AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1040170

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040170 MtrunA17_Chr7g0271391 99.373 638 4 0 1 638 1 638 0.0 1305
Msa1040170 MtrunA17_Chr7g0270601 75.776 161 38 1 12 171 6 166 4.57e-78 256
Msa1040170 MtrunA17_Chr7g0270601 50.000 172 86 0 461 632 292 463 6.53e-47 172
Msa1040170 MtrunA17_Chr3g0098211 48.718 156 76 3 19 173 176 328 2.17e-39 148
Msa1040170 MtrunA17_Chr3g0098211 44.667 150 79 2 17 164 10 157 2.75e-25 107
Msa1040170 MtrunA17_Chr3g0129561 46.980 149 79 0 17 165 55 203 3.23e-38 152
Msa1040170 MtrunA17_Chr1g0155901 43.452 168 85 4 11 169 2 168 6.15e-31 119
Msa1040170 MtrunA17_Chr4g0044701 34.286 245 129 6 19 245 48 278 6.02e-29 121
Msa1040170 MtrunA17_Chr8g0338201 37.037 162 82 5 18 165 33 188 9.13e-21 96.7
Msa1040170 MtrunA17_Chr8g0338651 35.443 158 82 4 22 165 35 186 1.18e-18 90.1
Msa1040170 MtrunA17_Chr4g0055131 35.404 161 85 4 19 165 40 195 4.73e-18 87.8
Msa1040170 MtrunA17_Chr7g0269191 46.000 100 53 1 534 632 9 108 6.80e-18 79.7
Msa1040170 MtrunA17_Chr7g0247681 38.136 118 66 3 54 165 2 118 4.39e-12 68.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1040170 AT5G61190.4 58.462 260 81 5 8 265 2 236 1.90e-87 288
Msa1040170 AT5G61190.2 58.462 260 81 5 8 265 2 236 1.90e-87 288
Msa1040170 AT3G62200.1 79.762 168 34 0 10 177 21 188 3.11e-87 286
Msa1040170 AT5G61190.8 58.462 260 81 5 8 265 2 236 1.15e-86 289
Msa1040170 AT5G61190.11 58.462 260 81 5 8 265 2 236 5.19e-86 289
Msa1040170 AT5G61190.1 69.307 202 60 2 8 207 2 203 5.81e-86 290
Msa1040170 AT5G61190.10 69.307 202 60 2 8 207 2 203 8.63e-86 289
Msa1040170 AT5G61190.6 58.462 260 81 5 8 265 2 236 1.65e-85 289
Msa1040170 AT5G61190.5 58.462 260 81 5 8 265 2 236 1.67e-85 289
Msa1040170 AT5G61190.9 69.307 202 60 2 8 207 2 203 1.82e-85 289
Msa1040170 AT3G62210.1 73.333 180 45 1 5 181 10 189 1.86e-85 269
Msa1040170 AT5G61180.1 60.674 178 52 1 9 168 72 249 1.25e-69 231
Msa1040170 AT3G61028.3 45.181 166 88 3 15 177 78 243 1.95e-43 157
Msa1040170 AT3G61028.1 45.181 166 88 3 15 177 78 243 1.95e-43 157
Msa1040170 AT3G60940.1 47.429 175 83 3 12 177 76 250 3.86e-43 156
Msa1040170 AT3G60940.2 47.429 175 83 3 12 177 76 250 3.86e-43 156
Msa1040170 AT5G64710.1 42.138 159 91 1 11 168 54 212 1.18e-37 150
Msa1040170 AT5G09840.1 41.935 155 90 0 11 165 65 219 2.86e-37 149
Msa1040170 AT5G61190.7 66.055 109 35 2 101 207 1 109 2.21e-35 143
Msa1040170 AT5G61190.3 66.055 109 35 2 101 207 1 109 2.21e-35 143
Msa1040170 AT2G15560.2 41.290 155 87 3 15 165 46 200 4.55e-27 115
Msa1040170 AT2G15560.1 41.290 155 87 3 15 165 46 200 4.96e-27 115
Msa1040170 AT3G62850.1 30.841 214 131 6 9 211 230 437 6.86e-22 99.8
Msa1040170 AT3G62850.1 31.210 157 102 2 10 163 7 160 3.57e-18 88.2
Msa1040170 AT3G61028.2 40.517 116 67 2 15 128 78 193 1.08e-21 95.5
Msa1040170 AT3G62050.1 36.434 129 73 3 14 139 9 131 4.28e-20 88.2
Msa1040170 AT5G35640.1 31.111 135 88 2 17 147 32 165 7.28e-15 73.9
Msa1040170 AT3G61090.1 29.480 173 106 5 18 180 12 178 2.13e-14 72.4
Msa1040170 AT5G64710.2 41.463 82 47 1 88 168 6 87 3.65e-14 76.3
Msa1040170 AT3G62460.1 29.927 137 88 3 18 149 58 191 6.53e-12 65.5
Msa1040170 AT1G01355.1 32.450 151 96 3 28 174 11 159 1.39e-11 65.1
Msa1040170 AT3G56730.6 33.019 106 65 1 15 120 7 106 2.53e-11 63.2
Msa1040170 AT3G61100.1 28.485 165 98 5 18 170 8 164 2.93e-11 62.8
Msa1040170 AT3G56730.2 30.357 112 72 1 9 120 9 114 3.83e-11 62.8
Msa1040170 AT3G56730.3 30.357 112 72 1 9 120 9 114 3.83e-11 62.8
Msa1040170 AT1G01355.3 31.788 151 93 3 28 174 11 155 4.30e-11 63.5
Msa1040170 AT3G56730.1 32.692 104 64 1 17 120 11 108 8.34e-11 61.6
Msa1040170 AT5G64450.1 35.000 120 64 6 52 162 34 148 9.09e-11 61.6

Find 278 sgRNAs with CRISPR-Local

Find 359 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCGAATTATTTATTGATTT+CGG 0.150955 7_1:+77524362 Msa1040170:CDS
GCGAATTATTTATTGATTTC+GGG 0.173410 7_1:+77524363 Msa1040170:CDS
GGAAAACCGTTTGGTCTTAA+TGG 0.186135 7_1:-77524987 None:intergenic
AACAGCACTCCAAAGAAATT+TGG 0.210078 7_1:+77525672 Msa1040170:CDS
TCCTTGTCGACATGCTGTTC+TGG 0.215607 7_1:+77524319 Msa1040170:CDS
CCAATATCTGGCACAGTTCT+AGG 0.226868 7_1:-77525119 None:intergenic
AATTCGTCGTCGGAGATAAA+TGG 0.230773 7_1:+77526255 Msa1040170:three_prime_UTR
GTTGCAAAAGTATGGGAATT+TGG 0.231833 7_1:-77525047 None:intergenic
GGGATTTGATTCTAGATATC+AGG 0.233096 7_1:+77524692 Msa1040170:CDS
AATTTCGTCCCAAATTTCTT+TGG 0.251306 7_1:-77525681 None:intergenic
ATACTTATATAGATAAAATT+AGG 0.259196 7_1:+77523001 Msa1040170:five_prime_UTR
TTTGCTTAGTTAACTATATA+TGG 0.262422 7_1:-77522856 None:intergenic
GGTCTTAATGGCTGGGAATA+TGG 0.268984 7_1:-77524975 None:intergenic
ATTTCTTTGGAGTGCTGTTT+AGG 0.279080 7_1:-77525668 None:intergenic
GAATATGTACAAGGCCTTAT+AGG 0.288105 7_1:+77525410 Msa1040170:CDS
CCATACCAAACTGTAGTATT+TGG 0.290881 7_1:-77526322 None:intergenic
TTATCCGGAAATACAGCTTT+TGG 0.291189 7_1:+77526950 Msa1040170:three_prime_UTR
TTTCAGGGTGTATTGTAAAA+TGG 0.292307 7_1:+77526632 Msa1040170:three_prime_UTR
AGCGTCAAATGAACAAATTC+TGG 0.298140 7_1:-77526659 None:intergenic
CTGGCTCTATATACTGAATT+TGG 0.300005 7_1:+77526977 Msa1040170:three_prime_UTR
AAGTTTCCATTACCATAATC+AGG 0.300984 7_1:-77526059 None:intergenic
ATACGACAGCAATTGGAAAA+AGG 0.302939 7_1:+77522744 Msa1040170:five_prime_UTR
CAAACTCTTAATTTGCTATC+TGG 0.304458 7_1:+77526778 Msa1040170:three_prime_UTR
ACATCCAAAAGCTGTATTTC+CGG 0.304877 7_1:-77526954 None:intergenic
TGTACATATTCAGAAGGTTT+AGG 0.309220 7_1:-77525398 None:intergenic
CCTAGAACTGTGCCAGATAT+TGG 0.310900 7_1:+77525119 Msa1040170:CDS
TGCTGGTAGATCGGCAATAA+TGG 0.316014 7_1:+77525724 Msa1040170:CDS
GCATAGCAGCACCCTGATTA+TGG 0.320572 7_1:+77526047 Msa1040170:exon
ACCTCCTCATTCGCAGTTGA+TGG 0.324550 7_1:-77524410 None:intergenic
CCGGTGTAGTTGCAAAAGTA+TGG 0.328541 7_1:-77525055 None:intergenic
AATGGTAAGTGGGGATCTTC+AGG 0.332723 7_1:+77525371 Msa1040170:CDS
CCCGAGTCAAACCCCGATTC+AGG 0.333358 7_1:+77526011 Msa1040170:CDS
CCAGCATGAATTTCAGAATA+GGG 0.333740 7_1:-77524642 None:intergenic
GCATGTGGATCGGAGCCTTT+AGG 0.345450 7_1:-77523183 None:intergenic
ATTTAAATTTACATTTGCTT+TGG 0.350575 7_1:+77527081 Msa1040170:three_prime_UTR
AATAATAAACTTCCCTCTAA+TGG 0.351040 7_1:+77525353 Msa1040170:CDS
AGATCAACGAATGAACAAAA+TGG 0.352005 7_1:+77525251 Msa1040170:CDS
ATATTTCCTTCAATCTATCT+TGG 0.354451 7_1:+77526555 Msa1040170:three_prime_UTR
ACAAGGTATGTTTATTATGA+TGG 0.355179 7_1:+77526809 Msa1040170:three_prime_UTR
ATGTTCAGATTGCCAATATC+TGG 0.357086 7_1:-77525131 None:intergenic
CACTTAAAATTGCACAAGAT+TGG 0.358644 7_1:+77526733 Msa1040170:three_prime_UTR
AACATCGGTGTTGCGATGCT+TGG 0.359132 7_1:-77525522 None:intergenic
CCTTATTAGACTGGACTACT+TGG 0.359523 7_1:+77526478 Msa1040170:three_prime_UTR
CGGTTATCTTGAAGTCCAAC+TGG 0.361639 7_1:-77524774 None:intergenic
GATAATTGTTTACATTATTA+CGG 0.362001 7_1:-77524794 None:intergenic
GATCCATTATGGAGCAATAA+TGG 0.362238 7_1:+77524885 Msa1040170:CDS
CCAAGTAGTCCAGTCTAATA+AGG 0.362296 7_1:-77526478 None:intergenic
GATCCACTTTGAGGAACATT+TGG 0.363780 7_1:-77524834 None:intergenic
TTACCATTATTGCTCCATAA+TGG 0.363932 7_1:-77524888 None:intergenic
TGTTCATTCGTTGATCTTAC+CGG 0.368690 7_1:-77525245 None:intergenic
AGAATCATTCGAATAATTAC+TGG 0.374269 7_1:-77526139 None:intergenic
AACCGTTTGGTCTTAATGGC+TGG 0.379988 7_1:-77524983 None:intergenic
AGGAAATCATCAAAATCAAC+AGG 0.380452 7_1:+77524917 Msa1040170:CDS
ATTGGCAATCTGAACATATC+TGG 0.381321 7_1:+77525137 Msa1040170:CDS
CGAGCAAAATGTATATTTGT+AGG 0.381945 7_1:-77526445 None:intergenic
TGCTGCTCAGACACAGCAAC+AGG 0.385298 7_1:+77524614 Msa1040170:CDS
AGGAAATATCTCGACACATT+TGG 0.387421 7_1:-77526541 None:intergenic
AGATCCCCACTTACCATTAG+AGG 0.389364 7_1:-77525366 None:intergenic
AACATGATTAAGTGAAATTC+CGG 0.391711 7_1:-77523325 None:intergenic
GGGAAATCATCAAAATCAAC+AGG 0.391798 7_1:+77524938 Msa1040170:CDS
TTCATGGCTTTCGGTCCATT+TGG 0.392243 7_1:-77524744 None:intergenic
GGAAGTGGAGCACTACTCTT+AGG 0.394120 7_1:-77525224 None:intergenic
TCTCGTATGAATCAAACTAT+AGG 0.394834 7_1:+77526168 Msa1040170:three_prime_UTR
AATAAATAATTCGCAGGTGC+AGG 0.398280 7_1:-77524354 None:intergenic
CCATTGCATACGACAGCAAT+TGG 0.398911 7_1:+77522737 Msa1040170:five_prime_UTR
TTCGTTGATCTTACCGGAAG+TGG 0.402973 7_1:-77525239 None:intergenic
TTCGGTCCATTTGGTTGACT+CGG 0.404852 7_1:-77524735 None:intergenic
CAGCTAAGAGTGTATGGCTT+TGG 0.407793 7_1:+77524484 Msa1040170:CDS
AGCAAATGTAAATTTAAATA+CGG 0.409351 7_1:-77527077 None:intergenic
TAAGAGTAGTGCTCCACTTC+CGG 0.410866 7_1:+77525226 Msa1040170:CDS
TCTTGCGTATTGCATGGGTT+TGG 0.412229 7_1:-77522702 None:intergenic
CAAGTAAAACAACACCTATA+AGG 0.412949 7_1:-77525424 None:intergenic
TTCGAAGTTTCAAATGTTGC+AGG 0.413026 7_1:+77526687 Msa1040170:three_prime_UTR
TCAGAAGTCACCCCTGAATC+GGG 0.413185 7_1:-77526023 None:intergenic
ACTCCGTTGCGGAACAGTGC+GGG 0.413493 7_1:-77525183 None:intergenic
TATGATGTTGAATAATTATC+CGG 0.413966 7_1:+77526935 Msa1040170:three_prime_UTR
GAGTGTGTAGGTTGATATTC+TGG 0.418613 7_1:-77525317 None:intergenic
TATCTCCGACGACGAATTGA+AGG 0.419671 7_1:-77526250 None:intergenic
CCTTGTCGACATGCTGTTCT+GGG 0.419680 7_1:+77524320 Msa1040170:CDS
GATCCACTGTGATGTATAAC+GGG 0.419901 7_1:-77526366 None:intergenic
ACAGCACTCCAAAGAAATTT+GGG 0.420086 7_1:+77525673 Msa1040170:CDS
CAGCTACCACTGACATTAAG+AGG 0.421531 7_1:-77527044 None:intergenic
CTTCTCAGTTGGCATCATCT+TGG 0.424167 7_1:-77525468 None:intergenic
ACATCACAGTGGATCTATCT+TGG 0.424998 7_1:+77526374 Msa1040170:three_prime_UTR
GCGCCAATTCTGATCCATTA+TGG 0.426102 7_1:+77524874 Msa1040170:CDS
CGAATAATTACTGGTCCAAC+TGG 0.427304 7_1:-77526130 None:intergenic
TGAAGAGACTACACAAGATT+CGG 0.427403 7_1:-77522824 None:intergenic
GCTCCATAATGGATCAGAAT+TGG 0.428216 7_1:-77524877 None:intergenic
CAGCACCCTGATTATGGTAA+TGG 0.428511 7_1:+77526053 Msa1040170:three_prime_UTR
CAACAAATACAAGTGAAAAC+TGG 0.432305 7_1:-77527236 None:intergenic
CCAATTGCTGTCGTATGCAA+TGG 0.432591 7_1:-77522737 None:intergenic
TAGTAAAGGTGAAGAGATTG+AGG 0.432786 7_1:-77522891 None:intergenic
ATATCTGGTTATCCCAATAA+TGG 0.432994 7_1:+77525152 Msa1040170:CDS
TTGAGGTGGAGAGTAGTGTT+TGG 0.441638 7_1:-77522669 None:intergenic
GTATACGACGGCGAAGATAT+CGG 0.442192 7_1:+77523131 Msa1040170:CDS
TTGGTGATTTAGTCGCGAAT+TGG 0.443335 7_1:+77526996 Msa1040170:three_prime_UTR
CTAAATTCTTCATTGTATCA+TGG 0.446475 7_1:+77527273 Msa1040170:three_prime_UTR
ACATCGGTGTTGCGATGCTT+GGG 0.448328 7_1:-77525521 None:intergenic
GTCAGAAGTCACCCCTGAAT+CGG 0.449046 7_1:-77526024 None:intergenic
GAATGAACAAAATGGACATA+TGG 0.450541 7_1:+77525259 Msa1040170:CDS
CCCTGAATCGGGGTTTGACT+CGG 0.450927 7_1:-77526012 None:intergenic
TCAGCAACAAGAAATGCAAC+GGG 0.451131 7_1:-77526897 None:intergenic
AAATACCAAATACTACAGTT+TGG 0.452518 7_1:+77526317 Msa1040170:three_prime_UTR
TCCAGCATGAATTTCAGAAT+AGG 0.452577 7_1:-77524643 None:intergenic
TTTCTTCTTGCGTATTGCAT+GGG 0.457197 7_1:-77522707 None:intergenic
TATGAATTACTAGGTGCAAA+AGG 0.459744 7_1:-77525020 None:intergenic
TTTAGTCGCGAATTGGTCTC+TGG 0.459938 7_1:+77527003 Msa1040170:three_prime_UTR
ACCGTTTGGTCTTAATGGCT+GGG 0.462546 7_1:-77524982 None:intergenic
CTTTGGACTACTCTCTTAGC+TGG 0.463279 7_1:+77524501 Msa1040170:CDS
TGTGTATCACCACTGGTTAG+TGG 0.463529 7_1:-77524531 None:intergenic
GGAGTTCTTCCTTATTAGAC+TGG 0.465053 7_1:+77526469 Msa1040170:three_prime_UTR
TGGATAATTCATCAGCAGTC+TGG 0.469032 7_1:+77525963 Msa1040170:CDS
TGCTGTCGTATGCAATGGGT+CGG 0.469423 7_1:-77522732 None:intergenic
ATGGTGGTAAAACAAAATTT+AGG 0.469766 7_1:+77525578 Msa1040170:CDS
CCCTCCATCAACTGCGAATG+AGG 0.471098 7_1:+77524406 Msa1040170:CDS
GGAGCACTACTCTTAGGATT+CGG 0.471163 7_1:-77525218 None:intergenic
CAATTGCTGTCGTATGCAAT+GGG 0.472372 7_1:-77522736 None:intergenic
CGACATGCTGTTCTGGGCAG+TGG 0.473730 7_1:+77524326 Msa1040170:CDS
ATAACTGATAGCATCCGTTA+TGG 0.474762 7_1:+77525494 Msa1040170:CDS
ATTGGCGCGCTCAAAGTTTG+TGG 0.477749 7_1:-77524859 None:intergenic
TAGCGATCAATTTGTTTGAT+CGG 0.477979 7_1:+77527188 Msa1040170:three_prime_UTR
TTGCAGCAGCTAAGAGTGTA+TGG 0.479275 7_1:+77524478 Msa1040170:CDS
ACATTTGGATTATAGTTGCC+AGG 0.480104 7_1:-77524819 None:intergenic
GGTTGCAATGGAAAACCGTT+TGG 0.481798 7_1:-77524996 None:intergenic
GGTGTCACCGTAGGCGGAGA+TGG 0.483267 7_1:-77523262 None:intergenic
GTTGCATTTCTTGTTGCTGA+TGG 0.483586 7_1:+77526900 Msa1040170:three_prime_UTR
TAAGATCAGATGGGCGGAGG+TGG 0.484744 7_1:+77523084 Msa1040170:exon
TCAGTTATATTCTTCTCAGT+TGG 0.486950 7_1:-77525479 None:intergenic
AACTTCCCTCTAATGGTAAG+TGG 0.488285 7_1:+77525360 Msa1040170:CDS
TTAGTTTGAATCGATCTTTG+TGG 0.488974 7_1:+77523034 Msa1040170:five_prime_UTR
CCGTAGGCGGAGATGGAAAC+GGG 0.489402 7_1:-77523255 None:intergenic
TCTATCTTGGTGACCAACCT+TGG 0.490918 7_1:+77526568 Msa1040170:three_prime_UTR
CCCGTTTCCATCTCCGCCTA+CGG 0.493859 7_1:+77523255 Msa1040170:CDS
GAAAACTGTCATGTTCCTAA+AGG 0.494196 7_1:+77523168 Msa1040170:CDS
TGGAAGTGTGTAAATCCCTT+AGG 0.494619 7_1:+77525638 Msa1040170:CDS
CAAATGTTCAAAACGGAGGA+AGG 0.495613 7_1:+77524670 Msa1040170:CDS
CTGTTTAGGATTTCCACCTA+AGG 0.496032 7_1:-77525654 None:intergenic
TATCAAATATATCACTAAAA+CGG 0.496693 7_1:-77526503 None:intergenic
CCTACACACTCGACAGCAAT+GGG 0.496891 7_1:+77525329 Msa1040170:CDS
TTGGTAAGAATGACAAACTC+TGG 0.500710 7_1:+77525618 Msa1040170:CDS
AAATTGTTGCCAACAGTCCT+AGG 0.502255 7_1:-77525083 None:intergenic
CCGAGTCAAACCCCGATTCA+GGG 0.503212 7_1:+77526012 Msa1040170:CDS
CCCTATTCTGAAATTCATGC+TGG 0.505000 7_1:+77524642 Msa1040170:CDS
TTTGGAGAATATGAATTACT+AGG 0.506209 7_1:-77525029 None:intergenic
AACAACCCCTGCTGGTAGAT+CGG 0.506607 7_1:+77525715 Msa1040170:CDS
CTCCGTTGCGGAACAGTGCG+GGG 0.510872 7_1:-77525182 None:intergenic
TCGGTCCATTTGGTTGACTC+GGG 0.511015 7_1:-77524734 None:intergenic
ACCGTAGGCGGAGATGGAAA+CGG 0.511972 7_1:-77523256 None:intergenic
AATCCAAATGTTCCTCAAAG+TGG 0.513048 7_1:+77524831 Msa1040170:CDS
AGATCCACTGTGATGTATAA+CGG 0.515531 7_1:-77526367 None:intergenic
TATGGTAATGGAAACTTGAA+AGG 0.516440 7_1:+77526065 Msa1040170:three_prime_UTR
AATGTTCAAAACGGAGGAAG+GGG 0.517066 7_1:+77524672 Msa1040170:CDS
TAATTCATCAGCAGTCTGGC+TGG 0.517933 7_1:+77525967 Msa1040170:CDS
TAATTACTGGTCCAACTGGC+TGG 0.519557 7_1:-77526126 None:intergenic
CCAAATACTACAGTTTGGTA+TGG 0.522466 7_1:+77526322 Msa1040170:three_prime_UTR
CTATTGCCTCTTAATGTCAG+TGG 0.523753 7_1:+77527038 Msa1040170:three_prime_UTR
TGACTCGGGTTTCTCCAAGT+TGG 0.524058 7_1:-77524720 None:intergenic
TATTTCTGTAGGTATGAAGC+AGG 0.525565 7_1:+77525855 Msa1040170:intron
CCTGAATCGGGGTTTGACTC+GGG 0.525798 7_1:-77526011 None:intergenic
GTTGGCAACAATTTCAGTAC+AGG 0.526636 7_1:+77525092 Msa1040170:CDS
TCCCAGCCATTAAGACCAAA+CGG 0.527762 7_1:+77524981 Msa1040170:CDS
TTTGTGGTTGATCCACTTTG+AGG 0.528704 7_1:-77524843 None:intergenic
CAACTACACCGGTGCCACCT+AGG 0.529046 7_1:+77525066 Msa1040170:CDS
GATATCAGGGTAGACCAACT+TGG 0.529804 7_1:+77524706 Msa1040170:CDS
TTGGATTGAGAGACTTGAGG+TGG 0.530189 7_1:-77522683 None:intergenic
ATTATTGCCGATCTACCAGC+AGG 0.530418 7_1:-77525722 None:intergenic
CACCGATGTTAAGAAAGCTC+TGG 0.531404 7_1:+77525535 Msa1040170:CDS
ACTTCCCTCTAATGGTAAGT+GGG 0.534715 7_1:+77525361 Msa1040170:CDS
GGAAATTCAAATGTTCAAAA+CGG 0.536448 7_1:+77524663 Msa1040170:CDS
GATCTTTGTGGAATTAAGAT+CGG 0.538325 7_1:+77523046 Msa1040170:five_prime_UTR
GAAAGCTCTGGAGAGTGCTA+TGG 0.538754 7_1:+77525547 Msa1040170:CDS
CCAACAGTCCTAGGTGGCAC+CGG 0.539658 7_1:-77525074 None:intergenic
AGTAAAGGTGAAGAGATTGA+GGG 0.541297 7_1:-77522890 None:intergenic
ACAGTTTGGTATGGTTGCTG+AGG 0.542168 7_1:+77526331 Msa1040170:three_prime_UTR
ACCTACACACTCGACAGCAA+TGG 0.545629 7_1:+77525328 Msa1040170:CDS
AGATCGGAGATAAGATCAGA+TGG 0.545923 7_1:+77523074 Msa1040170:exon
GCTGTCGTATGCAATGGGTC+GGG 0.547190 7_1:-77522731 None:intergenic
ATAGAGTCAAAGCATAGTAA+AGG 0.547809 7_1:-77522905 None:intergenic
TTCAAATCTCCACTCCGTTG+CGG 0.550016 7_1:-77525194 None:intergenic
GTCTGAGCAGCATTTGAGAC+AGG 0.550440 7_1:-77524603 None:intergenic
TGAATATATCACCAGCCAGT+TGG 0.552081 7_1:+77526115 Msa1040170:three_prime_UTR
CAATGCCTTCAATTCGTCGT+CGG 0.554346 7_1:+77526245 Msa1040170:three_prime_UTR
AGTTTCCATTACCATAATCA+GGG 0.555080 7_1:-77526058 None:intergenic
GGTTATCTTGAAGTCCAACT+GGG 0.555376 7_1:-77524773 None:intergenic
CGGTGTAGTTGCAAAAGTAT+GGG 0.556383 7_1:-77525054 None:intergenic
CTGCGCAATTGCATGTGGAT+CGG 0.560127 7_1:-77523193 None:intergenic
TGTTTAGGATTTCCACCTAA+GGG 0.560176 7_1:-77525653 None:intergenic
ATTCAACATCATAACTCTGT+AGG 0.560856 7_1:-77526925 None:intergenic
CCGGTGCCACCTAGGACTGT+TGG 0.561100 7_1:+77525074 Msa1040170:CDS
GGATTTGATTCTAGATATCA+GGG 0.561545 7_1:+77524693 Msa1040170:CDS
CTCTTAGCTGCTGCAACTAG+TGG 0.562484 7_1:-77524471 None:intergenic
TGGACTACTCTCTTAGCTGG+AGG 0.562680 7_1:+77524504 Msa1040170:CDS
AGGCCTTGTACATATTCAGA+AGG 0.565970 7_1:-77525404 None:intergenic
AAATGTTCAAAACGGAGGAA+GGG 0.566489 7_1:+77524671 Msa1040170:CDS
GGCGAAGATATCGGTATGGT+GGG 0.567110 7_1:+77523140 Msa1040170:CDS
GGTGCTTTAACGCTGTATGT+TGG 0.568779 7_1:+77525599 Msa1040170:CDS
ATAAATAATTCGCAGGTGCA+GGG 0.569096 7_1:-77524353 None:intergenic
AGAAACCCGAGTCAACCAAA+TGG 0.569109 7_1:+77524729 Msa1040170:CDS
CGGCGAAGATATCGGTATGG+TGG 0.569397 7_1:+77523139 Msa1040170:CDS
TGGTCACCAAGATAGATTGA+AGG 0.573794 7_1:-77526561 None:intergenic
ATCAGCAACAAGAAATGCAA+CGG 0.574006 7_1:-77526898 None:intergenic
GAAATCAATAAATAATTCGC+AGG 0.575414 7_1:-77524360 None:intergenic
CTTCCCTCTAATGGTAAGTG+GGG 0.577253 7_1:+77525362 Msa1040170:CDS
TCCTCATTCGCAGTTGATGG+AGG 0.578055 7_1:-77524407 None:intergenic
GGTTTGACTCGGGAAGAGTA+AGG 0.583411 7_1:-77526001 None:intergenic
GGTGCAAAAGGAGGTTGCAA+TGG 0.586116 7_1:-77525008 None:intergenic
CGCACTGTTCCGCAACGGAG+TGG 0.587754 7_1:+77525185 Msa1040170:CDS
CTCCAGAGCTTTCTTAACAT+CGG 0.590270 7_1:-77525537 None:intergenic
CAGAAGCTTAAGACACAGGA+AGG 0.591686 7_1:-77526407 None:intergenic
GATGCTTGGGATCTCCATAA+CGG 0.593120 7_1:-77525508 None:intergenic
ATTAAGATCGGAGATAAGAT+CGG 0.593203 7_1:+77523058 Msa1040170:five_prime_UTR
ACGAGTGGTGTCACCGTAGG+CGG 0.595030 7_1:-77523268 None:intergenic
TGCTCAGACACAGCAACAGG+GGG 0.595588 7_1:+77524617 Msa1040170:CDS
CAGCACGCGCTTTCTAGCAC+CGG 0.596449 7_1:+77523306 Msa1040170:CDS
GAGTTGTTGTGTATCACCAC+TGG 0.599166 7_1:-77524538 None:intergenic
AGATAAGATCAGATGGGCGG+AGG 0.599612 7_1:+77523081 Msa1040170:exon
CCTCATTCGCAGTTGATGGA+GGG 0.600072 7_1:-77524406 None:intergenic
ACTTGTATAGTTTCAGAAGA+CGG 0.600079 7_1:-77524579 None:intergenic
AAACCTTCTGAATATGTACA+AGG 0.601145 7_1:+77525401 Msa1040170:CDS
CCCAGAACAGCATGTCGACA+AGG 0.601862 7_1:-77524320 None:intergenic
GCTTAGTTAACTATATATGG+TGG 0.605010 7_1:-77522853 None:intergenic
TCACTTAATCATGTTCCCGC+CGG 0.605523 7_1:+77523333 Msa1040170:CDS
ATGTTAAACAAACAGCTCCA+AGG 0.606915 7_1:-77526585 None:intergenic
GCTATCTGGACACAATTACA+AGG 0.607116 7_1:+77526792 Msa1040170:three_prime_UTR
GATCCCCACTTACCATTAGA+GGG 0.607911 7_1:-77525365 None:intergenic
CACTCCGTTGCGGAACAGTG+CGG 0.607972 7_1:-77525184 None:intergenic
AAGTGTGTAAATCCCTTAGG+TGG 0.612305 7_1:+77525641 Msa1040170:CDS
TGCTATGGAGCAGCAGATGG+TGG 0.612792 7_1:+77525562 Msa1040170:CDS
AAGTTTCAAATGTTGCAGGA+AGG 0.613758 7_1:+77526691 Msa1040170:three_prime_UTR
TCACCATGTTCAATATCTGA+AGG 0.616291 7_1:-77525926 None:intergenic
CTTGTTCGTATGAACTATTG+TGG 0.616869 7_1:+77523231 Msa1040170:CDS
TGAGCAGAAGCTTAAGACAC+AGG 0.619652 7_1:-77526411 None:intergenic
TCCGTTGCGGAACAGTGCGG+GGG 0.622717 7_1:-77525181 None:intergenic
TCATGGTAATGATATTGCAA+AGG 0.626813 7_1:+77527290 Msa1040170:three_prime_UTR
CCCATTGCTGTCGAGTGTGT+AGG 0.626853 7_1:-77525329 None:intergenic
CGAGTCAAACCCCGATTCAG+GGG 0.629328 7_1:+77526013 Msa1040170:CDS
CGACGGCGAAGATATCGGTA+TGG 0.634124 7_1:+77523136 Msa1040170:CDS
AGCAATAATGGTAATCAACA+AGG 0.635068 7_1:+77524897 Msa1040170:CDS
CTGCTCAGACACAGCAACAG+GGG 0.637667 7_1:+77524616 Msa1040170:CDS
TATTGCCGATCTACCAGCAG+GGG 0.638854 7_1:-77525720 None:intergenic
ATATTCTGCGCAATTGCATG+TGG 0.639515 7_1:-77523198 None:intergenic
TCGGGAAGAGTAAGGATGAG+TGG 0.640711 7_1:-77525993 None:intergenic
GAGTGCTATGGAGCAGCAGA+TGG 0.644619 7_1:+77525559 Msa1040170:CDS
TAAACAAACAGCTCCAAGGT+TGG 0.647216 7_1:-77526581 None:intergenic
AATTCAAATGTTCAAAACGG+AGG 0.648741 7_1:+77524666 Msa1040170:CDS
GCTGCTCAGACACAGCAACA+GGG 0.650440 7_1:+77524615 Msa1040170:CDS
AATGTAAACAATTATCGACC+TGG 0.651786 7_1:+77524801 Msa1040170:CDS
TCCATCAACTGCGAATGAGG+AGG 0.652227 7_1:+77524409 Msa1040170:CDS
GATCGGAGATAAGATCAGAT+GGG 0.656287 7_1:+77523075 Msa1040170:exon
ACCACTCAAGGCTATCCACA+TGG 0.657824 7_1:+77525293 Msa1040170:CDS
AGCGCGTGCTGTACAGACGC+AGG 0.658760 7_1:-77523294 None:intergenic
GTGCATAGCAGTACCACTCA+AGG 0.659605 7_1:+77525281 Msa1040170:CDS
GTATCACCACTGGTTAGTGG+AGG 0.662670 7_1:-77524528 None:intergenic
GGTTTGGATTGAGAGACTTG+AGG 0.663612 7_1:-77522686 None:intergenic
CAGAAGTCACCCCTGAATCG+GGG 0.665735 7_1:-77526022 None:intergenic
CGCGGAGGCGCAGTATACGA+CGG 0.668480 7_1:+77523119 Msa1040170:CDS
TATACGAGTGGTGTCACCGT+AGG 0.671792 7_1:-77523271 None:intergenic
CGGAGATAAGATCAGATGGG+CGG 0.673527 7_1:+77523078 Msa1040170:exon
TGTCCTTCAGATATTGAACA+TGG 0.677199 7_1:+77525923 Msa1040170:CDS
TTATTGCCGATCTACCAGCA+GGG 0.679539 7_1:-77525721 None:intergenic
GAAATCATCAAAATCAACAG+GGG 0.679631 7_1:+77524940 Msa1040170:CDS
GTTATCTTGAAGTCCAACTG+GGG 0.686988 7_1:-77524772 None:intergenic
AGGTGGAGCGACAACTAACG+CGG 0.688181 7_1:+77523101 Msa1040170:CDS
GGAGGACCTCCACTAACCAG+TGG 0.691674 7_1:+77524522 Msa1040170:CDS
AGTGAAAACTGGTAATGACA+AGG 0.692144 7_1:-77527225 None:intergenic
GGAAATCATCAAAATCAACA+GGG 0.697219 7_1:+77524939 Msa1040170:CDS
GGTTGATATTCTGGACCATG+TGG 0.700176 7_1:-77525308 None:intergenic
TTATCTTGAAGTCCAACTGG+GGG 0.703666 7_1:-77524771 None:intergenic
TACAGACGCAGGTATACGAG+TGG 0.706607 7_1:-77523283 None:intergenic
GAATTACTAGGTGCAAAAGG+AGG 0.707826 7_1:-77525017 None:intergenic
TGGAGCGACAACTAACGCGG+AGG 0.712925 7_1:+77523104 Msa1040170:CDS
TTGTTGCCAACAGTCCTAGG+TGG 0.727786 7_1:-77525080 None:intergenic
GGAAATCATCAAAATCAACA+GGG 0.731421 7_1:+77524918 Msa1040170:CDS
GCTCAGACACAGCAACAGGG+GGG 0.746430 7_1:+77524618 Msa1040170:CDS
ACCATGTGGATAGCCTTGAG+TGG 0.749894 7_1:-77525294 None:intergenic
ATCCACTGTGATGTATAACG+GGG 0.757583 7_1:-77526365 None:intergenic
TGCCCCGTTATACATCACAG+TGG 0.779311 7_1:+77526363 Msa1040170:three_prime_UTR
CAGCAACAAGAAATGCAACG+GGG 0.785002 7_1:-77526896 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATACTTATATAGATAAAATT+AGG + chr7_1:77523001-77523020 Msa1040170:five_prime_UTR 10.0%
!! GATAATTGTTTACATTATTA+CGG - chr7_1:77524797-77524816 None:intergenic 15.0%
!!! ATGAATATAGTCTATTTTAT+TGG - chr7_1:77525797-77525816 None:intergenic 15.0%
!!! ATGAATTATCCATTTTTTAT+GGG - chr7_1:77525955-77525974 None:intergenic 15.0%
!! TATCAAATATATCACTAAAA+CGG - chr7_1:77526506-77526525 None:intergenic 15.0%
!! AGCAAATGTAAATTTAAATA+CGG - chr7_1:77527080-77527099 None:intergenic 15.0%
!! ATTTAAATTTACATTTGCTT+TGG + chr7_1:77527081-77527100 Msa1040170:three_prime_UTR 15.0%
!! TTTGCTTAGTTAACTATATA+TGG - chr7_1:77522859-77522878 None:intergenic 20.0%
!!! TTGAATTTTTTCTCAGTATA+AGG + chr7_1:77523590-77523609 Msa1040170:intron 20.0%
!!! TGCGAATTATTTATTGATTT+CGG + chr7_1:77524362-77524381 Msa1040170:CDS 20.0%
!!! GATGAATTATCCATTTTTTA+TGG - chr7_1:77525956-77525975 None:intergenic 20.0%
!!! AGTATAACAAGTATCTTTTT+TGG + chr7_1:77526216-77526235 Msa1040170:three_prime_UTR 20.0%
!! TATGATGTTGAATAATTATC+CGG + chr7_1:77526935-77526954 Msa1040170:three_prime_UTR 20.0%
!!! ATTTTCATCTTTCTTTGTAT+TGG + chr7_1:77527133-77527152 Msa1040170:three_prime_UTR 20.0%
! AACATGATTAAGTGAAATTC+CGG - chr7_1:77523328-77523347 None:intergenic 25.0%
!! TTCATTTCTGTGATTGATTT+GGG + chr7_1:77523480-77523499 Msa1040170:intron 25.0%
!!! ATGGTTTTAAATTGTGATTG+CGG + chr7_1:77523629-77523648 Msa1040170:intron 25.0%
! TTTATGCAGAATTAAATTCC+CGG - chr7_1:77523726-77523745 None:intergenic 25.0%
!!! ATTTTATTTATCACGTGATG+CGG + chr7_1:77523804-77523823 Msa1040170:intron 25.0%
!! GGTATTAAAAATCTGATTTG+TGG + chr7_1:77523850-77523869 Msa1040170:intron 25.0%
! TTATCAAAATTACACCTCAA+AGG - chr7_1:77524021-77524040 None:intergenic 25.0%
!!! GAGGTGTAATTTTGATAATT+TGG + chr7_1:77524023-77524042 Msa1040170:intron 25.0%
!! TGTTGATTGAAAGATAGATT+TGG + chr7_1:77524098-77524117 Msa1040170:intron 25.0%
! TGTTGAACAGTTAATACATT+TGG + chr7_1:77524161-77524180 Msa1040170:intron 25.0%
!!! AATTTCACACTATTGATTTG+TGG - chr7_1:77524220-77524239 None:intergenic 25.0%
!!! GTGTGAAATTTTGATACATT+TGG + chr7_1:77524230-77524249 Msa1040170:intron 25.0%
!!! CTTTTTTCATGTTTGGTTAT+AGG + chr7_1:77524270-77524289 Msa1040170:intron 25.0%
! GAAATCAATAAATAATTCGC+AGG - chr7_1:77524363-77524382 None:intergenic 25.0%
!!! GCGAATTATTTATTGATTTC+GGG + chr7_1:77524363-77524382 Msa1040170:CDS 25.0%
! GGAAATTCAAATGTTCAAAA+CGG + chr7_1:77524663-77524682 Msa1040170:CDS 25.0%
! TTTGGAGAATATGAATTACT+AGG - chr7_1:77525032-77525051 None:intergenic 25.0%
! AATAATAAACTTCCCTCTAA+TGG + chr7_1:77525353-77525372 Msa1040170:CDS 25.0%
! ATGGTGGTAAAACAAAATTT+AGG + chr7_1:77525578-77525597 Msa1040170:CDS 25.0%
!!! TGAATCTATTCTATTTCTGT+AGG + chr7_1:77525844-77525863 Msa1040170:intron 25.0%
!!! TGTTTTAAAGATCTTGCTTT+GGG + chr7_1:77525897-77525916 Msa1040170:CDS 25.0%
!!! TTACTTTTATGAGTTTTCTC+TGG - chr7_1:77526094-77526113 None:intergenic 25.0%
! AGAATCATTCGAATAATTAC+TGG - chr7_1:77526142-77526161 None:intergenic 25.0%
!! TGTAGTATTTGGTATTTTTC+GGG - chr7_1:77526314-77526333 None:intergenic 25.0%
!! CTGTAGTATTTGGTATTTTT+CGG - chr7_1:77526315-77526334 None:intergenic 25.0%
! AAATACCAAATACTACAGTT+TGG + chr7_1:77526317-77526336 Msa1040170:three_prime_UTR 25.0%
!! CTACAAATATACATTTTGCT+CGG + chr7_1:77526446-77526465 Msa1040170:three_prime_UTR 25.0%
!! TACAAATATACATTTTGCTC+GGG + chr7_1:77526447-77526466 Msa1040170:three_prime_UTR 25.0%
! ATATTTCCTTCAATCTATCT+TGG + chr7_1:77526555-77526574 Msa1040170:three_prime_UTR 25.0%
! ACAAGGTATGTTTATTATGA+TGG + chr7_1:77526809-77526828 Msa1040170:three_prime_UTR 25.0%
!! GTTTTCAACATGATTCAAAA+TGG + chr7_1:77526861-77526880 Msa1040170:three_prime_UTR 25.0%
! CTAAATTCTTCATTGTATCA+TGG + chr7_1:77527273-77527292 Msa1040170:three_prime_UTR 25.0%
! GGTTTTTATGGCTATCATTT+TGG - chr7_1:77522806-77522825 None:intergenic 30.0%
!! TACACAAGATTCGGTTTTTA+TGG - chr7_1:77522818-77522837 None:intergenic 30.0%
GCTTAGTTAACTATATATGG+TGG - chr7_1:77522856-77522875 None:intergenic 30.0%
ATAGAGTCAAAGCATAGTAA+AGG - chr7_1:77522908-77522927 None:intergenic 30.0%
! TTAGTTTGAATCGATCTTTG+TGG + chr7_1:77523034-77523053 Msa1040170:five_prime_UTR 30.0%
GATCTTTGTGGAATTAAGAT+CGG + chr7_1:77523046-77523065 Msa1040170:five_prime_UTR 30.0%
ATTAAGATCGGAGATAAGAT+CGG + chr7_1:77523058-77523077 Msa1040170:five_prime_UTR 30.0%
AGCTATGATTTATGAACTGT+CGG + chr7_1:77523401-77523420 Msa1040170:intron 30.0%
GTTCATTTCTGTGATTGATT+TGG + chr7_1:77523479-77523498 Msa1040170:intron 30.0%
!!! ATTGATTTGGGTATTTTACG+CGG + chr7_1:77523492-77523511 Msa1040170:intron 30.0%
TTATGCAGAATTAAATTCCC+GGG - chr7_1:77523725-77523744 None:intergenic 30.0%
ACTTGTATAGTTTCAGAAGA+CGG - chr7_1:77524582-77524601 None:intergenic 30.0%
AATTCAAATGTTCAAAACGG+AGG + chr7_1:77524666-77524685 Msa1040170:CDS 30.0%
GGATTTGATTCTAGATATCA+GGG + chr7_1:77524693-77524712 Msa1040170:CDS 30.0%
AATGTAAACAATTATCGACC+TGG + chr7_1:77524801-77524820 Msa1040170:CDS 30.0%
TTACCATTATTGCTCCATAA+TGG - chr7_1:77524891-77524910 None:intergenic 30.0%
AGCAATAATGGTAATCAACA+AGG + chr7_1:77524897-77524916 Msa1040170:CDS 30.0%
AGGAAATCATCAAAATCAAC+AGG + chr7_1:77524917-77524936 Msa1040170:CDS 30.0%
GGAAATCATCAAAATCAACA+GGG + chr7_1:77524918-77524937 Msa1040170:CDS 30.0%
GGAAATCATCAAAATCAACA+GGG + chr7_1:77524918-77524937 Msa1040170:CDS 30.0%
GAAATCATCAAAATCAACAG+GGG + chr7_1:77524919-77524938 Msa1040170:CDS 30.0%
TATGAATTACTAGGTGCAAA+AGG - chr7_1:77525023-77525042 None:intergenic 30.0%
ATATCTGGTTATCCCAATAA+TGG + chr7_1:77525152-77525171 Msa1040170:CDS 30.0%
AGATCAACGAATGAACAAAA+TGG + chr7_1:77525251-77525270 Msa1040170:CDS 30.0%
GAATGAACAAAATGGACATA+TGG + chr7_1:77525259-77525278 Msa1040170:CDS 30.0%
TGTACATATTCAGAAGGTTT+AGG - chr7_1:77525401-77525420 None:intergenic 30.0%
AAACCTTCTGAATATGTACA+AGG + chr7_1:77525401-77525420 Msa1040170:CDS 30.0%
CAAGTAAAACAACACCTATA+AGG - chr7_1:77525427-77525446 None:intergenic 30.0%
TCAGTTATATTCTTCTCAGT+TGG - chr7_1:77525482-77525501 None:intergenic 30.0%
AATTTCGTCCCAAATTTCTT+TGG - chr7_1:77525684-77525703 None:intergenic 30.0%
AGAATAGATTCATCAGAATG+CGG - chr7_1:77525836-77525855 None:intergenic 30.0%
!!! GTGTTTTAAAGATCTTGCTT+TGG + chr7_1:77525896-77525915 Msa1040170:CDS 30.0%
TGGTGATAACCCATAAAAAA+TGG + chr7_1:77525943-77525962 Msa1040170:CDS 30.0%
AGTTTCCATTACCATAATCA+GGG - chr7_1:77526061-77526080 None:intergenic 30.0%
AAGTTTCCATTACCATAATC+AGG - chr7_1:77526062-77526081 None:intergenic 30.0%
!! TATGGTAATGGAAACTTGAA+AGG + chr7_1:77526065-77526084 Msa1040170:three_prime_UTR 30.0%
TCTCGTATGAATCAAACTAT+AGG + chr7_1:77526168-77526187 Msa1040170:three_prime_UTR 30.0%
CGAGCAAAATGTATATTTGT+AGG - chr7_1:77526448-77526467 None:intergenic 30.0%
! ACAAATATACATTTTGCTCG+GGG + chr7_1:77526448-77526467 Msa1040170:three_prime_UTR 30.0%
TTTCAGGGTGTATTGTAAAA+TGG + chr7_1:77526632-77526651 Msa1040170:three_prime_UTR 30.0%
CACTTAAAATTGCACAAGAT+TGG + chr7_1:77526733-77526752 Msa1040170:three_prime_UTR 30.0%
!! CAAACTCTTAATTTGCTATC+TGG + chr7_1:77526778-77526797 Msa1040170:three_prime_UTR 30.0%
ATTCAACATCATAACTCTGT+AGG - chr7_1:77526928-77526947 None:intergenic 30.0%
! TTTTTAGATGTACTCAGAAC+TGG + chr7_1:77527163-77527182 Msa1040170:three_prime_UTR 30.0%
! TAGCGATCAATTTGTTTGAT+CGG + chr7_1:77527188-77527207 Msa1040170:three_prime_UTR 30.0%
CAACAAATACAAGTGAAAAC+TGG - chr7_1:77527239-77527258 None:intergenic 30.0%
! TCATGGTAATGATATTGCAA+AGG + chr7_1:77527290-77527309 Msa1040170:three_prime_UTR 30.0%
TTTCTTCTTGCGTATTGCAT+GGG - chr7_1:77522710-77522729 None:intergenic 35.0%
! TTTTCTTCTTGCGTATTGCA+TGG - chr7_1:77522711-77522730 None:intergenic 35.0%
ATACGACAGCAATTGGAAAA+AGG + chr7_1:77522744-77522763 Msa1040170:five_prime_UTR 35.0%
TACGACAGCAATTGGAAAAA+GGG + chr7_1:77522745-77522764 Msa1040170:five_prime_UTR 35.0%
TGAAGAGACTACACAAGATT+CGG - chr7_1:77522827-77522846 None:intergenic 35.0%
!!! AGAGATTGAGGGTTTTGTTT+TGG - chr7_1:77522882-77522901 None:intergenic 35.0%
AGTAAAGGTGAAGAGATTGA+GGG - chr7_1:77522893-77522912 None:intergenic 35.0%
TAGTAAAGGTGAAGAGATTG+AGG - chr7_1:77522894-77522913 None:intergenic 35.0%
GAAAACTGTCATGTTCCTAA+AGG + chr7_1:77523168-77523187 Msa1040170:CDS 35.0%
CTTGTTCGTATGAACTATTG+TGG + chr7_1:77523231-77523250 Msa1040170:CDS 35.0%
AATCGAAGTAAGTTCGTTAC+CGG - chr7_1:77523355-77523374 None:intergenic 35.0%
!! AGGTGATTTGATTTGAAGCA+TGG + chr7_1:77523610-77523629 Msa1040170:intron 35.0%
TATTGTGATAGCTGATACTG+TGG + chr7_1:77523672-77523691 Msa1040170:intron 35.0%
ATTATAGCCCTGACTTATTG+CGG + chr7_1:77523748-77523767 Msa1040170:intron 35.0%
TGTGTATTGCTGTAATTTCG+TGG + chr7_1:77523780-77523799 Msa1040170:intron 35.0%
GTGTATTGCTGTAATTTCGT+GGG + chr7_1:77523781-77523800 Msa1040170:intron 35.0%
TGGTTCACTTGAAACATTCA+CGG + chr7_1:77524118-77524137 Msa1040170:intron 35.0%
!! AAACATTCACGGTTGATTTG+TGG + chr7_1:77524129-77524148 Msa1040170:intron 35.0%
!!! GCTGAAGCTTTTTTCATGTT+TGG + chr7_1:77524263-77524282 Msa1040170:intron 35.0%
ATAAATAATTCGCAGGTGCA+GGG - chr7_1:77524356-77524375 None:intergenic 35.0%
AATAAATAATTCGCAGGTGC+AGG - chr7_1:77524357-77524376 None:intergenic 35.0%
CCAGCATGAATTTCAGAATA+GGG - chr7_1:77524645-77524664 None:intergenic 35.0%
TCCAGCATGAATTTCAGAAT+AGG - chr7_1:77524646-77524665 None:intergenic 35.0%
AAATGTTCAAAACGGAGGAA+GGG + chr7_1:77524671-77524690 Msa1040170:CDS 35.0%
GGGATTTGATTCTAGATATC+AGG + chr7_1:77524692-77524711 Msa1040170:CDS 35.0%
ACATTTGGATTATAGTTGCC+AGG - chr7_1:77524822-77524841 None:intergenic 35.0%
AATCCAAATGTTCCTCAAAG+TGG + chr7_1:77524831-77524850 Msa1040170:CDS 35.0%
GATCCATTATGGAGCAATAA+TGG + chr7_1:77524885-77524904 Msa1040170:CDS 35.0%
GGGAAATCATCAAAATCAAC+AGG + chr7_1:77524938-77524957 Msa1040170:CDS 35.0%
! GTTGCAAAAGTATGGGAATT+TGG - chr7_1:77525050-77525069 None:intergenic 35.0%
ATGTTCAGATTGCCAATATC+TGG - chr7_1:77525134-77525153 None:intergenic 35.0%
ATTGGCAATCTGAACATATC+TGG + chr7_1:77525137-77525156 Msa1040170:CDS 35.0%
TGTTCATTCGTTGATCTTAC+CGG - chr7_1:77525248-77525267 None:intergenic 35.0%
! GAATATGTACAAGGCCTTAT+AGG + chr7_1:77525410-77525429 Msa1040170:CDS 35.0%
!!! GGCATTTTTTAGTGAGTTCA+GGG - chr7_1:77525450-77525469 None:intergenic 35.0%
!!! TGGCATTTTTTAGTGAGTTC+AGG - chr7_1:77525451-77525470 None:intergenic 35.0%
ATAACTGATAGCATCCGTTA+TGG + chr7_1:77525494-77525513 Msa1040170:CDS 35.0%
TTGGTAAGAATGACAAACTC+TGG + chr7_1:77525618-77525637 Msa1040170:CDS 35.0%
! TGTTTAGGATTTCCACCTAA+GGG - chr7_1:77525656-77525675 None:intergenic 35.0%
!! ATTTCTTTGGAGTGCTGTTT+AGG - chr7_1:77525671-77525690 None:intergenic 35.0%
AACAGCACTCCAAAGAAATT+TGG + chr7_1:77525672-77525691 Msa1040170:CDS 35.0%
ACAGCACTCCAAAGAAATTT+GGG + chr7_1:77525673-77525692 Msa1040170:CDS 35.0%
AATAGATTCATCAGAATGCG+GGG - chr7_1:77525834-77525853 None:intergenic 35.0%
GAATAGATTCATCAGAATGC+GGG - chr7_1:77525835-77525854 None:intergenic 35.0%
! TATTTCTGTAGGTATGAAGC+AGG + chr7_1:77525855-77525874 Msa1040170:intron 35.0%
TGTCCTTCAGATATTGAACA+TGG + chr7_1:77525923-77525942 Msa1040170:CDS 35.0%
TCACCATGTTCAATATCTGA+AGG - chr7_1:77525929-77525948 None:intergenic 35.0%
CCATACCAAACTGTAGTATT+TGG - chr7_1:77526325-77526344 None:intergenic 35.0%
CCAAATACTACAGTTTGGTA+TGG + chr7_1:77526322-77526341 Msa1040170:three_prime_UTR 35.0%
AGATCCACTGTGATGTATAA+CGG - chr7_1:77526370-77526389 None:intergenic 35.0%
AGGAAATATCTCGACACATT+TGG - chr7_1:77526544-77526563 None:intergenic 35.0%
ATGTTAAACAAACAGCTCCA+AGG - chr7_1:77526588-77526607 None:intergenic 35.0%
! TCTACCAAGTCAGATTTTTC+AGG + chr7_1:77526616-77526635 Msa1040170:three_prime_UTR 35.0%
! CTACCAAGTCAGATTTTTCA+GGG + chr7_1:77526617-77526636 Msa1040170:three_prime_UTR 35.0%
AGCGTCAAATGAACAAATTC+TGG - chr7_1:77526662-77526681 None:intergenic 35.0%
TTCGAAGTTTCAAATGTTGC+AGG + chr7_1:77526687-77526706 Msa1040170:three_prime_UTR 35.0%
AAGTTTCAAATGTTGCAGGA+AGG + chr7_1:77526691-77526710 Msa1040170:three_prime_UTR 35.0%
ATCAGCAACAAGAAATGCAA+CGG - chr7_1:77526901-77526920 None:intergenic 35.0%
! TTATCCGGAAATACAGCTTT+TGG + chr7_1:77526950-77526969 Msa1040170:three_prime_UTR 35.0%
ACATCCAAAAGCTGTATTTC+CGG - chr7_1:77526957-77526976 None:intergenic 35.0%
! AAATACAGCTTTTGGATGTC+TGG + chr7_1:77526958-77526977 Msa1040170:three_prime_UTR 35.0%
!! CTGGCTCTATATACTGAATT+TGG + chr7_1:77526977-77526996 Msa1040170:three_prime_UTR 35.0%
! AGTGAAAACTGGTAATGACA+AGG - chr7_1:77527228-77527247 None:intergenic 35.0%
CAATTGCTGTCGTATGCAAT+GGG - chr7_1:77522739-77522758 None:intergenic 40.0%
AGATCGGAGATAAGATCAGA+TGG + chr7_1:77523074-77523093 Msa1040170:exon 40.0%
GATCGGAGATAAGATCAGAT+GGG + chr7_1:77523075-77523094 Msa1040170:exon 40.0%
ATATTCTGCGCAATTGCATG+TGG - chr7_1:77523201-77523220 None:intergenic 40.0%
CGCAGTTTGTACTGTCTATA+TGG + chr7_1:77523829-77523848 Msa1040170:intron 40.0%
!! CCCTATTCTGAAATTCATGC+TGG + chr7_1:77524642-77524661 Msa1040170:CDS 40.0%
CAAATGTTCAAAACGGAGGA+AGG + chr7_1:77524670-77524689 Msa1040170:CDS 40.0%
AATGTTCAAAACGGAGGAAG+GGG + chr7_1:77524672-77524691 Msa1040170:CDS 40.0%
TTATCTTGAAGTCCAACTGG+GGG - chr7_1:77524774-77524793 None:intergenic 40.0%
GTTATCTTGAAGTCCAACTG+GGG - chr7_1:77524775-77524794 None:intergenic 40.0%
GGTTATCTTGAAGTCCAACT+GGG - chr7_1:77524776-77524795 None:intergenic 40.0%
! GATCCACTTTGAGGAACATT+TGG - chr7_1:77524837-77524856 None:intergenic 40.0%
TTTGTGGTTGATCCACTTTG+AGG - chr7_1:77524846-77524865 None:intergenic 40.0%
!! GCTCCATAATGGATCAGAAT+TGG - chr7_1:77524880-77524899 None:intergenic 40.0%
!! GGAAAACCGTTTGGTCTTAA+TGG - chr7_1:77524990-77525009 None:intergenic 40.0%
GAATTACTAGGTGCAAAAGG+AGG - chr7_1:77525020-77525039 None:intergenic 40.0%
! CGGTGTAGTTGCAAAAGTAT+GGG - chr7_1:77525057-77525076 None:intergenic 40.0%
! CCATACTTTTGCAACTACAC+CGG + chr7_1:77525055-77525074 Msa1040170:CDS 40.0%
AAATTGTTGCCAACAGTCCT+AGG - chr7_1:77525086-77525105 None:intergenic 40.0%
GTTGGCAACAATTTCAGTAC+AGG + chr7_1:77525092-77525111 Msa1040170:CDS 40.0%
!! GAGTGTGTAGGTTGATATTC+TGG - chr7_1:77525320-77525339 None:intergenic 40.0%
AACTTCCCTCTAATGGTAAG+TGG + chr7_1:77525360-77525379 Msa1040170:CDS 40.0%
ACTTCCCTCTAATGGTAAGT+GGG + chr7_1:77525361-77525380 Msa1040170:CDS 40.0%
! AGGCCTTGTACATATTCAGA+AGG - chr7_1:77525407-77525426 None:intergenic 40.0%
CTCCAGAGCTTTCTTAACAT+CGG - chr7_1:77525540-77525559 None:intergenic 40.0%
! TGGAAGTGTGTAAATCCCTT+AGG + chr7_1:77525638-77525657 Msa1040170:CDS 40.0%
AAGTGTGTAAATCCCTTAGG+TGG + chr7_1:77525641-77525660 Msa1040170:CDS 40.0%
! CTGTTTAGGATTTCCACCTA+AGG - chr7_1:77525657-77525676 None:intergenic 40.0%
! AATTTTCTAACAACCCCTGC+TGG + chr7_1:77525707-77525726 Msa1040170:CDS 40.0%
! AGAATGCGGGGATATCTTTT+AGG - chr7_1:77525822-77525841 None:intergenic 40.0%
TGGATAATTCATCAGCAGTC+TGG + chr7_1:77525963-77525982 Msa1040170:CDS 40.0%
TGAATATATCACCAGCCAGT+TGG + chr7_1:77526115-77526134 Msa1040170:three_prime_UTR 40.0%
CGAATAATTACTGGTCCAAC+TGG - chr7_1:77526133-77526152 None:intergenic 40.0%
AATTCGTCGTCGGAGATAAA+TGG + chr7_1:77526255-77526274 Msa1040170:three_prime_UTR 40.0%
ATCCACTGTGATGTATAACG+GGG - chr7_1:77526368-77526387 None:intergenic 40.0%
GATCCACTGTGATGTATAAC+GGG - chr7_1:77526369-77526388 None:intergenic 40.0%
ACATCACAGTGGATCTATCT+TGG + chr7_1:77526374-77526393 Msa1040170:three_prime_UTR 40.0%
GGAGTTCTTCCTTATTAGAC+TGG + chr7_1:77526469-77526488 Msa1040170:three_prime_UTR 40.0%
CCAAGTAGTCCAGTCTAATA+AGG - chr7_1:77526481-77526500 None:intergenic 40.0%
CCTTATTAGACTGGACTACT+TGG + chr7_1:77526478-77526497 Msa1040170:three_prime_UTR 40.0%
TGGTCACCAAGATAGATTGA+AGG - chr7_1:77526564-77526583 None:intergenic 40.0%
TAAACAAACAGCTCCAAGGT+TGG - chr7_1:77526584-77526603 None:intergenic 40.0%
ACACCCTGAAAAATCTGACT+TGG - chr7_1:77526623-77526642 None:intergenic 40.0%
GCTATCTGGACACAATTACA+AGG + chr7_1:77526792-77526811 Msa1040170:three_prime_UTR 40.0%
TCAGCAACAAGAAATGCAAC+GGG - chr7_1:77526900-77526919 None:intergenic 40.0%
GTTGCATTTCTTGTTGCTGA+TGG + chr7_1:77526900-77526919 Msa1040170:three_prime_UTR 40.0%
! TTGGTGATTTAGTCGCGAAT+TGG + chr7_1:77526996-77527015 Msa1040170:three_prime_UTR 40.0%
CTATTGCCTCTTAATGTCAG+TGG + chr7_1:77527038-77527057 Msa1040170:three_prime_UTR 40.0%
TTGAGGTGGAGAGTAGTGTT+TGG - chr7_1:77522672-77522691 None:intergenic 45.0%
TTGGATTGAGAGACTTGAGG+TGG - chr7_1:77522686-77522705 None:intergenic 45.0%
GGTTTGGATTGAGAGACTTG+AGG - chr7_1:77522689-77522708 None:intergenic 45.0%
TCTTGCGTATTGCATGGGTT+TGG - chr7_1:77522705-77522724 None:intergenic 45.0%
CCAATTGCTGTCGTATGCAA+TGG - chr7_1:77522740-77522759 None:intergenic 45.0%
CCATTGCATACGACAGCAAT+TGG + chr7_1:77522737-77522756 Msa1040170:five_prime_UTR 45.0%
GTATACGACGGCGAAGATAT+CGG + chr7_1:77523131-77523150 Msa1040170:CDS 45.0%
TCACTTAATCATGTTCCCGC+CGG + chr7_1:77523333-77523352 Msa1040170:CDS 45.0%
TTTGACGAGAATCAGCAACG+TGG + chr7_1:77523535-77523554 Msa1040170:intron 45.0%
!! GATTGCGGTAGAAGTTGATG+TGG + chr7_1:77523644-77523663 Msa1040170:intron 45.0%
GCAAACACCGCAATAAGTCA+GGG - chr7_1:77523758-77523777 None:intergenic 45.0%
CTTGTTTGCTTCCTTTCTCG+AGG + chr7_1:77523893-77523912 Msa1040170:intron 45.0%
ACATCTCAAAGCCTCGAGAA+AGG - chr7_1:77523907-77523926 None:intergenic 45.0%
CTTCCTTTCTTGAGCCTTTG+AGG + chr7_1:77524004-77524023 Msa1040170:intron 45.0%
ACACCTCAAAGGCTCAAGAA+AGG - chr7_1:77524010-77524029 None:intergenic 45.0%
!! AGTGGTGCAGATGCTTTTTG+AGG - chr7_1:77524456-77524475 None:intergenic 45.0%
! TTGCAGCAGCTAAGAGTGTA+TGG + chr7_1:77524478-77524497 Msa1040170:CDS 45.0%
! CAGCTAAGAGTGTATGGCTT+TGG + chr7_1:77524484-77524503 Msa1040170:CDS 45.0%
CTTTGGACTACTCTCTTAGC+TGG + chr7_1:77524501-77524520 Msa1040170:CDS 45.0%
! TGTGTATCACCACTGGTTAG+TGG - chr7_1:77524534-77524553 None:intergenic 45.0%
GAGTTGTTGTGTATCACCAC+TGG - chr7_1:77524541-77524560 None:intergenic 45.0%
GATATCAGGGTAGACCAACT+TGG + chr7_1:77524706-77524725 Msa1040170:CDS 45.0%
AGAAACCCGAGTCAACCAAA+TGG + chr7_1:77524729-77524748 Msa1040170:CDS 45.0%
TTCGGTCCATTTGGTTGACT+CGG - chr7_1:77524738-77524757 None:intergenic 45.0%
TTCATGGCTTTCGGTCCATT+TGG - chr7_1:77524747-77524766 None:intergenic 45.0%
CGGTTATCTTGAAGTCCAAC+TGG - chr7_1:77524777-77524796 None:intergenic 45.0%
GCGCCAATTCTGATCCATTA+TGG + chr7_1:77524874-77524893 Msa1040170:CDS 45.0%
GGTCTTAATGGCTGGGAATA+TGG - chr7_1:77524978-77524997 None:intergenic 45.0%
TCCCAGCCATTAAGACCAAA+CGG + chr7_1:77524981-77525000 Msa1040170:CDS 45.0%
!! ACCGTTTGGTCTTAATGGCT+GGG - chr7_1:77524985-77525004 None:intergenic 45.0%
!! AACCGTTTGGTCTTAATGGC+TGG - chr7_1:77524986-77525005 None:intergenic 45.0%
GGTTGCAATGGAAAACCGTT+TGG - chr7_1:77524999-77525018 None:intergenic 45.0%
CCGGTGTAGTTGCAAAAGTA+TGG - chr7_1:77525058-77525077 None:intergenic 45.0%
CCAATATCTGGCACAGTTCT+AGG - chr7_1:77525122-77525141 None:intergenic 45.0%
CCTAGAACTGTGCCAGATAT+TGG + chr7_1:77525119-77525138 Msa1040170:CDS 45.0%
CGGGGGTTATGACCATTATT+GGG - chr7_1:77525167-77525186 None:intergenic 45.0%
TTCAAATCTCCACTCCGTTG+CGG - chr7_1:77525197-77525216 None:intergenic 45.0%
! GGAGCACTACTCTTAGGATT+CGG - chr7_1:77525221-77525240 None:intergenic 45.0%
TAAGAGTAGTGCTCCACTTC+CGG + chr7_1:77525226-77525245 Msa1040170:CDS 45.0%
TTCGTTGATCTTACCGGAAG+TGG - chr7_1:77525242-77525261 None:intergenic 45.0%
! GGTTGATATTCTGGACCATG+TGG - chr7_1:77525311-77525330 None:intergenic 45.0%
CTTCCCTCTAATGGTAAGTG+GGG + chr7_1:77525362-77525381 Msa1040170:CDS 45.0%
GATCCCCACTTACCATTAGA+GGG - chr7_1:77525368-77525387 None:intergenic 45.0%
AGATCCCCACTTACCATTAG+AGG - chr7_1:77525369-77525388 None:intergenic 45.0%
AATGGTAAGTGGGGATCTTC+AGG + chr7_1:77525371-77525390 Msa1040170:CDS 45.0%
CTTCTCAGTTGGCATCATCT+TGG - chr7_1:77525471-77525490 None:intergenic 45.0%
GATGCTTGGGATCTCCATAA+CGG - chr7_1:77525511-77525530 None:intergenic 45.0%
CACCGATGTTAAGAAAGCTC+TGG + chr7_1:77525535-77525554 Msa1040170:CDS 45.0%
GGTGCTTTAACGCTGTATGT+TGG + chr7_1:77525599-77525618 Msa1040170:CDS 45.0%
TTATTGCCGATCTACCAGCA+GGG - chr7_1:77525724-77525743 None:intergenic 45.0%
ATTATTGCCGATCTACCAGC+AGG - chr7_1:77525725-77525744 None:intergenic 45.0%
TGCTGGTAGATCGGCAATAA+TGG + chr7_1:77525724-77525743 Msa1040170:CDS 45.0%
TAATTCATCAGCAGTCTGGC+TGG + chr7_1:77525967-77525986 Msa1040170:CDS 45.0%
CAGCACCCTGATTATGGTAA+TGG + chr7_1:77526053-77526072 Msa1040170:three_prime_UTR 45.0%
TAATTACTGGTCCAACTGGC+TGG - chr7_1:77526129-77526148 None:intergenic 45.0%
CAATGCCTTCAATTCGTCGT+CGG + chr7_1:77526245-77526264 Msa1040170:three_prime_UTR 45.0%
TATCTCCGACGACGAATTGA+AGG - chr7_1:77526253-77526272 None:intergenic 45.0%
ACAGTTTGGTATGGTTGCTG+AGG + chr7_1:77526331-77526350 Msa1040170:three_prime_UTR 45.0%
CAGAAGCTTAAGACACAGGA+AGG - chr7_1:77526410-77526429 None:intergenic 45.0%
TGAGCAGAAGCTTAAGACAC+AGG - chr7_1:77526414-77526433 None:intergenic 45.0%
! TCTATCTTGGTGACCAACCT+TGG + chr7_1:77526568-77526587 Msa1040170:three_prime_UTR 45.0%
CAGCAACAAGAAATGCAACG+GGG - chr7_1:77526899-77526918 None:intergenic 45.0%
! TTTAGTCGCGAATTGGTCTC+TGG + chr7_1:77527003-77527022 Msa1040170:three_prime_UTR 45.0%
CAGCTACCACTGACATTAAG+AGG - chr7_1:77527047-77527066 None:intergenic 45.0%
TGCTGTCGTATGCAATGGGT+CGG - chr7_1:77522735-77522754 None:intergenic 50.0%
CGGAGATAAGATCAGATGGG+CGG + chr7_1:77523078-77523097 Msa1040170:exon 50.0%
AGATAAGATCAGATGGGCGG+AGG + chr7_1:77523081-77523100 Msa1040170:exon 50.0%
GGCGAAGATATCGGTATGGT+GGG + chr7_1:77523140-77523159 Msa1040170:CDS 50.0%
CTGCGCAATTGCATGTGGAT+CGG - chr7_1:77523196-77523215 None:intergenic 50.0%
!! TATACGAGTGGTGTCACCGT+AGG - chr7_1:77523274-77523293 None:intergenic 50.0%
TACAGACGCAGGTATACGAG+TGG - chr7_1:77523286-77523305 None:intergenic 50.0%
GAAGTAAGTTCGTTACCGGC+GGG - chr7_1:77523351-77523370 None:intergenic 50.0%
CGAAGTAAGTTCGTTACCGG+CGG - chr7_1:77523352-77523371 None:intergenic 50.0%
! TGTGTGTTGCTGTGATTGCC+CGG + chr7_1:77523704-77523723 Msa1040170:intron 50.0%
CGCAAACACCGCAATAAGTC+AGG - chr7_1:77523759-77523778 None:intergenic 50.0%
TCCTTGTCGACATGCTGTTC+TGG + chr7_1:77524319-77524338 Msa1040170:CDS 50.0%
CCTTGTCGACATGCTGTTCT+GGG + chr7_1:77524320-77524339 Msa1040170:CDS 50.0%
!! CCTCATTCGCAGTTGATGGA+GGG - chr7_1:77524409-77524428 None:intergenic 50.0%
!! TCCTCATTCGCAGTTGATGG+AGG - chr7_1:77524410-77524429 None:intergenic 50.0%
TCCATCAACTGCGAATGAGG+AGG + chr7_1:77524409-77524428 Msa1040170:CDS 50.0%
ACCTCCTCATTCGCAGTTGA+TGG - chr7_1:77524413-77524432 None:intergenic 50.0%
CTCTTAGCTGCTGCAACTAG+TGG - chr7_1:77524474-77524493 None:intergenic 50.0%
TGGACTACTCTCTTAGCTGG+AGG + chr7_1:77524504-77524523 Msa1040170:CDS 50.0%
! GTATCACCACTGGTTAGTGG+AGG - chr7_1:77524531-77524550 None:intergenic 50.0%
! GTCTGAGCAGCATTTGAGAC+AGG - chr7_1:77524606-77524625 None:intergenic 50.0%
! TGACTCGGGTTTCTCCAAGT+TGG - chr7_1:77524723-77524742 None:intergenic 50.0%
! TCGGTCCATTTGGTTGACTC+GGG - chr7_1:77524737-77524756 None:intergenic 50.0%
ATTGGCGCGCTCAAAGTTTG+TGG - chr7_1:77524862-77524881 None:intergenic 50.0%
GGTGCAAAAGGAGGTTGCAA+TGG - chr7_1:77525011-77525030 None:intergenic 50.0%
TTGTTGCCAACAGTCCTAGG+TGG - chr7_1:77525083-77525102 None:intergenic 50.0%
GCGGGGGTTATGACCATTAT+TGG - chr7_1:77525168-77525187 None:intergenic 50.0%
! GGAAGTGGAGCACTACTCTT+AGG - chr7_1:77525227-77525246 None:intergenic 50.0%
GTGCATAGCAGTACCACTCA+AGG + chr7_1:77525281-77525300 Msa1040170:CDS 50.0%
ACCACTCAAGGCTATCCACA+TGG + chr7_1:77525293-77525312 Msa1040170:CDS 50.0%
! ACCATGTGGATAGCCTTGAG+TGG - chr7_1:77525297-77525316 None:intergenic 50.0%
ACCTACACACTCGACAGCAA+TGG + chr7_1:77525328-77525347 Msa1040170:CDS 50.0%
CCTACACACTCGACAGCAAT+GGG + chr7_1:77525329-77525348 Msa1040170:CDS 50.0%
!! ACATCGGTGTTGCGATGCTT+GGG - chr7_1:77525524-77525543 None:intergenic 50.0%
!! AACATCGGTGTTGCGATGCT+TGG - chr7_1:77525525-77525544 None:intergenic 50.0%
!! GAAAGCTCTGGAGAGTGCTA+TGG + chr7_1:77525547-77525566 Msa1040170:CDS 50.0%
AACAACCCCTGCTGGTAGAT+CGG + chr7_1:77525715-77525734 Msa1040170:CDS 50.0%
TATTGCCGATCTACCAGCAG+GGG - chr7_1:77525723-77525742 None:intergenic 50.0%
TCGGGAAGAGTAAGGATGAG+TGG - chr7_1:77525996-77526015 None:intergenic 50.0%
!! GGTTTGACTCGGGAAGAGTA+AGG - chr7_1:77526004-77526023 None:intergenic 50.0%
TCAGAAGTCACCCCTGAATC+GGG - chr7_1:77526026-77526045 None:intergenic 50.0%
GTCAGAAGTCACCCCTGAAT+CGG - chr7_1:77526027-77526046 None:intergenic 50.0%
GCATAGCAGCACCCTGATTA+TGG + chr7_1:77526047-77526066 Msa1040170:exon 50.0%
TGCCCCGTTATACATCACAG+TGG + chr7_1:77526363-77526382 Msa1040170:three_prime_UTR 50.0%
GCTGTCGTATGCAATGGGTC+GGG - chr7_1:77522734-77522753 None:intergenic 55.0%
TAAGATCAGATGGGCGGAGG+TGG + chr7_1:77523084-77523103 Msa1040170:exon 55.0%
AGGTGGAGCGACAACTAACG+CGG + chr7_1:77523101-77523120 Msa1040170:CDS 55.0%
CGACGGCGAAGATATCGGTA+TGG + chr7_1:77523136-77523155 Msa1040170:CDS 55.0%
CGGCGAAGATATCGGTATGG+TGG + chr7_1:77523139-77523158 Msa1040170:CDS 55.0%
GCATGTGGATCGGAGCCTTT+AGG - chr7_1:77523186-77523205 None:intergenic 55.0%
ACCGTAGGCGGAGATGGAAA+CGG - chr7_1:77523259-77523278 None:intergenic 55.0%
! GTGTGTTGCTGTGATTGCCC+GGG + chr7_1:77523705-77523724 Msa1040170:intron 55.0%
CCCAGAACAGCATGTCGACA+AGG - chr7_1:77524323-77524342 None:intergenic 55.0%
CCCTCCATCAACTGCGAATG+AGG + chr7_1:77524406-77524425 Msa1040170:CDS 55.0%
TGCTGCTCAGACACAGCAAC+AGG + chr7_1:77524614-77524633 Msa1040170:CDS 55.0%
GCTGCTCAGACACAGCAACA+GGG + chr7_1:77524615-77524634 Msa1040170:CDS 55.0%
CTGCTCAGACACAGCAACAG+GGG + chr7_1:77524616-77524635 Msa1040170:CDS 55.0%
TGCTCAGACACAGCAACAGG+GGG + chr7_1:77524617-77524636 Msa1040170:CDS 55.0%
! GGGGGTGGATTCATGGCTTT+CGG - chr7_1:77524756-77524775 None:intergenic 55.0%
! TCCAACTGGGGGTGGATTCA+TGG - chr7_1:77524763-77524782 None:intergenic 55.0%
TCTTGAAGTCCAACTGGGGG+TGG - chr7_1:77524771-77524790 None:intergenic 55.0%
CCCATTGCTGTCGAGTGTGT+AGG - chr7_1:77525332-77525351 None:intergenic 55.0%
GAGTGCTATGGAGCAGCAGA+TGG + chr7_1:77525559-77525578 Msa1040170:CDS 55.0%
TGCTATGGAGCAGCAGATGG+TGG + chr7_1:77525562-77525581 Msa1040170:CDS 55.0%
CCTGAATCGGGGTTTGACTC+GGG - chr7_1:77526014-77526033 None:intergenic 55.0%
CCCTGAATCGGGGTTTGACT+CGG - chr7_1:77526015-77526034 None:intergenic 55.0%
CCGAGTCAAACCCCGATTCA+GGG + chr7_1:77526012-77526031 Msa1040170:CDS 55.0%
CGAGTCAAACCCCGATTCAG+GGG + chr7_1:77526013-77526032 Msa1040170:CDS 55.0%
CAGAAGTCACCCCTGAATCG+GGG - chr7_1:77526025-77526044 None:intergenic 55.0%
TGGAGCGACAACTAACGCGG+AGG + chr7_1:77523104-77523123 Msa1040170:CDS 60.0%
CCGTAGGCGGAGATGGAAAC+GGG - chr7_1:77523258-77523277 None:intergenic 60.0%
CCCGTTTCCATCTCCGCCTA+CGG + chr7_1:77523255-77523274 Msa1040170:CDS 60.0%
!! ACGAGTGGTGTCACCGTAGG+CGG - chr7_1:77523271-77523290 None:intergenic 60.0%
! CAGCACGCGCTTTCTAGCAC+CGG + chr7_1:77523306-77523325 Msa1040170:CDS 60.0%
! CGACATGCTGTTCTGGGCAG+TGG + chr7_1:77524326-77524345 Msa1040170:CDS 60.0%
GGAGGACCTCCACTAACCAG+TGG + chr7_1:77524522-77524541 Msa1040170:CDS 60.0%
GCTCAGACACAGCAACAGGG+GGG + chr7_1:77524618-77524637 Msa1040170:CDS 60.0%
GCCATGAATCCACCCCCAGT+TGG + chr7_1:77524759-77524778 Msa1040170:CDS 60.0%
!! CAACTACACCGGTGCCACCT+AGG + chr7_1:77525066-77525085 Msa1040170:CDS 60.0%
CCAACAGTCCTAGGTGGCAC+CGG - chr7_1:77525077-77525096 None:intergenic 60.0%
ACTCCGTTGCGGAACAGTGC+GGG - chr7_1:77525186-77525205 None:intergenic 60.0%
CACTCCGTTGCGGAACAGTG+CGG - chr7_1:77525187-77525206 None:intergenic 60.0%
CCCGAGTCAAACCCCGATTC+AGG + chr7_1:77526011-77526030 Msa1040170:CDS 60.0%
! CGCGGAGGCGCAGTATACGA+CGG + chr7_1:77523119-77523138 Msa1040170:CDS 65.0%
! GGTGTCACCGTAGGCGGAGA+TGG - chr7_1:77523265-77523284 None:intergenic 65.0%
AGCGCGTGCTGTACAGACGC+AGG - chr7_1:77523297-77523316 None:intergenic 65.0%
!! CCGGTGCCACCTAGGACTGT+TGG + chr7_1:77525074-77525093 Msa1040170:CDS 65.0%
ACCCCCGCACTGTTCCGCAA+CGG + chr7_1:77525180-77525199 Msa1040170:CDS 65.0%
TCCGTTGCGGAACAGTGCGG+GGG - chr7_1:77525184-77525203 None:intergenic 65.0%
CTCCGTTGCGGAACAGTGCG+GGG - chr7_1:77525185-77525204 None:intergenic 65.0%
CGCACTGTTCCGCAACGGAG+TGG + chr7_1:77525185-77525204 Msa1040170:CDS 65.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 77522668 77527324 77522668 ID=Msa1040170;Name=Msa1040170
chr7_1 mRNA 77522668 77527324 77522668 ID=Msa1040170-mRNA-1;Parent=Msa1040170;Name=Msa1040170-mRNA-1;_AED=0.01;_eAED=0.01;_QI=425|1|1|1|1|1|3|1272|638
chr7_1 exon 77522668 77523354 77522668 ID=Msa1040170-mRNA-1:exon:20413;Parent=Msa1040170-mRNA-1
chr7_1 exon 77524292 77525759 77524292 ID=Msa1040170-mRNA-1:exon:20414;Parent=Msa1040170-mRNA-1
chr7_1 exon 77525866 77527324 77525866 ID=Msa1040170-mRNA-1:exon:20415;Parent=Msa1040170-mRNA-1
chr7_1 five_prime_UTR 77522668 77523092 77522668 ID=Msa1040170-mRNA-1:five_prime_utr;Parent=Msa1040170-mRNA-1
chr7_1 CDS 77523093 77523354 77523093 ID=Msa1040170-mRNA-1:cds;Parent=Msa1040170-mRNA-1
chr7_1 CDS 77524292 77525759 77524292 ID=Msa1040170-mRNA-1:cds;Parent=Msa1040170-mRNA-1
chr7_1 CDS 77525866 77526052 77525866 ID=Msa1040170-mRNA-1:cds;Parent=Msa1040170-mRNA-1
chr7_1 three_prime_UTR 77526053 77527324 77526053 ID=Msa1040170-mRNA-1:three_prime_utr;Parent=Msa1040170-mRNA-1
Gene Sequence

>Msa1040170

ATGGGCGGAGGTGGAGCGACAACTAACGCGGAGGCGCAGTATACGACGGCGAAGATATCGGTATGGTGGGATATAGAAAACTGTCATGTTCCTAAAGGCTCCGATCCACATGCAATTGCGCAGAATATCAGTTCAGCACTTGTTCGTATGAACTATTGTGGTCCCGTTTCCATCTCCGCCTACGGTGACACCACTCGTATACCTGCGTCTGTACAGCACGCGCTTTCTAGCACCGGAATTTCACTTAATCATGTTCCCGCCGGTGTGAAAGATGCAAGCGATAAGAAAATCCTTGTCGACATGCTGTTCTGGGCAGTGGACAACCCTGCACCTGCGAATTATTTATTGATTTCGGGTGATCGAGATTTTTCTAATGCCCTCCATCAACTGCGAATGAGGAGGTATAATATTCTTCTCGCACAACCTCAAAAAGCATCTGCACCACTAGTTGCAGCAGCTAAGAGTGTATGGCTTTGGACTACTCTCTTAGCTGGAGGACCTCCACTAACCAGTGGTGATACACAACAACTCAGTAATAGTAGCTTCTTACCGTCTTCTGAAACTATACAAGTTCCTGTCTCAAATGCTGCTCAGACACAGCAACAGGGGGGTCCCTATTCTGAAATTCATGCTGGAAATTCAAATGTTCAAAACGGAGGAAGGGGATTTGATTCTAGATATCAGGGTAGACCAACTTGGAGAAACCCGAGTCAACCAAATGGACCGAAAGCCATGAATCCACCCCCAGTTGGACTTCAAGATAACCGTAATAATGTAAACAATTATCGACCTGGCAACTATAATCCAAATGTTCCTCAAAGTGGATCAACCACAAACTTTGAGCGCGCCAATTCTGATCCATTATGGAGCAATAATGGTAATCAACAAGGAAATCATCAAAATCAACAGGGAAATCATCAAAATCAACAGGGGAATCATCAAAATCCATATTCCCAGCCATTAAGACCAAACGGTTTTCCATTGCAACCTCCTTTTGCACCTAGTAATTCATATTCTCCAAATTCCCATACTTTTGCAACTACACCGGTGCCACCTAGGACTGTTGGCAACAATTTCAGTACAGGATCACCTAGAACTGTGCCAGATATTGGCAATCTGAACATATCTGGTTATCCCAATAATGGTCATAACCCCCGCACTGTTCCGCAACGGAGTGGAGATTTGAAACCGAATCCTAAGAGTAGTGCTCCACTTCCGGTAAGATCAACGAATGAACAAAATGGACATATGGTGCATAGCAGTACCACTCAAGGCTATCCACATGGTCCAGAATATCAACCTACACACTCGACAGCAATGGGTAATAATAAACTTCCCTCTAATGGTAAGTGGGGATCTTCAGGTTGTCCTAAACCTTCTGAATATGTACAAGGCCTTATAGGTGTTGTTTTACTTGCCCTGAACTCACTAAAAAATGCCAAGATGATGCCAACTGAGAAGAATATAACTGATAGCATCCGTTATGGAGATCCCAAGCATCGCAACACCGATGTTAAGAAAGCTCTGGAGAGTGCTATGGAGCAGCAGATGGTGGTAAAACAAAATTTAGGTGCTTTAACGCTGTATGTTGGTAAGAATGACAAACTCTGGAAGTGTGTAAATCCCTTAGGTGGAAATCCTAAACAGCACTCCAAAGAAATTTGGGACGAAATTCAAAATTTTCTAACAACCCCTGCTGGTAGATCGGCAATAATGGATACACAGTGCAAGTATGAAGCAGGTATTGTGATAAAGAGCATGTGTTTTAAAGATCTTGCTTTGGGCGATGTCCTTCAGATATTGAACATGGTGATAACCCATAAAAAATGGATAATTCATCAGCAGTCTGGCTGGCAACCACTCATCCTTACTCTTCCCGAGTCAAACCCCGATTCAGGGGTGACTTCTGACGCATAG
Protein sequence

>Msa1040170

MGGGGATTNAEAQYTTAKISVWWDIENCHVPKGSDPHAIAQNISSALVRMNYCGPVSISAYGDTTRIPASVQHALSSTGISLNHVPAGVKDASDKKILVDMLFWAVDNPAPANYLLISGDRDFSNALHQLRMRRYNILLAQPQKASAPLVAAAKSVWLWTTLLAGGPPLTSGDTQQLSNSSFLPSSETIQVPVSNAAQTQQQGGPYSEIHAGNSNVQNGGRGFDSRYQGRPTWRNPSQPNGPKAMNPPPVGLQDNRNNVNNYRPGNYNPNVPQSGSTTNFERANSDPLWSNNGNQQGNHQNQQGNHQNQQGNHQNPYSQPLRPNGFPLQPPFAPSNSYSPNSHTFATTPVPPRTVGNNFSTGSPRTVPDIGNLNISGYPNNGHNPRTVPQRSGDLKPNPKSSAPLPVRSTNEQNGHMVHSSTTQGYPHGPEYQPTHSTAMGNNKLPSNGKWGSSGCPKPSEYVQGLIGVVLLALNSLKNAKMMPTEKNITDSIRYGDPKHRNTDVKKALESAMEQQMVVKQNLGALTLYVGKNDKLWKCVNPLGGNPKQHSKEIWDEIQNFLTTPAGRSAIMDTQCKYEAGIVIKSMCFKDLALGDVLQILNMVITHKKWIIHQQSGWQPLILTLPESNPDSGVTSDA*