AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1340020


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340020 MtrunA17_Chr1g0210221 97.357 227 6 0 1 227 1 227 3.72e-160 442
Msa1340020 MtrunA17_Chr7g0249231 42.273 220 114 1 4 223 72 278 2.11e-50 165
Msa1340020 MtrunA17_Chr1g0169451 40.000 225 113 6 7 223 151 361 8.73e-37 132
Msa1340020 MtrunA17_Chr5g0397071 32.883 222 123 4 7 219 138 342 1.59e-23 96.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1340020 AT1G25520.1 76.419 229 53 1 1 228 1 229 1.04e-115 330
Msa1340020 AT1G68650.1 75.439 228 55 1 1 228 1 227 6.22e-114 325
Msa1340020 AT5G36290.1 40.625 224 115 2 3 223 80 288 1.79e-48 161
Msa1340020 AT5G36290.2 40.625 224 115 2 3 223 80 288 1.79e-48 161
Msa1340020 AT4G13590.2 39.732 224 115 5 7 223 145 355 3.66e-39 139
Msa1340020 AT4G13590.1 39.732 224 115 5 7 223 145 355 4.12e-39 138
Msa1340020 AT1G64150.1 32.766 235 117 4 1 219 152 361 6.80e-24 98.2

Find 167 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCCTACATTAATTAAATT+TGG 0.066790 tig0003649:-6132 Msa1340020:intergenic
TATATATGATATTCAATTTA+TGG 0.143029 tig0003649:+6911 Msa1340020:three_prime_UTR
TAAACCATAGACTCTTTAAA+AGG 0.225221 tig0003649:-6077 Msa1340020:intergenic
CGAATCATGCAAACCTAATC+TGG 0.234432 tig0003649:+7149 Msa1340020:three_prime_UTR
TCCTTGAAAGAGGCTATATT+TGG 0.236172 tig0003649:+4101 Msa1340020:CDS
TTTCTCTCCCATCTTGTTAC+AGG 0.249070 tig0003649:+4947 Msa1340020:CDS
CTTTACATTCTAAAGTGAAT+TGG 0.268811 tig0003649:-6713 Msa1340020:intergenic
GGTGGAAAGGCAAGCTCTTT+TGG 0.271380 tig0003649:-6027 Msa1340020:intergenic
TTGTGGTTGCAATACCTATA+TGG 0.276655 tig0003649:+6679 Msa1340020:three_prime_UTR
TTCTCTCTGTTCTTGTTGGT+TGG 0.281934 tig0003649:+3769 Msa1340020:CDS
TGTCTCAAAAGTTATATAAA+TGG 0.289019 tig0003649:+7732 Msa1340020:three_prime_UTR
AACCCATTTGGCGTGGTTCT+TGG 0.294089 tig0003649:+5226 Msa1340020:CDS
TGTACTTCTGCTGCTGTTAT+CGG 0.295744 tig0003649:+5537 Msa1340020:CDS
CACGTGAAAGTTAGCATAAA+AGG 0.298896 tig0003649:+6277 Msa1340020:three_prime_UTR
AAAAGAATGCTCACCAGATT+TGG 0.301865 tig0003649:-3798 Msa1340020:intergenic
AATATCATATATACCATATA+GGG 0.302899 tig0003649:-6901 Msa1340020:intergenic
ATTACGACGTTCTTATTCTT+CGG 0.306446 tig0003649:+4065 Msa1340020:CDS
TTCCTACATTAATTAAATTT+GGG 0.308143 tig0003649:-6131 Msa1340020:intergenic
CAAGATTGGGGTGAGGTAGA+AGG 0.310224 tig0003649:+6527 Msa1340020:three_prime_UTR
ACAATTCTCTCTGTTCTTGT+TGG 0.313902 tig0003649:+3765 Msa1340020:CDS
ACATTTGATTTGTTAACTAA+TGG 0.316243 tig0003649:-6749 Msa1340020:intergenic
TTGTGTGACATGTCATCTTA+TGG 0.318729 tig0003649:-7126 Msa1340020:intergenic
TTACACTTTAGTCACTTTAG+AGG 0.321690 tig0003649:+6869 Msa1340020:intron
GAGGATTCAAATCCCCTATA+TGG 0.334626 tig0003649:+6888 Msa1340020:three_prime_UTR
TGGTTGGGCTGCTCCAAATC+TGG 0.336034 tig0003649:+3785 Msa1340020:CDS
TGGTTCGTTCAACCCTTAAC+TGG 0.340621 tig0003649:+2786 Msa1340020:five_prime_UTR
GTGTGAATTGTTACCAGTTA+AGG 0.342140 tig0003649:-2799 Msa1340020:intergenic
CCACGACGCCTTGTCTTAAC+AGG 0.342518 tig0003649:+3577 Msa1340020:CDS
GAATATCATATATACCATAT+AGG 0.345054 tig0003649:-6902 Msa1340020:intergenic
TCTCTCTGTTCTTGTTGGTT+GGG 0.349163 tig0003649:+3770 Msa1340020:CDS
TTGCAGTAACGGATTCTCTA+TGG 0.349576 tig0003649:+6185 Msa1340020:three_prime_UTR
AATCAAAGCAAATTTATGAT+AGG 0.351747 tig0003649:-7431 Msa1340020:intergenic
GGAAGTAATAAAACAAGATT+GGG 0.356011 tig0003649:+6514 Msa1340020:three_prime_UTR
CTTCTGTCAATCTCACTTGC+AGG 0.356511 tig0003649:-7103 Msa1340020:intergenic
ATTTGGCAGGTTGGACTCTC+AGG 0.356838 tig0003649:+5854 Msa1340020:intron
AAATGCCATGCTACTTAAGT+TGG 0.363284 tig0003649:-7024 Msa1340020:intergenic
TTACGACGTTCTTATTCTTC+GGG 0.364759 tig0003649:+4066 Msa1340020:CDS
AATTAATGTAGGAAGTTGAT+TGG 0.364857 tig0003649:+6140 Msa1340020:three_prime_UTR
GAATTTCCAATGCTTATTGC+TGG 0.370263 tig0003649:+6364 Msa1340020:three_prime_UTR
GGCTTGATGTTGGGGACATC+GGG 0.375158 tig0003649:-6957 Msa1340020:intergenic
TGCAATGGAGATAATTAGAT+TGG 0.377252 tig0003649:+7203 Msa1340020:three_prime_UTR
GCAAGGGATGGCTTGATGTT+GGG 0.381808 tig0003649:-6966 Msa1340020:intergenic
AAGATTGGGGTGAGGTAGAA+GGG 0.385206 tig0003649:+6528 Msa1340020:three_prime_UTR
ATTGTAATTAGGACAAAGAT+TGG 0.389163 tig0003649:+4348 Msa1340020:intron
TATTCTTCGGGTTTGGACTT+TGG 0.392999 tig0003649:+4078 Msa1340020:CDS
AGAGCTTGCCTTTCCACCTT+GGG 0.393106 tig0003649:+6032 Msa1340020:three_prime_UTR
CCTCCAAGAACCACGCCAAA+TGG 0.394458 tig0003649:-5229 Msa1340020:intergenic
GGTCACAATGCAAGAGTATT+GGG 0.394608 tig0003649:-6611 Msa1340020:intergenic
TTTACATTCTAAAGTGAATT+GGG 0.403310 tig0003649:-6712 Msa1340020:intergenic
ACGTTCTTATTCTTCGGGTT+TGG 0.403780 tig0003649:+4071 Msa1340020:CDS
AATGACCCTGCCTGGGTTGT+AGG 0.407490 tig0003649:+6493 Msa1340020:three_prime_UTR
CGAGTGGATAGTGCAAGTTT+TGG 0.411610 tig0003649:-7496 Msa1340020:intergenic
AGGAAGTAATAAAACAAGAT+TGG 0.418084 tig0003649:+6513 Msa1340020:three_prime_UTR
GGCTGAAGTTGAAGCTGAAC+TGG 0.424673 tig0003649:+4258 Msa1340020:CDS
CCATTGCAAGGAAAAGAGTA+TGG 0.424791 tig0003649:-7188 Msa1340020:intergenic
TCCAAATATAGCCTCTTTCA+AGG 0.428412 tig0003649:-4102 Msa1340020:intergenic
AAACCAAGTCTACCCAGATT+AGG 0.431568 tig0003649:-7162 Msa1340020:intergenic
TGGCTTGATGTTGGGGACAT+CGG 0.431889 tig0003649:-6958 Msa1340020:intergenic
GAGATCACAAAAGAATTTGT+TGG 0.434053 tig0003649:+7266 Msa1340020:three_prime_UTR
TGTGAATTGTTACCAGTTAA+GGG 0.434221 tig0003649:-2798 Msa1340020:intergenic
AGCTACAAAAGATACCAAAA+AGG 0.435268 tig0003649:+4385 Msa1340020:CDS
CTTGTTACAGTGGTTGAGAT+TGG 0.435916 tig0003649:+6001 Msa1340020:three_prime_UTR
GCTGCAGATGAAAACCCATT+TGG 0.436487 tig0003649:+5214 Msa1340020:CDS
TCAATTTATGGAAATCTTAG+TGG 0.443978 tig0003649:+6923 Msa1340020:three_prime_UTR
TTATGCAGATCTCTCGTAGT+TGG 0.455915 tig0003649:+4033 Msa1340020:intron
TCTAAAGTGAATTGGGAAGT+TGG 0.458090 tig0003649:-6705 Msa1340020:intergenic
AATGATGAAGTCTATGCTAT+TGG 0.459214 tig0003649:+5927 Msa1340020:exon
CAATTTATGGAAATCTTAGT+GGG 0.461923 tig0003649:+6924 Msa1340020:three_prime_UTR
TGTGGTTGCAATACCTATAT+GGG 0.463329 tig0003649:+6680 Msa1340020:three_prime_UTR
TCTCACTTGCAGGATCTACT+TGG 0.465689 tig0003649:-7093 Msa1340020:intergenic
AAGAGCTTGCCTTTCCACCT+TGG 0.467866 tig0003649:+6031 Msa1340020:three_prime_UTR
GTGTACATCTAGGCTCTGTT+TGG 0.469439 tig0003649:+7822 Msa1340020:three_prime_UTR
TGGGAAGTTGGATCCCATAT+AGG 0.469866 tig0003649:-6693 Msa1340020:intergenic
TATGCAGATCTCTCGTAGTT+GGG 0.473253 tig0003649:+4034 Msa1340020:intron
TTGAATCTGTCACAACATAC+AGG 0.474290 tig0003649:-6646 Msa1340020:intergenic
AAACCATAGACTCTTTAAAA+GGG 0.476907 tig0003649:-6076 Msa1340020:intergenic
CGACTGAAGAAAGGAATGAT+TGG 0.477906 tig0003649:-5904 Msa1340020:intergenic
CCATTTGGCGTGGTTCTTGG+AGG 0.480629 tig0003649:+5229 Msa1340020:CDS
ACTGCAAGTACGTGTTGAAA+AGG 0.483032 tig0003649:-6169 Msa1340020:intergenic
TTCATCTGCAGCTAAACCTA+TGG 0.483168 tig0003649:-5203 Msa1340020:intergenic
ATTGAGAGAGGAAGATAAAG+AGG 0.483256 tig0003649:-6325 Msa1340020:intergenic
ACTGTGAAAATGACCCTGCC+TGG 0.483337 tig0003649:+6485 Msa1340020:three_prime_UTR
AGCAAGGGATGGCTTGATGT+TGG 0.485588 tig0003649:-6967 Msa1340020:intergenic
ATTTATTACCTGTAACAAGA+TGG 0.486365 tig0003649:-4955 Msa1340020:intergenic
CATTTGGCGTGGTTCTTGGA+GGG 0.488586 tig0003649:+5230 Msa1340020:CDS
TGCTCATTCAAATCTACGAC+AGG 0.490494 tig0003649:-7533 Msa1340020:intergenic
AATGCCATGCTACTTAAGTT+GGG 0.490985 tig0003649:-7023 Msa1340020:intergenic
TTTGTTCAGTTGGCTACCAT+AGG 0.495409 tig0003649:+5187 Msa1340020:intron
TGGACTTTGGTCCTTGAAAG+AGG 0.497549 tig0003649:+4091 Msa1340020:CDS
AAAACCAAGCTTGTTTGTAT+GGG 0.498552 tig0003649:+6555 Msa1340020:three_prime_UTR
CTCCAAGAACCACGCCAAAT+GGG 0.499798 tig0003649:-5228 Msa1340020:intergenic
ATTCCACCAGCAATAAGCAT+TGG 0.500025 tig0003649:-6370 Msa1340020:intergenic
AAATATGAGCTCAATTGTTC+AGG 0.500477 tig0003649:+2875 Msa1340020:exon
TTTATTACCTGTAACAAGAT+GGG 0.502150 tig0003649:-4954 Msa1340020:intergenic
GAATTTGTTGGTGACTCAGA+TGG 0.502464 tig0003649:+7278 Msa1340020:three_prime_UTR
CAGTTAACTTGTGTACATCT+AGG 0.503622 tig0003649:+7812 Msa1340020:three_prime_UTR
ATGGAGATAATTAGATTGGA+TGG 0.505199 tig0003649:+7207 Msa1340020:three_prime_UTR
TATCCACTCGCTCTAATCTC+AGG 0.505318 tig0003649:+7509 Msa1340020:three_prime_UTR
GGACAGGGAATCAGAGGAGT+TGG 0.506438 tig0003649:+4237 Msa1340020:intron
AGGTCACAATGCAAGAGTAT+TGG 0.509695 tig0003649:-6612 Msa1340020:intergenic
CAAGGGATGGCTTGATGTTG+GGG 0.511192 tig0003649:-6965 Msa1340020:intergenic
TCAACACGTACTTGCAGTAA+CGG 0.514939 tig0003649:+6174 Msa1340020:three_prime_UTR
TTCATCATTCGACTGAAGAA+AGG 0.517530 tig0003649:-5913 Msa1340020:intergenic
CTGTTAAGACAAGGCGTCGT+GGG 0.520280 tig0003649:-3576 Msa1340020:intergenic
TTTCTAAGCTACTTGAGGGT+AGG 0.524668 tig0003649:-7407 Msa1340020:intergenic
AAACCTAATCTGGGTAGACT+TGG 0.526015 tig0003649:+7159 Msa1340020:three_prime_UTR
TAGGTGAAGTGGTGAACACT+TGG 0.528491 tig0003649:-7388 Msa1340020:intergenic
AAAGAGGCTATATTTGGAGA+AGG 0.530172 tig0003649:+4107 Msa1340020:CDS
TTTCCAATGCTTATTGCTGG+TGG 0.533139 tig0003649:+6367 Msa1340020:three_prime_UTR
TTACTTCCTACAACCCAGGC+AGG 0.536764 tig0003649:-6499 Msa1340020:intergenic
AAGAGGCTATATTTGGAGAA+GGG 0.538449 tig0003649:+4108 Msa1340020:CDS
TAGTCCTTATACACCATCCC+AGG 0.540962 tig0003649:-6454 Msa1340020:intergenic
TTGGATAGATTAAGTCAGGT+GGG 0.542073 tig0003649:-7477 Msa1340020:intergenic
TGCAGTAACGGATTCTCTAT+GGG 0.542097 tig0003649:+6186 Msa1340020:three_prime_UTR
AGATTGGGGTGAGGTAGAAG+GGG 0.542993 tig0003649:+6529 Msa1340020:three_prime_UTR
GACCCAAATTTAATTAATGT+AGG 0.546688 tig0003649:+6129 Msa1340020:three_prime_UTR
AGCTTTGACCCAAGGTGGAA+AGG 0.549201 tig0003649:-6040 None:intergenic
AAGATAAAGAGGTTAAGTGT+AGG 0.549712 tig0003649:-6314 None:intergenic
CTTAAGTTGGGCTCCAGTGA+AGG 0.551044 tig0003649:-7011 None:intergenic
TAATCATATCAATTCAGTGT+TGG 0.551555 tig0003649:+2766 None:intergenic
ACAACCCATACAAACAAGCT+TGG 0.553522 tig0003649:-6559 Msa1340020:intergenic
AGCAAACATGCTTGTTACAG+TGG 0.556245 tig0003649:+5991 Msa1340020:three_prime_UTR
CTACTTGAGGGTAGGTGAAG+TGG 0.558672 tig0003649:-7399 Msa1340020:intergenic
TGAATGGGGTGACAAGAGCC+AGG 0.563011 tig0003649:+5078 Msa1340020:CDS
GTTGGGCTCCAGTGAAGGAA+AGG 0.563774 tig0003649:-7006 Msa1340020:intergenic
ATCTAATTATCTCCATTGCA+AGG 0.567163 tig0003649:-7200 Msa1340020:intergenic
TTAAGTGTAGGCACATGGAA+TGG 0.568804 tig0003649:-6302 Msa1340020:intergenic
TTTGGATAGATTAAGTCAGG+TGG 0.571686 tig0003649:-7478 Msa1340020:intergenic
TTTGATGGACAGGGAATCAG+AGG 0.572662 tig0003649:+4231 Msa1340020:intron
GAATCATGCAAACCTAATCT+GGG 0.572828 tig0003649:+7150 Msa1340020:three_prime_UTR
ATGGTGTATAAGGACTAAGT+TGG 0.576005 tig0003649:+6460 Msa1340020:three_prime_UTR
TAATTAGGACAAAGATTGGA+AGG 0.578900 tig0003649:+4352 Msa1340020:intron
TTATGCAAGCAAGCAAGGGA+TGG 0.585475 tig0003649:-6978 Msa1340020:intergenic
ACTTCTGCTGCTGTTATCGG+AGG 0.588680 tig0003649:+5540 Msa1340020:CDS
GATCTCAGAGAGAACGGTCA+TGG 0.590501 tig0003649:-3012 Msa1340020:intergenic
TTTATTACTTCCTACAACCC+AGG 0.590706 tig0003649:-6503 Msa1340020:intergenic
ATGACCGTTCTCTCTGAGAT+CGG 0.592001 tig0003649:+3014 Msa1340020:CDS
CTGTGAAAATGACCCTGCCT+GGG 0.596629 tig0003649:+6486 Msa1340020:three_prime_UTR
CCTGTTAAGACAAGGCGTCG+TGG 0.599776 tig0003649:-3577 Msa1340020:intergenic
AGAATGAAAGCTTTGACCCA+AGG 0.600986 tig0003649:-6048 Msa1340020:intergenic
AATCATAATTCAAATTGTCA+AGG 0.608632 tig0003649:-7355 Msa1340020:intergenic
TCACAACATACAGGCATGGA+CGG 0.609913 tig0003649:-6637 Msa1340020:intergenic
CGAGGCAACCTGTTAAGACA+AGG 0.611382 tig0003649:-3585 Msa1340020:intergenic
ATGAAAGCTTTGACCCAAGG+TGG 0.611430 tig0003649:-6045 Msa1340020:intergenic
TGTTAGAGTATTGTCTACGA+GGG 0.612737 tig0003649:-7791 Msa1340020:intergenic
GGGCCTGAGATTAGAGCGAG+TGG 0.612744 tig0003649:-7512 Msa1340020:intergenic
ATCACCGATCTCAGAGAGAA+CGG 0.615665 tig0003649:-3018 Msa1340020:intergenic
TGGCAGGTTGGACTCTCAGG+TGG 0.615800 tig0003649:+5857 Msa1340020:intron
ACATACAGGCATGGACGGAA+AGG 0.617790 tig0003649:-6632 Msa1340020:intergenic
AATAAAACAAGATTGGGGTG+AGG 0.618298 tig0003649:+6520 Msa1340020:three_prime_UTR
CTGTTAGAGTATTGTCTACG+AGG 0.620288 tig0003649:-7792 Msa1340020:intergenic
AGAGGTTAAGTGTAGGCACA+TGG 0.620341 tig0003649:-6307 Msa1340020:intergenic
CTTCTGCTGCTGTTATCGGA+GGG 0.621384 tig0003649:+5541 Msa1340020:CDS
GGAGCCCAACTTAAGTAGCA+TGG 0.625775 tig0003649:+7019 Msa1340020:three_prime_UTR
AGTCCTTATACACCATCCCA+GGG 0.627247 tig0003649:-6453 Msa1340020:intergenic
TACTTCCTACAACCCAGGCA+GGG 0.629717 tig0003649:-6498 Msa1340020:intergenic
ATATCATATATACCATATAG+GGG 0.639416 tig0003649:-6900 Msa1340020:intergenic
AGATGAAAACCCATTTGGCG+TGG 0.640914 tig0003649:+5219 Msa1340020:CDS
TCTGTCACAACATACAGGCA+TGG 0.650709 tig0003649:-6641 Msa1340020:intergenic
AATTTATGGAAATCTTAGTG+GGG 0.653113 tig0003649:+6925 Msa1340020:three_prime_UTR
ATGCATCAATAGATTGAGAG+AGG 0.653137 tig0003649:-6337 Msa1340020:intergenic
GAAGTAATAAAACAAGATTG+GGG 0.671838 tig0003649:+6515 Msa1340020:three_prime_UTR
TCCTTATACACCATCCCAGG+GGG 0.685373 tig0003649:-6451 Msa1340010:intergenic
GTCCTTATACACCATCCCAG+GGG 0.692552 tig0003649:-6452 Msa1340010:intergenic
GTTAGAGTATTGTCTACGAG+GGG 0.693599 tig0003649:-7790 Msa1340010:intergenic
GCTCATTCAAATCTACGACA+GGG 0.711540 tig0003649:-7532 Msa1340010:intergenic
ATCTTACTATCAAAGCTGCG+AGG 0.717694 tig0003649:-3603 Msa1340010:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATGATATTCAATTTA+TGG + tig0003649:6911-6930 Msa1340020:three_prime_UTR 10.0%
!!! TATTCATTTTGATTTTGATT+AGG + tig0003649:2971-2990 Msa1340020:intron 15.0%
!!! ATTCATTTTGATTTTGATTA+GGG + tig0003649:2972-2991 Msa1340020:intron 15.0%
!!! CTATAATTTGAAATTTTACA+AGG - tig0003649:3739-3758 Msa1340020:intergenic 15.0%
!! CTTGTAAAATTTCAAATTAT+AGG + tig0003649:3737-3756 Msa1340020:intron 15.0%
!! TAACTTATTCATACTTTAAT+AGG + tig0003649:4690-4709 Msa1340020:intron 15.0%
!!! TTTCATTTTCTTGTATATAT+TGG + tig0003649:5122-5141 Msa1340020:intron 15.0%
!! AATTATTAGTTGTTTATTAC+AGG + tig0003649:5502-5521 Msa1340020:intron 15.0%
!! ATTATTAGTTGTTTATTACA+GGG + tig0003649:5503-5522 Msa1340020:intron 15.0%
!! GAAATTACTTGAATTAAAAA+AGG - tig0003649:5671-5690 Msa1340020:intergenic 15.0%
!! TTCCTACATTAATTAAATTT+GGG - tig0003649:6134-6153 Msa1340020:intergenic 15.0%
!! AATATCATATATACCATATA+GGG - tig0003649:6904-6923 Msa1340020:intergenic 15.0%
!! ACAAAAATTGTGAAAAAAAA+GGG - tig0003649:7614-7633 Msa1340020:intergenic 15.0%
!!! TAATACAACTCTTTTAATTA+AGG + tig0003649:7764-7783 Msa1340020:three_prime_UTR 15.0%
!! AAACAGAAAATGAAAAAATG+AGG - tig0003649:2925-2944 Msa1340020:intergenic 20.0%
!! ATTCAGTTACAATTCATTAT+TGG + tig0003649:3246-3265 Msa1340020:intron 20.0%
!! GAGTTTCAATTTCAAATATT+AGG + tig0003649:3303-3322 Msa1340020:intron 20.0%
!! AGATAACAAATATATCAAAC+AGG + tig0003649:3457-3476 Msa1340020:intron 20.0%
!! AAAAACAAAGATAACAAATC+TGG - tig0003649:3687-3706 Msa1340020:intergenic 20.0%
!!! TATCTTTGTTTTTAAAGTAG+TGG + tig0003649:3694-3713 Msa1340020:intron 20.0%
!! ATCAAAGAAAAAAGATAATG+CGG - tig0003649:3987-4006 Msa1340020:intergenic 20.0%
!! AATAGCATGAAAATCAATAA+GGG - tig0003649:4015-4034 Msa1340020:intergenic 20.0%
!! TAATAGCATGAAAATCAATA+AGG - tig0003649:4016-4035 Msa1340020:intergenic 20.0%
!! TTCATTAGAAATGTATAATC+AGG - tig0003649:4160-4179 Msa1340020:intergenic 20.0%
!! TTCGTAATAAATTCATTTGA+TGG + tig0003649:4216-4235 Msa1340020:intron 20.0%
!!! AGTAGACAAAATATTTTCTA+TGG - tig0003649:4556-4575 Msa1340020:intergenic 20.0%
!! CAAATATATCTTTAACCATT+TGG - tig0003649:4597-4616 Msa1340020:intergenic 20.0%
!! CAAATGGTTAAAGATATATT+TGG + tig0003649:4595-4614 Msa1340020:intron 20.0%
!! TTTGACAAATAATGTGTATT+AGG - tig0003649:4872-4891 Msa1340020:intergenic 20.0%
!!! CATTATTTGTCAAATTTTTC+AGG + tig0003649:4878-4897 Msa1340020:intron 20.0%
!!! TAACTTTTTTTTTGTTCAGT+TGG + tig0003649:5177-5196 Msa1340020:intron 20.0%
!! TTATTAGTTGTTTATTACAG+GGG + tig0003649:5504-5523 Msa1340020:intron 20.0%
!! TTAAAAAAGGTGGAAAAAAA+AGG - tig0003649:5658-5677 Msa1340020:intergenic 20.0%
!! ATTACTTGAATTAAAAAAGG+TGG - tig0003649:5668-5687 Msa1340020:intergenic 20.0%
!! AGTAAATGAAAAAGAAGTAA+TGG + tig0003649:5714-5733 Msa1340020:intron 20.0%
!!! GGAATTCTTTTTATTGTTTT+TGG + tig0003649:5878-5897 Msa1340020:CDS 20.0%
!! CTTCCTACATTAATTAAATT+TGG - tig0003649:6135-6154 Msa1340020:intergenic 20.0%
!!! TTTACATTCTAAAGTGAATT+GGG - tig0003649:6715-6734 Msa1340020:intergenic 20.0%
!!! ACATTTGATTTGTTAACTAA+TGG - tig0003649:6752-6771 Msa1340020:intergenic 20.0%
!! ATATCATATATACCATATAG+GGG - tig0003649:6903-6922 Msa1340020:intergenic 20.0%
!! GAATATCATATATACCATAT+AGG - tig0003649:6905-6924 Msa1340020:intergenic 20.0%
!! AATCATAATTCAAATTGTCA+AGG - tig0003649:7358-7377 Msa1340020:intergenic 20.0%
!! AATCAAAGCAAATTTATGAT+AGG - tig0003649:7434-7453 Msa1340020:intergenic 20.0%
!! CACAAAAATTGTGAAAAAAA+AGG - tig0003649:7615-7634 Msa1340020:intergenic 20.0%
!! TGTCTCAAAAGTTATATAAA+TGG + tig0003649:7732-7751 Msa1340020:three_prime_UTR 20.0%
! AATGAGGTGAAATAATTGAT+AGG - tig0003649:2909-2928 Msa1340020:intergenic 25.0%
!!! TGAATAGTTATTGAGTTGAT+TGG - tig0003649:3180-3199 Msa1340020:intergenic 25.0%
! TGCATAATTCCTAAAATTGA+AGG + tig0003649:3349-3368 Msa1340020:intron 25.0%
! GCATAATTCCTAAAATTGAA+GGG + tig0003649:3350-3369 Msa1340020:intron 25.0%
! CATAATTCCTAAAATTGAAG+GGG + tig0003649:3351-3370 Msa1340020:intron 25.0%
! AACAAATATATCAAACAGGA+AGG + tig0003649:3461-3480 Msa1340020:intron 25.0%
! ACAAATATATCAAACAGGAA+GGG + tig0003649:3462-3481 Msa1340020:intron 25.0%
! TCAGCATGAGTATATATTAT+AGG + tig0003649:3940-3959 Msa1340020:intron 25.0%
! TCAAAGAAAAAAGATAATGC+GGG - tig0003649:3986-4005 Msa1340020:intergenic 25.0%
!! AATAAATTCATTTGATGGAC+AGG + tig0003649:4221-4240 Msa1340020:intron 25.0%
!! ATAAATTCATTTGATGGACA+GGG + tig0003649:4222-4241 Msa1340020:intron 25.0%
!!! GTTGGTTTTTCAACATTATT+TGG + tig0003649:4280-4299 Msa1340020:intron 25.0%
! TTGTCCTAATTACAATACAA+GGG - tig0003649:4344-4363 Msa1340020:intergenic 25.0%
! TTTGTCCTAATTACAATACA+AGG - tig0003649:4345-4364 Msa1340020:intergenic 25.0%
! ATTGTAATTAGGACAAAGAT+TGG + tig0003649:4348-4367 Msa1340020:intron 25.0%
!!! CAGGTATTATTTTACCTTTT+TGG - tig0003649:4402-4421 Msa1340020:intergenic 25.0%
! TGTGATATTTGATTACCAAA+TGG + tig0003649:4579-4598 Msa1340020:intron 25.0%
! ATGCCACAAAAAAACATAAA+CGG + tig0003649:4907-4926 Msa1340020:CDS 25.0%
! GAGAAAAACTGAGATAAAAA+TGG - tig0003649:4933-4952 Msa1340020:intergenic 25.0%
! TTTATTACCTGTAACAAGAT+GGG - tig0003649:4957-4976 Msa1340020:intergenic 25.0%
! ATTTATTACCTGTAACAAGA+TGG - tig0003649:4958-4977 Msa1340020:intergenic 25.0%
! GAATTCAGTTAAATATTGCA+TGG - tig0003649:4992-5011 Msa1340020:intergenic 25.0%
! AAGTGAAAAGGAATCAAATT+TGG - tig0003649:5024-5043 Msa1340020:intergenic 25.0%
!!! GCATTTTCTATCACTTTTTT+TGG + tig0003649:5055-5074 Msa1340020:CDS 25.0%
!!! TATCACTTTTTTTGGTGAAT+GGG + tig0003649:5063-5082 Msa1340020:CDS 25.0%
! GAAAATAGTCATAATCTTGA+AGG - tig0003649:5316-5335 Msa1340020:intergenic 25.0%
!! AGATTATGACTATTTTCCTT+TGG + tig0003649:5319-5338 Msa1340020:intron 25.0%
! TATTAGTTGTTTATTACAGG+GGG + tig0003649:5505-5524 Msa1340020:intron 25.0%
! AAAAAGGTGACAAAAACATA+TGG - tig0003649:5642-5661 Msa1340020:intergenic 25.0%
! AATAGATGCAAACAATTTCT+AGG + tig0003649:5749-5768 Msa1340020:intron 25.0%
! GGTAAAGATTAAGATAAGTA+TGG + tig0003649:5805-5824 Msa1340020:intron 25.0%
! AAATGTTGAATACAGCATTT+AGG - tig0003649:5838-5857 Msa1340020:intergenic 25.0%
! TAAATGCTGTATTCAACATT+TGG + tig0003649:5837-5856 Msa1340020:intron 25.0%
!! AAACCATAGACTCTTTAAAA+GGG - tig0003649:6079-6098 Msa1340020:intergenic 25.0%
! TAAACCATAGACTCTTTAAA+AGG - tig0003649:6080-6099 Msa1340020:intergenic 25.0%
! GACCCAAATTTAATTAATGT+AGG + tig0003649:6129-6148 Msa1340020:three_prime_UTR 25.0%
!! AATTAATGTAGGAAGTTGAT+TGG + tig0003649:6140-6159 Msa1340020:three_prime_UTR 25.0%
! AGGAAGTAATAAAACAAGAT+TGG + tig0003649:6513-6532 Msa1340020:three_prime_UTR 25.0%
! GGAAGTAATAAAACAAGATT+GGG + tig0003649:6514-6533 Msa1340020:three_prime_UTR 25.0%
! GAAGTAATAAAACAAGATTG+GGG + tig0003649:6515-6534 Msa1340020:three_prime_UTR 25.0%
!!! CTTTACATTCTAAAGTGAAT+TGG - tig0003649:6716-6735 Msa1340020:intergenic 25.0%
! TAAAGTGACTAAAGTGTAAA+GGG - tig0003649:6832-6851 Msa1340020:intergenic 25.0%
! TCAATTTATGGAAATCTTAG+TGG + tig0003649:6923-6942 Msa1340020:three_prime_UTR 25.0%
! CAATTTATGGAAATCTTAGT+GGG + tig0003649:6924-6943 Msa1340020:three_prime_UTR 25.0%
! AATTTATGGAAATCTTAGTG+GGG + tig0003649:6925-6944 Msa1340020:three_prime_UTR 25.0%
!!! GATGGATTTTTAGTTTAGAA+TGG + tig0003649:7296-7315 Msa1340020:three_prime_UTR 25.0%
! TCGTTTCTCTAATTAAAAAC+AGG - tig0003649:7580-7599 Msa1340020:intergenic 25.0%
TGTGAATTGTTACCAGTTAA+GGG - tig0003649:2801-2820 Msa1340020:intergenic 30.0%
AAATATGAGCTCAATTGTTC+AGG + tig0003649:2875-2894 Msa1340020:exon 30.0%
TTGAGGTGGGAAAATAAATA+AGG - tig0003649:3089-3108 Msa1340020:intergenic 30.0%
! ATTATCACCCCTTCAATTTT+AGG - tig0003649:3361-3380 Msa1340020:intergenic 30.0%
TGATGCTTATTTCAAGATAC+TGG + tig0003649:3543-3562 Msa1340020:intron 30.0%
CAAATCTGGAAAAGAAAGAA+AGG - tig0003649:3673-3692 Msa1340020:intergenic 30.0%
!! TGATGATTCTGAAGTTAAAC+CGG - tig0003649:3827-3846 Msa1340020:intergenic 30.0%
ATTACGACGTTCTTATTCTT+CGG + tig0003649:4065-4084 Msa1340020:CDS 30.0%
!! GTATAATCAGGTTGATATGA+GGG - tig0003649:4148-4167 Msa1340020:intergenic 30.0%
!! TGTATAATCAGGTTGATATG+AGG - tig0003649:4149-4168 Msa1340020:intergenic 30.0%
AACACCCTTGTATTGTAATT+AGG + tig0003649:4337-4356 Msa1340020:intron 30.0%
TAATTAGGACAAAGATTGGA+AGG + tig0003649:4352-4371 Msa1340020:intron 30.0%
AAAGATTGGAAGGCTAAAAA+TGG + tig0003649:4362-4381 Msa1340020:CDS 30.0%
AGCTACAAAAGATACCAAAA+AGG + tig0003649:4385-4404 Msa1340020:CDS 30.0%
CAGCACAGATTTAATTAAAC+AGG - tig0003649:4421-4440 Msa1340020:intergenic 30.0%
! AGTAGTGCAATTGAAGATTT+TGG - tig0003649:4747-4766 Msa1340020:intergenic 30.0%
!!! CTATCACTTTTTTTGGTGAA+TGG + tig0003649:5062-5081 Msa1340020:CDS 30.0%
!!! ATCACTTTTTTTGGTGAATG+GGG + tig0003649:5064-5083 Msa1340020:CDS 30.0%
TAAGAAATTTGTAGCACCTT+AGG - tig0003649:5470-5489 Msa1340020:intergenic 30.0%
TGCTACAAATTTCTTAGAAG+AGG + tig0003649:5474-5493 Msa1340020:intron 30.0%
! ATCTCAGATTTCTGAAAAAG+TGG + tig0003649:5575-5594 Msa1340020:CDS 30.0%
! AGAAGTAATGGAAAACTTGA+TGG + tig0003649:5726-5745 Msa1340020:intron 30.0%
ATTCTAATTTACCACACTAC+TGG + tig0003649:5784-5803 Msa1340020:intron 30.0%
AATGATGAAGTCTATGCTAT+TGG + tig0003649:5927-5946 Msa1340020:exon 30.0%
AAGATAAAGAGGTTAAGTGT+AGG - tig0003649:6317-6336 Msa1340020:intergenic 30.0%
!! TTTTAATTCATTATTCCCCC+TGG + tig0003649:6436-6455 Msa1340020:three_prime_UTR 30.0%
TTTAATTCATTATTCCCCCT+GGG + tig0003649:6437-6456 Msa1340020:three_prime_UTR 30.0%
! AAAAACCAAGCTTGTTTGTA+TGG + tig0003649:6554-6573 Msa1340020:three_prime_UTR 30.0%
! AAAACCAAGCTTGTTTGTAT+GGG + tig0003649:6555-6574 Msa1340020:three_prime_UTR 30.0%
! GATTCAAAAAGTGTAAGTTG+TGG + tig0003649:6662-6681 Msa1340020:three_prime_UTR 30.0%
! TTACACTTTAGTCACTTTAG+AGG + tig0003649:6833-6852 Msa1340020:intron 30.0%
AAAGTGACTAAAGTGTAAAG+GGG - tig0003649:6831-6850 Msa1340020:intergenic 30.0%
CTAAAGTGACTAAAGTGTAA+AGG - tig0003649:6833-6852 Msa1340020:intergenic 30.0%
! TTACACTTTAGTCACTTTAG+AGG + tig0003649:6833-6852 Msa1340020:intron 30.0%
! ATTTTTATGCAAGCAAGCAA+GGG - tig0003649:6985-7004 Msa1340020:intergenic 30.0%
ATCTAATTATCTCCATTGCA+AGG - tig0003649:7203-7222 Msa1340020:intergenic 30.0%
TGCAATGGAGATAATTAGAT+TGG + tig0003649:7203-7222 Msa1340020:three_prime_UTR 30.0%
ATGGAGATAATTAGATTGGA+TGG + tig0003649:7207-7226 Msa1340020:three_prime_UTR 30.0%
!!! AGTTTTGGATAGATTAAGTC+AGG - tig0003649:7484-7503 Msa1340020:intergenic 30.0%
AACAGGAAAAAGTCATACAA+TGG - tig0003649:7563-7582 Msa1340020:intergenic 30.0%
GTGTGAATTGTTACCAGTTA+AGG - tig0003649:2802-2821 Msa1340020:intergenic 35.0%
!!! TAAGACTTTTTTTGCAGCTG+CGG + tig0003649:3040-3059 Msa1340020:CDS 35.0%
ACAATTCTCTCTGTTCTTGT+TGG + tig0003649:3765-3784 Msa1340020:CDS 35.0%
AAAAGAATGCTCACCAGATT+TGG - tig0003649:3801-3820 Msa1340020:intergenic 35.0%
!!! TGGTGAGCATTCTTTTTTAC+CGG + tig0003649:3805-3824 Msa1340020:intron 35.0%
TTACGACGTTCTTATTCTTC+GGG + tig0003649:4066-4085 Msa1340020:CDS 35.0%
TCCTTGAAAGAGGCTATATT+TGG + tig0003649:4101-4120 Msa1340020:CDS 35.0%
TCCAAATATAGCCTCTTTCA+AGG - tig0003649:4105-4124 Msa1340020:intergenic 35.0%
AAAGAGGCTATATTTGGAGA+AGG + tig0003649:4107-4126 Msa1340020:CDS 35.0%
AAGAGGCTATATTTGGAGAA+GGG + tig0003649:4108-4127 Msa1340020:CDS 35.0%
TGAGATCAAAAGAGTGAACA+TGG - tig0003649:4462-4481 Msa1340020:intergenic 35.0%
! GTTCTGTTGTTGTAGTTCTA+AGG - tig0003649:4626-4645 Msa1340020:intergenic 35.0%
TAGGAACTTCAAATCTTGCA+AGG + tig0003649:4709-4728 Msa1340020:intron 35.0%
!!! TGGCCGTTTATGTTTTTTTG+TGG - tig0003649:4913-4932 Msa1340020:intergenic 35.0%
! GTTTTCTAACTATCCTTACC+TGG - tig0003649:5099-5118 Msa1340020:intergenic 35.0%
GTCAATGAAGAAACAAATGC+AGG - tig0003649:5348-5367 Msa1340020:intergenic 35.0%
TACACTCTTTCACATTTGCA+AGG - tig0003649:5404-5423 Msa1340020:intergenic 35.0%
AGAGTGTAGTGTTTGTTTAG+AGG + tig0003649:5416-5435 Msa1340020:intron 35.0%
ACAGATATGTCTTATGCCTA+AGG + tig0003649:5451-5470 Msa1340020:intron 35.0%
CTTAATCTTTACCAGTAGTG+TGG - tig0003649:5798-5817 Msa1340020:intergenic 35.0%
TTCATCATTCGACTGAAGAA+AGG - tig0003649:5916-5935 Msa1340020:intergenic 35.0%
!! TCACCCTTTTAAAGAGTCTA+TGG + tig0003649:6073-6092 Msa1340020:three_prime_UTR 35.0%
CACGTGAAAGTTAGCATAAA+AGG + tig0003649:6277-6296 Msa1340020:three_prime_UTR 35.0%
ATTGAGAGAGGAAGATAAAG+AGG - tig0003649:6328-6347 Msa1340020:intergenic 35.0%
ATGCATCAATAGATTGAGAG+AGG - tig0003649:6340-6359 Msa1340020:intergenic 35.0%
GAATTTCCAATGCTTATTGC+TGG + tig0003649:6364-6383 Msa1340020:three_prime_UTR 35.0%
ATGGTGTATAAGGACTAAGT+TGG + tig0003649:6460-6479 Msa1340020:three_prime_UTR 35.0%
TTTATTACTTCCTACAACCC+AGG - tig0003649:6506-6525 Msa1340020:intergenic 35.0%
AATAAAACAAGATTGGGGTG+AGG + tig0003649:6520-6539 Msa1340020:three_prime_UTR 35.0%
! GTGCTTGAATGCTTGATTTT+AGG + tig0003649:6580-6599 Msa1340020:three_prime_UTR 35.0%
TTGAATCTGTCACAACATAC+AGG - tig0003649:6649-6668 Msa1340020:intergenic 35.0%
TTGTGGTTGCAATACCTATA+TGG + tig0003649:6679-6698 Msa1340020:three_prime_UTR 35.0%
TGTGGTTGCAATACCTATAT+GGG + tig0003649:6680-6699 Msa1340020:three_prime_UTR 35.0%
! TCTAAAGTGAATTGGGAAGT+TGG - tig0003649:6708-6727 Msa1340020:intergenic 35.0%
! CATTTTTATGCAAGCAAGCA+AGG - tig0003649:6986-7005 Msa1340020:intergenic 35.0%
TAAAAATGCCTTTCCTTCAC+TGG + tig0003649:6998-7017 Msa1340020:three_prime_UTR 35.0%
! AATGCCATGCTACTTAAGTT+GGG - tig0003649:7026-7045 Msa1340020:intergenic 35.0%
! AAATGCCATGCTACTTAAGT+TGG - tig0003649:7027-7046 Msa1340020:intergenic 35.0%
TTGTGTGACATGTCATCTTA+TGG - tig0003649:7129-7148 Msa1340020:intergenic 35.0%
GAATCATGCAAACCTAATCT+GGG + tig0003649:7150-7169 Msa1340020:three_prime_UTR 35.0%
! AGGTTTTCTAAGCTACTTGA+GGG - tig0003649:7414-7433 Msa1340020:intergenic 35.0%
! TAGGTTTTCTAAGCTACTTG+AGG - tig0003649:7415-7434 Msa1340020:intergenic 35.0%
TTGGATAGATTAAGTCAGGT+GGG - tig0003649:7480-7499 Msa1340020:intergenic 35.0%
TTTGGATAGATTAAGTCAGG+TGG - tig0003649:7481-7500 Msa1340020:intergenic 35.0%
!! TGTTAGAGTATTGTCTACGA+GGG - tig0003649:7794-7813 Msa1340020:intergenic 35.0%
!! CAGTTAACTTGTGTACATCT+AGG + tig0003649:7812-7831 Msa1340020:three_prime_UTR 35.0%
TATCAAACAGGAAGGGCTAA+TGG + tig0003649:3469-3488 Msa1340020:intron 40.0%
ATCTTACTATCAAAGCTGCG+AGG - tig0003649:3606-3625 Msa1340020:intergenic 40.0%
TTCTCTCTGTTCTTGTTGGT+TGG + tig0003649:3769-3788 Msa1340020:CDS 40.0%
! TCTCTCTGTTCTTGTTGGTT+GGG + tig0003649:3770-3789 Msa1340020:CDS 40.0%
TGTTATCTTATCGTGACTCG+TGG + tig0003649:3880-3899 Msa1340020:intron 40.0%
TTATGCAGATCTCTCGTAGT+TGG + tig0003649:4033-4052 Msa1340020:intron 40.0%
TATGCAGATCTCTCGTAGTT+GGG + tig0003649:4034-4053 Msa1340020:intron 40.0%
! ACGTTCTTATTCTTCGGGTT+TGG + tig0003649:4071-4090 Msa1340020:CDS 40.0%
! TATTCTTCGGGTTTGGACTT+TGG + tig0003649:4078-4097 Msa1340020:CDS 40.0%
GATCAAAAGAGTGAACATGG+AGG - tig0003649:4459-4478 Msa1340020:intergenic 40.0%
TTTCTCTCCCATCTTGTTAC+AGG + tig0003649:4947-4966 Msa1340020:CDS 40.0%
GATAGAAAATGCCTGCAGAA+TGG - tig0003649:5047-5066 Msa1340020:intergenic 40.0%
TTTGTTCAGTTGGCTACCAT+AGG + tig0003649:5187-5206 Msa1340020:intron 40.0%
TTCATCTGCAGCTAAACCTA+TGG - tig0003649:5206-5225 Msa1340020:intergenic 40.0%
AAACAAATGCAGGCAACCAA+AGG - tig0003649:5338-5357 Msa1340020:intergenic 40.0%
TGTACTTCTGCTGCTGTTAT+CGG + tig0003649:5537-5556 Msa1340020:CDS 40.0%
TGCTGTATTCAACATTTGGC+AGG + tig0003649:5841-5860 Msa1340020:intron 40.0%
GTATTCAACATTTGGCAGGT+TGG + tig0003649:5845-5864 Msa1340020:intron 40.0%
CGACTGAAGAAAGGAATGAT+TGG - tig0003649:5907-5926 Msa1340020:intergenic 40.0%
! AGCAAACATGCTTGTTACAG+TGG + tig0003649:5991-6010 Msa1340020:three_prime_UTR 40.0%
CTTGTTACAGTGGTTGAGAT+TGG + tig0003649:6001-6020 Msa1340020:three_prime_UTR 40.0%
! AGAATGAAAGCTTTGACCCA+AGG - tig0003649:6051-6070 Msa1340020:intergenic 40.0%
ACTGCAAGTACGTGTTGAAA+AGG - tig0003649:6172-6191 Msa1340020:intergenic 40.0%
TCAACACGTACTTGCAGTAA+CGG + tig0003649:6174-6193 Msa1340020:three_prime_UTR 40.0%
!! TTGCAGTAACGGATTCTCTA+TGG + tig0003649:6185-6204 Msa1340020:three_prime_UTR 40.0%
!! TGCAGTAACGGATTCTCTAT+GGG + tig0003649:6186-6205 Msa1340020:three_prime_UTR 40.0%
! AAGAGAGTTTTCCCTTGACA+GGG + tig0003649:6238-6257 Msa1340020:three_prime_UTR 40.0%
TTAAGTGTAGGCACATGGAA+TGG - tig0003649:6305-6324 Msa1340020:intergenic 40.0%
TTTCCAATGCTTATTGCTGG+TGG + tig0003649:6367-6386 Msa1340020:three_prime_UTR 40.0%
ATTCCACCAGCAATAAGCAT+TGG - tig0003649:6373-6392 Msa1340020:intergenic 40.0%
ACAACCCATACAAACAAGCT+TGG - tig0003649:6562-6581 Msa1340020:intergenic 40.0%
!! GGTCACAATGCAAGAGTATT+GGG - tig0003649:6614-6633 Msa1340020:intergenic 40.0%
! AGGTCACAATGCAAGAGTAT+TGG - tig0003649:6615-6634 Msa1340020:intergenic 40.0%
GAGGATTCAAATCCCCTATA+TGG + tig0003649:6888-6907 Msa1340020:three_prime_UTR 40.0%
CGAATCATGCAAACCTAATC+TGG + tig0003649:7149-7168 Msa1340020:three_prime_UTR 40.0%
AAACCTAATCTGGGTAGACT+TGG + tig0003649:7159-7178 Msa1340020:three_prime_UTR 40.0%
AAACCAAGTCTACCCAGATT+AGG - tig0003649:7165-7184 Msa1340020:intergenic 40.0%
CCATTGCAAGGAAAAGAGTA+TGG - tig0003649:7191-7210 Msa1340020:intergenic 40.0%
! CCATACTCTTTTCCTTGCAA+TGG + tig0003649:7188-7207 Msa1340020:three_prime_UTR 40.0%
! TGGTGAACACTTGGATTTTG+AGG - tig0003649:7382-7401 Msa1340020:intergenic 40.0%
TTTCTAAGCTACTTGAGGGT+AGG - tig0003649:7410-7429 Msa1340020:intergenic 40.0%
GCTCATTCAAATCTACGACA+GGG - tig0003649:7535-7554 Msa1340020:intergenic 40.0%
TGCTCATTCAAATCTACGAC+AGG - tig0003649:7536-7555 Msa1340020:intergenic 40.0%
!! GTTAGAGTATTGTCTACGAG+GGG - tig0003649:7793-7812 Msa1340020:intergenic 40.0%
!! CTGTTAGAGTATTGTCTACG+AGG - tig0003649:7795-7814 Msa1340020:intergenic 40.0%
TGGTTCGTTCAACCCTTAAC+TGG + tig0003649:2786-2805 Msa1340020:five_prime_UTR 45.0%
!! ATGACCGTTCTCTCTGAGAT+CGG + tig0003649:3014-3033 Msa1340020:CDS 45.0%
ATCACCGATCTCAGAGAGAA+CGG - tig0003649:3021-3040 Msa1340020:intergenic 45.0%
AGAGTGTGATATCTGAGCTG+AGG - tig0003649:3116-3135 Msa1340020:intergenic 45.0%
TGGACTTTGGTCCTTGAAAG+AGG + tig0003649:4091-4110 Msa1340020:CDS 45.0%
! TTTGATGGACAGGGAATCAG+AGG + tig0003649:4231-4250 Msa1340020:intron 45.0%
GAAGTTGAAGCTGAACTGGT+TGG + tig0003649:4262-4281 Msa1340020:intron 45.0%
ATGACCGCACATCGTCTTAA+GGG - tig0003649:4511-4530 Msa1340020:intergenic 45.0%
TATGACCGCACATCGTCTTA+AGG - tig0003649:4512-4531 Msa1340020:intergenic 45.0%
CCTGCAGAATGGAAGTGAAA+AGG - tig0003649:5036-5055 Msa1340020:intergenic 45.0%
! CCTTTTCACTTCCATTCTGC+AGG + tig0003649:5033-5052 Msa1340020:intron 45.0%
GCTGCAGATGAAAACCCATT+TGG + tig0003649:5214-5233 Msa1340020:CDS 45.0%
AGATGAAAACCCATTTGGCG+TGG + tig0003649:5219-5238 Msa1340020:CDS 45.0%
TTGGAGGGATTCTGTGAGTT+TGG + tig0003649:5245-5264 Msa1340020:intron 45.0%
! ATGAAAGCTTTGACCCAAGG+TGG - tig0003649:6048-6067 Msa1340020:intergenic 45.0%
! GAAGAGAGTTTTCCCTTGAC+AGG + tig0003649:6237-6256 Msa1340020:three_prime_UTR 45.0%
! AGAGAGTTTTCCCTTGACAG+GGG + tig0003649:6239-6258 Msa1340020:three_prime_UTR 45.0%
TTTCAACAACCCCCTGTCAA+GGG - tig0003649:6252-6271 Msa1340020:intergenic 45.0%
ATTTCAACAACCCCCTGTCA+AGG - tig0003649:6253-6272 Msa1340020:intergenic 45.0%
AGAGGTTAAGTGTAGGCACA+TGG - tig0003649:6310-6329 Msa1340020:intergenic 45.0%
ATTCATTATTCCCCCTGGGA+TGG + tig0003649:6441-6460 Msa1340020:three_prime_UTR 45.0%
AGTCCTTATACACCATCCCA+GGG - tig0003649:6456-6475 Msa1340020:intergenic 45.0%
TAGTCCTTATACACCATCCC+AGG - tig0003649:6457-6476 Msa1340020:intergenic 45.0%
AAGATTGGGGTGAGGTAGAA+GGG + tig0003649:6528-6547 Msa1340020:three_prime_UTR 45.0%
TCACAACATACAGGCATGGA+CGG - tig0003649:6640-6659 Msa1340020:intergenic 45.0%
TCTGTCACAACATACAGGCA+TGG - tig0003649:6644-6663 Msa1340020:intergenic 45.0%
TGGGAAGTTGGATCCCATAT+AGG - tig0003649:6696-6715 Msa1340020:intergenic 45.0%
TTATGCAAGCAAGCAAGGGA+TGG - tig0003649:6981-7000 Msa1340020:intergenic 45.0%
TCTCACTTGCAGGATCTACT+TGG - tig0003649:7096-7115 Msa1340020:intergenic 45.0%
CTTCTGTCAATCTCACTTGC+AGG - tig0003649:7106-7125 Msa1340020:intergenic 45.0%
TAGGTGAAGTGGTGAACACT+TGG - tig0003649:7391-7410 Msa1340020:intergenic 45.0%
! CGAGTGGATAGTGCAAGTTT+TGG - tig0003649:7499-7518 Msa1340020:intergenic 45.0%
TATCCACTCGCTCTAATCTC+AGG + tig0003649:7509-7528 Msa1340020:three_prime_UTR 45.0%
GTGTACATCTAGGCTCTGTT+TGG + tig0003649:7822-7841 Msa1340020:three_prime_UTR 45.0%
GATCTCAGAGAGAACGGTCA+TGG - tig0003649:3015-3034 Msa1340020:intergenic 50.0%
ATCTGAGCTGAGGTAGCTTG+AGG - tig0003649:3106-3125 Msa1340020:intergenic 50.0%
!! CTGTTAAGACAAGGCGTCGT+GGG - tig0003649:3579-3598 Msa1340020:intergenic 50.0%
CGAGGCAACCTGTTAAGACA+AGG - tig0003649:3588-3607 Msa1340020:intergenic 50.0%
GGCTGAAGTTGAAGCTGAAC+TGG + tig0003649:4258-4277 Msa1340020:CDS 50.0%
CAGTCCCTTAAGACGATGTG+CGG + tig0003649:4504-4523 Msa1340020:intron 50.0%
AACCCATTTGGCGTGGTTCT+TGG + tig0003649:5226-5245 Msa1340020:CDS 50.0%
CTCCAAGAACCACGCCAAAT+GGG - tig0003649:5231-5250 Msa1340020:intergenic 50.0%
CATTTGGCGTGGTTCTTGGA+GGG + tig0003649:5230-5249 Msa1340020:CDS 50.0%
ACTTCTGCTGCTGTTATCGG+AGG + tig0003649:5540-5559 Msa1340020:CDS 50.0%
CTTCTGCTGCTGTTATCGGA+GGG + tig0003649:5541-5560 Msa1340020:CDS 50.0%
! ATTTGGCAGGTTGGACTCTC+AGG + tig0003649:5854-5873 Msa1340020:intron 50.0%
! GGTGGAAAGGCAAGCTCTTT+TGG - tig0003649:6030-6049 Msa1340020:intergenic 50.0%
AAGAGCTTGCCTTTCCACCT+TGG + tig0003649:6031-6050 Msa1340020:three_prime_UTR 50.0%
AGAGCTTGCCTTTCCACCTT+GGG + tig0003649:6032-6051 Msa1340020:three_prime_UTR 50.0%
! AGCTTTGACCCAAGGTGGAA+AGG - tig0003649:6043-6062 Msa1340020:intergenic 50.0%
! GAGAGTTTTCCCTTGACAGG+GGG + tig0003649:6240-6259 Msa1340020:three_prime_UTR 50.0%
TCCTTATACACCATCCCAGG+GGG - tig0003649:6454-6473 Msa1340020:intergenic 50.0%
GTCCTTATACACCATCCCAG+GGG - tig0003649:6455-6474 Msa1340020:intergenic 50.0%
ACTGTGAAAATGACCCTGCC+TGG + tig0003649:6485-6504 Msa1340020:three_prime_UTR 50.0%
CTGTGAAAATGACCCTGCCT+GGG + tig0003649:6486-6505 Msa1340020:three_prime_UTR 50.0%
TACTTCCTACAACCCAGGCA+GGG - tig0003649:6501-6520 Msa1340020:intergenic 50.0%
TTACTTCCTACAACCCAGGC+AGG - tig0003649:6502-6521 Msa1340020:intergenic 50.0%
CAAGATTGGGGTGAGGTAGA+AGG + tig0003649:6527-6546 Msa1340020:three_prime_UTR 50.0%
AGATTGGGGTGAGGTAGAAG+GGG + tig0003649:6529-6548 Msa1340020:three_prime_UTR 50.0%
ACATACAGGCATGGACGGAA+AGG - tig0003649:6635-6654 Msa1340020:intergenic 50.0%
TGGCTTGATGTTGGGGACAT+CGG - tig0003649:6961-6980 Msa1340020:intergenic 50.0%
CAAGGGATGGCTTGATGTTG+GGG - tig0003649:6968-6987 Msa1340020:intergenic 50.0%
GCAAGGGATGGCTTGATGTT+GGG - tig0003649:6969-6988 Msa1340020:intergenic 50.0%
AGCAAGGGATGGCTTGATGT+TGG - tig0003649:6970-6989 Msa1340020:intergenic 50.0%
!! CTTAAGTTGGGCTCCAGTGA+AGG - tig0003649:7014-7033 Msa1340020:intergenic 50.0%
GGAGCCCAACTTAAGTAGCA+TGG + tig0003649:7019-7038 Msa1340020:three_prime_UTR 50.0%
CTACTTGAGGGTAGGTGAAG+TGG - tig0003649:7402-7421 Msa1340020:intergenic 50.0%
GAGCTGAGGTAGCTTGAGGT+GGG - tig0003649:3102-3121 Msa1340020:intergenic 55.0%
TGAGCTGAGGTAGCTTGAGG+TGG - tig0003649:3103-3122 Msa1340020:intergenic 55.0%
!! CCTGTTAAGACAAGGCGTCG+TGG - tig0003649:3580-3599 Msa1340020:intergenic 55.0%
CCACGACGCCTTGTCTTAAC+AGG + tig0003649:3577-3596 Msa1340020:CDS 55.0%
TGGTTGGGCTGCTCCAAATC+TGG + tig0003649:3785-3804 Msa1340020:CDS 55.0%
GGACAGGGAATCAGAGGAGT+TGG + tig0003649:4237-4256 Msa1340020:intron 55.0%
TGAATGGGGTGACAAGAGCC+AGG + tig0003649:5078-5097 Msa1340020:CDS 55.0%
CCTCCAAGAACCACGCCAAA+TGG - tig0003649:5232-5251 Msa1340020:intergenic 55.0%
CCATTTGGCGTGGTTCTTGG+AGG + tig0003649:5229-5248 Msa1340020:CDS 55.0%
TCCCCCTGGGATGGTGTATA+AGG + tig0003649:6450-6469 Msa1340020:three_prime_UTR 55.0%
AATGACCCTGCCTGGGTTGT+AGG + tig0003649:6493-6512 Msa1340020:three_prime_UTR 55.0%
GGCTTGATGTTGGGGACATC+GGG - tig0003649:6960-6979 Msa1340020:intergenic 55.0%
GTTGGGCTCCAGTGAAGGAA+AGG - tig0003649:7009-7028 Msa1340020:intergenic 55.0%
GGGGTGACAAGAGCCAGGTA+AGG + tig0003649:5083-5102 Msa1340020:intron 60.0%
! TGGCAGGTTGGACTCTCAGG+TGG + tig0003649:5857-5876 Msa1340020:intron 60.0%
GGGCCTGAGATTAGAGCGAG+TGG - tig0003649:7515-7534 Msa1340020:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0003649 gene 2779 7869 2779 ID=Msa1340020;Name=Msa1340020
tig0003649 mRNA 2779 7869 2779 ID=Msa1340020-mRNA-1;Parent=Msa1340020;Name=Msa1340020-mRNA-1;_AED=0.04;_eAED=0.04;_QI=100|1|1|1|0.75|0.76|13|1902|228
tig0003649 exon 2779 2896 2779 ID=Msa1340020-mRNA-1:exon:2359;Parent=Msa1340020-mRNA-1
tig0003649 exon 2993 3061 2993 ID=Msa1340020-mRNA-1:exon:2360;Parent=Msa1340020-mRNA-1
tig0003649 exon 3559 3618 3559 ID=Msa1340020-mRNA-1:exon:2361;Parent=Msa1340020-mRNA-1
tig0003649 exon 3759 3806 3759 ID=Msa1340020-mRNA-1:exon:2362;Parent=Msa1340020-mRNA-1
tig0003649 exon 4041 4129 4041 ID=Msa1340020-mRNA-1:exon:2363;Parent=Msa1340020-mRNA-1
tig0003649 exon 4243 4279 4243 ID=Msa1340020-mRNA-1:exon:2364;Parent=Msa1340020-mRNA-1
tig0003649 exon 4359 4406 4359 ID=Msa1340020-mRNA-1:exon:2365;Parent=Msa1340020-mRNA-1
tig0003649 exon 4900 4968 4900 ID=Msa1340020-mRNA-1:exon:2366;Parent=Msa1340020-mRNA-1
tig0003649 exon 5055 5099 5055 ID=Msa1340020-mRNA-1:exon:2367;Parent=Msa1340020-mRNA-1
tig0003649 exon 5196 5257 5196 ID=Msa1340020-mRNA-1:exon:2368;Parent=Msa1340020-mRNA-1
tig0003649 exon 5524 5596 5524 ID=Msa1340020-mRNA-1:exon:2369;Parent=Msa1340020-mRNA-1
tig0003649 exon 5863 6838 5863 ID=Msa1340020-mRNA-1:exon:2370;Parent=Msa1340020-mRNA-1
tig0003649 exon 6875 7869 6875 ID=Msa1340020-mRNA-1:exon:2371;Parent=Msa1340020-mRNA-1
tig0003649 five_prime_UTR 2779 2878 2779 ID=Msa1340020-mRNA-1:five_prime_utr;Parent=Msa1340020-mRNA-1
tig0003649 CDS 2879 2896 2879 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 CDS 2993 3061 2993 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 CDS 3559 3618 3559 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 CDS 3759 3806 3759 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 CDS 4041 4129 4041 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 CDS 4243 4279 4243 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 CDS 4359 4406 4359 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 CDS 4900 4968 4900 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 CDS 5055 5099 5055 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 CDS 5196 5257 5196 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 CDS 5524 5596 5524 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 CDS 5863 5931 5863 ID=Msa1340020-mRNA-1:cds;Parent=Msa1340020-mRNA-1
tig0003649 three_prime_UTR 5932 6838 5932 ID=Msa1340020-mRNA-1:three_prime_utr;Parent=Msa1340020-mRNA-1
tig0003649 three_prime_UTR 6875 7869 6875 ID=Msa1340020-mRNA-1:three_prime_utr;Parent=Msa1340020-mRNA-1
Gene Sequence

>Msa1340020

ATGAGCTCAATTGTTCAGGGTTTTACAAAGTCACTCGCCATGACCGTTCTCTCTGAGATCGGTGATAAGACTTTTTTTGCAGCTGCGATACTGGCTATGCGACACCCACGACGCCTTGTCTTAACAGGTTGCCTCGCAGCTTTGATAGTGATGACAATTCTCTCTGTTCTTGTTGGTTGGGCTGCTCCAAATCTGATCTCTCGTAGTTGGGCTCATCACATTACGACGTTCTTATTCTTCGGGTTTGGACTTTGGTCCTTGAAAGAGGCTATATTTGGAGAAGGGGAATCAGAGGAGTTGGCTGAAGTTGAAGCTGAACTGGACAAAGATTGGAAGGCTAAAAATGGAGCTACAAAAGATACCAAAAAGGTTGATGATGCCACAAAAAAACATAAACGGCCATTTTTATCTCAGTTTTTCTCTCCCATCTTGTTACAGGCATTTTCTATCACTTTTTTTGGTGAATGGGGTGACAAGAGCCAGTTGGCTACCATAGGTTTAGCTGCAGATGAAAACCCATTTGGCGTGGTTCTTGGAGGGATTCTGGGGCACGCGTTGTGTACTTCTGCTGCTGTTATCGGAGGGAAGAGTTTAGCATCTCAGATTTCTGAAAAAGTGGTTGGACTCTCAGGTGGAATTCTTTTTATTGTTTTTGGTATCCAATCATTCCTTTCTTCAGTCGAATGA

Protein sequence

>Msa1340020

MSSIVQGFTKSLAMTVLSEIGDKTFFAAAILAMRHPRRLVLTGCLAALIVMTILSVLVGWAAPNLISRSWAHHITTFLFFGFGLWSLKEAIFGEGESEELAEVEAELDKDWKAKNGATKDTKKVDDATKKHKRPFLSQFFSPILLQAFSITFFGEWGDKSQLATIGLAADENPFGVVLGGILGHALCTSAAVIGGKSLASQISEKVVGLSGGILFIVFGIQSFLSSVE*