168 85 4 11 169 2 168 6.15e-31 119
Msa0342860 MtrunA17_Chr4g0044701 34.286 245 129 6 19 245 48 278 6.02e-29 121
Msa0342860 MtrunA17_Chr8g0338201 37.037 162 82 5 18 165 33 188 9.13e-21 96.7
Msa0342860 MtrunA17_Chr8g0338651 35.443 158 82 4 22 165 35 186 1.18e-18 90.1
Msa0342860 MtrunA17_Chr4g0055131 35.404 161 85 4 19 165 40 195 4.73e-18 87.8
Msa0342860 MtrunA17_Chr7g0269191 46.000 100 53 1 534 632 9 108 6.80e-18 79.7
Msa0342860 MtrunA17_Chr7g0247681 38.136 118 66 3 54 165 2 118 4.39e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0342860 AT5G61190.4 58.462 260 81 5 8 265 2 236 1.90e-87 288
Msa0342860 AT5G61190.2 58.462 260 81 5 8 265 2 236 1.90e-87 288
Msa0342860 AT3G62200.1 79.762 168 34 0 10 177 21 188 3.11e-87 286
Msa0342860 AT5G61190.8 58.462 260 81 5 8 265 2 236 1.15e-86 289
Msa0342860 AT5G61190.11 58.462 260 81 5 8 265 2 236 5.19e-86 289
Msa0342860 AT5G61190.1 69.307 202 60 2 8 207 2 203 5.81e-86 290
Msa0342860 AT5G61190.10 69.307 202 60 2 8 207 2 203 8.63e-86 289
Msa0342860 AT5G61190.6 58.462 260 81 5 8 265 2 236 1.65e-85 289
Msa0342860 AT5G61190.5 58.462 260 81 5 8 265 2 236 1.67e-85 289
Msa0342860 AT5G61190.9 69.307 202 60 2 8 207 2 203 1.82e-85 289
Msa0342860 AT3G62210.1 73.333 180 45 1 5 181 10 189 1.86e-85 269
Msa0342860 AT5G61180.1 60.674 178 52 1 9 168 72 249 1.25e-69 231
Msa0342860 AT3G61028.3 45.181 166 88 3 15 177 78 243 1.95e-43 157
Msa0342860 AT3G61028.1 45.181 166 88 3 15 177 78 243 1.95e-43 157
Msa0342860 AT3G60940.1 47.429 175 83 3 12 177 76 250 3.86e-43 156
Msa0342860 AT3G60940.2 47.429 175 83 3 12 177 76 250 3.86e-43 156
Msa0342860 AT5G64710.1 42.138 159 91 1 11 168 54 212 1.18e-37 150
Msa0342860 AT5G09840.1 41.935 155 90 0 11 165 65 219 2.86e-37 149
Msa0342860 AT5G61190.7 66.055 109 35 2 101 207 1 109 2.21e-35 143
Msa0342860 AT5G61190.3 66.055 109 35 2 101 207 1 109 2.21e-35 143
Msa0342860 AT2G15560.2 41.290 155 87 3 15 165 46 200 4.55e-27 115
Msa0342860 AT2G15560.1 41.290 155 87 3 15 165 46 200 4.96e-27 115
Msa0342860 AT3G62850.1 30.841 214 131 6 9 211 230 437 6.86e-22 99.8
Msa0342860 AT3G62850.1 31.210 157 102 2 10 163 7 160 3.57e-18 88.2
Msa0342860 AT3G61028.2 40.517 116 67 2 15 128 78 193 1.08e-21 95.5
Msa0342860 AT3G62050.1 36.434 129 73 3 14 139 9 131 4.28e-20 88.2
Msa0342860 AT5G35640.1 31.111 135 88 2 17 147 32 165 7.28e-15 73.9
Msa0342860 AT3G61090.1 29.480 173 106 5 18 180 12 178 2.13e-14 72.4
Msa0342860 AT5G64710.2 41.463 82 47 1 88 168 6 87 3.65e-14 76.3
Msa0342860 AT3G62460.1 29.927 137 88 3 18 149 58 191 6.53e-12 65.5
Msa0342860 AT1G01355.1 32.450 151 96 3 28 174 11 159 1.39e-11 65.1
Msa0342860 AT3G56730.6 33.019 106 65 1 15 120 7 106 2.53e-11 63.2
Msa0342860 AT3G61100.1 28.485 165 98 5 18 170 8 164 2.93e-11 62.8
Msa0342860 AT3G56730.2 30.357 112 72 1 9 120 9 114 3.83e-11 62.8
Msa0342860 AT3G56730.3 30.357 112 72 1 9 120 9 114 3.83e-11 62.8
Msa0342860 AT1G01355.3 31.788 151 93 3 28 174 11 155 4.30e-11 63.5
Msa0342860 AT3G56730.1 32.692 104 64 1 17 120 11 108 8.34e-11 61.6
Msa0342860 AT5G64450.1 35.000 120 64 6 52 162 34 148 9.09e-11 61.6

Find 279 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGAATTATTTATTGATTT+CGG 0.150955 3_1:+877703 Msa0342860:CDS
GCGAATTATTTATTGATTTC+GGG 0.173410 3_1:+877704 Msa0342860:CDS
GGAAAACCGTTTGGTCTTAA+TGG 0.186135 3_1:-878328 None:intergenic
AACAGCACTCCAAAGAAATT+TGG 0.210078 3_1:+879013 Msa0342860:CDS
TCCTTGTCGACATGCTGTTC+TGG 0.215607 3_1:+877660 Msa0342860:CDS
CCAATATCTGGCACAGTTCT+AGG 0.226868 3_1:-878460 None:intergenic
AATTCGTCGTCGGAGATAAA+TGG 0.230773 3_1:+879596 Msa0342860:three_prime_UTR
GTTGCAAAAGTATGGGAATT+TGG 0.231833 3_1:-878388 None:intergenic
GGGATTTGATTCTAGATATC+AGG 0.233096 3_1:+878033 Msa0342860:CDS
AATTTCGTCCCAAATTTCTT+TGG 0.251306 3_1:-879022 None:intergenic
ATACTTATATAGATAAAATT+AGG 0.259196 3_1:+876349 Msa0342860:five_prime_UTR
TTTGCTTAGTTAACTATATA+TGG 0.262422 3_1:-876204 None:intergenic
GGTCTTAATGGCTGGGAATA+TGG 0.268984 3_1:-878316 None:intergenic
ATTTCTTTGGAGTGCTGTTT+AGG 0.279080 3_1:-879009 None:intergenic
GAATATGTACAAGGCCTTAT+AGG 0.288105 3_1:+878751 Msa0342860:CDS
CCATACCAAACTGTAGTATT+TGG 0.290881 3_1:-879663 None:intergenic
TTATCCGGAAATACAGCTTT+TGG 0.291189 3_1:+880291 Msa0342860:three_prime_UTR
TTTCAGGGTGTATTGTAAAA+TGG 0.292307 3_1:+879973 Msa0342860:three_prime_UTR
AGCGTCAAATGAACAAATTC+TGG 0.298140 3_1:-880000 None:intergenic
CTGGCTCTATATACTGAATT+TGG 0.300005 3_1:+880318 Msa0342860:three_prime_UTR
AAGTTTCCATTACCATAATC+AGG 0.300984 3_1:-879400 None:intergenic
ATACGACAGCAATTGGAAAA+AGG 0.302939 3_1:+876092 Msa0342860:five_prime_UTR
CAAACTCTTAATTTGCTATC+TGG 0.304458 3_1:+880119 Msa0342860:three_prime_UTR
ACATCCAAAAGCTGTATTTC+CGG 0.304877 3_1:-880295 None:intergenic
TGTACATATTCAGAAGGTTT+AGG 0.309220 3_1:-878739 None:intergenic
CCTAGAACTGTGCCAGATAT+TGG 0.310900 3_1:+878460 Msa0342860:CDS
TGCTGGTAGATCGGCAATAA+TGG 0.316014 3_1:+879065 Msa0342860:CDS
GCATAGCAGCACCCTGATTA+TGG 0.320572 3_1:+879388 Msa0342860:exon
ACCTCCTCATTCGCAGTTGA+TGG 0.324550 3_1:-877751 None:intergenic
CCGGTGTAGTTGCAAAAGTA+TGG 0.328541 3_1:-878396 None:intergenic
AATGGTAAGTGGGGATCTTC+AGG 0.332723 3_1:+878712 Msa0342860:CDS
CCCGAGTCAAACCCCGATTC+AGG 0.333358 3_1:+879352 Msa0342860:CDS
CCAGCATGAATTTCAGAATA+GGG 0.333740 3_1:-877983 None:intergenic
GCATGTGGATCGGAGCCTTT+AGG 0.345450 3_1:-876531 None:intergenic
ATTTAAATTTACATTTGCTT+TGG 0.350575 3_1:+880422 Msa0342860:three_prime_UTR
AATAATAAACTTCCCTCTAA+TGG 0.351040 3_1:+878694 Msa0342860:CDS
AGATCAACGAATGAACAAAA+TGG 0.352005 3_1:+878592 Msa0342860:CDS
ATATTTCCTTCAATCTATCT+TGG 0.354451 3_1:+879896 Msa0342860:three_prime_UTR
ACAAGGTATGTTTATTATGA+TGG 0.355179 3_1:+880150 Msa0342860:three_prime_UTR
ATGTTCAGATTGCCAATATC+TGG 0.357086 3_1:-878472 None:intergenic
CACTTAAAATTGCACAAGAT+TGG 0.358644 3_1:+880074 Msa0342860:three_prime_UTR
AACATCGGTGTTGCGATGCT+TGG 0.359132 3_1:-878863 None:intergenic
CCTTATTAGACTGGACTACT+TGG 0.359523 3_1:+879819 Msa0342860:three_prime_UTR
CGGTTATCTTGAAGTCCAAC+TGG 0.361639 3_1:-878115 None:intergenic
GATAATTGTTTACATTATTA+CGG 0.362001 3_1:-878135 None:intergenic
GATCCATTATGGAGCAATAA+TGG 0.362238 3_1:+878226 Msa0342860:CDS
CCAAGTAGTCCAGTCTAATA+AGG 0.362296 3_1:-879819 None:intergenic
GATCCACTTTGAGGAACATT+TGG 0.363780 3_1:-878175 None:intergenic
TTACCATTATTGCTCCATAA+TGG 0.363932 3_1:-878229 None:intergenic
TGTTCATTCGTTGATCTTAC+CGG 0.368690 3_1:-878586 None:intergenic
AGAATCATTCGAATAATTAC+TGG 0.374269 3_1:-879480 None:intergenic
AACCGTTTGGTCTTAATGGC+TGG 0.379988 3_1:-878324 None:intergenic
AGGAAATCATCAAAATCAAC+AGG 0.380452 3_1:+878258 Msa0342860:CDS
ATTGGCAATCTGAACATATC+TGG 0.381321 3_1:+878478 Msa0342860:CDS
CGAGCAAAATGTATATTTGT+AGG 0.381945 3_1:-879786 None:intergenic
TGCTGCTCAGACACAGCAAC+AGG 0.385298 3_1:+877955 Msa0342860:CDS
AGGAAATATCTCGACACATT+TGG 0.387421 3_1:-879882 None:intergenic
AGATCCCCACTTACCATTAG+AGG 0.389364 3_1:-878707 None:intergenic
AACATGATTAAGTGAAATTC+CGG 0.391711 3_1:-876673 None:intergenic
GGGAAATCATCAAAATCAAC+AGG 0.391798 3_1:+878279 Msa0342860:CDS
TTCATGGCTTTCGGTCCATT+TGG 0.392243 3_1:-878085 None:intergenic
GGAAGTGGAGCACTACTCTT+AGG 0.394120 3_1:-878565 None:intergenic
TCTCGTATGAATCAAACTAT+AGG 0.394834 3_1:+879509 Msa0342860:three_prime_UTR
AATAAATAATTCGCAGGTGC+AGG 0.398280 3_1:-877695 None:intergenic
CCATTGCATACGACAGCAAT+TGG 0.398911 3_1:+876085 Msa0342860:five_prime_UTR
TTCGTTGATCTTACCGGAAG+TGG 0.402973 3_1:-878580 None:intergenic
TTCGGTCCATTTGGTTGACT+CGG 0.404852 3_1:-878076 None:intergenic
CAGCTAAGAGTGTATGGCTT+TGG 0.407793 3_1:+877825 Msa0342860:CDS
AGCAAATGTAAATTTAAATA+CGG 0.409351 3_1:-880418 None:intergenic
TAAGAGTAGTGCTCCACTTC+CGG 0.410866 3_1:+878567 Msa0342860:CDS
TCTTGCGTATTGCATGGGTT+TGG 0.412229 3_1:-876050 None:intergenic
CAAGTAAAACAACACCTATA+AGG 0.412949 3_1:-878765 None:intergenic
TTCGAAGTTTCAAATGTTGC+AGG 0.413026 3_1:+880028 Msa0342860:three_prime_UTR
TCAGAAGTCACCCCTGAATC+GGG 0.413185 3_1:-879364 None:intergenic
ACTCCGTTGCGGAACAGTGC+GGG 0.413493 3_1:-878524 None:intergenic
TATGATGTTGAATAATTATC+CGG 0.413966 3_1:+880276 Msa0342860:three_prime_UTR
GAGTGTGTAGGTTGATATTC+TGG 0.418613 3_1:-878658 None:intergenic
TATCTCCGACGACGAATTGA+AGG 0.419671 3_1:-879591 None:intergenic
CCTTGTCGACATGCTGTTCT+GGG 0.419680 3_1:+877661 Msa0342860:CDS
GATCCACTGTGATGTATAAC+GGG 0.419901 3_1:-879707 None:intergenic
ACAGCACTCCAAAGAAATTT+GGG 0.420086 3_1:+879014 Msa0342860:CDS
CAGCTACCACTGACATTAAG+AGG 0.421531 3_1:-880385 None:intergenic
CTTCTCAGTTGGCATCATCT+TGG 0.424167 3_1:-878809 None:intergenic
ACATCACAGTGGATCTATCT+TGG 0.424998 3_1:+879715 Msa0342860:three_prime_UTR
GCGCCAATTCTGATCCATTA+TGG 0.426102 3_1:+878215 Msa0342860:CDS
CGAATAATTACTGGTCCAAC+TGG 0.427304 3_1:-879471 None:intergenic
TGAAGAGACTACACAAGATT+CGG 0.427403 3_1:-876172 None:intergenic
GCTCCATAATGGATCAGAAT+TGG 0.428216 3_1:-878218 None:intergenic
CAGCACCCTGATTATGGTAA+TGG 0.428511 3_1:+879394 Msa0342860:three_prime_UTR
CAACAAATACAAGTGAAAAC+TGG 0.432305 3_1:-880577 None:intergenic
CCAATTGCTGTCGTATGCAA+TGG 0.432591 3_1:-876085 None:intergenic
TAGTAAAGGTGAAGAGATTG+AGG 0.432786 3_1:-876239 None:intergenic
ATATCTGGTTATCCCAATAA+TGG 0.432994 3_1:+878493 Msa0342860:CDS
TTGAGGTGGAGAGTAGTGTT+TGG 0.441638 3_1:-876017 None:intergenic
GTATACGACGGCGAAGATAT+CGG 0.442192 3_1:+876479 Msa0342860:CDS
TTGGTGATTTAGTCGCGAAT+TGG 0.443335 3_1:+880337 Msa0342860:three_prime_UTR
CTAAATTCTTCATTGTATCA+TGG 0.446475 3_1:+880614 Msa0342860:three_prime_UTR
ACATCGGTGTTGCGATGCTT+GGG 0.448328 3_1:-878862 None:intergenic
GTCAGAAGTCACCCCTGAAT+CGG 0.449046 3_1:-879365 None:intergenic
GAATGAACAAAATGGACATA+TGG 0.450541 3_1:+878600 Msa0342860:CDS
CCCTGAATCGGGGTTTGACT+CGG 0.450927 3_1:-879353 None:intergenic
TCAGCAACAAGAAATGCAAC+GGG 0.451131 3_1:-880238 None:intergenic
AAATACCAAATACTACAGTT+TGG 0.452518 3_1:+879658 Msa0342860:three_prime_UTR
TCCAGCATGAATTTCAGAAT+AGG 0.452577 3_1:-877984 None:intergenic
TTTCTTCTTGCGTATTGCAT+GGG 0.457197 3_1:-876055 None:intergenic
TATGAATTACTAGGTGCAAA+AGG 0.459744 3_1:-878361 None:intergenic
TTTAGTCGCGAATTGGTCTC+TGG 0.459938 3_1:+880344 Msa0342860:three_prime_UTR
ACCGTTTGGTCTTAATGGCT+GGG 0.462546 3_1:-878323 None:intergenic
CTTTGGACTACTCTCTTAGC+TGG 0.463279 3_1:+877842 Msa0342860:CDS
TGTGTATCACCACTGGTTAG+TGG 0.463529 3_1:-877872 None:intergenic
GGAGTTCTTCCTTATTAGAC+TGG 0.465053 3_1:+879810 Msa0342860:three_prime_UTR
TGGATAATTCATCAGCAGTC+TGG 0.469032 3_1:+879304 Msa0342860:CDS
TGCTGTCGTATGCAATGGGT+CGG 0.469423 3_1:-876080 None:intergenic
ATGGTGGTAAAACAAAATTT+AGG 0.469766 3_1:+878919 Msa0342860:CDS
CCCTCCATCAACTGCGAATG+AGG 0.471098 3_1:+877747 Msa0342860:CDS
GGAGCACTACTCTTAGGATT+CGG 0.471163 3_1:-878559 None:intergenic
CAATTGCTGTCGTATGCAAT+GGG 0.472372 3_1:-876084 None:intergenic
CGACATGCTGTTCTGGGCAG+TGG 0.473730 3_1:+877667 Msa0342860:CDS
ATAACTGATAGCATCCGTTA+TGG 0.474762 3_1:+878835 Msa0342860:CDS
ATTGGCGCGCTCAAAGTTTG+TGG 0.477749 3_1:-878200 None:intergenic
TAGCGATCAATTTGTTTGAT+CGG 0.477979 3_1:+880529 Msa0342860:three_prime_UTR
TTGCAGCAGCTAAGAGTGTA+TGG 0.479275 3_1:+877819 Msa0342860:CDS
ACATTTGGATTATAGTTGCC+AGG 0.480104 3_1:-878160 None:intergenic
GGTTGCAATGGAAAACCGTT+TGG 0.481798 3_1:-878337 None:intergenic
GGTGTCACCGTAGGCGGAGA+TGG 0.483267 3_1:-876610 None:intergenic
GTTGCATTTCTTGTTGCTGA+TGG 0.483586 3_1:+880241 Msa0342860:three_prime_UTR
TAAGATCAGATGGGCGGAGG+TGG 0.484744 3_1:+876432 Msa0342860:exon
TCAGTTATATTCTTCTCAGT+TGG 0.486950 3_1:-878820 None:intergenic
AACTTCCCTCTAATGGTAAG+TGG 0.488285 3_1:+878701 Msa0342860:CDS
TTAGTTTGAATCGATCTTTG+TGG 0.488974 3_1:+876382 Msa0342860:five_prime_UTR
CCGTAGGCGGAGATGGAAAC+GGG 0.489402 3_1:-876603 None:intergenic
TCTATCTTGGTGACCAACCT+TGG 0.490918 3_1:+879909 Msa0342860:three_prime_UTR
CCCGTTTCCATCTCCGCCTA+CGG 0.493859 3_1:+876603 Msa0342860:CDS
GAAAACTGTCATGTTCCTAA+AGG 0.494196 3_1:+876516 Msa0342860:CDS
TGGAAGTGTGTAAATCCCTT+AGG 0.494619 3_1:+878979 Msa0342860:CDS
CAAATGTTCAAAACGGAGGA+AGG 0.495613 3_1:+878011 Msa0342860:CDS
CTGTTTAGGATTTCCACCTA+AGG 0.496032 3_1:-878995 None:intergenic
TATCAAATATATCACTAAAA+CGG 0.496693 3_1:-879844 None:intergenic
CCTACACACTCGACAGCAAT+GGG 0.496891 3_1:+878670 Msa0342860:CDS
TTGGTAAGAATGACAAACTC+TGG 0.500710 3_1:+878959 Msa0342860:CDS
AAATTGTTGCCAACAGTCCT+AGG 0.502255 3_1:-878424 None:intergenic
CCGAGTCAAACCCCGATTCA+GGG 0.503212 3_1:+879353 Msa0342860:CDS
CCCTATTCTGAAATTCATGC+TGG 0.505000 3_1:+877983 Msa0342860:CDS
TTTGGAGAATATGAATTACT+AGG 0.506209 3_1:-878370 None:intergenic
AACAACCCCTGCTGGTAGAT+CGG 0.506607 3_1:+879056 Msa0342860:CDS
CTCCGTTGCGGAACAGTGCG+GGG 0.510872 3_1:-878523 None:intergenic
TCGGTCCATTTGGTTGACTC+GGG 0.511015 3_1:-878075 None:intergenic
ACCGTAGGCGGAGATGGAAA+CGG 0.511972 3_1:-876604 None:intergenic
AATCCAAATGTTCCTCAAAG+TGG 0.513048 3_1:+878172 Msa0342860:CDS
AGATCCACTGTGATGTATAA+CGG 0.515531 3_1:-879708 None:intergenic
TATGGTAATGGAAACTTGAA+AGG 0.516440 3_1:+879406 Msa0342860:three_prime_UTR
AATGTTCAAAACGGAGGAAG+GGG 0.517066 3_1:+878013 Msa0342860:CDS
TAATTCATCAGCAGTCTGGC+TGG 0.517933 3_1:+879308 Msa0342860:CDS
TAATTACTGGTCCAACTGGC+TGG 0.519557 3_1:-879467 None:intergenic
CCAAATACTACAGTTTGGTA+TGG 0.522466 3_1:+879663 Msa0342860:three_prime_UTR
CTATTGCCTCTTAATGTCAG+TGG 0.523753 3_1:+880379 Msa0342860:three_prime_UTR
TGACTCGGGTTTCTCCAAGT+TGG 0.524058 3_1:-878061 None:intergenic
TATTTCTGTAGGTATGAAGC+AGG 0.525565 3_1:+879196 Msa0342860:intron
CCTGAATCGGGGTTTGACTC+GGG 0.525798 3_1:-879352 None:intergenic
GTTGGCAACAATTTCAGTAC+AGG 0.526636 3_1:+878433 Msa0342860:CDS
TCCCAGCCATTAAGACCAAA+CGG 0.527762 3_1:+878322 Msa0342860:CDS
TTTGTGGTTGATCCACTTTG+AGG 0.528704 3_1:-878184 None:intergenic
CAACTACACCGGTGCCACCT+AGG 0.529046 3_1:+878407 Msa0342860:CDS
GATATCAGGGTAGACCAACT+TGG 0.529804 3_1:+878047 Msa0342860:CDS
TTGGATTGAGAGACTTGAGG+TGG 0.530189 3_1:-876031 None:intergenic
ATTATTGCCGATCTACCAGC+AGG 0.530418 3_1:-879063 None:intergenic
CACCGATGTTAAGAAAGCTC+TGG 0.531404 3_1:+878876 Msa0342860:CDS
ACTTCCCTCTAATGGTAAGT+GGG 0.534715 3_1:+878702 Msa0342860:CDS
GGAAATTCAAATGTTCAAAA+CGG 0.536448 3_1:+878004 Msa0342860:CDS
GATCTTTGTGGAATTAAGAT+CGG 0.538325 3_1:+876394 Msa0342860:five_prime_UTR
GAAAGCTCTGGAGAGTGCTA+TGG 0.538754 3_1:+878888 Msa0342860:CDS
CCAACAGTCCTAGGTGGCAC+CGG 0.539658 3_1:-878415 None:intergenic
AGTAAAGGTGAAGAGATTGA+GGG 0.541297 3_1:-876238 None:intergenic
ACAGTTTGGTATGGTTGCTG+AGG 0.542168 3_1:+879672 Msa0342860:three_prime_UTR
ACCTACACACTCGACAGCAA+TGG 0.545629 3_1:+878669 Msa0342860:CDS
AGATCGGAGATAAGATCAGA+TGG 0.545923 3_1:+876422 Msa0342860:exon
GCTGTCGTATGCAATGGGTC+GGG 0.547190 3_1:-876079 None:intergenic
ATAGAGTCAAAGCATAGTAA+AGG 0.547809 3_1:-876253 None:intergenic
TTCAAATCTCCACTCCGTTG+CGG 0.550016 3_1:-878535 None:intergenic
GTCTGAGCAGCATTTGAGAC+AGG 0.550440 3_1:-877944 None:intergenic
TGAATATATCACCAGCCAGT+TGG 0.552081 3_1:+879456 Msa0342860:three_prime_UTR
CAATGCCTTCAATTCGTCGT+CGG 0.554346 3_1:+879586 Msa0342860:three_prime_UTR
AGTTTCCATTACCATAATCA+GGG 0.555080 3_1:-879399 None:intergenic
GGTTATCTTGAAGTCCAACT+GGG 0.555376 3_1:-878114 None:intergenic
CGGTGTAGTTGCAAAAGTAT+GGG 0.556383 3_1:-878395 None:intergenic
CTGCGCAATTGCATGTGGAT+CGG 0.560127 3_1:-876541 None:intergenic
TGTTTAGGATTTCCACCTAA+GGG 0.560176 3_1:-878994 None:intergenic
ATTCAACATCATAACTCTGT+AGG 0.560856 3_1:-880266 None:intergenic
CCGGTGCCACCTAGGACTGT+TGG 0.561100 3_1:+878415 Msa0342860:CDS
GGATTTGATTCTAGATATCA+GGG 0.561545 3_1:+878034 Msa0342860:CDS
CTCTTAGCTGCTGCAACTAG+TGG 0.562484 3_1:-877812 None:intergenic
TGGACTACTCTCTTAGCTGG+AGG 0.562680 3_1:+877845 Msa0342860:CDS
AGGCCTTGTACATATTCAGA+AGG 0.565970 3_1:-878745 None:intergenic
AAATGTTCAAAACGGAGGAA+GGG 0.566489 3_1:+878012 Msa0342860:CDS
GGCGAAGATATCGGTATGGT+GGG 0.567110 3_1:+876488 Msa0342860:CDS
GGTGCTTTAACGCTGTATGT+TGG 0.568779 3_1:+878940 Msa0342860:CDS
ATAAATAATTCGCAGGTGCA+GGG 0.569096 3_1:-877694 None:intergenic
AGAAACCCGAGTCAACCAAA+TGG 0.569109 3_1:+878070 Msa0342860:CDS
CGGCGAAGATATCGGTATGG+TGG 0.569397 3_1:+876487 Msa0342860:CDS
GTGAATGAAAGATATGTACT+TGG 0.570516 3_1:-876129 None:intergenic
TGGTCACCAAGATAGATTGA+AGG 0.573794 3_1:-879902 None:intergenic
ATCAGCAACAAGAAATGCAA+CGG 0.574006 3_1:-880239 None:intergenic
GAAATCAATAAATAATTCGC+AGG 0.575414 3_1:-877701 None:intergenic
CTTCCCTCTAATGGTAAGTG+GGG 0.577253 3_1:+878703 Msa0342860:CDS
TCCTCATTCGCAGTTGATGG+AGG 0.578055 3_1:-877748 None:intergenic
GGTTTGACTCGGGAAGAGTA+AGG 0.583411 3_1:-879342 None:intergenic
GGTGCAAAAGGAGGTTGCAA+TGG 0.586116 3_1:-878349 None:intergenic
CGCACTGTTCCGCAACGGAG+TGG 0.587754 3_1:+878526 Msa0342860:CDS
CTCCAGAGCTTTCTTAACAT+CGG 0.590270 3_1:-878878 None:intergenic
CAGAAGCTTAAGACACAGGA+AGG 0.591686 3_1:-879748 None:intergenic
GATGCTTGGGATCTCCATAA+CGG 0.593120 3_1:-878849 None:intergenic
ATTAAGATCGGAGATAAGAT+CGG 0.593203 3_1:+876406 Msa0342860:five_prime_UTR
ACGAGTGGTGTCACCGTAGG+CGG 0.595030 3_1:-876616 None:intergenic
TGCTCAGACACAGCAACAGG+GGG 0.595588 3_1:+877958 Msa0342860:CDS
CAGCACGCGCTTTCTAGCAC+CGG 0.596449 3_1:+876654 Msa0342860:CDS
GAGTTGTTGTGTATCACCAC+TGG 0.599166 3_1:-877879 None:intergenic
AGATAAGATCAGATGGGCGG+AGG 0.599612 3_1:+876429 Msa0342860:exon
CCTCATTCGCAGTTGATGGA+GGG 0.600072 3_1:-877747 None:intergenic
ACTTGTATAGTTTCAGAAGA+CGG 0.600079 3_1:-877920 None:intergenic
AAACCTTCTGAATATGTACA+AGG 0.601145 3_1:+878742 Msa0342860:CDS
CCCAGAACAGCATGTCGACA+AGG 0.601862 3_1:-877661 None:intergenic
GCTTAGTTAACTATATATGG+TGG 0.605010 3_1:-876201 None:intergenic
TCACTTAATCATGTTCCCGC+CGG 0.605523 3_1:+876681 Msa0342860:CDS
ATGTTAAACAAACAGCTCCA+AGG 0.606915 3_1:-879926 None:intergenic
GCTATCTGGACACAATTACA+AGG 0.607116 3_1:+880133 Msa0342860:three_prime_UTR
GATCCCCACTTACCATTAGA+GGG 0.607911 3_1:-878706 None:intergenic
CACTCCGTTGCGGAACAGTG+CGG 0.607972 3_1:-878525 None:intergenic
AAGTGTGTAAATCCCTTAGG+TGG 0.612305 3_1:+878982 Msa0342860:CDS
TGCTATGGAGCAGCAGATGG+TGG 0.612792 3_1:+878903 Msa0342860:CDS
AAGTTTCAAATGTTGCAGGA+AGG 0.613758 3_1:+880032 Msa0342860:three_prime_UTR
TCACCATGTTCAATATCTGA+AGG 0.616291 3_1:-879267 None:intergenic
CTTGTTCGTATGAACTATTG+TGG 0.616869 3_1:+876579 Msa0342860:CDS
TGAGCAGAAGCTTAAGACAC+AGG 0.619652 3_1:-879752 None:intergenic
TCCGTTGCGGAACAGTGCGG+GGG 0.622717 3_1:-878522 None:intergenic
TCATGGTAATGATATTGCAA+AGG 0.626813 3_1:+880631 Msa0342860:three_prime_UTR
CCCATTGCTGTCGAGTGTGT+AGG 0.626853 3_1:-878670 None:intergenic
CGAGTCAAACCCCGATTCAG+GGG 0.629328 3_1:+879354 Msa0342860:CDS
CGACGGCGAAGATATCGGTA+TGG 0.634124 3_1:+876484 Msa0342860:CDS
AGCAATAATGGTAATCAACA+AGG 0.635068 3_1:+878238 Msa0342860:CDS
CTGCTCAGACACAGCAACAG+GGG 0.637667 3_1:+877957 Msa0342860:CDS
TATTGCCGATCTACCAGCAG+GGG 0.638854 3_1:-879061 None:intergenic
ATATTCTGCGCAATTGCATG+TGG 0.639515 3_1:-876546 None:intergenic
TCGGGAAGAGTAAGGATGAG+TGG 0.640711 3_1:-879334 None:intergenic
GAGTGCTATGGAGCAGCAGA+TGG 0.644619 3_1:+878900 Msa0342860:CDS
TAAACAAACAGCTCCAAGGT+TGG 0.647216 3_1:-879922 None:intergenic
AATTCAAATGTTCAAAACGG+AGG 0.648741 3_1:+878007 Msa0342860:CDS
GCTGCTCAGACACAGCAACA+GGG 0.650440 3_1:+877956 Msa0342860:CDS
AATGTAAACAATTATCGACC+TGG 0.651786 3_1:+878142 Msa0342860:CDS
TCCATCAACTGCGAATGAGG+AGG 0.652227 3_1:+877750 Msa0342860:CDS
GATCGGAGATAAGATCAGAT+GGG 0.656287 3_1:+876423 Msa0342860:exon
ACCACTCAAGGCTATCCACA+TGG 0.657824 3_1:+878634 Msa0342860:CDS
AGCGCGTGCTGTACAGACGC+AGG 0.658760 3_1:-876642 None:intergenic
GTGCATAGCAGTACCACTCA+AGG 0.659605 3_1:+878622 Msa0342860:CDS
GTATCACCACTGGTTAGTGG+AGG 0.662670 3_1:-877869 None:intergenic
GGTTTGGATTGAGAGACTTG+AGG 0.663612 3_1:-876034 None:intergenic
CAGAAGTCACCCCTGAATCG+GGG 0.665735 3_1:-879363 None:intergenic
CGCGGAGGCGCAGTATACGA+CGG 0.668480 3_1:+876467 Msa0342860:CDS
TATACGAGTGGTGTCACCGT+AGG 0.671792 3_1:-876619 None:intergenic
CGGAGATAAGATCAGATGGG+CGG 0.673527 3_1:+876426 Msa0342860:exon
TGTCCTTCAGATATTGAACA+TGG 0.677199 3_1:+879264 Msa0342860:CDS
TTATTGCCGATCTACCAGCA+GGG 0.679539 3_1:-879062 None:intergenic
GAAATCATCAAAATCAACAG+GGG 0.679631 3_1:+878281 Msa0342860:CDS
GTTATCTTGAAGTCCAACTG+GGG 0.686988 3_1:-878113 None:intergenic
AGGTGGAGCGACAACTAACG+CGG 0.688181 3_1:+876449 Msa0342860:CDS
GGAGGACCTCCACTAACCAG+TGG 0.691674 3_1:+877863 Msa0342860:CDS
AGTGAAAACTGGTAATGACA+AGG 0.692144 3_1:-880566 None:intergenic
GGAAATCATCAAAATCAACA+GGG 0.697219 3_1:+878280 Msa0342860:CDS
GGTTGATATTCTGGACCATG+TGG 0.700176 3_1:-878649 None:intergenic
TTATCTTGAAGTCCAACTGG+GGG 0.703666 3_1:-878112 None:intergenic
TACAGACGCAGGTATACGAG+TGG 0.706607 3_1:-876631 None:intergenic
GAATTACTAGGTGCAAAAGG+AGG 0.707826 3_1:-878358 None:intergenic
TGGAGCGACAACTAACGCGG+AGG 0.712925 3_1:+876452 Msa0342860:CDS
TTGTTGCCAACAGTCCTAGG+TGG 0.727786 3_1:-878421 None:intergenic
GGAAATCATCAAAATCAACA+GGG 0.731421 3_1:+878259 Msa0342860:CDS
GCTCAGACACAGCAACAGGG+GGG 0.746430 3_1:+877959 Msa0342860:CDS
ACCATGTGGATAGCCTTGAG+TGG 0.749894 3_1:-878635 None:intergenic
ATCCACTGTGATGTATAACG+GGG 0.757583 3_1:-879706 None:intergenic
TGCCCCGTTATACATCACAG+TGG 0.779311 3_1:+879704 Msa0342860:three_prime_UTR
CAGCAACAAGAAATGCAACG+GGG 0.785002 3_1:-880237 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTTATATAGATAAAATT+AGG + chr3_1:876349-876368 Msa0342860:five_prime_UTR 10.0%
!! GATAATTGTTTACATTATTA+CGG - chr3_1:878138-878157 None:intergenic 15.0%
!!! ATGAATATAGTCTATTTTAT+TGG - chr3_1:879138-879157 None:intergenic 15.0%
!!! ATGAATTATCCATTTTTTAT+GGG - chr3_1:879296-879315 None:intergenic 15.0%
!! TATCAAATATATCACTAAAA+CGG - chr3_1:879847-879866 None:intergenic 15.0%
!! AGCAAATGTAAATTTAAATA+CGG - chr3_1:880421-880440 None:intergenic 15.0%
!! ATTTAAATTTACATTTGCTT+TGG + chr3_1:880422-880441 Msa0342860:three_prime_UTR 15.0%
!! TTTGCTTAGTTAACTATATA+TGG - chr3_1:876207-876226 None:intergenic 20.0%
!!! TTGAATTTTTTCTCAGTATA+AGG + chr3_1:876938-876957 Msa0342860:intron 20.0%
!!! TGCGAATTATTTATTGATTT+CGG + chr3_1:877703-877722 Msa0342860:CDS 20.0%
!!! GATGAATTATCCATTTTTTA+TGG - chr3_1:879297-879316 None:intergenic 20.0%
!!! AGTATAACAAGTATCTTTTT+TGG + chr3_1:879557-879576 Msa0342860:three_prime_UTR 20.0%
!! TATGATGTTGAATAATTATC+CGG + chr3_1:880276-880295 Msa0342860:three_prime_UTR 20.0%
!!! ATTTTCATCTTTCTTTGTAT+TGG + chr3_1:880474-880493 Msa0342860:three_prime_UTR 20.0%
! AACATGATTAAGTGAAATTC+CGG - chr3_1:876676-876695 None:intergenic 25.0%
!! TTCATTTCTGTGATTGATTT+GGG + chr3_1:876828-876847 Msa0342860:intron 25.0%
!!! ATGGTTTTAAATTGTGATTG+CGG + chr3_1:876977-876996 Msa0342860:intron 25.0%
!!! ATTTTATTTATCACGTGATG+CGG + chr3_1:877148-877167 Msa0342860:intron 25.0%
!! GGTATTAAAAATCTGATTTG+TGG + chr3_1:877194-877213 Msa0342860:intron 25.0%
! TTATCAAAATTACACCTCAA+AGG - chr3_1:877362-877381 None:intergenic 25.0%
!!! GAGGTGTAATTTTGATAATT+TGG + chr3_1:877364-877383 Msa0342860:intron 25.0%
!! TGTTGATTGAAAGATAGATT+TGG + chr3_1:877439-877458 Msa0342860:intron 25.0%
! TGTTGAACAGTTAATACATT+TGG + chr3_1:877502-877521 Msa0342860:intron 25.0%
!!! AATTTCACACTATTGATTTG+TGG - chr3_1:877561-877580 None:intergenic 25.0%
!!! GTGTGAAATTTTGATACATT+TGG + chr3_1:877571-877590 Msa0342860:intron 25.0%
!!! CTTTTTTCATGTTTGGTTAT+AGG + chr3_1:877611-877630 Msa0342860:intron 25.0%
! GAAATCAATAAATAATTCGC+AGG - chr3_1:877704-877723 None:intergenic 25.0%
!!! GCGAATTATTTATTGATTTC+GGG + chr3_1:877704-877723 Msa0342860:CDS 25.0%
! GGAAATTCAAATGTTCAAAA+CGG + chr3_1:878004-878023 Msa0342860:CDS 25.0%
! TTTGGAGAATATGAATTACT+AGG - chr3_1:878373-878392 None:intergenic 25.0%
! AATAATAAACTTCCCTCTAA+TGG + chr3_1:878694-878713 Msa0342860:CDS 25.0%
! ATGGTGGTAAAACAAAATTT+AGG + chr3_1:878919-878938 Msa0342860:CDS 25.0%
!!! TGAATCTATTCTATTTCTGT+AGG + chr3_1:879185-879204 Msa0342860:intron 25.0%
!!! TGTTTTAAAGATCTTGCTTT+GGG + chr3_1:879238-879257 Msa0342860:CDS 25.0%
!!! TTACTTTTATGAGTTTTCTC+TGG - chr3_1:879435-879454 None:intergenic 25.0%
! AGAATCATTCGAATAATTAC+TGG - chr3_1:879483-879502 None:intergenic 25.0%
!! TGTAGTATTTGGTATTTTTC+GGG - chr3_1:879655-879674 None:intergenic 25.0%
!! CTGTAGTATTTGGTATTTTT+CGG - chr3_1:879656-879675 None:intergenic 25.0%
! AAATACCAAATACTACAGTT+TGG + chr3_1:879658-879677 Msa0342860:three_prime_UTR 25.0%
!! CTACAAATATACATTTTGCT+CGG + chr3_1:879787-879806 Msa0342860:three_prime_UTR 25.0%
!! TACAAATATACATTTTGCTC+GGG + chr3_1:879788-879807 Msa0342860:three_prime_UTR 25.0%
! ATATTTCCTTCAATCTATCT+TGG + chr3_1:879896-879915 Msa0342860:three_prime_UTR 25.0%
! ACAAGGTATGTTTATTATGA+TGG + chr3_1:880150-880169 Msa0342860:three_prime_UTR 25.0%
!! GTTTTCAACATGATTCAAAA+TGG + chr3_1:880202-880221 Msa0342860:three_prime_UTR 25.0%
! CTAAATTCTTCATTGTATCA+TGG + chr3_1:880614-880633 Msa0342860:three_prime_UTR 25.0%
GTGAATGAAAGATATGTACT+TGG - chr3_1:876132-876151 None:intergenic 30.0%
! GGTTTTTATGGCTATCATTT+TGG - chr3_1:876154-876173 None:intergenic 30.0%
!! TACACAAGATTCGGTTTTTA+TGG - chr3_1:876166-876185 None:intergenic 30.0%
GCTTAGTTAACTATATATGG+TGG - chr3_1:876204-876223 None:intergenic 30.0%
ATAGAGTCAAAGCATAGTAA+AGG - chr3_1:876256-876275 None:intergenic 30.0%
! TTAGTTTGAATCGATCTTTG+TGG + chr3_1:876382-876401 Msa0342860:five_prime_UTR 30.0%
GATCTTTGTGGAATTAAGAT+CGG + chr3_1:876394-876413 Msa0342860:five_prime_UTR 30.0%
ATTAAGATCGGAGATAAGAT+CGG + chr3_1:876406-876425 Msa0342860:five_prime_UTR 30.0%
AGCTATGATTTATGAACTGT+CGG + chr3_1:876749-876768 Msa0342860:intron 30.0%
GTTCATTTCTGTGATTGATT+TGG + chr3_1:876827-876846 Msa0342860:intron 30.0%
!!! ATTGATTTGGGTATTTTACG+CGG + chr3_1:876840-876859 Msa0342860:intron 30.0%
ACTTGTATAGTTTCAGAAGA+CGG - chr3_1:877923-877942 None:intergenic 30.0%
AATTCAAATGTTCAAAACGG+AGG + chr3_1:878007-878026 Msa0342860:CDS 30.0%
GGATTTGATTCTAGATATCA+GGG + chr3_1:878034-878053 Msa0342860:CDS 30.0%
AATGTAAACAATTATCGACC+TGG + chr3_1:878142-878161 Msa0342860:CDS 30.0%
TTACCATTATTGCTCCATAA+TGG - chr3_1:878232-878251 None:intergenic 30.0%
AGCAATAATGGTAATCAACA+AGG + chr3_1:878238-878257 Msa0342860:CDS 30.0%
AGGAAATCATCAAAATCAAC+AGG + chr3_1:878258-878277 Msa0342860:CDS 30.0%
GGAAATCATCAAAATCAACA+GGG + chr3_1:878259-878278 Msa0342860:CDS 30.0%
GGAAATCATCAAAATCAACA+GGG + chr3_1:878259-878278 Msa0342860:CDS 30.0%
GAAATCATCAAAATCAACAG+GGG + chr3_1:878260-878279 Msa0342860:CDS 30.0%
TATGAATTACTAGGTGCAAA+AGG - chr3_1:878364-878383 None:intergenic 30.0%
ATATCTGGTTATCCCAATAA+TGG + chr3_1:878493-878512 Msa0342860:CDS 30.0%
AGATCAACGAATGAACAAAA+TGG + chr3_1:878592-878611 Msa0342860:CDS 30.0%
GAATGAACAAAATGGACATA+TGG + chr3_1:878600-878619 Msa0342860:CDS 30.0%
TGTACATATTCAGAAGGTTT+AGG - chr3_1:878742-878761 None:intergenic 30.0%
AAACCTTCTGAATATGTACA+AGG + chr3_1:878742-878761 Msa0342860:CDS 30.0%
CAAGTAAAACAACACCTATA+AGG - chr3_1:878768-878787 None:intergenic 30.0%
TCAGTTATATTCTTCTCAGT+TGG - chr3_1:878823-878842 None:intergenic 30.0%
AATTTCGTCCCAAATTTCTT+TGG - chr3_1:879025-879044 None:intergenic 30.0%
AGAATAGATTCATCAGAATG+CGG - chr3_1:879177-879196 None:intergenic 30.0%
!!! GTGTTTTAAAGATCTTGCTT+TGG + chr3_1:879237-879256 Msa0342860:CDS 30.0%
TGGTGATAACCCATAAAAAA+TGG + chr3_1:879284-879303 Msa0342860:CDS 30.0%
AGTTTCCATTACCATAATCA+GGG - chr3_1:879402-879421 None:intergenic 30.0%
AAGTTTCCATTACCATAATC+AGG - chr3_1:879403-879422 None:intergenic 30.0%
!! TATGGTAATGGAAACTTGAA+AGG + chr3_1:879406-879425 Msa0342860:three_prime_UTR 30.0%
TCTCGTATGAATCAAACTAT+AGG + chr3_1:879509-879528 Msa0342860:three_prime_UTR 30.0%
CGAGCAAAATGTATATTTGT+AGG - chr3_1:879789-879808 None:intergenic 30.0%
! ACAAATATACATTTTGCTCG+GGG + chr3_1:879789-879808 Msa0342860:three_prime_UTR 30.0%
TTTCAGGGTGTATTGTAAAA+TGG + chr3_1:879973-879992 Msa0342860:three_prime_UTR 30.0%
CACTTAAAATTGCACAAGAT+TGG + chr3_1:880074-880093 Msa0342860:three_prime_UTR 30.0%
!! CAAACTCTTAATTTGCTATC+TGG + chr3_1:880119-880138 Msa0342860:three_prime_UTR 30.0%
ATTCAACATCATAACTCTGT+AGG - chr3_1:880269-880288 None:intergenic 30.0%
! TTTTTAGATGTACTCAGAAC+TGG + chr3_1:880504-880523 Msa0342860:three_prime_UTR 30.0%
! TAGCGATCAATTTGTTTGAT+CGG + chr3_1:880529-880548 Msa0342860:three_prime_UTR 30.0%
CAACAAATACAAGTGAAAAC+TGG - chr3_1:880580-880599 None:intergenic 30.0%
! TCATGGTAATGATATTGCAA+AGG + chr3_1:880631-880650 Msa0342860:three_prime_UTR 30.0%
TTTCTTCTTGCGTATTGCAT+GGG - chr3_1:876058-876077 None:intergenic 35.0%
! TTTTCTTCTTGCGTATTGCA+TGG - chr3_1:876059-876078 None:intergenic 35.0%
ATACGACAGCAATTGGAAAA+AGG + chr3_1:876092-876111 Msa0342860:five_prime_UTR 35.0%
TACGACAGCAATTGGAAAAA+GGG + chr3_1:876093-876112 Msa0342860:five_prime_UTR 35.0%
TGAAGAGACTACACAAGATT+CGG - chr3_1:876175-876194 None:intergenic 35.0%
!!! AGAGATTGAGGGTTTTGTTT+TGG - chr3_1:876230-876249 None:intergenic 35.0%
AGTAAAGGTGAAGAGATTGA+GGG - chr3_1:876241-876260 None:intergenic 35.0%
TAGTAAAGGTGAAGAGATTG+AGG - chr3_1:876242-876261 None:intergenic 35.0%
GAAAACTGTCATGTTCCTAA+AGG + chr3_1:876516-876535 Msa0342860:CDS 35.0%
CTTGTTCGTATGAACTATTG+TGG + chr3_1:876579-876598 Msa0342860:CDS 35.0%
AATCGAAGTAAGTTCGTTAC+CGG - chr3_1:876703-876722 None:intergenic 35.0%
!! AGGTGATTTGATTTGAAGCA+TGG + chr3_1:876958-876977 Msa0342860:intron 35.0%
TATTGTGATAGCTGATACTG+TGG + chr3_1:877016-877035 Msa0342860:intron 35.0%
ATTATAGCCCTGACTTATTG+CGG + chr3_1:877092-877111 Msa0342860:intron 35.0%
TGTGTATTGCTGTAATTTCG+TGG + chr3_1:877124-877143 Msa0342860:intron 35.0%
GTGTATTGCTGTAATTTCGT+GGG + chr3_1:877125-877144 Msa0342860:intron 35.0%
TGGTTCACTTGAAACATTCA+CGG + chr3_1:877459-877478 Msa0342860:intron 35.0%
!! AAACATTCACGGTTGATTTG+TGG + chr3_1:877470-877489 Msa0342860:intron 35.0%
!!! GCTGAAGCTTTTTTCATGTT+TGG + chr3_1:877604-877623 Msa0342860:intron 35.0%
ATAAATAATTCGCAGGTGCA+GGG - chr3_1:877697-877716 None:intergenic 35.0%
AATAAATAATTCGCAGGTGC+AGG - chr3_1:877698-877717 None:intergenic 35.0%
CCAGCATGAATTTCAGAATA+GGG - chr3_1:877986-878005 None:intergenic 35.0%
TCCAGCATGAATTTCAGAAT+AGG - chr3_1:877987-878006 None:intergenic 35.0%
AAATGTTCAAAACGGAGGAA+GGG + chr3_1:878012-878031 Msa0342860:CDS 35.0%
GGGATTTGATTCTAGATATC+AGG + chr3_1:878033-878052 Msa0342860:CDS 35.0%
ACATTTGGATTATAGTTGCC+AGG - chr3_1:878163-878182 None:intergenic 35.0%
AATCCAAATGTTCCTCAAAG+TGG + chr3_1:878172-878191 Msa0342860:CDS 35.0%
GATCCATTATGGAGCAATAA+TGG + chr3_1:878226-878245 Msa0342860:CDS 35.0%
GGGAAATCATCAAAATCAAC+AGG + chr3_1:878279-878298 Msa0342860:CDS 35.0%
! GTTGCAAAAGTATGGGAATT+TGG - chr3_1:878391-878410 None:intergenic 35.0%
ATGTTCAGATTGCCAATATC+TGG - chr3_1:878475-878494 None:intergenic 35.0%
ATTGGCAATCTGAACATATC+TGG + chr3_1:878478-878497 Msa0342860:CDS 35.0%
TGTTCATTCGTTGATCTTAC+CGG - chr3_1:878589-878608 None:intergenic 35.0%
! GAATATGTACAAGGCCTTAT+AGG + chr3_1:878751-878770 Msa0342860:CDS 35.0%
!!! GGCATTTTTTAGTGAGTTCA+GGG - chr3_1:878791-878810 None:intergenic 35.0%
!!! TGGCATTTTTTAGTGAGTTC+AGG - chr3_1:878792-878811 None:intergenic 35.0%
ATAACTGATAGCATCCGTTA+TGG + chr3_1:878835-878854 Msa0342860:CDS 35.0%
TTGGTAAGAATGACAAACTC+TGG + chr3_1:878959-878978 Msa0342860:CDS 35.0%
! TGTTTAGGATTTCCACCTAA+GGG - chr3_1:878997-879016 None:intergenic 35.0%
!! ATTTCTTTGGAGTGCTGTTT+AGG - chr3_1:879012-879031 None:intergenic 35.0%
AACAGCACTCCAAAGAAATT+TGG + chr3_1:879013-879032 Msa0342860:CDS 35.0%
ACAGCACTCCAAAGAAATTT+GGG + chr3_1:879014-879033 Msa0342860:CDS 35.0%
AATAGATTCATCAGAATGCG+GGG - chr3_1:879175-879194 None:intergenic 35.0%
GAATAGATTCATCAGAATGC+GGG - chr3_1:879176-879195 None:intergenic 35.0%
! TATTTCTGTAGGTATGAAGC+AGG + chr3_1:879196-879215 Msa0342860:intron 35.0%
TGTCCTTCAGATATTGAACA+TGG + chr3_1:879264-879283 Msa0342860:CDS 35.0%
TCACCATGTTCAATATCTGA+AGG - chr3_1:879270-879289 None:intergenic 35.0%
CCATACCAAACTGTAGTATT+TGG - chr3_1:879666-879685 None:intergenic 35.0%
CCAAATACTACAGTTTGGTA+TGG + chr3_1:879663-879682 Msa0342860:three_prime_UTR 35.0%
AGATCCACTGTGATGTATAA+CGG - chr3_1:879711-879730 None:intergenic 35.0%
AGGAAATATCTCGACACATT+TGG - chr3_1:879885-879904 None:intergenic 35.0%
ATGTTAAACAAACAGCTCCA+AGG - chr3_1:879929-879948 None:intergenic 35.0%
! TCTACCAAGTCAGATTTTTC+AGG + chr3_1:879957-879976 Msa0342860:three_prime_UTR 35.0%
! CTACCAAGTCAGATTTTTCA+GGG + chr3_1:879958-879977 Msa0342860:three_prime_UTR 35.0%
AGCGTCAAATGAACAAATTC+TGG - chr3_1:880003-880022 None:intergenic 35.0%
TTCGAAGTTTCAAATGTTGC+AGG + chr3_1:880028-880047 Msa0342860:three_prime_UTR 35.0%
AAGTTTCAAATGTTGCAGGA+AGG + chr3_1:880032-880051 Msa0342860:three_prime_UTR 35.0%
ATCAGCAACAAGAAATGCAA+CGG - chr3_1:880242-880261 None:intergenic 35.0%
! TTATCCGGAAATACAGCTTT+TGG + chr3_1:880291-880310 Msa0342860:three_prime_UTR 35.0%
ACATCCAAAAGCTGTATTTC+CGG - chr3_1:880298-880317 None:intergenic 35.0%
! AAATACAGCTTTTGGATGTC+TGG + chr3_1:880299-880318 Msa0342860:three_prime_UTR 35.0%
!! CTGGCTCTATATACTGAATT+TGG + chr3_1:880318-880337 Msa0342860:three_prime_UTR 35.0%
! AGTGAAAACTGGTAATGACA+AGG - chr3_1:880569-880588 None:intergenic 35.0%
CAATTGCTGTCGTATGCAAT+GGG - chr3_1:876087-876106 None:intergenic 40.0%
AGATCGGAGATAAGATCAGA+TGG + chr3_1:876422-876441 Msa0342860:exon 40.0%
GATCGGAGATAAGATCAGAT+GGG + chr3_1:876423-876442 Msa0342860:exon 40.0%
ATATTCTGCGCAATTGCATG+TGG - chr3_1:876549-876568 None:intergenic 40.0%
CGCAGTTTGTACTGTCTATA+TGG + chr3_1:877173-877192 Msa0342860:intron 40.0%
!! CCCTATTCTGAAATTCATGC+TGG + chr3_1:877983-878002 Msa0342860:CDS 40.0%
CAAATGTTCAAAACGGAGGA+AGG + chr3_1:878011-878030 Msa0342860:CDS 40.0%
AATGTTCAAAACGGAGGAAG+GGG + chr3_1:878013-878032 Msa0342860:CDS 40.0%
TTATCTTGAAGTCCAACTGG+GGG - chr3_1:878115-878134 None:intergenic 40.0%
GTTATCTTGAAGTCCAACTG+GGG - chr3_1:878116-878135 None:intergenic 40.0%
GGTTATCTTGAAGTCCAACT+GGG - chr3_1:878117-878136 None:intergenic 40.0%
! GATCCACTTTGAGGAACATT+TGG - chr3_1:878178-878197 None:intergenic 40.0%
TTTGTGGTTGATCCACTTTG+AGG - chr3_1:878187-878206 None:intergenic 40.0%
!! GCTCCATAATGGATCAGAAT+TGG - chr3_1:878221-878240 None:intergenic 40.0%
!! GGAAAACCGTTTGGTCTTAA+TGG - chr3_1:878331-878350 None:intergenic 40.0%
GAATTACTAGGTGCAAAAGG+AGG - chr3_1:878361-878380 None:intergenic 40.0%
! CGGTGTAGTTGCAAAAGTAT+GGG - chr3_1:878398-878417 None:intergenic 40.0%
! CCATACTTTTGCAACTACAC+CGG + chr3_1:878396-878415 Msa0342860:CDS 40.0%
AAATTGTTGCCAACAGTCCT+AGG - chr3_1:878427-878446 None:intergenic 40.0%
GTTGGCAACAATTTCAGTAC+AGG + chr3_1:878433-878452 Msa0342860:CDS 40.0%
!! GAGTGTGTAGGTTGATATTC+TGG - chr3_1:878661-878680 None:intergenic 40.0%
AACTTCCCTCTAATGGTAAG+TGG + chr3_1:878701-878720 Msa0342860:CDS 40.0%
ACTTCCCTCTAATGGTAAGT+GGG + chr3_1:878702-878721 Msa0342860:CDS 40.0%
! AGGCCTTGTACATATTCAGA+AGG - chr3_1:878748-878767 None:intergenic 40.0%
CTCCAGAGCTTTCTTAACAT+CGG - chr3_1:878881-878900 None:intergenic 40.0%
! TGGAAGTGTGTAAATCCCTT+AGG + chr3_1:878979-878998 Msa0342860:CDS 40.0%
AAGTGTGTAAATCCCTTAGG+TGG + chr3_1:878982-879001 Msa0342860:CDS 40.0%
! CTGTTTAGGATTTCCACCTA+AGG - chr3_1:878998-879017 None:intergenic 40.0%
! AATTTTCTAACAACCCCTGC+TGG + chr3_1:879048-879067 Msa0342860:CDS 40.0%
! AGAATGCGGGGATATCTTTT+AGG - chr3_1:879163-879182 None:intergenic 40.0%
TGGATAATTCATCAGCAGTC+TGG + chr3_1:879304-879323 Msa0342860:CDS 40.0%
TGAATATATCACCAGCCAGT+TGG + chr3_1:879456-879475 Msa0342860:three_prime_UTR 40.0%
CGAATAATTACTGGTCCAAC+TGG - chr3_1:879474-879493 None:intergenic 40.0%
AATTCGTCGTCGGAGATAAA+TGG + chr3_1:879596-879615 Msa0342860:three_prime_UTR 40.0%
ATCCACTGTGATGTATAACG+GGG - chr3_1:879709-879728 None:intergenic 40.0%
GATCCACTGTGATGTATAAC+GGG - chr3_1:879710-879729 None:intergenic 40.0%
ACATCACAGTGGATCTATCT+TGG + chr3_1:879715-879734 Msa0342860:three_prime_UTR 40.0%
GGAGTTCTTCCTTATTAGAC+TGG + chr3_1:879810-879829 Msa0342860:three_prime_UTR 40.0%
CCAAGTAGTCCAGTCTAATA+AGG - chr3_1:879822-879841 None:intergenic 40.0%
CCTTATTAGACTGGACTACT+TGG + chr3_1:879819-879838 Msa0342860:three_prime_UTR 40.0%
TGGTCACCAAGATAGATTGA+AGG - chr3_1:879905-879924 None:intergenic 40.0%
TAAACAAACAGCTCCAAGGT+TGG - chr3_1:879925-879944 None:intergenic 40.0%
ACACCCTGAAAAATCTGACT+TGG - chr3_1:879964-879983 None:intergenic 40.0%
GCTATCTGGACACAATTACA+AGG + chr3_1:880133-880152 Msa0342860:three_prime_UTR 40.0%
TCAGCAACAAGAAATGCAAC+GGG - chr3_1:880241-880260 None:intergenic 40.0%
GTTGCATTTCTTGTTGCTGA+TGG + chr3_1:880241-880260 Msa0342860:three_prime_UTR 40.0%
! TTGGTGATTTAGTCGCGAAT+TGG + chr3_1:880337-880356 Msa0342860:three_prime_UTR 40.0%
CTATTGCCTCTTAATGTCAG+TGG + chr3_1:880379-880398 Msa0342860:three_prime_UTR 40.0%
TTGAGGTGGAGAGTAGTGTT+TGG - chr3_1:876020-876039 None:intergenic 45.0%
TTGGATTGAGAGACTTGAGG+TGG - chr3_1:876034-876053 None:intergenic 45.0%
GGTTTGGATTGAGAGACTTG+AGG - chr3_1:876037-876056 None:intergenic 45.0%
TCTTGCGTATTGCATGGGTT+TGG - chr3_1:876053-876072 None:intergenic 45.0%
CCAATTGCTGTCGTATGCAA+TGG - chr3_1:876088-876107 None:intergenic 45.0%
CCATTGCATACGACAGCAAT+TGG + chr3_1:876085-876104 Msa0342860:five_prime_UTR 45.0%
GTATACGACGGCGAAGATAT+CGG + chr3_1:876479-876498 Msa0342860:CDS 45.0%
TCACTTAATCATGTTCCCGC+CGG + chr3_1:876681-876700 Msa0342860:CDS 45.0%
TTTGACGAGAATCAGCAACG+TGG + chr3_1:876883-876902 Msa0342860:intron 45.0%
!! GATTGCGGTAGAAGTTGATG+TGG + chr3_1:876992-877011 Msa0342860:intron 45.0%
GCAAACACCGCAATAAGTCA+GGG - chr3_1:877102-877121 None:intergenic 45.0%
TCACTTGTTTGCCTTTCTCG+AGG + chr3_1:877234-877253 Msa0342860:intron 45.0%
CTTCCTTTCTTGAGCCTTTG+AGG + chr3_1:877345-877364 Msa0342860:intron 45.0%
ACACCTCAAAGGCTCAAGAA+AGG - chr3_1:877351-877370 None:intergenic 45.0%
!! AGTGGTGCAGATGCTTTTTG+AGG - chr3_1:877797-877816 None:intergenic 45.0%
! TTGCAGCAGCTAAGAGTGTA+TGG + chr3_1:877819-877838 Msa0342860:CDS 45.0%
! CAGCTAAGAGTGTATGGCTT+TGG + chr3_1:877825-877844 Msa0342860:CDS 45.0%
CTTTGGACTACTCTCTTAGC+TGG + chr3_1:877842-877861 Msa0342860:CDS 45.0%
! TGTGTATCACCACTGGTTAG+TGG - chr3_1:877875-877894 None:intergenic 45.0%
GAGTTGTTGTGTATCACCAC+TGG - chr3_1:877882-877901 None:intergenic 45.0%
GATATCAGGGTAGACCAACT+TGG + chr3_1:878047-878066 Msa0342860:CDS 45.0%
AGAAACCCGAGTCAACCAAA+TGG + chr3_1:878070-878089 Msa0342860:CDS 45.0%
TTCGGTCCATTTGGTTGACT+CGG - chr3_1:878079-878098 None:intergenic 45.0%
TTCATGGCTTTCGGTCCATT+TGG - chr3_1:878088-878107 None:intergenic 45.0%
CGGTTATCTTGAAGTCCAAC+TGG - chr3_1:878118-878137 None:intergenic 45.0%
GCGCCAATTCTGATCCATTA+TGG + chr3_1:878215-878234 Msa0342860:CDS 45.0%
GGTCTTAATGGCTGGGAATA+TGG - chr3_1:878319-878338 None:intergenic 45.0%
TCCCAGCCATTAAGACCAAA+CGG + chr3_1:878322-878341 Msa0342860:CDS 45.0%
!! ACCGTTTGGTCTTAATGGCT+GGG - chr3_1:878326-878345 None:intergenic 45.0%
!! AACCGTTTGGTCTTAATGGC+TGG - chr3_1:878327-878346 None:intergenic 45.0%
GGTTGCAATGGAAAACCGTT+TGG - chr3_1:878340-878359 None:intergenic 45.0%
CCGGTGTAGTTGCAAAAGTA+TGG - chr3_1:878399-878418 None:intergenic 45.0%
CCAATATCTGGCACAGTTCT+AGG - chr3_1:878463-878482 None:intergenic 45.0%
CCTAGAACTGTGCCAGATAT+TGG + chr3_1:878460-878479 Msa0342860:CDS 45.0%
CGGGGGTTATGACCATTATT+GGG - chr3_1:878508-878527 None:intergenic 45.0%
TTCAAATCTCCACTCCGTTG+CGG - chr3_1:878538-878557 None:intergenic 45.0%
! GGAGCACTACTCTTAGGATT+CGG - chr3_1:878562-878581 None:intergenic 45.0%
TAAGAGTAGTGCTCCACTTC+CGG + chr3_1:878567-878586 Msa0342860:CDS 45.0%
TTCGTTGATCTTACCGGAAG+TGG - chr3_1:878583-878602 None:intergenic 45.0%
! GGTTGATATTCTGGACCATG+TGG - chr3_1:878652-878671 None:intergenic 45.0%
CTTCCCTCTAATGGTAAGTG+GGG + chr3_1:878703-878722 Msa0342860:CDS 45.0%
GATCCCCACTTACCATTAGA+GGG - chr3_1:878709-878728 None:intergenic 45.0%
AGATCCCCACTTACCATTAG+AGG - chr3_1:878710-878729 None:intergenic 45.0%
AATGGTAAGTGGGGATCTTC+AGG + chr3_1:878712-878731 Msa0342860:CDS 45.0%
CTTCTCAGTTGGCATCATCT+TGG - chr3_1:878812-878831 None:intergenic 45.0%
GATGCTTGGGATCTCCATAA+CGG - chr3_1:878852-878871 None:intergenic 45.0%
CACCGATGTTAAGAAAGCTC+TGG + chr3_1:878876-878895 Msa0342860:CDS 45.0%
GGTGCTTTAACGCTGTATGT+TGG + chr3_1:878940-878959 Msa0342860:CDS 45.0%
TTATTGCCGATCTACCAGCA+GGG - chr3_1:879065-879084 None:intergenic 45.0%
ATTATTGCCGATCTACCAGC+AGG - chr3_1:879066-879085 None:intergenic 45.0%
TGCTGGTAGATCGGCAATAA+TGG + chr3_1:879065-879084 Msa0342860:CDS 45.0%
TAATTCATCAGCAGTCTGGC+TGG + chr3_1:879308-879327 Msa0342860:CDS 45.0%
CAGCACCCTGATTATGGTAA+TGG + chr3_1:879394-879413 Msa0342860:three_prime_UTR 45.0%
TAATTACTGGTCCAACTGGC+TGG - chr3_1:879470-879489 None:intergenic 45.0%
CAATGCCTTCAATTCGTCGT+CGG + chr3_1:879586-879605 Msa0342860:three_prime_UTR 45.0%
TATCTCCGACGACGAATTGA+AGG - chr3_1:879594-879613 None:intergenic 45.0%
ACAGTTTGGTATGGTTGCTG+AGG + chr3_1:879672-879691 Msa0342860:three_prime_UTR 45.0%
CAGAAGCTTAAGACACAGGA+AGG - chr3_1:879751-879770 None:intergenic 45.0%
TGAGCAGAAGCTTAAGACAC+AGG - chr3_1:879755-879774 None:intergenic 45.0%
! TCTATCTTGGTGACCAACCT+TGG + chr3_1:879909-879928 Msa0342860:three_prime_UTR 45.0%
CAGCAACAAGAAATGCAACG+GGG - chr3_1:880240-880259 None:intergenic 45.0%
! TTTAGTCGCGAATTGGTCTC+TGG + chr3_1:880344-880363 Msa0342860:three_prime_UTR 45.0%
CAGCTACCACTGACATTAAG+AGG - chr3_1:880388-880407 None:intergenic 45.0%
TGCTGTCGTATGCAATGGGT+CGG - chr3_1:876083-876102 None:intergenic 50.0%
CGGAGATAAGATCAGATGGG+CGG + chr3_1:876426-876445 Msa0342860:exon 50.0%
AGATAAGATCAGATGGGCGG+AGG + chr3_1:876429-876448 Msa0342860:exon 50.0%
GGCGAAGATATCGGTATGGT+GGG + chr3_1:876488-876507 Msa0342860:CDS 50.0%
CTGCGCAATTGCATGTGGAT+CGG - chr3_1:876544-876563 None:intergenic 50.0%
!! TATACGAGTGGTGTCACCGT+AGG - chr3_1:876622-876641 None:intergenic 50.0%
TACAGACGCAGGTATACGAG+TGG - chr3_1:876634-876653 None:intergenic 50.0%
GAAGTAAGTTCGTTACCGGC+GGG - chr3_1:876699-876718 None:intergenic 50.0%
CGAAGTAAGTTCGTTACCGG+CGG - chr3_1:876700-876719 None:intergenic 50.0%
! TGTGTGTTGCTGTGATTGCG+CGG + chr3_1:877048-877067 Msa0342860:intron 50.0%
CGCAAACACCGCAATAAGTC+AGG - chr3_1:877103-877122 None:intergenic 50.0%
TTGCCTTTCTCGAGGCTTTG+AGG + chr3_1:877242-877261 Msa0342860:intron 50.0%
ACACCTCAAAGCCTCGAGAA+AGG - chr3_1:877248-877267 None:intergenic 50.0%
TCCTTGTCGACATGCTGTTC+TGG + chr3_1:877660-877679 Msa0342860:CDS 50.0%
CCTTGTCGACATGCTGTTCT+GGG + chr3_1:877661-877680 Msa0342860:CDS 50.0%
!! CCTCATTCGCAGTTGATGGA+GGG - chr3_1:877750-877769 None:intergenic 50.0%
!! TCCTCATTCGCAGTTGATGG+AGG - chr3_1:877751-877770 None:intergenic 50.0%
TCCATCAACTGCGAATGAGG+AGG + chr3_1:877750-877769 Msa0342860:CDS 50.0%
ACCTCCTCATTCGCAGTTGA+TGG - chr3_1:877754-877773 None:intergenic 50.0%
CTCTTAGCTGCTGCAACTAG+TGG - chr3_1:877815-877834 None:intergenic 50.0%
TGGACTACTCTCTTAGCTGG+AGG + chr3_1:877845-877864 Msa0342860:CDS 50.0%
! GTATCACCACTGGTTAGTGG+AGG - chr3_1:877872-877891 None:intergenic 50.0%
! GTCTGAGCAGCATTTGAGAC+AGG - chr3_1:877947-877966 None:intergenic 50.0%
! TGACTCGGGTTTCTCCAAGT+TGG - chr3_1:878064-878083 None:intergenic 50.0%
! TCGGTCCATTTGGTTGACTC+GGG - chr3_1:878078-878097 None:intergenic 50.0%
ATTGGCGCGCTCAAAGTTTG+TGG - chr3_1:878203-878222 None:intergenic 50.0%
GGTGCAAAAGGAGGTTGCAA+TGG - chr3_1:878352-878371 None:intergenic 50.0%
TTGTTGCCAACAGTCCTAGG+TGG - chr3_1:878424-878443 None:intergenic 50.0%
GCGGGGGTTATGACCATTAT+TGG - chr3_1:878509-878528 None:intergenic 50.0%
! GGAAGTGGAGCACTACTCTT+AGG - chr3_1:878568-878587 None:intergenic 50.0%
GTGCATAGCAGTACCACTCA+AGG + chr3_1:878622-878641 Msa0342860:CDS 50.0%
ACCACTCAAGGCTATCCACA+TGG + chr3_1:878634-878653 Msa0342860:CDS 50.0%
! ACCATGTGGATAGCCTTGAG+TGG - chr3_1:878638-878657 None:intergenic 50.0%
ACCTACACACTCGACAGCAA+TGG + chr3_1:878669-878688 Msa0342860:CDS 50.0%
CCTACACACTCGACAGCAAT+GGG + chr3_1:878670-878689 Msa0342860:CDS 50.0%
!! ACATCGGTGTTGCGATGCTT+GGG - chr3_1:878865-878884 None:intergenic 50.0%
!! AACATCGGTGTTGCGATGCT+TGG - chr3_1:878866-878885 None:intergenic 50.0%
!! GAAAGCTCTGGAGAGTGCTA+TGG + chr3_1:878888-878907 Msa0342860:CDS 50.0%
AACAACCCCTGCTGGTAGAT+CGG + chr3_1:879056-879075 Msa0342860:CDS 50.0%
TATTGCCGATCTACCAGCAG+GGG - chr3_1:879064-879083 None:intergenic 50.0%
TCGGGAAGAGTAAGGATGAG+TGG - chr3_1:879337-879356 None:intergenic 50.0%
!! GGTTTGACTCGGGAAGAGTA+AGG - chr3_1:879345-879364 None:intergenic 50.0%
TCAGAAGTCACCCCTGAATC+GGG - chr3_1:879367-879386 None:intergenic 50.0%
GTCAGAAGTCACCCCTGAAT+CGG - chr3_1:879368-879387 None:intergenic 50.0%
GCATAGCAGCACCCTGATTA+TGG + chr3_1:879388-879407 Msa0342860:exon 50.0%
TGCCCCGTTATACATCACAG+TGG + chr3_1:879704-879723 Msa0342860:three_prime_UTR 50.0%
GCTGTCGTATGCAATGGGTC+GGG - chr3_1:876082-876101 None:intergenic 55.0%
TAAGATCAGATGGGCGGAGG+TGG + chr3_1:876432-876451 Msa0342860:exon 55.0%
AGGTGGAGCGACAACTAACG+CGG + chr3_1:876449-876468 Msa0342860:CDS 55.0%
CGACGGCGAAGATATCGGTA+TGG + chr3_1:876484-876503 Msa0342860:CDS 55.0%
CGGCGAAGATATCGGTATGG+TGG + chr3_1:876487-876506 Msa0342860:CDS 55.0%
GCATGTGGATCGGAGCCTTT+AGG - chr3_1:876534-876553 None:intergenic 55.0%
ACCGTAGGCGGAGATGGAAA+CGG - chr3_1:876607-876626 None:intergenic 55.0%
! GTGTGTTGCTGTGATTGCGC+GGG + chr3_1:877049-877068 Msa0342860:intron 55.0%
CCCAGAACAGCATGTCGACA+AGG - chr3_1:877664-877683 None:intergenic 55.0%
CCCTCCATCAACTGCGAATG+AGG + chr3_1:877747-877766 Msa0342860:CDS 55.0%
TGCTGCTCAGACACAGCAAC+AGG + chr3_1:877955-877974 Msa0342860:CDS 55.0%
GCTGCTCAGACACAGCAACA+GGG + chr3_1:877956-877975 Msa0342860:CDS 55.0%
CTGCTCAGACACAGCAACAG+GGG + chr3_1:877957-877976 Msa0342860:CDS 55.0%
TGCTCAGACACAGCAACAGG+GGG + chr3_1:877958-877977 Msa0342860:CDS 55.0%
! GGGGGTGGATTCATGGCTTT+CGG - chr3_1:878097-878116 None:intergenic 55.0%
! TCCAACTGGGGGTGGATTCA+TGG - chr3_1:878104-878123 None:intergenic 55.0%
TCTTGAAGTCCAACTGGGGG+TGG - chr3_1:878112-878131 None:intergenic 55.0%
CCCATTGCTGTCGAGTGTGT+AGG - chr3_1:878673-878692 None:intergenic 55.0%
GAGTGCTATGGAGCAGCAGA+TGG + chr3_1:878900-878919 Msa0342860:CDS 55.0%
TGCTATGGAGCAGCAGATGG+TGG + chr3_1:878903-878922 Msa0342860:CDS 55.0%
CCTGAATCGGGGTTTGACTC+GGG - chr3_1:879355-879374 None:intergenic 55.0%
CCCTGAATCGGGGTTTGACT+CGG - chr3_1:879356-879375 None:intergenic 55.0%
CCGAGTCAAACCCCGATTCA+GGG + chr3_1:879353-879372 Msa0342860:CDS 55.0%
CGAGTCAAACCCCGATTCAG+GGG + chr3_1:879354-879373 Msa0342860:CDS 55.0%
CAGAAGTCACCCCTGAATCG+GGG - chr3_1:879366-879385 None:intergenic 55.0%
TGGAGCGACAACTAACGCGG+AGG + chr3_1:876452-876471 Msa0342860:CDS 60.0%
CCGTAGGCGGAGATGGAAAC+GGG - chr3_1:876606-876625 None:intergenic 60.0%
CCCGTTTCCATCTCCGCCTA+CGG + chr3_1:876603-876622 Msa0342860:CDS 60.0%
!! ACGAGTGGTGTCACCGTAGG+CGG - chr3_1:876619-876638 None:intergenic 60.0%
! CAGCACGCGCTTTCTAGCAC+CGG + chr3_1:876654-876673 Msa0342860:CDS 60.0%
! CGACATGCTGTTCTGGGCAG+TGG + chr3_1:877667-877686 Msa0342860:CDS 60.0%
GGAGGACCTCCACTAACCAG+TGG + chr3_1:877863-877882 Msa0342860:CDS 60.0%
GCTCAGACACAGCAACAGGG+GGG + chr3_1:877959-877978 Msa0342860:CDS 60.0%
GCCATGAATCCACCCCCAGT+TGG + chr3_1:878100-878119 Msa0342860:CDS 60.0%
!! CAACTACACCGGTGCCACCT+AGG + chr3_1:878407-878426 Msa0342860:CDS 60.0%
CCAACAGTCCTAGGTGGCAC+CGG - chr3_1:878418-878437 None:intergenic 60.0%
ACTCCGTTGCGGAACAGTGC+GGG - chr3_1:878527-878546 None:intergenic 60.0%
CACTCCGTTGCGGAACAGTG+CGG - chr3_1:878528-878547 None:intergenic 60.0%
CCCGAGTCAAACCCCGATTC+AGG + chr3_1:879352-879371 Msa0342860:CDS 60.0%
! CGCGGAGGCGCAGTATACGA+CGG + chr3_1:876467-876486 Msa0342860:CDS 65.0%
! GGTGTCACCGTAGGCGGAGA+TGG - chr3_1:876613-876632 None:intergenic 65.0%
AGCGCGTGCTGTACAGACGC+AGG - chr3_1:876645-876664 None:intergenic 65.0%
!! CCGGTGCCACCTAGGACTGT+TGG + chr3_1:878415-878434 Msa0342860:CDS 65.0%
ACCCCCGCACTGTTCCGCAA+CGG + chr3_1:878521-878540 Msa0342860:CDS 65.0%
TCCGTTGCGGAACAGTGCGG+GGG - chr3_1:878525-878544 None:intergenic 65.0%
CTCCGTTGCGGAACAGTGCG+GGG - chr3_1:878526-878545 None:intergenic 65.0%
CGCACTGTTCCGCAACGGAG+TGG + chr3_1:878526-878545 Msa0342860:CDS 65.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 876016 880665 876016 ID=Msa0342860;Name=Msa0342860
chr3_1 mRNA 876016 880665 876016 ID=Msa0342860-mRNA-1;Parent=Msa0342860;Name=Msa0342860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=425|1|1|1|1|1|3|1272|638
chr3_1 exon 876016 876702 876016 ID=Msa0342860-mRNA-1:exon:158;Parent=Msa0342860-mRNA-1
chr3_1 exon 877633 879100 877633 ID=Msa0342860-mRNA-1:exon:159;Parent=Msa0342860-mRNA-1
chr3_1 exon 879207 880665 879207 ID=Msa0342860-mRNA-1:exon:160;Parent=Msa0342860-mRNA-1
chr3_1 five_prime_UTR 876016 876440 876016 ID=Msa0342860-mRNA-1:five_prime_utr;Parent=Msa0342860-mRNA-1
chr3_1 CDS 876441 876702 876441 ID=Msa0342860-mRNA-1:cds;Parent=Msa0342860-mRNA-1
chr3_1 CDS 877633 879100 877633 ID=Msa0342860-mRNA-1:cds;Parent=Msa0342860-mRNA-1
chr3_1 CDS 879207 879393 879207 ID=Msa0342860-mRNA-1:cds;Parent=Msa0342860-mRNA-1
chr3_1 three_prime_UTR 879394 880665 879394 ID=Msa0342860-mRNA-1:three_prime_utr;Parent=Msa0342860-mRNA-1
Gene Sequence

>Msa0342860

ATGGGCGGAGGTGGAGCGACAACTAACGCGGAGGCGCAGTATACGACGGCGAAGATATCGGTATGGTGGGATATAGAAAACTGTCATGTTCCTAAAGGCTCCGATCCACATGCAATTGCGCAGAATATCAGTTCAGCACTTGTTCGTATGAACTATTGTGGTCCCGTTTCCATCTCCGCCTACGGTGACACCACTCGTATACCTGCGTCTGTACAGCACGCGCTTTCTAGCACCGGAATTTCACTTAATCATGTTCCCGCCGGTGTGAAAGATGCAAGCGATAAGAAAATCCTTGTCGACATGCTGTTCTGGGCAGTGGACAACCCTGCACCTGCGAATTATTTATTGATTTCGGGTGATCGAGATTTTTCTAATGCCCTCCATCAACTGCGAATGAGGAGGTATAATATTCTTCTCGCACAACCTCAAAAAGCATCTGCACCACTAGTTGCAGCAGCTAAGAGTGTATGGCTTTGGACTACTCTCTTAGCTGGAGGACCTCCACTAACCAGTGGTGATACACAACAACTCAGTAATAGTAGCTTCTTACCGTCTTCTGAAACTATACAAGTTCCTGTCTCAAATGCTGCTCAGACACAGCAACAGGGGGGTCCCTATTCTGAAATTCATGCTGGAAATTCAAATGTTCAAAACGGAGGAAGGGGATTTGATTCTAGATATCAGGGTAGACCAACTTGGAGAAACCCGAGTCAACCAAATGGACCGAAAGCCATGAATCCACCCCCAGTTGGACTTCAAGATAACCGTAATAATGTAAACAATTATCGACCTGGCAACTATAATCCAAATGTTCCTCAAAGTGGATCAACCACAAACTTTGAGCGCGCCAATTCTGATCCATTATGGAGCAATAATGGTAATCAACAAGGAAATCATCAAAATCAACAGGGAAATCATCAAAATCAACAGGGGAATCATCAAAATCCATATTCCCAGCCATTAAGACCAAACGGTTTTCCATTGCAACCTCCTTTTGCACCTAGTAATTCATATTCTCCAAATTCCCATACTTTTGCAACTACACCGGTGCCACCTAGGACTGTTGGCAACAATTTCAGTACAGGATCACCTAGAACTGTGCCAGATATTGGCAATCTGAACATATCTGGTTATCCCAATAATGGTCATAACCCCCGCACTGTTCCGCAACGGAGTGGAGATTTGAAACCGAATCCTAAGAGTAGTGCTCCACTTCCGGTAAGATCAACGAATGAACAAAATGGACATATGGTGCATAGCAGTACCACTCAAGGCTATCCACATGGTCCAGAATATCAACCTACACACTCGACAGCAATGGGTAATAATAAACTTCCCTCTAATGGTAAGTGGGGATCTTCAGGTTGTCCTAAACCTTCTGAATATGTACAAGGCCTTATAGGTGTTGTTTTACTTGCCCTGAACTCACTAAAAAATGCCAAGATGATGCCAACTGAGAAGAATATAACTGATAGCATCCGTTATGGAGATCCCAAGCATCGCAACACCGATGTTAAGAAAGCTCTGGAGAGTGCTATGGAGCAGCAGATGGTGGTAAAACAAAATTTAGGTGCTTTAACGCTGTATGTTGGTAAGAATGACAAACTCTGGAAGTGTGTAAATCCCTTAGGTGGAAATCCTAAACAGCACTCCAAAGAAATTTGGGACGAAATTCAAAATTTTCTAACAACCCCTGCTGGTAGATCGGCAATAATGGATACACAGTGCAAGTATGAAGCAGGTATTGTGATAAAGAGCATGTGTTTTAAAGATCTTGCTTTGGGCGATGTCCTTCAGATATTGAACATGGTGATAACCCATAAAAAATGGATAATTCATCAGCAGTCTGGCTGGCAACCACTCATCCTTACTCTTCCCGAGTCAAACCCCGATTCAGGGGTGACTTCTGACGCATAG
Protein sequence

>Msa0342860

MGGGGATTNAEAQYTTAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTTLLAGGPPLTSGDTQQLSNSSFLPSSETIQVPVSNAAQTQQQGGPYSEIHAGNSNVQNGGRGFDSRYQGRPTWRNPSQPNGPKAMNPPPVGLQDNRNNVNNYRPGNYNPNVPQSGSTTNFERANSDPLWSNNGNQQGNHQNQQGNHQNQQGNHQNPYSQPLRPNGFPLQPPFAPSNSYSPNSHTFATTPVPPRTVGNNFSTGSPRTVPDIGNLNISGYPNNGHNPRTVPQRSGDLKPNPKSSAPLPVRSTNEQNGHMVHSSTTQGYPHGPEYQPTHSTAMGNNKLPSNGKWGSSGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEKNITDSIRYGDPKHRNTDVKKALESAMEQQMVVKQNLGALTLYVGKNDKLWKCVNPLGGNPKQHSKEIWDEIQNFLTTPAGRSAIMDTQCKYEAGIVIKSMCFKDLALGDVLQILNMVITHKKWIIHQQSGWQPLILTLPESNPDSGVTSDA*