AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1386270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386270 MtrunA17_Chr4g0034681 93.295 522 6 1 1 493 1 522 0.0 968
Msa1386270 MtrunA17_Chr3g0144361 76.639 488 83 1 13 469 11 498 0.0 755
Msa1386270 MtrunA17_Chr4g0036021 70.633 521 119 4 1 493 1 515 0.0 721
Msa1386270 MtrunA17_Chr8g0373531 55.967 486 181 4 27 481 16 499 0.0 522
Msa1386270 MtrunA17_Chr5g0432581 52.675 486 196 4 25 479 14 496 1.69e-179 513
Msa1386270 MtrunA17_Chr6g0485661 51.050 476 210 4 2 454 27 502 1.37e-168 485
Msa1386270 MtrunA17_Chr2g0282031 49.487 487 210 4 22 486 45 517 2.88e-162 469
Msa1386270 MtrunA17_Chr4g0021771 45.473 497 241 5 12 488 41 527 3.79e-150 439
Msa1386270 MtrunA17_Chr8g0390521 49.563 458 208 4 27 462 15 471 3.79e-147 430
Msa1386270 MtrunA17_Chr5g0403831 44.578 498 240 4 1 464 2 497 1.42e-141 416
Msa1386270 MtrunA17_Chr7g0214451 30.675 489 308 10 17 481 18 499 2.04e-67 224
Msa1386270 MtrunA17_Chr1g0213611 30.849 483 303 9 17 473 63 540 3.01e-66 223
Msa1386270 MtrunA17_Chr4g0039651 31.919 495 276 14 13 460 18 498 5.83e-64 215
Msa1386270 MtrunA17_Chr1g0213631 31.435 439 274 9 49 468 4 434 8.38e-60 203
Msa1386270 MtrunA17_Chr3g0115781 28.893 488 299 11 34 481 29 508 2.15e-57 198
Msa1386270 MtrunA17_Chr7g0250881 31.478 467 290 11 11 459 45 499 4.92e-57 197
Msa1386270 MtrunA17_Chr5g0394341 28.542 487 307 9 34 484 26 507 2.90e-56 195
Msa1386270 MtrunA17_Chr4g0032021 30.480 479 275 14 26 460 88 552 3.39e-56 196
Msa1386270 MtrunA17_Chr6g0457781 32.360 445 264 11 36 459 111 539 8.91e-56 195
Msa1386270 MtrunA17_Chr3g0115721 28.157 483 306 8 34 479 27 505 1.21e-54 191
Msa1386270 MtrunA17_Chr3g0115741 27.216 485 308 9 34 479 30 508 4.26e-53 187
Msa1386270 MtrunA17_Chr5g0420841 28.854 506 313 13 20 484 10 509 5.61e-53 186
Msa1386270 MtrunA17_Chr7g0259471 28.664 464 304 6 12 461 22 472 7.69e-53 185
Msa1386270 MtrunA17_Chr4g0065311 28.846 468 297 10 31 466 23 486 1.00e-51 182
Msa1386270 MtrunA17_Chr4g0066581 28.571 469 307 8 10 462 30 486 2.99e-51 181
Msa1386270 MtrunA17_Chr1g0155221 28.855 454 284 8 32 462 51 488 1.25e-50 179
Msa1386270 MtrunA17_Chr1g0205691 28.310 491 302 10 19 469 11 491 1.31e-50 180
Msa1386270 MtrunA17_Chr8g0373181 27.093 454 289 8 33 462 50 485 1.40e-50 179
Msa1386270 MtrunA17_Chr3g0115751 27.975 479 305 8 34 476 32 506 6.70e-50 178
Msa1386270 MtrunA17_Chr3g0085971 28.655 513 319 11 11 479 2 511 7.00e-50 178
Msa1386270 MtrunA17_Chr1g0205671 27.021 470 304 9 34 469 27 491 1.08e-49 177
Msa1386270 MtrunA17_Chr5g0445601 28.392 479 302 11 23 466 20 492 1.91e-49 177
Msa1386270 MtrunA17_Chr4g0065324 27.975 479 308 9 21 466 20 494 1.99e-49 177
Msa1386270 MtrunA17_Chr7g0273281 28.959 442 287 8 35 462 67 495 1.08e-48 174
Msa1386270 MtrunA17_Chr5g0437021 28.628 503 311 11 21 483 14 508 1.08e-48 175
Msa1386270 MtrunA17_Chr7g0257631 29.228 479 298 11 23 466 54 526 1.21e-48 175
Msa1386270 MtrunA17_Chr1g0205681 26.216 473 309 8 34 468 27 497 3.04e-48 173
Msa1386270 MtrunA17_Chr8g0390261 25.662 491 325 10 29 483 26 512 3.88e-48 173
Msa1386270 MtrunA17_Chr2g0286721 29.157 439 277 8 41 461 60 482 4.58e-48 172
Msa1386270 MtrunA17_Chr7g0259221 28.602 465 303 8 12 461 24 474 5.03e-48 172
Msa1386270 MtrunA17_Chr2g0290181 31.549 355 215 5 22 351 19 370 1.18e-47 173
Msa1386270 MtrunA17_Chr2g0290181 37.374 99 62 0 369 467 463 561 1.30e-14 76.3
Msa1386270 MtrunA17_Chr3g0078971 25.097 514 339 11 6 484 3 505 3.78e-47 171
Msa1386270 MtrunA17_Chr4g0048051 27.778 486 277 12 34 467 27 490 4.61e-47 170
Msa1386270 MtrunA17_Chr1g0164851 27.505 509 316 11 1 470 1 495 5.72e-47 171
Msa1386270 MtrunA17_Chr1g0164871 27.096 513 321 11 1 474 1 499 6.68e-47 170
Msa1386270 MtrunA17_Chr3g0078991 26.305 498 327 9 21 481 13 507 1.24e-46 169
Msa1386270 MtrunA17_Chr2g0303731 31.232 349 213 5 26 353 22 364 2.77e-46 169
Msa1386270 MtrunA17_Chr5g0417611 27.383 493 314 11 28 481 22 509 4.16e-46 168
Msa1386270 MtrunA17_Chr8g0376601 32.659 346 198 8 25 343 21 358 1.01e-45 167
Msa1386270 MtrunA17_Chr3g0128081 27.273 484 309 10 31 477 23 500 2.59e-45 166
Msa1386270 MtrunA17_Chr8g0390141 26.358 497 318 12 29 483 26 516 3.88e-45 165
Msa1386270 MtrunA17_Chr4g0048411 27.158 475 298 10 34 469 27 492 5.66e-45 165
Msa1386270 MtrunA17_Chr6g0486681 24.740 481 324 9 31 477 28 504 6.81e-45 164
Msa1386270 MtrunA17_Chr6g0486671 24.740 481 324 9 31 477 28 504 6.81e-45 164
Msa1386270 MtrunA17_Chr3g0115711 26.327 471 302 9 34 466 27 490 9.49e-45 164
Msa1386270 MtrunA17_Chr8g0373191 26.434 488 283 10 16 462 5 457 1.94e-44 162
Msa1386270 MtrunA17_Chr3g0128171 28.283 396 266 7 80 459 46 439 4.46e-43 158
Msa1386270 MtrunA17_Chr3g0078791 28.537 417 256 9 80 478 38 430 1.62e-41 154
Msa1386270 MtrunA17_Chr3g0119401 27.887 459 284 11 30 461 93 531 4.10e-40 152
Msa1386270 MtrunA17_Chr2g0303701 31.858 339 209 6 26 345 22 357 7.40e-40 151
Msa1386270 MtrunA17_Chr3g0121674 30.421 309 185 6 191 479 1 299 3.60e-39 144
Msa1386270 MtrunA17_Chr8g0376631 30.154 325 202 5 26 328 22 343 5.51e-39 149
Msa1386270 MtrunA17_Chr8g0376631 32.031 128 78 2 353 474 446 570 5.10e-12 68.2
Msa1386270 MtrunA17_Chr3g0115731 28.784 403 238 7 88 473 107 477 1.56e-38 146
Msa1386270 MtrunA17_Chr4g0004821 26.947 475 307 9 6 459 14 469 8.79e-37 141
Msa1386270 MtrunA17_Chr6g0486021 27.349 479 304 10 7 459 23 483 2.05e-36 140
Msa1386270 MtrunA17_Chr4g0065351 29.330 358 231 9 148 491 1 350 2.58e-33 129
Msa1386270 MtrunA17_Chr3g0144261 34.468 235 143 5 28 257 2 230 3.04e-33 134
Msa1386270 MtrunA17_Chr3g0144261 27.354 223 149 5 260 473 510 728 8.86e-16 80.5
Msa1386270 MtrunA17_Chr2g0290161 30.464 302 157 5 88 369 21 289 1.72e-32 129
Msa1386270 MtrunA17_Chr2g0290161 36.364 99 63 0 369 467 370 468 3.17e-11 65.5
Msa1386270 MtrunA17_Chr8g0376611 29.670 273 170 6 80 333 12 281 5.18e-31 125
Msa1386270 MtrunA17_Chr8g0376611 36.697 109 62 2 353 459 377 480 1.72e-12 69.7
Msa1386270 MtrunA17_Chr3g0146061 32.806 253 154 7 41 282 15 262 8.67e-30 123
Msa1386270 MtrunA17_Chr3g0146061 29.381 194 124 5 272 456 532 721 6.72e-17 84.0
Msa1386270 MtrunA17_Chr5g0407441 31.418 261 162 8 34 283 8 262 1.70e-26 113
Msa1386270 MtrunA17_Chr5g0407441 28.641 206 134 4 260 456 502 703 9.34e-13 70.9
Msa1386270 MtrunA17_Chr8g0370141 29.457 258 169 8 34 282 8 261 4.56e-26 109
Msa1386270 MtrunA17_Chr5g0404191 30.000 220 141 4 33 249 53 262 1.42e-25 106
Msa1386270 MtrunA17_Chr5g0419321 32.432 185 117 4 52 231 54 235 2.29e-22 100
Msa1386270 MtrunA17_Chr5g0419321 26.442 208 136 4 260 456 528 729 1.05e-12 70.5
Msa1386270 MtrunA17_Chr7g0273261 31.068 206 134 3 273 478 56 253 4.98e-22 95.5
Msa1386270 MtrunA17_Chr5g0434231 30.380 158 84 1 80 237 15 146 1.38e-18 82.8
Msa1386270 MtrunA17_Chr7g0273271 29.545 176 117 2 41 216 38 206 2.86e-16 77.8
Msa1386270 MtrunA17_Chr8g0370151 27.670 206 136 3 260 456 141 342 1.49e-15 78.2
Msa1386270 MtrunA17_Chr1g0183921 24.760 521 308 18 11 458 2 511 1.86e-14 75.9
Msa1386270 MtrunA17_Chr5g0434251 36.697 109 62 2 353 459 33 136 1.80e-13 68.2
Msa1386270 MtrunA17_Chr5g0404181 35.238 105 61 2 361 462 31 131 2.56e-12 64.3
Msa1386270 MtrunA17_Chr2g0319001 23.961 409 255 16 80 457 134 517 4.63e-11 65.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1386270 AT3G18830.1 67.992 503 129 3 20 490 26 528 0.0 690
Msa1386270 AT2G16120.1 63.340 491 148 3 23 482 19 508 0.0 624
Msa1386270 AT2G16130.1 62.994 481 147 2 23 472 19 499 0.0 613
Msa1386270 AT4G36670.1 54.219 474 187 2 21 464 8 481 5.54e-180 514
Msa1386270 AT2G18480.1 55.208 480 182 4 13 462 7 483 2.16e-174 500
Msa1386270 AT2G20780.1 47.347 490 233 5 8 477 34 518 3.34e-154 449
Msa1386270 AT2G20780.2 46.980 447 213 4 59 485 26 468 2.40e-136 402
Msa1386270 AT2G43330.1 31.677 483 304 6 6 468 5 481 3.19e-66 222
Msa1386270 AT5G17010.1 30.924 498 277 13 13 460 20 500 2.17e-59 204
Msa1386270 AT5G17010.3 30.924 498 277 13 13 460 20 500 2.17e-59 204
Msa1386270 AT5G17010.4 30.924 498 277 13 13 460 20 500 2.17e-59 204
Msa1386270 AT5G59250.1 30.316 475 259 9 35 460 103 554 3.04e-59 204
Msa1386270 AT5G16150.2 33.264 481 279 12 5 459 75 539 1.51e-57 200
Msa1386270 AT5G16150.1 33.264 481 279 12 5 459 75 539 1.51e-57 200
Msa1386270 AT5G16150.3 33.264 481 279 12 5 459 75 539 1.51e-57 200
Msa1386270 AT1G50310.1 28.571 483 302 9 34 480 29 504 5.68e-57 197
Msa1386270 AT3G05150.2 30.185 487 300 10 7 471 8 476 2.07e-55 192
Msa1386270 AT3G19940.1 28.484 488 295 11 34 480 29 503 2.19e-55 193
Msa1386270 AT5G23270.1 28.719 484 281 11 34 470 28 494 1.50e-54 191
Msa1386270 AT1G11260.1 27.419 496 317 10 31 490 25 513 1.69e-54 191
Msa1386270 AT3G05150.1 29.832 476 296 9 7 460 8 467 6.04e-54 188
Msa1386270 AT3G05150.3 29.832 476 296 9 7 460 8 467 6.04e-54 188
Msa1386270 AT5G27360.1 27.848 474 308 9 8 462 10 468 1.74e-53 187
Msa1386270 AT5G27360.3 28.151 476 304 10 8 462 58 516 4.30e-53 187
Msa1386270 AT3G03090.1 29.821 503 286 14 2 460 21 500 1.21e-52 186
Msa1386270 AT1G54730.2 29.864 442 277 8 41 465 43 468 1.23e-52 185
Msa1386270 AT5G27350.1 28.838 482 301 12 1 461 3 463 1.95e-52 184
Msa1386270 AT1G75220.1 28.285 449 294 6 31 462 49 486 2.15e-52 184
Msa1386270 AT5G18840.1 28.390 472 307 8 7 460 18 476 3.51e-52 184
Msa1386270 AT5G26340.1 27.907 473 297 10 34 469 27 492 9.53e-52 184
Msa1386270 AT1G34580.1 28.690 481 296 11 34 473 28 502 6.15e-51 181
Msa1386270 AT3G05165.3 27.557 479 306 10 6 461 2 462 9.44e-51 180
Msa1386270 AT3G05165.2 27.557 479 306 10 6 461 2 462 9.44e-51 180
Msa1386270 AT3G05165.1 27.557 479 306 10 6 461 2 462 9.44e-51 180
Msa1386270 AT1G19450.1 28.062 449 295 6 31 462 50 487 1.01e-50 180
Msa1386270 AT1G34580.2 30.361 415 261 8 81 473 44 452 1.65e-49 176
Msa1386270 AT3G05960.1 27.183 504 317 10 20 480 11 507 5.42e-49 176
Msa1386270 AT3G05160.1 26.580 459 306 7 21 461 8 453 1.89e-48 173
Msa1386270 AT5G26250.1 27.525 505 318 11 14 481 10 503 2.40e-48 174
Msa1386270 AT3G19930.1 26.824 507 328 12 15 486 12 510 1.12e-47 172
Msa1386270 AT3G19930.2 26.824 507 328 12 15 486 12 510 1.12e-47 172
Msa1386270 AT4G21480.1 28.306 484 303 13 25 470 18 495 2.61e-47 171
Msa1386270 AT4G02050.2 27.291 502 319 10 21 482 18 513 1.99e-46 169
Msa1386270 AT4G02050.1 27.291 502 319 10 21 482 18 513 1.99e-46 169
Msa1386270 AT4G04750.1 26.588 425 275 9 58 462 64 471 1.91e-45 166
Msa1386270 AT4G04750.2 26.588 425 275 9 58 462 64 471 1.91e-45 166
Msa1386270 AT4G04750.3 26.588 425 275 9 58 462 108 515 2.21e-45 166
Msa1386270 AT1G50310.2 30.704 355 223 7 142 480 14 361 4.27e-45 162
Msa1386270 AT1G07340.1 27.129 505 325 10 9 478 2 498 4.28e-45 165
Msa1386270 AT1G54730.3 29.771 393 244 7 41 416 43 420 4.51e-45 164
Msa1386270 AT2G48020.2 26.338 467 313 8 8 460 10 459 5.50e-45 164
Msa1386270 AT2G48020.1 26.338 467 313 8 8 460 10 459 5.50e-45 164
Msa1386270 AT4G04760.1 27.594 453 282 11 35 462 36 467 7.60e-45 164
Msa1386270 AT3G05160.3 27.163 416 276 6 60 461 2 404 2.32e-44 161
Msa1386270 AT3G05160.2 27.163 416 276 6 60 461 2 404 2.32e-44 161
Msa1386270 AT4G04760.3 27.804 428 263 11 60 462 2 408 4.66e-44 160
Msa1386270 AT1G77210.2 27.329 483 313 12 29 477 26 504 7.23e-44 162
Msa1386270 AT1G77210.1 27.329 483 313 12 29 477 26 504 7.23e-44 162
Msa1386270 AT5G27360.2 29.155 367 231 7 110 461 11 363 9.73e-44 159
Msa1386270 AT5G27360.5 29.155 367 231 7 110 461 11 363 9.73e-44 159
Msa1386270 AT1G08930.1 26.195 481 309 9 8 460 27 489 4.96e-43 159
Msa1386270 AT1G08930.2 26.195 481 309 9 8 460 27 489 4.96e-43 159
Msa1386270 AT5G17010.2 28.333 480 265 13 7 460 11 437 5.60e-43 158
Msa1386270 AT1G30220.1 31.138 334 207 5 26 338 24 355 7.05e-43 160
Msa1386270 AT1G30220.1 31.356 118 75 1 369 480 463 580 7.73e-14 74.3
Msa1386270 AT1G54730.5 28.182 440 266 9 41 465 43 447 1.06e-42 157
Msa1386270 AT1G05030.1 29.348 460 275 12 30 461 79 516 1.27e-42 159
Msa1386270 AT3G05400.1 27.438 441 283 9 41 462 37 459 6.58e-42 155
Msa1386270 AT3G05155.1 25.986 431 294 7 41 459 38 455 2.16e-41 154
Msa1386270 AT1G08890.1 24.573 468 313 7 21 465 13 463 2.68e-41 154
Msa1386270 AT1G79820.2 29.913 458 279 10 28 462 52 490 7.39e-41 153
Msa1386270 AT1G79820.1 29.913 458 279 10 28 462 52 490 7.39e-41 153
Msa1386270 AT3G05165.4 27.570 428 269 10 6 410 2 411 1.18e-40 152
Msa1386270 AT3G05165.5 27.570 428 269 10 6 410 2 411 1.18e-40 152
Msa1386270 AT4G16480.2 30.055 366 227 6 1 342 1 361 1.57e-40 154
Msa1386270 AT4G16480.2 35.345 116 71 1 369 480 467 582 8.60e-16 80.5
Msa1386270 AT4G16480.3 30.055 366 227 6 1 342 1 361 1.57e-40 154
Msa1386270 AT4G16480.3 35.345 116 71 1 369 480 467 582 8.60e-16 80.5
Msa1386270 AT4G16480.1 30.055 366 227 6 1 342 1 361 1.57e-40 154
Msa1386270 AT4G16480.1 35.345 116 71 1 369 480 467 582 8.60e-16 80.5
Msa1386270 AT3G05165.6 27.570 428 269 10 6 410 2 411 2.88e-40 152
Msa1386270 AT1G08900.3 25.983 458 309 10 22 465 12 453 7.96e-40 150
Msa1386270 AT5G61520.1 24.899 494 326 10 25 477 19 508 1.12e-39 150
Msa1386270 AT2G35740.1 29.014 355 220 7 29 356 25 374 1.67e-39 151
Msa1386270 AT2G35740.1 33.628 113 72 1 369 478 466 578 4.98e-14 75.1
Msa1386270 AT1G67300.2 27.366 486 304 10 6 461 23 489 6.10e-39 148
Msa1386270 AT1G08900.1 25.918 463 311 10 22 465 12 461 6.67e-39 147
Msa1386270 AT1G08900.2 25.918 463 311 10 22 465 12 461 6.67e-39 147
Msa1386270 AT1G54730.9 29.041 365 227 7 41 388 43 392 1.00e-38 146
Msa1386270 AT1G54730.7 29.041 365 227 7 41 388 43 392 1.00e-38 146
Msa1386270 AT1G08900.5 26.540 422 283 9 58 465 11 419 1.03e-38 146
Msa1386270 AT3G05400.2 29.815 379 228 10 104 462 79 439 1.71e-38 146
Msa1386270 AT5G27360.4 26.829 410 267 8 8 398 10 405 3.43e-38 145
Msa1386270 AT5G61520.2 26.150 413 285 7 81 477 52 460 1.52e-37 144
Msa1386270 AT1G67300.1 26.598 485 308 10 6 461 23 488 1.80e-37 144
Msa1386270 AT1G67300.3 26.598 485 308 10 6 461 23 488 1.80e-37 144
Msa1386270 AT4G04760.2 26.049 453 286 12 35 462 36 464 4.11e-37 142
Msa1386270 AT3G20460.1 26.424 439 286 9 45 464 68 488 1.18e-36 141
Msa1386270 AT1G05030.2 28.182 440 266 11 50 461 47 464 1.88e-36 140
Msa1386270 AT1G67300.6 26.852 432 268 10 6 408 23 435 1.11e-35 138
Msa1386270 AT1G67300.7 26.852 432 268 10 6 408 23 435 1.11e-35 138
Msa1386270 AT1G79820.4 30.348 402 242 8 28 408 52 436 1.34e-35 138
Msa1386270 AT1G54730.4 27.877 391 233 8 41 416 43 399 2.41e-35 136
Msa1386270 AT1G67300.4 26.714 423 262 10 6 399 23 426 3.98e-35 136
Msa1386270 AT1G67300.5 26.714 423 262 10 6 399 23 426 3.98e-35 136
Msa1386270 AT3G51490.2 33.969 262 153 8 34 282 8 262 4.65e-35 139
Msa1386270 AT3G51490.2 26.562 256 164 6 217 462 479 720 4.97e-16 81.6
Msa1386270 AT3G51490.1 33.969 262 153 8 34 282 8 262 4.75e-35 139
Msa1386270 AT3G51490.1 25.000 252 165 6 217 462 479 712 8.27e-13 71.2
Msa1386270 AT1G77210.3 27.401 354 240 8 138 477 5 355 2.38e-33 130
Msa1386270 AT1G20840.2 36.364 209 123 4 28 231 2 205 1.58e-32 132
Msa1386270 AT1G20840.2 30.973 226 141 5 260 474 512 733 9.44e-15 77.4
Msa1386270 AT1G20840.1 36.364 209 123 4 28 231 2 205 1.58e-32 132
Msa1386270 AT1G20840.1 30.973 226 141 5 260 474 512 733 9.44e-15 77.4
Msa1386270 AT1G79820.3 28.409 440 261 11 28 462 52 442 9.31e-32 127
Msa1386270 AT1G54730.11 28.713 303 189 5 41 328 43 333 1.46e-31 124
Msa1386270 AT1G08920.1 25.393 445 285 10 41 461 43 464 9.48e-31 124
Msa1386270 AT4G35300.4 34.404 218 132 6 41 252 15 227 2.09e-30 125
Msa1386270 AT4G35300.4 29.075 227 140 4 260 473 519 737 4.77e-18 87.8
Msa1386270 AT4G35300.8 34.404 218 132 6 41 252 15 227 2.09e-30 125
Msa1386270 AT4G35300.8 29.075 227 140 4 260 473 519 737 4.77e-18 87.8
Msa1386270 AT4G35300.6 34.404 218 132 6 41 252 15 227 2.09e-30 125
Msa1386270 AT4G35300.6 29.075 227 140 4 260 473 519 737 4.77e-18 87.8
Msa1386270 AT4G35300.11 34.404 218 132 6 41 252 15 227 2.09e-30 125
Msa1386270 AT4G35300.11 29.075 227 140 4 260 473 519 737 4.77e-18 87.8
Msa1386270 AT4G35300.1 34.404 218 132 6 41 252 15 227 2.09e-30 125
Msa1386270 AT4G35300.1 29.075 227 140 4 260 473 519 737 4.77e-18 87.8
Msa1386270 AT4G35300.10 34.404 218 132 6 41 252 15 227 2.09e-30 125
Msa1386270 AT4G35300.10 29.075 227 140 4 260 473 519 737 4.77e-18 87.8
Msa1386270 AT4G35300.7 34.404 218 132 6 41 252 15 227 2.09e-30 125
Msa1386270 AT4G35300.7 29.075 227 140 4 260 473 519 737 4.77e-18 87.8
Msa1386270 AT4G35300.9 34.404 218 132 6 41 252 15 227 2.29e-30 125
Msa1386270 AT4G35300.9 29.075 227 140 4 260 473 509 727 5.16e-18 87.8
Msa1386270 AT4G35300.2 34.404 218 132 6 41 252 15 227 2.29e-30 125
Msa1386270 AT4G35300.2 29.075 227 140 4 260 473 509 727 5.16e-18 87.8
Msa1386270 AT4G35300.3 34.404 218 132 6 41 252 15 227 2.29e-30 125
Msa1386270 AT4G35300.3 29.075 227 140 4 260 473 509 727 5.16e-18 87.8
Msa1386270 AT1G54730.8 26.997 363 216 8 41 388 43 371 3.41e-29 119
Msa1386270 AT1G08900.4 25.604 414 277 9 22 416 12 413 3.55e-29 119
Msa1386270 AT3G51490.3 34.419 215 125 6 80 282 2 212 1.07e-28 120
Msa1386270 AT3G51490.3 26.562 256 164 6 217 462 429 670 4.10e-16 81.6
Msa1386270 AT1G08920.2 25.000 452 285 11 41 461 43 471 3.08e-28 117
Msa1386270 AT2G48020.4 25.656 343 230 5 23 351 21 352 1.22e-27 114
Msa1386270 AT1G54730.10 27.622 286 183 5 41 310 43 320 6.88e-27 111
Msa1386270 AT1G54730.6 27.622 286 183 5 41 310 43 320 6.88e-27 111
Msa1386270 AT3G05155.2 26.333 300 197 6 41 328 38 325 8.43e-25 105
Msa1386270 AT2G48020.3 24.845 322 217 5 23 330 21 331 3.74e-24 103
Msa1386270 AT1G79820.5 28.696 345 190 11 123 462 87 380 4.19e-23 101
Msa1386270 AT1G08920.3 25.132 378 237 9 41 394 43 398 4.42e-22 99.4
Msa1386270 AT4G35300.5 29.075 227 140 4 260 473 322 540 3.50e-18 87.8

Find 118 sgRNAs with CRISPR-Local

Find 182 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCAACATCTATTCTCTTAT+TGG 0.104758 tig0020796:-27636 Msa1386270:CDS
ATTCAAACACAAAGCTAAAT+TGG 0.143556 tig0020796:-26234 Msa1386270:CDS
TCAAAACTATCACTTAAATT+AGG 0.212301 tig0020796:-26916 Msa1386270:CDS
TACCATGTGGGGAGACTTAT+TGG 0.273189 tig0020796:-28221 Msa1386270:five_prime_UTR
CTTATTGGTTCATGTCTTGC+CGG 0.297122 tig0020796:-27621 Msa1386270:CDS
GAAGAAATGGAAGCCTCTTT+TGG 0.298781 tig0020796:-25917 Msa1386270:CDS
TTTACCATATCCAAGCAAAA+TGG 0.306531 tig0020796:+27941 None:intergenic
CAAGTTGCACAATTTCAGTT+AGG 0.316198 tig0020796:-25842 Msa1386270:CDS
CTTGTGGTGTTGTGGTGAAT+AGG 0.316596 tig0020796:-26087 Msa1386270:CDS
TAAGGCTCCGGCAAAGAAAA+TGG 0.330343 tig0020796:+27548 None:intergenic
TTTGGAGGTATTGCTACAAT+TGG 0.332942 tig0020796:-25989 Msa1386270:CDS
CGTTACACCATCGTGTTTGC+CGG 0.353883 tig0020796:-27573 Msa1386270:CDS
GGGAAAATTGAGGTCCTCTT+AGG 0.357778 tig0020796:-27663 Msa1386270:CDS
TCTACGATGATGTAAGCTTT+TGG 0.366716 tig0020796:-28198 Msa1386270:five_prime_UTR
TTGTAGCAATACCTCCAAAT+AGG 0.368433 tig0020796:+25993 None:intergenic
AACTACAACTTCCTCATGTT+TGG 0.374495 tig0020796:-27507 Msa1386270:CDS
GAGAAAGCCACGAGAGGAAG+CGG 0.386076 tig0020796:+27413 None:intergenic
ACATCGTCGTTGCAATCTTC+AGG 0.387621 tig0020796:+26612 None:intergenic
TATGTAGCAACTTTCTCAAT+TGG 0.390137 tig0020796:-26178 Msa1386270:CDS
AGGTAAAACACTTGAAGAAA+TGG 0.392070 tig0020796:-25930 Msa1386270:CDS
AACTTGCAAGTGGGTTATAT+AGG 0.417404 tig0020796:+28175 None:intergenic
GTTAGATCTTAGTACTTAAA+CGG 0.431933 tig0020796:-28155 Msa1386270:five_prime_UTR
GACCAATCCAGTCGGAGGTT+CGG 0.442241 tig0020796:+27598 None:intergenic
TTCAAACACAAAGCTAAATT+GGG 0.444039 tig0020796:-26233 Msa1386270:CDS
GAGACTTCAGCGGTATAGAC+CGG 0.444678 tig0020796:+27438 None:intergenic
AGAAAGCCACGAGAGGAAGC+GGG 0.446522 tig0020796:+27414 None:intergenic
AACTATCACTTAAATTAGGT+TGG 0.451312 tig0020796:-26912 Msa1386270:CDS
AACATGAGGAAGTTGTAGTT+TGG 0.455379 tig0020796:+27510 None:intergenic
TTGGAGGTATTGCTACAATT+GGG 0.464188 tig0020796:-25988 Msa1386270:CDS
TTGTGGTGTTGTGGTGAATA+GGG 0.468285 tig0020796:-26086 Msa1386270:CDS
CCTTTGAGGTTGAGGGCACA+AGG 0.470587 tig0020796:-26115 Msa1386270:CDS
AGACTTCAGCGGTATAGACC+GGG 0.470597 tig0020796:+27439 None:intergenic
AGCATAGCCGATGCCAACTC+CGG 0.471335 tig0020796:+27473 None:intergenic
TGCCAACTCCGGCGACAAAA+CGG 0.474251 tig0020796:+27484 None:intergenic
TGGTGAATAGGGTCACTAGT+GGG 0.475348 tig0020796:-26075 Msa1386270:CDS
CCTTAGCTGAGCCTCTTCCT+TGG 0.476032 tig0020796:+26750 None:intergenic
TTGCCGGCCGAACCTCCGAC+TGG 0.476671 tig0020796:-27605 Msa1386270:CDS
AAGTTGCACAATTTCAGTTA+GGG 0.479817 tig0020796:-25841 Msa1386270:CDS
ACGAGCCATCGTGGTGACTC+TGG 0.481166 tig0020796:+26826 None:intergenic
CTTTGCCGGAGCCTTACTCA+TGG 0.483078 tig0020796:-27541 Msa1386270:CDS
ACAAAGCTAAATTGGGCCAT+TGG 0.485743 tig0020796:-26226 Msa1386270:CDS
ACTCACTAGTGTTGGTGGTA+TGG 0.486491 tig0020796:-26302 Msa1386270:CDS
GAGAAAATCAAAGAATACTA+AGG 0.489393 tig0020796:-25885 Msa1386270:CDS
TCCAGCGGCTTGTTTAATCT+CGG 0.492502 tig0020796:+26638 None:intergenic
CTGTTACTCACTAGTGTTGG+TGG 0.493290 tig0020796:-26307 Msa1386270:CDS
GGCCGAACCTCCGACTGGAT+TGG 0.499701 tig0020796:-27600 Msa1386270:CDS
TCCAAGCAAAATGGAAGTCA+TGG 0.500166 tig0020796:+27950 None:intergenic
TCTAAAGGAATTACGATTGG+TGG 0.500778 tig0020796:-26025 Msa1386270:CDS
TTTGTCGCCGGAGTTGGCAT+CGG 0.500928 tig0020796:-27480 Msa1386270:CDS
CTCGTAATGAGAGGTCGTTT+AGG 0.500941 tig0020796:-26808 Msa1386270:CDS
TGGTGAGAAACCCATGAGTA+AGG 0.502832 tig0020796:+27530 None:intergenic
ACTAAGATCTAACTTGCAAG+TGG 0.507405 tig0020796:+28165 None:intergenic
TTTGCCGGAGCCTTACTCAT+GGG 0.509489 tig0020796:-27540 Msa1386270:CDS
CTTAACAAATCCAACGGCTA+TGG 0.515197 tig0020796:+26384 None:intergenic
CTTATTGCAACCATAGCCGT+TGG 0.515422 tig0020796:-26394 Msa1386270:CDS
GCAACTTTCTCAATTGGTGC+AGG 0.518421 tig0020796:-26172 Msa1386270:CDS
CAACAAAACTTCAGATTCCA+AGG 0.520556 tig0020796:-26767 Msa1386270:CDS
TATCTACTAAGTTGAGACAT+TGG 0.520634 tig0020796:+25817 None:intergenic
AATCCAGTCGGAGGTTCGGC+CGG 0.521669 tig0020796:+27602 None:intergenic
AACTTCAGATTCCAAGGAAG+AGG 0.522917 tig0020796:-26761 Msa1386270:CDS
ATAAGTCTCCCCACATGGTA+TGG 0.526090 tig0020796:+28224 None:intergenic
GAAAGCCACGAGAGGAAGCG+GGG 0.529030 tig0020796:+27415 None:intergenic
AAAGCCACGAGAGGAAGCGG+GGG 0.538579 tig0020796:+27416 None:intergenic
ACAGTGGACGACGACCATAT+CGG 0.540286 tig0020796:+26326 None:intergenic
AGATGTTGATGATTCCTAAG+AGG 0.540995 tig0020796:+27649 None:intergenic
CTATGCTCTCATGATTGCCC+CGG 0.541782 tig0020796:-27457 Msa1386270:CDS
ATAAACAGTGGAATATTAGT+CGG 0.544490 tig0020796:-26961 Msa1386270:CDS
TTAGGTTGGAGAATGATGCT+TGG 0.547667 tig0020796:-26898 Msa1386270:CDS
ACTACTATAAACCCATGTGA+TGG 0.549519 tig0020796:+26147 None:intergenic
GCCGAGATTAAACAAGCCGC+TGG 0.549761 tig0020796:-26639 Msa1386270:CDS
TCCGGCAAAGAAAATGGCGC+CGG 0.556292 tig0020796:+27554 None:intergenic
CCTTGTGCCCTCAACCTCAA+AGG 0.562045 tig0020796:+26115 None:intergenic
TTGTCTAAAGGAATTACGAT+TGG 0.569189 tig0020796:-26028 Msa1386270:CDS
AGGTGCAGCTTGTGGTGTTG+TGG 0.570667 tig0020796:-26095 Msa1386270:CDS
GAGGTATTGCTACAATTGGG+TGG 0.571968 tig0020796:-25985 Msa1386270:CDS
ACAAAGAGACCTTAAAGTAT+CGG 0.572213 tig0020796:-27688 Msa1386270:CDS
GTGGTGAATAGGGTCACTAG+TGG 0.574539 tig0020796:-26076 Msa1386270:CDS
CTACTATAAACCCATGTGAT+GGG 0.576148 tig0020796:+26148 None:intergenic
TGGCTAAGACTCCAACGGCT+AGG 0.579484 tig0020796:+26851 None:intergenic
GAAACCCATGAGTAAGGCTC+CGG 0.584696 tig0020796:+27536 None:intergenic
TTGGTGCAGGACCCATCACA+TGG 0.585356 tig0020796:-26159 Msa1386270:CDS
AGTATCGGACGGGAAAATTG+AGG 0.585433 tig0020796:-27673 Msa1386270:CDS
CCACGATGGCTCGTAATGAG+AGG 0.586462 tig0020796:-26817 Msa1386270:CDS
CGACAAAACGGCCAAACATG+AGG 0.587511 tig0020796:+27496 None:intergenic
CTTTCTCACTTCTTTCCCAG+AGG 0.589254 tig0020796:-27397 Msa1386270:intron
GAGACCTTAAAGTATCGGAC+GGG 0.590431 tig0020796:-27683 Msa1386270:CDS
ACAGATATTGGTGTTATGAG+TGG 0.592393 tig0020796:-27726 Msa1386270:intron
CCTTCAGTAATCCTAGCCGT+TGG 0.594994 tig0020796:-26862 Msa1386270:CDS
AGGGCACAAGGTGCAGCTTG+TGG 0.595043 tig0020796:-26103 Msa1386270:CDS
CCATCGTGGTGACTCTGGCA+TGG 0.596487 tig0020796:+26831 None:intergenic
CCACTGTTACTCACTAGTGT+TGG 0.601446 tig0020796:-26310 Msa1386270:CDS
AGAGACCTTAAAGTATCGGA+CGG 0.606176 tig0020796:-27684 Msa1386270:CDS
CCAAGGAAGAGGCTCAGCTA+AGG 0.609894 tig0020796:-26750 Msa1386270:intron
TTGAATGATCGATGATCGTA+AGG 0.614986 tig0020796:+26251 None:intergenic
CAAAACTACAGCGTCTACAC+CGG 0.619548 tig0020796:+26468 None:intergenic
GACCAATAAGTCTCCCCACA+TGG 0.628174 tig0020796:+28219 None:intergenic
CAAGGTCTTAACAAATCCAA+CGG 0.634572 tig0020796:+26378 None:intergenic
AGTTGCTATACTCAATCCAA+TGG 0.639610 tig0020796:+26210 None:intergenic
TGGCATGGCTAAGACTCCAA+CGG 0.641928 tig0020796:+26846 None:intergenic
AATGGCGCCGGCAAACACGA+TGG 0.644723 tig0020796:+27566 None:intergenic
CCAACGGCTAGGATTACTGA+AGG 0.646658 tig0020796:+26862 None:intergenic
CCTCTCATTACGAGCCATCG+TGG 0.646747 tig0020796:+26817 None:intergenic
TGGAGAATGATGCTTGGAGT+AGG 0.648761 tig0020796:-26892 Msa1386270:CDS
GGTGAATAGGGTCACTAGTG+GGG 0.657688 tig0020796:-26074 Msa1386270:CDS
AGAAGTGAGAAAGCCACGAG+AGG 0.660349 tig0020796:+27407 None:intergenic
AATCGTAATTCCTTTAGACA+AGG 0.664820 tig0020796:+26030 None:intergenic
TGGTGCAGGACCCATCACAT+GGG 0.673212 tig0020796:-26158 Msa1386270:CDS
GCAATCTTCAGGTATTCCAG+CGG 0.674448 tig0020796:+26623 None:intergenic
CTAAGATCTAACTTGCAAGT+GGG 0.676200 tig0020796:+28166 None:intergenic
AGTAGCCACTAAAATAAACA+AGG 0.678884 tig0020796:+26360 None:intergenic
TATTGTGTCAAGATGAGTGA+GGG 0.685265 tig0020796:-28074 Msa1386270:exon
CCAACACTAGTGAGTAACAG+TGG 0.692907 tig0020796:+26310 None:intergenic
GACTTCAGCGGTATAGACCG+GGG 0.704184 tig0020796:+27440 None:intergenic
ACGACGACCAATCCAGTCGG+AGG 0.711720 tig0020796:+27593 None:intergenic
ATTATGCTTCCTGAAACACA+AGG 0.721140 tig0020796:-25950 Msa1386270:CDS
GTAACGACGACCAATCCAGT+CGG 0.738715 tig0020796:+27590 None:intergenic
CCATGCCAGAGTCACCACGA+TGG 0.743650 tig0020796:-26831 Msa1386270:CDS
ATATTGTGTCAAGATGAGTG+AGG 0.744896 tig0020796:-28075 Msa1386270:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAAATATATAAATATGAGA+TGG + tig0020796:26190-26209 None:intergenic 10.0%
!! GAAAAAAATAGATAAATTAA+AGG + tig0020796:26730-26749 None:intergenic 10.0%
!! TGATAAATAGAGATAAAAAA+AGG - tig0020796:26850-26869 Msa1386270:CDS 15.0%
!! ATAAATAACTCTTATAAAAC+TGG - tig0020796:26888-26907 Msa1386270:CDS 15.0%
!!! AATGCATAATTTCTTTTAAA+AGG + tig0020796:26980-26999 None:intergenic 15.0%
!!! TATTTTTTTGTCGATAAAAT+AGG - tig0020796:27427-27446 Msa1386270:CDS 15.0%
!! ATAACAAGAGGATAAAATAT+TGG + tig0020796:26309-26328 None:intergenic 20.0%
!!! TTTTCATTCATAATAACAAG+AGG + tig0020796:26321-26340 None:intergenic 20.0%
!! GATAGAATAGTAAATTTCAA+TGG - tig0020796:26922-26941 Msa1386270:CDS 20.0%
!! TTCATAATACACGATAATAT+AGG - tig0020796:27063-27082 Msa1386270:intron 20.0%
!! TCAAAACTATCACTTAAATT+AGG - tig0020796:27176-27195 Msa1386270:intron 20.0%
!! TCAAATTGATCATTTATTCT+CGG + tig0020796:27372-27391 None:intergenic 20.0%
! GTTAGATCTTAGTACTTAAA+CGG - tig0020796:25937-25956 Msa1386270:CDS 25.0%
!!! AAAGCATACTTGTTTCTTTT+AGG + tig0020796:26102-26121 None:intergenic 25.0%
! ATCAACATCTATTCTCTTAT+TGG - tig0020796:26456-26475 Msa1386270:CDS 25.0%
!! TTTTCAAAGCTCGTTTATTA+TGG - tig0020796:26745-26764 Msa1386270:intron 25.0%
!!! GGAGATTTTTTAGAAGTTAA+TGG - tig0020796:26789-26808 Msa1386270:CDS 25.0%
! GAGATAAAAAAAGGTAAAAG+TGG - tig0020796:26859-26878 Msa1386270:CDS 25.0%
! TAAATTTCAATGGATGTTAG+TGG - tig0020796:26932-26951 Msa1386270:CDS 25.0%
!! TGTTAGTGGAAAATTTGTTT+AGG - tig0020796:26946-26965 Msa1386270:CDS 25.0%
!! GTTAGTGGAAAATTTGTTTA+GGG - tig0020796:26947-26966 Msa1386270:CDS 25.0%
! GATTCTATATGCAATATATG+TGG + tig0020796:27017-27036 None:intergenic 25.0%
!!! TTAATTGATTTGATATCTGC+AGG - tig0020796:27103-27122 Msa1386270:intron 25.0%
! ATAAACAGTGGAATATTAGT+CGG - tig0020796:27131-27150 Msa1386270:intron 25.0%
! AACTATCACTTAAATTAGGT+TGG - tig0020796:27180-27199 Msa1386270:intron 25.0%
! CAAGTAAAAGTTAAAAACAC+TGG - tig0020796:27507-27526 Msa1386270:CDS 25.0%
!!! TAAGACCTTGTTTATTTTAG+TGG - tig0020796:27727-27746 Msa1386270:intron 25.0%
! ATTCAAACACAAAGCTAAAT+TGG - tig0020796:27858-27877 Msa1386270:intron 25.0%
! TTCAAACACAAAGCTAAATT+GGG - tig0020796:27859-27878 Msa1386270:intron 25.0%
! GAGAAAATCAAAGAATACTA+AGG - tig0020796:28207-28226 Msa1386270:five_prime_UTR 25.0%
! TTCTATTTTACCATACCATG+TGG - tig0020796:25858-25877 Msa1386270:CDS 30.0%
! TCTATTTTACCATACCATGT+GGG - tig0020796:25859-25878 Msa1386270:CDS 30.0%
! TTTCTTTTAGGCTTCTTTTG+TGG + tig0020796:26090-26109 None:intergenic 30.0%
TTTACCATATCCAAGCAAAA+TGG + tig0020796:26154-26173 None:intergenic 30.0%
!! GTTTCGCTTTGAAGAAAATT+TGG + tig0020796:26229-26248 None:intergenic 30.0%
ACAAAGAGACCTTAAAGTAT+CGG - tig0020796:26404-26423 Msa1386270:CDS 30.0%
AAAGTTAAAAACACTGGTGA+AGG - tig0020796:27513-27532 Msa1386270:CDS 30.0%
TATTACAATATGACGAACTG+CGG + tig0020796:27571-27590 None:intergenic 30.0%
ATATTGTAATAGCTGCACTA+GGG - tig0020796:27580-27599 Msa1386270:CDS 30.0%
!!! TCATTTTTTCAACAAGCTTC+CGG - tig0020796:27605-27624 Msa1386270:CDS 30.0%
CTACAATCTTCAAAAAAGCT+GGG - tig0020796:27654-27673 Msa1386270:CDS 30.0%
AGTAGCCACTAAAATAAACA+AGG + tig0020796:27735-27754 None:intergenic 30.0%
! ACTTTTATGTTAGACCGATA+TGG - tig0020796:27752-27771 Msa1386270:intron 30.0%
TATGTAGCAACTTTCTCAAT+TGG - tig0020796:27914-27933 Msa1386270:intron 30.0%
! GTAGTGAAATTTTTCCTTTG+AGG - tig0020796:27963-27982 Msa1386270:CDS 30.0%
!!! AAATTTTTCCTTTGAGGTTG+AGG - tig0020796:27969-27988 Msa1386270:CDS 30.0%
!!! AATTTTTCCTTTGAGGTTGA+GGG - tig0020796:27970-27989 Msa1386270:CDS 30.0%
AATCGTAATTCCTTTAGACA+AGG + tig0020796:28065-28084 None:intergenic 30.0%
TTGTCTAAAGGAATTACGAT+TGG - tig0020796:28064-28083 Msa1386270:CDS 30.0%
AGGTAAAACACTTGAAGAAA+TGG - tig0020796:28162-28181 Msa1386270:five_prime_UTR 30.0%
! AAGCCTCTTTTGGTAAAATT+TGG - tig0020796:28185-28204 Msa1386270:five_prime_UTR 30.0%
! TCTCCAAATTTTACCAAAAG+AGG + tig0020796:28191-28210 None:intergenic 30.0%
AAGTTGCACAATTTCAGTTA+GGG - tig0020796:28251-28270 Msa1386270:five_prime_UTR 30.0%
! CTATTTTACCATACCATGTG+GGG - tig0020796:25860-25879 Msa1386270:CDS 35.0%
! TCTACGATGATGTAAGCTTT+TGG - tig0020796:25894-25913 Msa1386270:CDS 35.0%
!! AACTTGCAAGTGGGTTATAT+AGG + tig0020796:25920-25939 None:intergenic 35.0%
! CTAAGATCTAACTTGCAAGT+GGG + tig0020796:25929-25948 None:intergenic 35.0%
! ACTAAGATCTAACTTGCAAG+TGG + tig0020796:25930-25949 None:intergenic 35.0%
ATATTGTGTCAAGATGAGTG+AGG - tig0020796:26017-26036 Msa1386270:CDS 35.0%
TATTGTGTCAAGATGAGTGA+GGG - tig0020796:26018-26037 Msa1386270:CDS 35.0%
! TGCTTTTGCTTGTGCTATAT+TGG - tig0020796:26116-26135 Msa1386270:CDS 35.0%
! ACTTCCATTTTGCTTGGATA+TGG - tig0020796:26147-26166 Msa1386270:CDS 35.0%
TCTTCAAAGCGAAACAAGTA+TGG - tig0020796:26234-26253 Msa1386270:CDS 35.0%
ACACGTCATCATACAGATAT+TGG - tig0020796:26354-26373 Msa1386270:CDS 35.0%
!! ACAGATATTGGTGTTATGAG+TGG - tig0020796:26366-26385 Msa1386270:CDS 35.0%
!! AGATGTTGATGATTCCTAAG+AGG + tig0020796:26446-26465 None:intergenic 35.0%
AACATGAGGAAGTTGTAGTT+TGG + tig0020796:26585-26604 None:intergenic 35.0%
AACTACAACTTCCTCATGTT+TGG - tig0020796:26585-26604 Msa1386270:CDS 35.0%
CAACAAAACTTCAGATTCCA+AGG - tig0020796:27325-27344 Msa1386270:intron 35.0%
ATTACAATATGACGAACTGC+GGG + tig0020796:27570-27589 None:intergenic 35.0%
CATATTGTAATAGCTGCACT+AGG - tig0020796:27579-27598 Msa1386270:CDS 35.0%
!!! CCAGCTTTTTTGAAGATTGT+AGG + tig0020796:27656-27675 None:intergenic 35.0%
CCTACAATCTTCAAAAAAGC+TGG - tig0020796:27653-27672 Msa1386270:CDS 35.0%
TTCAAAAAAGCTGGGATCAA+CGG - tig0020796:27662-27681 Msa1386270:CDS 35.0%
CAAGGTCTTAACAAATCCAA+CGG + tig0020796:27717-27736 None:intergenic 35.0%
TTGAATGATCGATGATCGTA+AGG + tig0020796:27844-27863 None:intergenic 35.0%
AGTTGCTATACTCAATCCAA+TGG + tig0020796:27885-27904 None:intergenic 35.0%
CTACTATAAACCCATGTGAT+GGG + tig0020796:27947-27966 None:intergenic 35.0%
ACTACTATAAACCCATGTGA+TGG + tig0020796:27948-27967 None:intergenic 35.0%
! ACTTTTCTGTCCTTGTCTAA+AGG - tig0020796:28052-28071 Msa1386270:CDS 35.0%
TCTAAAGGAATTACGATTGG+TGG - tig0020796:28067-28086 Msa1386270:exon 35.0%
TTGTAGCAATACCTCCAAAT+AGG + tig0020796:28102-28121 None:intergenic 35.0%
!! TTTGGAGGTATTGCTACAAT+TGG - tig0020796:28103-28122 Msa1386270:five_prime_UTR 35.0%
!! TTGGAGGTATTGCTACAATT+GGG - tig0020796:28104-28123 Msa1386270:five_prime_UTR 35.0%
ATTATGCTTCCTGAAACACA+AGG - tig0020796:28142-28161 Msa1386270:five_prime_UTR 35.0%
! AGTGTTTTACCTTGTGTTTC+AGG + tig0020796:28154-28173 None:intergenic 35.0%
CAAGTTGCACAATTTCAGTT+AGG - tig0020796:28250-28269 Msa1386270:five_prime_UTR 35.0%
! TCCATGACTTCCATTTTGCT+TGG - tig0020796:26141-26160 Msa1386270:CDS 40.0%
TCCAAGCAAAATGGAAGTCA+TGG + tig0020796:26145-26164 None:intergenic 40.0%
!! AGAGACCTTAAAGTATCGGA+CGG - tig0020796:26408-26427 Msa1386270:CDS 40.0%
! TTTTCCCGTCCGATACTTTA+AGG + tig0020796:26416-26435 None:intergenic 40.0%
!! CTTATTGGTTCATGTCTTGC+CGG - tig0020796:26471-26490 Msa1386270:CDS 40.0%
TAAAGGTGAGACTAACCTCT+GGG + tig0020796:26713-26732 None:intergenic 40.0%
TTAAAGGTGAGACTAACCTC+TGG + tig0020796:26714-26733 None:intergenic 40.0%
! CTGCAGGTTTTCATAAACAG+TGG - tig0020796:27119-27138 Msa1386270:intron 40.0%
!! TTAGGTTGGAGAATGATGCT+TGG - tig0020796:27194-27213 Msa1386270:intron 40.0%
AACTTCAGATTCCAAGGAAG+AGG - tig0020796:27331-27350 Msa1386270:intron 40.0%
! AAAACACTGGTGAAGGTGTA+TGG - tig0020796:27520-27539 Msa1386270:CDS 40.0%
CTTAACAAATCCAACGGCTA+TGG + tig0020796:27711-27730 None:intergenic 40.0%
ACAAAGCTAAATTGGGCCAT+TGG - tig0020796:27866-27885 Msa1386270:intron 40.0%
!! TTGTGGTGTTGTGGTGAATA+GGG - tig0020796:28006-28025 Msa1386270:CDS 40.0%
! GGTGGTGCATTTTTCCTATT+TGG - tig0020796:28085-28104 Msa1386270:five_prime_UTR 40.0%
! GGTGCATTTTTCCTATTTGG+AGG - tig0020796:28088-28107 Msa1386270:five_prime_UTR 40.0%
! GAAGAAATGGAAGCCTCTTT+TGG - tig0020796:28175-28194 Msa1386270:five_prime_UTR 40.0%
ATAAGTCTCCCCACATGGTA+TGG + tig0020796:25871-25890 None:intergenic 45.0%
TACCATGTGGGGAGACTTAT+TGG - tig0020796:25871-25890 Msa1386270:CDS 45.0%
!! GAGACCTTAAAGTATCGGAC+GGG - tig0020796:26409-26428 Msa1386270:CDS 45.0%
! AGTATCGGACGGGAAAATTG+AGG - tig0020796:26419-26438 Msa1386270:CDS 45.0%
GGGAAAATTGAGGTCCTCTT+AGG - tig0020796:26429-26448 Msa1386270:CDS 45.0%
TAAGGCTCCGGCAAAGAAAA+TGG + tig0020796:26547-26566 None:intergenic 45.0%
TGGTGAGAAACCCATGAGTA+AGG + tig0020796:26565-26584 None:intergenic 45.0%
CTTTCTCACTTCTTTCCCAG+AGG - tig0020796:26695-26714 Msa1386270:intron 45.0%
TGGAGAATGATGCTTGGAGT+AGG - tig0020796:27200-27219 Msa1386270:intron 45.0%
CTCGTAATGAGAGGTCGTTT+AGG - tig0020796:27284-27303 Msa1386270:intron 45.0%
! TCCAGCGGCTTGTTTAATCT+CGG + tig0020796:27457-27476 None:intergenic 45.0%
GCAATCTTCAGGTATTCCAG+CGG + tig0020796:27472-27491 None:intergenic 45.0%
ACATCGTCGTTGCAATCTTC+AGG + tig0020796:27483-27502 None:intergenic 45.0%
CAAAACTACAGCGTCTACAC+CGG + tig0020796:27627-27646 None:intergenic 45.0%
CTTATTGCAACCATAGCCGT+TGG - tig0020796:27698-27717 Msa1386270:CDS 45.0%
CCAACACTAGTGAGTAACAG+TGG + tig0020796:27785-27804 None:intergenic 45.0%
CCACTGTTACTCACTAGTGT+TGG - tig0020796:27782-27801 Msa1386270:intron 45.0%
! CTGTTACTCACTAGTGTTGG+TGG - tig0020796:27785-27804 Msa1386270:intron 45.0%
!! ACTCACTAGTGTTGGTGGTA+TGG - tig0020796:27790-27809 Msa1386270:intron 45.0%
GCAACTTTCTCAATTGGTGC+AGG - tig0020796:27920-27939 Msa1386270:intron 45.0%
!! CTTGTGGTGTTGTGGTGAAT+AGG - tig0020796:28005-28024 Msa1386270:CDS 45.0%
TGGTGAATAGGGTCACTAGT+GGG - tig0020796:28017-28036 Msa1386270:CDS 45.0%
!! GAGGTATTGCTACAATTGGG+TGG - tig0020796:28107-28126 Msa1386270:five_prime_UTR 45.0%
!!! ATTATAAAAAAGTAAATTTT+AGG - tig0020796:26768-26787 Msa1386270:CDS 5.0%
GACCAATAAGTCTCCCCACA+TGG + tig0020796:25876-25895 None:intergenic 50.0%
TGTGTGTGTGTGTGTGAGAG+AGG - tig0020796:25988-26007 Msa1386270:CDS 50.0%
GTAACGACGACCAATCCAGT+CGG + tig0020796:26505-26524 None:intergenic 50.0%
CGTTACACCATCGTGTTTGC+CGG - tig0020796:26519-26538 Msa1386270:intron 50.0%
TTTGCCGGAGCCTTACTCAT+GGG - tig0020796:26552-26571 Msa1386270:intron 50.0%
GAAACCCATGAGTAAGGCTC+CGG + tig0020796:26559-26578 None:intergenic 50.0%
CGACAAAACGGCCAAACATG+AGG + tig0020796:26599-26618 None:intergenic 50.0%
!! ATGTTTGGCCGTTTTGTCGC+CGG - tig0020796:26600-26619 Msa1386270:CDS 50.0%
CTATGCTCTCATGATTGCCC+CGG - tig0020796:26635-26654 Msa1386270:CDS 50.0%
AGACTTCAGCGGTATAGACC+GGG + tig0020796:26656-26675 None:intergenic 50.0%
GAGACTTCAGCGGTATAGAC+CGG + tig0020796:26657-26676 None:intergenic 50.0%
AGAAGTGAGAAAGCCACGAG+AGG + tig0020796:26688-26707 None:intergenic 50.0%
CCAACGGCTAGGATTACTGA+AGG + tig0020796:27233-27252 None:intergenic 50.0%
CCTTCAGTAATCCTAGCCGT+TGG - tig0020796:27230-27249 Msa1386270:intron 50.0%
TGGCATGGCTAAGACTCCAA+CGG + tig0020796:27249-27268 None:intergenic 50.0%
ATATGACGAACTGCGGGTGT+AGG + tig0020796:27564-27583 None:intergenic 50.0%
ACAGTGGACGACGACCATAT+CGG + tig0020796:27769-27788 None:intergenic 50.0%
GTGGTGAATAGGGTCACTAG+TGG - tig0020796:28016-28035 Msa1386270:CDS 50.0%
GGTGAATAGGGTCACTAGTG+GGG - tig0020796:28018-28037 Msa1386270:CDS 50.0%
GACCAATCCAGTCGGAGGTT+CGG + tig0020796:26497-26516 None:intergenic 55.0%
TCCGGCAAAGAAAATGGCGC+CGG + tig0020796:26541-26560 None:intergenic 55.0%
CTTTGCCGGAGCCTTACTCA+TGG - tig0020796:26551-26570 Msa1386270:intron 55.0%
TGCCAACTCCGGCGACAAAA+CGG + tig0020796:26611-26630 None:intergenic 55.0%
TTTGTCGCCGGAGTTGGCAT+CGG - tig0020796:26612-26631 Msa1386270:CDS 55.0%
AGCATAGCCGATGCCAACTC+CGG + tig0020796:26622-26641 None:intergenic 55.0%
GACTTCAGCGGTATAGACCG+GGG + tig0020796:26655-26674 None:intergenic 55.0%
AGAAAGCCACGAGAGGAAGC+GGG + tig0020796:26681-26700 None:intergenic 55.0%
GAGAAAGCCACGAGAGGAAG+CGG + tig0020796:26682-26701 None:intergenic 55.0%
TGGCTAAGACTCCAACGGCT+AGG + tig0020796:27244-27263 None:intergenic 55.0%
CCTCTCATTACGAGCCATCG+TGG + tig0020796:27278-27297 None:intergenic 55.0%
CCACGATGGCTCGTAATGAG+AGG - tig0020796:27275-27294 Msa1386270:intron 55.0%
CCTTAGCTGAGCCTCTTCCT+TGG + tig0020796:27345-27364 None:intergenic 55.0%
CCAAGGAAGAGGCTCAGCTA+AGG - tig0020796:27342-27361 Msa1386270:intron 55.0%
GCCGAGATTAAACAAGCCGC+TGG - tig0020796:27453-27472 Msa1386270:CDS 55.0%
TTGGTGCAGGACCCATCACA+TGG - tig0020796:27933-27952 Msa1386270:intron 55.0%
TGGTGCAGGACCCATCACAT+GGG - tig0020796:27934-27953 Msa1386270:intron 55.0%
CCTTGTGCCCTCAACCTCAA+AGG + tig0020796:27980-27999 None:intergenic 55.0%
!! CCTTTGAGGTTGAGGGCACA+AGG - tig0020796:27977-27996 Msa1386270:CDS 55.0%
! AGGTGCAGCTTGTGGTGTTG+TGG - tig0020796:27997-28016 Msa1386270:CDS 55.0%
AATCCAGTCGGAGGTTCGGC+CGG + tig0020796:26493-26512 None:intergenic 60.0%
ACGACGACCAATCCAGTCGG+AGG + tig0020796:26502-26521 None:intergenic 60.0%
!! AATGGCGCCGGCAAACACGA+TGG + tig0020796:26529-26548 None:intergenic 60.0%
!! GCCGGCGCCATTTTCTTTGC+CGG - tig0020796:26537-26556 Msa1386270:intron 60.0%
AAAGCCACGAGAGGAAGCGG+GGG + tig0020796:26679-26698 None:intergenic 60.0%
GAAAGCCACGAGAGGAAGCG+GGG + tig0020796:26680-26699 None:intergenic 60.0%
CCATCGTGGTGACTCTGGCA+TGG + tig0020796:27264-27283 None:intergenic 60.0%
CCATGCCAGAGTCACCACGA+TGG - tig0020796:27261-27280 Msa1386270:intron 60.0%
ACGAGCCATCGTGGTGACTC+TGG + tig0020796:27269-27288 None:intergenic 60.0%
AGGGCACAAGGTGCAGCTTG+TGG - tig0020796:27989-28008 Msa1386270:CDS 60.0%
GGCCGAACCTCCGACTGGAT+TGG - tig0020796:26492-26511 Msa1386270:intron 65.0%
!! GGCCGTTTTGTCGCCGGAGT+TGG - tig0020796:26606-26625 Msa1386270:CDS 65.0%
GGAAGCGGGGGAGACTTCAG+CGG + tig0020796:26667-26686 None:intergenic 65.0%
TTGCCGGCCGAACCTCCGAC+TGG - tig0020796:26487-26506 Msa1386270:intron 70.0%
GTCTCCCCCGCTTCCTCTCG+TGG - tig0020796:26672-26691 Msa1386270:intron 70.0%
Chromosome Type Strat End Strand Name
tig0020796 gene 25823 28291 25823 ID=Msa1386270;Name=Msa1386270
tig0020796 mRNA 25823 28291 25823 ID=Msa1386270-mRNA-1;Parent=Msa1386270;Name=Msa1386270-mRNA-1;_AED=0.12;_eAED=0.12;_QI=207|0.75|0.6|1|1|1|5|0|493
tig0020796 exon 25823 26493 25823 ID=Msa1386270-mRNA-1:exon:10093;Parent=Msa1386270-mRNA-1
tig0020796 exon 26580 26665 26580 ID=Msa1386270-mRNA-1:exon:10092;Parent=Msa1386270-mRNA-1
tig0020796 exon 26751 26989 26751 ID=Msa1386270-mRNA-1:exon:10091;Parent=Msa1386270-mRNA-1
tig0020796 exon 27398 27744 27398 ID=Msa1386270-mRNA-1:exon:10090;Parent=Msa1386270-mRNA-1
tig0020796 exon 27946 28291 27946 ID=Msa1386270-mRNA-1:exon:10089;Parent=Msa1386270-mRNA-1
tig0020796 five_prime_UTR 28085 28291 28085 ID=Msa1386270-mRNA-1:five_prime_utr;Parent=Msa1386270-mRNA-1
tig0020796 CDS 27946 28084 27946 ID=Msa1386270-mRNA-1:cds;Parent=Msa1386270-mRNA-1
tig0020796 CDS 27398 27744 27398 ID=Msa1386270-mRNA-1:cds;Parent=Msa1386270-mRNA-1
tig0020796 CDS 26751 26989 26751 ID=Msa1386270-mRNA-1:cds;Parent=Msa1386270-mRNA-1
tig0020796 CDS 26580 26665 26580 ID=Msa1386270-mRNA-1:cds;Parent=Msa1386270-mRNA-1
tig0020796 CDS 25823 26493 25823 ID=Msa1386270-mRNA-1:cds;Parent=Msa1386270-mRNA-1
Gene Sequence

>Msa1386270

ATGAGTGAGGGAAAGATAGTTGAAGCAAAAGCTCAAAAAAATCTTCAAGATTTTGATCCACAAAAGAAGCCTAAAAGAAACAAGTATGCTTTTGCTTGTGCTATATTGGCTTCCATGACTTCCATTTTGCTTGGATATGATATTGGTGTTATGAGTGGAGCAGCAATCTACATACAAAGAGACCTTAAAGTATCGGACGGGAAAATTGAGGTCCTCTTAGGAATCATCAACATCTATTCTCTTATTGGTTCATGTCTTGCCGGCCGAACCTCCGACTGGATTGGTCGTCGTTACACCATCGTGTTTGCCGGCGCCATTTTCTTTGCCGGAGCCTTACTCATGGGTTTCTCACCAAACTACAACTTCCTCATGTTTGGCCGTTTTGTCGCCGGAGTTGGCATCGGCTATGCTCTCATGATTGCCCCGGTCTATACCGCTGAAGTCTCCCCCGCTTCCTCTCGTGGCTTTCTCACTTCTTTCCCAGAGGTTTTCATAAACAGTGGAATATTAGTCGGATACATATCAAACTATGCATTTTCAAAACTATCACTTAAATTAGGTTGGAGAATGATGCTTGGAGTAGGTGCAATTCCTTCAGTAATCCTAGCCGTTGGAGTCTTAGCCATGCCAGAGTCACCACGATGGCTCGTAATGAGAGGTCGTTTAGGAGACGCAATAAAAGTACTCAACAAAACTTCAGATTCCAAGGAAGAGGCTCAGCTAAGGTTAGCCGAGATTAAACAAGCCGCTGGAATACCTGAAGATTGCAACGACGATGTTGTTCAAGTAAAAGTTAAAAACACTGGTGAAGCTTCCGGTGTAGACGCTGTAGTTTTGTATAGTCCTACAATCTTCAAAAAAGCTGGGATCAACGGTGATACACATCTTCTTATTGCAACCATAGCCGTTGGATTTGTTAAGACCTTGTTTATTTTAGTGGCTACTTTTATGTTAGACCGATATGGTCGTCGTCCACTGTTACTCACTAGTGTTGGTGGTATGGTAGTCTCGCTTCTCACACTCGCTGTCAGCCTTACGATCATCGATCATTCAAACACAAAGCTAAATTGGGCCATTGGATTGAGTATAGCAACTGTTTTGTCATATGTAGCAACTTTCTCAATTGGTGCAGGACCCATCACATGGGTTTATAGTAGTGAAATTTTTCCTTTGAGGTTGAGGGCACAAGGTGCAGCTTGTGGTGTTGTGGTGAATAGGGTCACTAGTGGGGTTATTTCAATGACTTTTCTGTCCTTGTCTAAAGGAATTACGATTGGTGGTGCATTTTTCCTATTTGGAGGTATTGCTACAATTGGGTGGATATTTTTTTATATTATGCTTCCTGAAACACAAGGTAAAACACTTGAAGAAATGGAAGCCTCTTTTGGTAAAATTTGGAGAAAATCAAAGAATACTAAGGAAGCTGAAAAAGACAATGCTCAAGTTGCACAATTTCAGTTAGGGACCAATGTCTCAACTTAG
Protein sequence

>Msa1386270

MSEGKIVEAKAQKNLQDFDPQKKPKRNKYAFACAILASMTSILLGYDIGVMSGAAIYIQRDLKVSDGKIEVLLGIINIYSLIGSCLAGRTSDWIGRRYTIVFAGAIFFAGALLMGFSPNYNFLMFGRFVAGVGIGYALMIAPVYTAEVSPASSRGFLTSFPEVFINSGILVGYISNYAFSKLSLKLGWRMMLGVGAIPSVILAVGVLAMPESPRWLVMRGRLGDAIKVLNKTSDSKEEAQLRLAEIKQAAGIPEDCNDDVVQVKVKNTGEASGVDAVVLYSPTIFKKAGINGDTHLLIATIAVGFVKTLFILVATFMLDRYGRRPLLLTSVGGMVVSLLTLAVSLTIIDHSNTKLNWAIGLSIATVLSYVATFSIGAGPITWVYSSEIFPLRLRAQGAACGVVVNRVTSGVISMTFLSLSKGITIGGAFFLFGGIATIGWIFFYIMLPETQGKTLEEMEASFGKIWRKSKNTKEAEKDNAQVAQFQLGTNVST*