Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145520 | sp|Q8RYD1|REM16_ARATH | 32.402 | 358 | 205 | 9 | 8 | 360 | 3 | 328 | 1.04e-51 | 178 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145520 | G7I576 | 96.196 | 368 | 14 | 0 | 1 | 368 | 1 | 368 | 0.0 | 738 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0145520 | TF | B3 |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008410 | Msa0145520 | 0.847963 | 8.288955e-60 | -8.615850e-47 |
| Msa0010560 | Msa0145520 | 0.812233 | 4.700354e-51 | -8.615850e-47 |
| Msa0014800 | Msa0145520 | 0.830521 | 2.802803e-55 | -8.615850e-47 |
| Msa0050990 | Msa0145520 | 0.807259 | 5.515543e-50 | -8.615850e-47 |
| Msa0064350 | Msa0145520 | 0.828344 | 9.474310e-55 | -8.615850e-47 |
| Msa0069330 | Msa0145520 | 0.810177 | 1.311938e-50 | -8.615850e-47 |
| Msa0081230 | Msa0145520 | 0.804280 | 2.329826e-49 | -8.615850e-47 |
| Msa0095010 | Msa0145520 | 0.811745 | 6.004945e-51 | -8.615850e-47 |
| Msa0101300 | Msa0145520 | 0.824735 | 6.870684e-54 | -8.615850e-47 |
| Msa0101690 | Msa0145520 | 0.945537 | 2.534873e-104 | -8.615850e-47 |
| Msa0104550 | Msa0145520 | 0.808527 | 2.964130e-50 | -8.615850e-47 |
| Msa0140300 | Msa0145520 | 0.813258 | 2.803853e-51 | -8.615850e-47 |
| Msa0143380 | Msa0145520 | 0.806410 | 8.339407e-50 | -8.615850e-47 |
| Msa0145520 | Msa0159770 | 0.800496 | 1.402703e-48 | -8.615850e-47 |
| Msa0145520 | Msa0184020 | 0.825718 | 4.024189e-54 | -8.615850e-47 |
| Msa0145520 | Msa0188680 | -0.800268 | 1.560951e-48 | -8.615850e-47 |
| Msa0145520 | Msa0197930 | 0.807483 | 4.945916e-50 | -8.615850e-47 |
| Msa0145520 | Msa0199690 | 0.815096 | 1.101498e-51 | -8.615850e-47 |
| Msa0145520 | Msa0210250 | 0.802865 | 4.580650e-49 | -8.615850e-47 |
| Msa0145520 | Msa0212930 | 0.804811 | 1.806066e-49 | -8.615850e-47 |
| Msa0145520 | Msa0219190 | 0.819699 | 1.012643e-52 | -8.615850e-47 |
| Msa0145520 | Msa0225180 | 0.813777 | 2.155973e-51 | -8.615850e-47 |
| Msa0145520 | Msa0248980 | 0.800676 | 1.288979e-48 | -8.615850e-47 |
| Msa0145520 | Msa0250670 | 0.805056 | 1.604704e-49 | -8.615850e-47 |
| Msa0145520 | Msa0270220 | -0.815992 | 6.956714e-52 | -8.615850e-47 |
| Msa0145520 | Msa0287650 | 0.800969 | 1.122914e-48 | -8.615850e-47 |
| Msa0145520 | Msa0290760 | 0.800129 | 1.665610e-48 | -8.615850e-47 |
| Msa0145520 | Msa0298240 | 0.822432 | 2.376673e-53 | -8.615850e-47 |
| Msa0145520 | Msa0300120 | 0.840835 | 6.844598e-58 | -8.615850e-47 |
| Msa0145520 | Msa0307830 | -0.817306 | 3.531681e-52 | -8.615850e-47 |
| Msa0145520 | Msa0311700 | 0.811117 | 8.219890e-51 | -8.615850e-47 |
| Msa0145520 | Msa0338140 | 0.804393 | 2.207040e-49 | -8.615850e-47 |
| Msa0145520 | Msa0372660 | 0.804040 | 2.614283e-49 | -8.615850e-47 |
| Msa0145520 | Msa0410870 | 0.808233 | 3.425755e-50 | -8.615850e-47 |
| Msa0145520 | Msa0422400 | 0.805697 | 1.177722e-49 | -8.615850e-47 |
| Msa0145520 | Msa0426330 | 0.800233 | 1.586594e-48 | -8.615850e-47 |
| Msa0145520 | Msa0433640 | 0.802331 | 5.902146e-49 | -8.615850e-47 |
| Msa0145520 | Msa0436500 | 0.801295 | 9.634013e-49 | -8.615850e-47 |
| Msa0145520 | Msa0444350 | 0.804617 | 1.982083e-49 | -8.615850e-47 |
| Msa0145520 | Msa0449830 | 0.804253 | 2.360698e-49 | -8.615850e-47 |
| Msa0145520 | Msa0474950 | 0.809131 | 2.202336e-50 | -8.615850e-47 |
| Msa0145520 | Msa0477490 | 0.802067 | 6.689511e-49 | -8.615850e-47 |
| Msa0145520 | Msa0485120 | 0.830702 | 2.531403e-55 | -8.615850e-47 |
| Msa0145520 | Msa0521540 | 0.806288 | 8.846086e-50 | -8.615850e-47 |
| Msa0145520 | Msa0537920 | 0.847143 | 1.392959e-59 | -8.615850e-47 |
| Msa0145520 | Msa0538220 | 0.806561 | 7.747889e-50 | -8.615850e-47 |
| Msa0145520 | Msa0552810 | 0.817181 | 3.768019e-52 | -8.615850e-47 |
| Msa0145520 | Msa0565620 | -0.820026 | 8.523907e-53 | -8.615850e-47 |
| Msa0145520 | Msa0585960 | 0.803444 | 3.476324e-49 | -8.615850e-47 |
| Msa0145520 | Msa0598460 | 0.800078 | 1.706038e-48 | -8.615850e-47 |
| Msa0145520 | Msa0602250 | 0.803237 | 3.836136e-49 | -8.615850e-47 |
| Msa0145520 | Msa0626220 | 0.817141 | 3.846673e-52 | -8.615850e-47 |
| Msa0145520 | Msa0631200 | 0.817388 | 3.384234e-52 | -8.615850e-47 |
| Msa0145520 | Msa0647770 | 0.811191 | 7.918757e-51 | -8.615850e-47 |
| Msa0145520 | Msa0649980 | 0.811045 | 8.520511e-51 | -8.615850e-47 |
| Msa0145520 | Msa0657460 | -0.805642 | 1.209697e-49 | -8.615850e-47 |
| Msa0145520 | Msa0658390 | 0.810362 | 1.196953e-50 | -8.615850e-47 |
| Msa0145520 | Msa0663900 | 0.831275 | 1.830377e-55 | -8.615850e-47 |
| Msa0145520 | Msa0669440 | 0.802506 | 5.432213e-49 | -8.615850e-47 |
| Msa0145520 | Msa0670270 | 0.800308 | 1.531706e-48 | -8.615850e-47 |
| Msa0145520 | Msa0673010 | -0.806394 | 8.404422e-50 | -8.615850e-47 |
| Msa0145520 | Msa0688500 | 0.814039 | 1.886937e-51 | -8.615850e-47 |
| Msa0145520 | Msa0692840 | 0.842670 | 2.244176e-58 | -8.615850e-47 |
| Msa0145520 | Msa0692940 | 0.822281 | 2.576848e-53 | -8.615850e-47 |
| Msa0145520 | Msa0703110 | 0.800335 | 1.512550e-48 | -8.615850e-47 |
| Msa0145520 | Msa0709500 | 0.818700 | 1.709521e-52 | -8.615850e-47 |
| Msa0145520 | Msa0724830 | 0.805920 | 1.057483e-49 | -8.615850e-47 |
| Msa0145520 | Msa0726830 | 0.812967 | 3.247310e-51 | -8.615850e-47 |
| Msa0145520 | Msa0726860 | 0.810589 | 1.069380e-50 | -8.615850e-47 |
| Msa0145520 | Msa0734960 | 0.802122 | 6.515532e-49 | -8.615850e-47 |
| Msa0145520 | Msa0740640 | 0.819424 | 1.169827e-52 | -8.615850e-47 |
| Msa0145520 | Msa0754030 | 0.805802 | 1.119478e-49 | -8.615850e-47 |
| Msa0145520 | Msa0757870 | 0.800180 | 1.626637e-48 | -8.615850e-47 |
| Msa0145520 | Msa0765380 | 0.802237 | 6.169993e-49 | -8.615850e-47 |
| Msa0145520 | Msa0767220 | 0.813916 | 2.009202e-51 | -8.615850e-47 |
| Msa0145520 | Msa0784380 | 0.802355 | 5.834454e-49 | -8.615850e-47 |
| Msa0145520 | Msa0788710 | 0.801089 | 1.061399e-48 | -8.615850e-47 |
| Msa0145520 | Msa0790390 | -0.806105 | 9.666313e-50 | -8.615850e-47 |
| Msa0145520 | Msa0790850 | 0.812616 | 3.877122e-51 | -8.615850e-47 |
| Msa0145520 | Msa0807110 | 0.812623 | 3.862637e-51 | -8.615850e-47 |
| Msa0145520 | Msa0833040 | 0.815348 | 9.682704e-52 | -8.615850e-47 |
| Msa0145520 | Msa0842830 | 0.808981 | 2.370855e-50 | -8.615850e-47 |
| Msa0145520 | Msa0869100 | 0.805762 | 1.141704e-49 | -8.615850e-47 |
| Msa0145520 | Msa0877410 | 0.811727 | 6.056750e-51 | -8.615850e-47 |
| Msa0145520 | Msa0895790 | 0.816273 | 6.020137e-52 | -8.615850e-47 |
| Msa0145520 | Msa0905260 | 0.800878 | 1.172274e-48 | -8.615850e-47 |
| Msa0145520 | Msa0930140 | 0.817090 | 3.948338e-52 | -8.615850e-47 |
| Msa0145520 | Msa0933230 | 0.800784 | 1.225023e-48 | -8.615850e-47 |
| Msa0145520 | Msa0937240 | 0.805044 | 1.614035e-49 | -8.615850e-47 |
| Msa0145520 | Msa0937550 | 0.801347 | 9.397156e-49 | -8.615850e-47 |
| Msa0145520 | Msa0961690 | 0.800560 | 1.360898e-48 | -8.615850e-47 |
| Msa0145520 | Msa0967370 | 0.821061 | 4.931282e-53 | -8.615850e-47 |
| Msa0145520 | Msa0974530 | 0.801547 | 8.550967e-49 | -8.615850e-47 |
| Msa0145520 | Msa0974810 | 0.810820 | 9.530110e-51 | -8.615850e-47 |
| Msa0145520 | Msa1012370 | 0.801954 | 7.055459e-49 | -8.615850e-47 |
| Msa0145520 | Msa1013770 | 0.801860 | 7.376967e-49 | -8.615850e-47 |
| Msa0145520 | Msa1023920 | 0.810929 | 9.026570e-51 | -8.615850e-47 |
| Msa0145520 | Msa1032450 | 0.805280 | 1.440812e-49 | -8.615850e-47 |
| Msa0145520 | Msa1041530 | 0.821016 | 5.050816e-53 | -8.615850e-47 |
| Msa0145520 | Msa1063950 | 0.806938 | 6.450908e-50 | -8.615850e-47 |
| Msa0145520 | Msa1078710 | 0.804662 | 1.939833e-49 | -8.615850e-47 |
| Msa0145520 | Msa1079590 | 0.808053 | 3.741266e-50 | -8.615850e-47 |
| Msa0145520 | Msa1081570 | 0.811751 | 5.987029e-51 | -8.615850e-47 |
| Msa0145520 | Msa1100720 | 0.806176 | 9.342895e-50 | -8.615850e-47 |
| Msa0145520 | Msa1107900 | 0.805860 | 1.088713e-49 | -8.615850e-47 |
| Msa0145520 | Msa1123880 | 0.812007 | 5.264701e-51 | -8.615850e-47 |
| Msa0145520 | Msa1124410 | 0.802590 | 5.219446e-49 | -8.615850e-47 |
| Msa0145520 | Msa1125760 | 0.801485 | 8.804800e-49 | -8.615850e-47 |
| Msa0145520 | Msa1127140 | 0.823207 | 1.567943e-53 | -8.615850e-47 |
| Msa0145520 | Msa1129960 | 0.812506 | 4.097503e-51 | -8.615850e-47 |
| Msa0145520 | Msa1129970 | 0.806390 | 8.421708e-50 | -8.615850e-47 |
| Msa0145520 | Msa1133710 | 0.813010 | 3.178285e-51 | -8.615850e-47 |
| Msa0145520 | Msa1134110 | 0.822799 | 1.951928e-53 | -8.615850e-47 |
| Msa0145520 | Msa1166400 | 0.824046 | 9.978801e-54 | -8.615850e-47 |
| Msa0145520 | Msa1169990 | 0.806864 | 6.686163e-50 | -8.615850e-47 |
| Msa0145520 | Msa1171360 | 0.816816 | 4.550454e-52 | -8.615850e-47 |
| Msa0145520 | Msa1172670 | 0.804140 | 2.492217e-49 | -8.615850e-47 |
| Msa0145520 | Msa1174100 | 0.801569 | 8.462591e-49 | -8.615850e-47 |
| Msa0145520 | Msa1204530 | 0.802484 | 5.487908e-49 | -8.615850e-47 |
| Msa0145520 | Msa1214890 | 0.805886 | 1.074866e-49 | -8.615850e-47 |
| Msa0145520 | Msa1217830 | 0.812769 | 3.588350e-51 | -8.615850e-47 |
| Msa0145520 | Msa1252740 | 0.802129 | 6.494262e-49 | -8.615850e-47 |
| Msa0145520 | Msa1303250 | 0.809224 | 2.103171e-50 | -8.615850e-47 |
| Msa0145520 | Msa1305710 | 0.813169 | 2.932339e-51 | -8.615850e-47 |
| Msa0145520 | Msa1340020 | 0.842476 | 2.526607e-58 | -8.615850e-47 |
| Msa0145520 | Msa1348360 | 0.808833 | 2.549724e-50 | -8.615850e-47 |
| Msa0145520 | Msa1361400 | 0.800384 | 1.478171e-48 | -8.615850e-47 |
| Msa0145520 | Msa1365150 | 0.814029 | 1.896720e-51 | -8.615850e-47 |
| Msa0145520 | Msa1367880 | 0.831296 | 1.808973e-55 | -8.615850e-47 |
| Msa0145520 | Msa1376650 | 0.800948 | 1.134251e-48 | -8.615850e-47 |
| Msa0145520 | Msa1377800 | 0.826703 | 2.346024e-54 | -8.615850e-47 |
| Msa0145520 | Msa1382780 | 0.806879 | 6.639538e-50 | -8.615850e-47 |
| Msa0145520 | Msa1403580 | -0.814990 | 1.162845e-51 | -8.615850e-47 |
| Msa0145520 | Msa1408870 | 0.812431 | 4.255280e-51 | -8.615850e-47 |
| Msa0145520 | Msa1420060 | 0.820588 | 6.334605e-53 | -8.615850e-47 |
| Msa0145520 | Msa1423910 | 0.818933 | 1.513441e-52 | -8.615850e-47 |
| Msa0145520 | Msa1424780 | 0.802907 | 4.490440e-49 | -8.615850e-47 |
| Msa0145520 | Msa1443290 | -0.810836 | 9.455791e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145520 | MtrunA17_Chr1g0154161 | 85.054 | 368 | 12 | 1 | 1 | 368 | 1 | 325 | 0.0 | 636 |
| Msa0145520 | MtrunA17_Chr1g0154171 | 82.451 | 359 | 59 | 3 | 11 | 367 | 4 | 360 | 0.0 | 582 |
| Msa0145520 | MtrunA17_Chr1g0154191 | 71.467 | 375 | 81 | 6 | 13 | 368 | 5 | 372 | 0.0 | 528 |
| Msa0145520 | MtrunA17_Chr1g0154211 | 59.645 | 394 | 114 | 6 | 11 | 361 | 4 | 395 | 1.39e-154 | 440 |
| Msa0145520 | MtrunA17_Chr1g0154151 | 67.913 | 321 | 82 | 8 | 45 | 360 | 19 | 323 | 6.83e-145 | 413 |
| Msa0145520 | MtrunA17_Chr1g0154111 | 58.904 | 365 | 126 | 6 | 13 | 359 | 9 | 367 | 1.61e-142 | 417 |
| Msa0145520 | MtrunA17_Chr1g0154111 | 59.024 | 205 | 63 | 5 | 45 | 229 | 368 | 571 | 2.86e-64 | 214 |
| Msa0145520 | MtrunA17_Chr1g0154131 | 60.458 | 349 | 98 | 7 | 14 | 360 | 168 | 478 | 3.02e-138 | 402 |
| Msa0145520 | MtrunA17_Chr1g0154131 | 68.862 | 167 | 45 | 2 | 6 | 166 | 2 | 167 | 2.34e-69 | 225 |
| Msa0145520 | MtrunA17_Chr1g0154101 | 51.111 | 450 | 116 | 7 | 14 | 363 | 168 | 613 | 3.53e-134 | 403 |
| Msa0145520 | MtrunA17_Chr1g0154101 | 69.767 | 172 | 41 | 2 | 1 | 166 | 1 | 167 | 1.37e-73 | 244 |
| Msa0145520 | MtrunA17_Chr1g0154101 | 39.489 | 352 | 187 | 9 | 30 | 367 | 503 | 842 | 4.42e-57 | 199 |
| Msa0145520 | MtrunA17_Chr1g0154071 | 52.432 | 370 | 148 | 6 | 4 | 355 | 131 | 490 | 4.03e-116 | 346 |
| Msa0145520 | MtrunA17_Chr1g0154071 | 79.710 | 138 | 26 | 2 | 5 | 141 | 2 | 138 | 6.33e-69 | 224 |
| Msa0145520 | MtrunA17_Chr1g0154241 | 59.041 | 271 | 64 | 5 | 13 | 242 | 5 | 269 | 1.26e-94 | 283 |
| Msa0145520 | MtrunA17_Chr1g0154251 | 43.059 | 425 | 144 | 16 | 6 | 349 | 2 | 409 | 1.18e-87 | 273 |
| Msa0145520 | MtrunA17_Chr1g0154041 | 38.764 | 356 | 190 | 9 | 30 | 368 | 252 | 596 | 1.33e-62 | 210 |
| Msa0145520 | MtrunA17_Chr1g0154041 | 34.943 | 352 | 201 | 7 | 30 | 361 | 17 | 360 | 7.37e-59 | 200 |
| Msa0145520 | MtrunA17_Chr3g0131891 | 26.225 | 347 | 190 | 12 | 28 | 360 | 17 | 311 | 1.35e-21 | 94.4 |
| Msa0145520 | MtrunA17_Chr7g0233561 | 24.713 | 348 | 201 | 9 | 28 | 359 | 16 | 318 | 4.61e-21 | 92.8 |
| Msa0145520 | MtrunA17_Chr1g0208771 | 24.383 | 324 | 212 | 9 | 34 | 354 | 1 | 294 | 8.36e-21 | 93.6 |
| Msa0145520 | MtrunA17_Chr1g0154121 | 44.000 | 100 | 45 | 2 | 280 | 368 | 2 | 101 | 1.79e-19 | 82.8 |
| Msa0145520 | MtrunA17_Chr7g0233531 | 24.528 | 318 | 189 | 7 | 46 | 360 | 2 | 271 | 2.27e-18 | 84.3 |
| Msa0145520 | MtrunA17_Chr7g0233541 | 22.910 | 323 | 205 | 8 | 46 | 360 | 2 | 288 | 3.74e-17 | 80.9 |
| Msa0145520 | MtrunA17_Chr8g0390841 | 25.641 | 351 | 195 | 17 | 23 | 354 | 32 | 335 | 6.27e-17 | 82.0 |
| Msa0145520 | MtrunA17_Chr7g0233571 | 33.333 | 102 | 68 | 0 | 23 | 124 | 3 | 104 | 9.57e-14 | 70.1 |
| Msa0145520 | MtrunA17_Chr1g0163071 | 24.194 | 310 | 204 | 12 | 46 | 349 | 2 | 286 | 4.45e-13 | 69.3 |
| Msa0145520 | MtrunA17_Chr1g0163181 | 24.080 | 299 | 191 | 10 | 42 | 339 | 17 | 280 | 1.47e-12 | 68.6 |
| Msa0145520 | MtrunA17_Chr1g0162441 | 40.506 | 79 | 47 | 0 | 42 | 120 | 19 | 97 | 1.21e-11 | 65.9 |
| Msa0145520 | MtrunA17_Chr4g0033961 | 39.744 | 78 | 47 | 0 | 42 | 119 | 18 | 95 | 3.29e-11 | 64.3 |
| Msa0145520 | MtrunA17_Chr3g0077461 | 32.632 | 95 | 64 | 0 | 29 | 123 | 236 | 330 | 4.40e-11 | 63.9 |
| Msa0145520 | MtrunA17_Chr5g0419201 | 32.632 | 95 | 63 | 1 | 30 | 124 | 17 | 110 | 8.38e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0145520 | AT4G33280.1 | 32.402 | 358 | 205 | 9 | 8 | 360 | 3 | 328 | 1.06e-52 | 178 |
| Msa0145520 | AT4G33280.3 | 31.738 | 397 | 217 | 14 | 8 | 360 | 3 | 389 | 1.01e-47 | 167 |
| Msa0145520 | AT4G33280.2 | 52.174 | 138 | 63 | 2 | 8 | 144 | 3 | 138 | 2.19e-44 | 155 |
| Msa0145520 | AT3G18990.2 | 26.050 | 357 | 235 | 12 | 27 | 364 | 5 | 351 | 6.00e-22 | 96.3 |
| Msa0145520 | AT3G18990.1 | 26.393 | 341 | 223 | 11 | 27 | 349 | 5 | 335 | 1.11e-21 | 95.1 |
| Msa0145520 | AT4G34400.2 | 35.455 | 110 | 65 | 3 | 23 | 129 | 8 | 114 | 8.22e-16 | 78.6 |
| Msa0145520 | AT4G34400.1 | 35.455 | 110 | 65 | 3 | 23 | 129 | 8 | 114 | 8.22e-16 | 78.6 |
| Msa0145520 | AT3G06220.1 | 25.134 | 187 | 110 | 7 | 30 | 211 | 11 | 172 | 1.37e-14 | 71.6 |
| Msa0145520 | AT5G66980.1 | 22.756 | 312 | 196 | 10 | 42 | 340 | 21 | 300 | 1.07e-13 | 71.6 |
| Msa0145520 | AT3G06160.5 | 25.366 | 205 | 136 | 4 | 30 | 220 | 11 | 212 | 1.25e-13 | 71.2 |
| Msa0145520 | AT3G06160.4 | 25.366 | 205 | 136 | 4 | 30 | 220 | 11 | 212 | 1.25e-13 | 71.2 |
| Msa0145520 | AT3G06160.3 | 25.366 | 205 | 136 | 4 | 30 | 220 | 11 | 212 | 1.25e-13 | 71.2 |
| Msa0145520 | AT3G06160.1 | 25.366 | 205 | 136 | 4 | 30 | 220 | 26 | 227 | 1.45e-13 | 71.2 |
| Msa0145520 | AT3G06160.2 | 25.366 | 205 | 136 | 4 | 30 | 220 | 70 | 271 | 2.77e-13 | 70.9 |
| Msa0145520 | AT5G60130.5 | 38.202 | 89 | 50 | 2 | 44 | 127 | 27 | 115 | 6.73e-11 | 62.4 |
| Msa0145520 | AT5G60130.3 | 38.202 | 89 | 50 | 2 | 44 | 127 | 1 | 89 | 8.05e-11 | 62.8 |
| Msa0145520 | AT5G60130.2 | 38.202 | 89 | 50 | 2 | 44 | 127 | 27 | 115 | 9.16e-11 | 62.8 |
Find 79 sgRNAs with CRISPR-Local
Find 245 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTGATGCAGGTTTATATATT+TGG | 0.094425 | 1_4:-5206329 | Msa0145520:CDS |
| CGTGATAATGGCGTCAATTT+TGG | 0.150911 | 1_4:-5206386 | Msa0145520:CDS |
| TCACCAGAATCATCTGATTT+TGG | 0.157947 | 1_4:+5207290 | None:intergenic |
| CCAGAAAATGTGACTCTTAA+AGG | 0.201467 | 1_4:-5207737 | Msa0145520:CDS |
| TACAAGTTGTTGTTGAAAAT+TGG | 0.275640 | 1_4:+5209536 | None:intergenic |
| TGATGCAGGTTTATATATTT+GGG | 0.316840 | 1_4:-5206328 | Msa0145520:CDS |
| GTCTTCCTCGCTTCTTAGTC+TGG | 0.318640 | 1_4:+5207315 | None:intergenic |
| TTCAACAACAGGCTTCTTCT+TGG | 0.319153 | 1_4:+5207349 | None:intergenic |
| ATGGCCTTTGTTCGTGATAA+TGG | 0.338775 | 1_4:-5206398 | Msa0145520:CDS |
| CTTGGGAGGAAGATATTTAC+TGG | 0.342132 | 1_4:-5209605 | Msa0145520:CDS |
| TGTGCAGCAGAGAAATGATA+TGG | 0.347411 | 1_4:+5206536 | None:intergenic |
| GAAGAGAAGGAGGACAAAAC+TGG | 0.361111 | 1_4:-5209641 | Msa0145520:CDS |
| AGTGGAGTTGTGTGGAATAT+AGG | 0.366675 | 1_4:-5207710 | Msa0145520:CDS |
| GAAGGTGATGACAATCAAAA+TGG | 0.368417 | 1_4:-5206296 | Msa0145520:CDS |
| TGAAATGGATGAATTGAAAA+TGG | 0.368925 | 1_4:+5209580 | None:intergenic |
| CCACCAAAATCAGATGATTC+TGG | 0.370898 | 1_4:-5207293 | Msa0145520:CDS |
| CTTCCTTCCTGATTCTATCC+AGG | 0.383721 | 1_4:+5206770 | None:intergenic |
| CAGGTTTATATATTTGGGTC+TGG | 0.392240 | 1_4:-5206323 | Msa0145520:CDS |
| ACGTGAACCACCGACATTGC+CGG | 0.427066 | 1_4:+5206684 | None:intergenic |
| ACTGGGATGGAAGCAGATCT+TGG | 0.444710 | 1_4:-5209623 | Msa0145520:CDS |
| CCTCGCTTCTTAGTCTGGAC+AGG | 0.455288 | 1_4:+5207320 | None:intergenic |
| CGTTACTAATTATGTGATGC+AGG | 0.456839 | 1_4:-5206342 | Msa0145520:CDS |
| CATCCACCCTGGATAGAATC+AGG | 0.461491 | 1_4:-5206777 | Msa0145520:CDS |
| TTTAACAAAATATGGAAAAG+AGG | 0.467557 | 1_4:+5206717 | None:intergenic |
| GGCCATCCAACCTCCACAAA+AGG | 0.468848 | 1_4:+5206415 | None:intergenic |
| TTCCTTCCTGATTCTATCCA+GGG | 0.469402 | 1_4:+5206771 | None:intergenic |
| CAATGGTGAATCACACTTTG+AGG | 0.476504 | 1_4:-5207588 | Msa0145520:CDS |
| GTTACGCTTCGCAATTCAAA+AGG | 0.477769 | 1_4:-5206491 | Msa0145520:CDS |
| AACTCCGTCCCATGTCCTAA+AGG | 0.478589 | 1_4:-5206452 | Msa0145520:CDS |
| TTTGTTAAAATACTTAAAGC+CGG | 0.484390 | 1_4:-5206703 | Msa0145520:CDS |
| ACTCCGTCCCATGTCCTAAA+GGG | 0.485469 | 1_4:-5206451 | Msa0145520:CDS |
| TGTTGAGTCTGCTTCCCCTC+AGG | 0.486277 | 1_4:-5207435 | Msa0145520:CDS |
| AAAAGAGGAGGTAAATGATT+CGG | 0.487480 | 1_4:+5206732 | None:intergenic |
| CTGGGATGGAAGCAGATCTT+GGG | 0.489620 | 1_4:-5209622 | Msa0145520:CDS |
| TGAGAAGCTACTACGTGATT+TGG | 0.490561 | 1_4:-5207270 | Msa0145520:CDS |
| GTTTGGGATGGAACAGCAGC+AGG | 0.494894 | 1_4:+5207386 | None:intergenic |
| GCAATTCAAAAGGCGAATGT+TGG | 0.495644 | 1_4:-5206481 | Msa0145520:CDS |
| TTCCTTGTCTTTAAGTACAA+TGG | 0.496096 | 1_4:-5207605 | Msa0145520:CDS |
| CATCCCAAACAACCAGCAAA+AGG | 0.510135 | 1_4:-5207373 | Msa0145520:CDS |
| ACAGGCGTAACTTCAACAAC+AGG | 0.519553 | 1_4:+5207338 | None:intergenic |
| ATATTTGGGTCTGGAAAGGA+AGG | 0.520911 | 1_4:-5206314 | Msa0145520:CDS |
| TGTCGGTGGTTCACGTACTC+TGG | 0.524951 | 1_4:-5206677 | Msa0145520:intron |
| AGATGATACTGTTTACTTCG+TGG | 0.529756 | 1_4:-5207675 | Msa0145520:CDS |
| TTTCAAATGGGAGGAAGAGA+AGG | 0.551523 | 1_4:-5209654 | None:intergenic |
| CTGTTTACTTCGTGGACAGT+TGG | 0.553049 | 1_4:-5207667 | Msa0145520:CDS |
| CACCATTGTACTTAAAGACA+AGG | 0.554483 | 1_4:+5207603 | None:intergenic |
| AACTGAACAAGGGGATAGCA+AGG | 0.567712 | 1_4:-5207492 | Msa0145520:CDS |
| GGATGGAACAGCAGCAGGTG+TGG | 0.569628 | 1_4:+5207391 | None:intergenic |
| ATACTTAAAGCCGGCAATGT+CGG | 0.570757 | 1_4:-5206694 | Msa0145520:CDS |
| TTATATATTTGGGTCTGGAA+AGG | 0.573582 | 1_4:-5206318 | Msa0145520:CDS |
| GTGCAGCAGAGAAATGATAT+GGG | 0.574698 | 1_4:+5206537 | None:intergenic |
| ATATTCCACACAACTCCACT+AGG | 0.578077 | 1_4:+5207713 | None:intergenic |
| TGAGTCTGCTTCCCCTCAGG+TGG | 0.579761 | 1_4:-5207432 | Msa0145520:CDS |
| TGATTTGGTGGCTTGTAACA+AGG | 0.579854 | 1_4:-5207255 | Msa0145520:CDS |
| AACTGACTGTTTCAAATGGG+AGG | 0.581709 | 1_4:-5209663 | None:intergenic |
| GTGACTCTTAAAGGTCCTAG+TGG | 0.582196 | 1_4:-5207728 | Msa0145520:CDS |
| GAAGCTACTACGTGATTTGG+TGG | 0.582551 | 1_4:-5207267 | Msa0145520:CDS |
| GGACATGCTCAAACTGAACA+AGG | 0.584733 | 1_4:-5207503 | Msa0145520:CDS |
| AACAAAATATGGAAAAGAGG+AGG | 0.585641 | 1_4:+5206720 | None:intergenic |
| AAGAGAAGGAGGACAAAACT+GGG | 0.592018 | 1_4:-5209640 | Msa0145520:CDS |
| GAAGGAGGACAAAACTGGGA+TGG | 0.593813 | 1_4:-5209636 | Msa0145520:CDS |
| CCTCACAGAGGCATCCACCC+TGG | 0.600251 | 1_4:-5206788 | Msa0145520:intron |
| TTTCCCTTTAGGACATGGGA+CGG | 0.601551 | 1_4:+5206448 | None:intergenic |
| AAGTTGTTGTTGAAAATTGG+TGG | 0.610802 | 1_4:+5209539 | None:intergenic |
| CTTCCTGATTCTATCCAGGG+TGG | 0.611685 | 1_4:+5206774 | None:intergenic |
| CTTAAAGCCGGCAATGTCGG+TGG | 0.614556 | 1_4:-5206691 | Msa0145520:CDS |
| GTGACTGCATCAGCCACCTG+AGG | 0.618568 | 1_4:+5207419 | None:intergenic |
| AAGGTCCTAGTGGAGTTGTG+TGG | 0.624686 | 1_4:-5207718 | Msa0145520:CDS |
| GGATGGAAGCAGATCTTGGG+AGG | 0.627280 | 1_4:-5209619 | Msa0145520:CDS |
| GACGCCATTATCACGAACAA+AGG | 0.630765 | 1_4:+5206394 | None:intergenic |
| ACAAGGGGATAGCAAGGCAA+AGG | 0.631522 | 1_4:-5207486 | Msa0145520:CDS |
| CAAATGGGAGGAAGAGAAGG+AGG | 0.632169 | 1_4:-5209651 | Msa0145520:CDS |
| CACCCTGGATAGAATCAGGA+AGG | 0.632882 | 1_4:-5206773 | Msa0145520:CDS |
| ACATGCTCAAACTGAACAAG+GGG | 0.633900 | 1_4:-5207501 | Msa0145520:CDS |
| TGACTGCATCAGCCACCTGA+GGG | 0.639967 | 1_4:+5207420 | None:intergenic |
| GACATGCTCAAACTGAACAA+GGG | 0.641869 | 1_4:-5207502 | Msa0145520:CDS |
| GCTTGTAACAAGGAACACTC+AGG | 0.674573 | 1_4:-5207245 | Msa0145520:intron |
| GACTGCATCAGCCACCTGAG+GGG | 0.684545 | 1_4:+5207421 | None:intergenic |
| CCTGTCCAGACTAAGAAGCG+AGG | 0.710957 | 1_4:-5207320 | Msa0145520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAGATAAAAAATTGAAA+AGG | + | chr1_4:5206515-5206534 | None:intergenic | 10.0% |
| !!! | CACTTTTATTTAAATAAATT+GGG | - | chr1_4:5207849-5207868 | Msa0145520:intron | 10.0% |
| !!! | ACTTTTATTTAAATAAATTG+GGG | - | chr1_4:5207850-5207869 | Msa0145520:intron | 10.0% |
| !!! | AAAATTTATATTTTAATTGC+AGG | - | chr1_4:5208118-5208137 | Msa0145520:intron | 10.0% |
| !!! | TAATTTGTAAAATATAGTAA+AGG | + | chr1_4:5208727-5208746 | None:intergenic | 10.0% |
| !!! | TTAAGTATTTTAACAAAATA+TGG | + | chr1_4:5209213-5209232 | None:intergenic | 10.0% |
| !!! | ATATGCTTGTTTTTAAATTA+TGG | - | chr1_4:5206640-5206659 | Msa0145520:intron | 15.0% |
| !!! | TAAGTTTTTTCATTTCATTT+TGG | + | chr1_4:5206756-5206775 | None:intergenic | 15.0% |
| !! | AAATGAAATGAAAAAACTTA+AGG | - | chr1_4:5206756-5206775 | Msa0145520:CDS | 15.0% |
| !! | AATGAAATGAAAAAACTTAA+GGG | - | chr1_4:5206757-5206776 | Msa0145520:CDS | 15.0% |
| !!! | GCACTTTTATTTAAATAAAT+TGG | - | chr1_4:5207848-5207867 | Msa0145520:intron | 15.0% |
| !!! | AATATGAATACTTTAGAAGA+TGG | + | chr1_4:5206428-5206447 | None:intergenic | 20.0% |
| !!! | TCTTCTAAAGTATTCATATT+TGG | - | chr1_4:5206428-5206447 | Msa0145520:CDS | 20.0% |
| !!! | CTTCTAAAGTATTCATATTT+GGG | - | chr1_4:5206429-5206448 | Msa0145520:CDS | 20.0% |
| !! | AGATAAAAAATTGAAAAGGT+GGG | + | chr1_4:5206511-5206530 | None:intergenic | 20.0% |
| !! | AAGATAAAAAATTGAAAAGG+TGG | + | chr1_4:5206512-5206531 | None:intergenic | 20.0% |
| !!! | TTGTTTTTAAATTATGGCTT+AGG | - | chr1_4:5206646-5206665 | Msa0145520:intron | 20.0% |
| !!! | TGTTTTTAAATTATGGCTTA+GGG | - | chr1_4:5206647-5206666 | Msa0145520:intron | 20.0% |
| !! | AAAACCTAAAAATAACTGAA+GGG | - | chr1_4:5206848-5206867 | Msa0145520:intron | 20.0% |
| !!! | CTTTTTTTCTATCATATGTT+TGG | - | chr1_4:5207279-5207298 | Msa0145520:CDS | 20.0% |
| !!! | AAATTGTCTGAAAATGTTTT+AGG | + | chr1_4:5208149-5208168 | None:intergenic | 20.0% |
| !! | ATAGTAAAGGTTAATGAAAA+AGG | + | chr1_4:5208714-5208733 | None:intergenic | 20.0% |
| !! | TTTAACAAAATATGGAAAAG+AGG | + | chr1_4:5209205-5209224 | None:intergenic | 20.0% |
| !! | TTTGTTAAAATACTTAAAGC+CGG | - | chr1_4:5209216-5209235 | Msa0145520:intron | 20.0% |
| ! | TGAAATGGATGAATTGAAAA+TGG | + | chr1_4:5206342-5206361 | None:intergenic | 25.0% |
| !!! | TTTTAAGAAATAGGGTGAAA+TGG | + | chr1_4:5206357-5206376 | None:intergenic | 25.0% |
| !! | TACAAGTTGTTGTTGAAAAT+TGG | + | chr1_4:5206386-5206405 | None:intergenic | 25.0% |
| !!! | AGTTTTCAGCTTTTGATTTT+TGG | - | chr1_4:5206572-5206591 | Msa0145520:intron | 25.0% |
| ! | CAAAACCTAAAAATAACTGA+AGG | - | chr1_4:5206847-5206866 | Msa0145520:intron | 25.0% |
| ! | TTCTTAAAAGTTGCATTCTT+TGG | + | chr1_4:5207170-5207189 | None:intergenic | 25.0% |
| !!! | AATGCAACTTTTAAGAACTT+AGG | - | chr1_4:5207173-5207192 | Msa0145520:intron | 25.0% |
| !!! | ATGCAACTTTTAAGAACTTA+GGG | - | chr1_4:5207174-5207193 | Msa0145520:intron | 25.0% |
| ! | ATTGTATGATTGTGTTTGTT+GGG | + | chr1_4:5207353-5207372 | None:intergenic | 25.0% |
| !!! | TTATCTTGTTGCTTTGATTA+AGG | - | chr1_4:5207677-5207696 | Msa0145520:CDS | 25.0% |
| !!! | TTAAGGTTTTGATTTACACT+TGG | - | chr1_4:5207694-5207713 | Msa0145520:CDS | 25.0% |
| ! | ATTTAAATAAATTGGGGAAG+AGG | - | chr1_4:5207856-5207875 | Msa0145520:intron | 25.0% |
| !!! | TTTGAGGTTTTAATCTTTGA+TGG | - | chr1_4:5208347-5208366 | Msa0145520:intron | 25.0% |
| ! | AGTTTAATAGGACACATTAA+GGG | + | chr1_4:5208837-5208856 | None:intergenic | 25.0% |
| ! | TGTTTATGTTGAAGATACAA+TGG | + | chr1_4:5208889-5208908 | None:intergenic | 25.0% |
| ! | TAGAATGAAATCAAATCACA+AGG | + | chr1_4:5208966-5208985 | None:intergenic | 25.0% |
| !! | TAAGCTTTGGCATAAATATA+AGG | + | chr1_4:5209074-5209093 | None:intergenic | 25.0% |
| ! | TTACGCAAAATAATAAGCTT+TGG | + | chr1_4:5209087-5209106 | None:intergenic | 25.0% |
| ! | AAGTTACTTAAAGATAAGTG+TGG | + | chr1_4:5209285-5209304 | None:intergenic | 25.0% |
| !! | AAAATAATTCACTCCTTTTG+TGG | - | chr1_4:5209491-5209510 | Msa0145520:intron | 25.0% |
| ! | TGATGCAGGTTTATATATTT+GGG | - | chr1_4:5209591-5209610 | Msa0145520:CDS | 25.0% |
| !!! | GGTGGTAGTTTTAAGAAATA+GGG | + | chr1_4:5206365-5206384 | None:intergenic | 30.0% |
| !!! | TGGTGGTAGTTTTAAGAAAT+AGG | + | chr1_4:5206366-5206385 | None:intergenic | 30.0% |
| ! | AAGTTGTTGTTGAAAATTGG+TGG | + | chr1_4:5206383-5206402 | None:intergenic | 30.0% |
| ! | TGAATACTTTAGAAGATGGA+AGG | + | chr1_4:5206424-5206443 | None:intergenic | 30.0% |
| TTTGGTCCATTAAGTTATGA+AGG | + | chr1_4:5206738-5206757 | None:intergenic | 30.0% | |
| !!! | GTTATTTTTAGGTTTTGCTC+TGG | + | chr1_4:5206844-5206863 | None:intergenic | 30.0% |
| !! | TTTTAAGTCACACTCAACAA+GGG | + | chr1_4:5206890-5206909 | None:intergenic | 30.0% |
| !! | ATTTTAAGTCACACTCAACA+AGG | + | chr1_4:5206891-5206910 | None:intergenic | 30.0% |
| GAGGAAAGAATTATGAAAGA+GGG | - | chr1_4:5206932-5206951 | Msa0145520:intron | 30.0% | |
| ! | AGAATTATGAAAGAGGGTTT+TGG | - | chr1_4:5206938-5206957 | Msa0145520:intron | 30.0% |
| !!! | AATTTTGATTCTGTCTCATG+TGG | - | chr1_4:5207026-5207045 | Msa0145520:intron | 30.0% |
| TGGGAAAAATCTTTAAATCG+AGG | + | chr1_4:5207126-5207145 | None:intergenic | 30.0% | |
| GAATAAGATATGACAGTGAT+AGG | - | chr1_4:5207251-5207270 | Msa0145520:CDS | 30.0% | |
| ! | TTGTATGATTGTGTTTGTTG+GGG | + | chr1_4:5207352-5207371 | None:intergenic | 30.0% |
| GATTGTATGATTGTGTTTGT+TGG | + | chr1_4:5207354-5207373 | None:intergenic | 30.0% | |
| !! | AAGCTCTAAATGTCTATAAC+GGG | + | chr1_4:5207380-5207399 | None:intergenic | 30.0% |
| !! | CAAGCTCTAAATGTCTATAA+CGG | + | chr1_4:5207381-5207400 | None:intergenic | 30.0% |
| ! | TTATAGACATTTAGAGCTTG+AGG | - | chr1_4:5207381-5207400 | Msa0145520:CDS | 30.0% |
| ! | TATAGACATTTAGAGCTTGA+GGG | - | chr1_4:5207382-5207401 | Msa0145520:CDS | 30.0% |
| ! | ATCTTTGAGTTTCTTGTTCA+TGG | - | chr1_4:5207461-5207480 | Msa0145520:CDS | 30.0% |
| ! | TCTTTGAGTTTCTTGTTCAT+GGG | - | chr1_4:5207462-5207481 | Msa0145520:CDS | 30.0% |
| TTGGGAAATGAGTAGAAATT+AGG | - | chr1_4:5207491-5207510 | Msa0145520:CDS | 30.0% | |
| ! | AGTAGAAATTAGGTTGTTCT+TGG | - | chr1_4:5207501-5207520 | Msa0145520:CDS | 30.0% |
| !! | GAAACTCATTGATAGTGAAT+TGG | - | chr1_4:5207573-5207592 | Msa0145520:CDS | 30.0% |
| TACAATTTGATTACCCAGTT+CGG | + | chr1_4:5207634-5207653 | None:intergenic | 30.0% | |
| TATCGGGGACAAATTTAAAA+TGG | + | chr1_4:5207914-5207933 | None:intergenic | 30.0% | |
| TACAGAGTTCAAATCTTATC+GGG | + | chr1_4:5207930-5207949 | None:intergenic | 30.0% | |
| GTACAGAGTTCAAATCTTAT+CGG | + | chr1_4:5207931-5207950 | None:intergenic | 30.0% | |
| TTCCTTGTCTTTAAGTACAA+TGG | - | chr1_4:5208314-5208333 | Msa0145520:intron | 30.0% | |
| ! | TGGAAATAGTTTTTGTGAGA+AGG | - | chr1_4:5208367-5208386 | Msa0145520:intron | 30.0% |
| !!! | AAGGCAACTTCTTATTTTGT+CGG | - | chr1_4:5208386-5208405 | Msa0145520:intron | 30.0% |
| !!! | TCTTATTTTGTCGGAAAATG+TGG | - | chr1_4:5208395-5208414 | Msa0145520:intron | 30.0% |
| GAGTTTAATAGGACACATTA+AGG | + | chr1_4:5208838-5208857 | None:intergenic | 30.0% | |
| AATGAAATCAAATCACAAGG+AGG | + | chr1_4:5208963-5208982 | None:intergenic | 30.0% | |
| AAAAGAGGAGGTAAATGATT+CGG | + | chr1_4:5209190-5209209 | None:intergenic | 30.0% | |
| AACAAAATATGGAAAAGAGG+AGG | + | chr1_4:5209202-5209221 | None:intergenic | 30.0% | |
| !!! | GTAACTTCTATTTTGAAGTC+AGG | + | chr1_4:5209413-5209432 | None:intergenic | 30.0% |
| !!! | TTATTTTCCCTTTAGGACAT+GGG | + | chr1_4:5209478-5209497 | None:intergenic | 30.0% |
| !!! | ATTATTTTCCCTTTAGGACA+TGG | + | chr1_4:5209479-5209498 | None:intergenic | 30.0% |
| ! | GAGTGAATTATTTTCCCTTT+AGG | + | chr1_4:5209485-5209504 | None:intergenic | 30.0% |
| GTGATGCAGGTTTATATATT+TGG | - | chr1_4:5209590-5209609 | Msa0145520:CDS | 30.0% | |
| TTATATATTTGGGTCTGGAA+AGG | - | chr1_4:5209601-5209620 | Msa0145520:CDS | 30.0% | |
| GGGCAATGAAAAATAGTACA+TGG | + | chr1_4:5206491-5206510 | None:intergenic | 35.0% | |
| GTCCAACCTTCATAACTTAA+TGG | - | chr1_4:5206729-5206748 | Msa0145520:CDS | 35.0% | |
| GTCCATTAAGTTATGAAGGT+TGG | + | chr1_4:5206734-5206753 | None:intergenic | 35.0% | |
| AAATCCGTTCTGTTTCACTT+TGG | + | chr1_4:5206815-5206834 | None:intergenic | 35.0% | |
| ! | GTGAAACAGAACGGATTTAA+AGG | - | chr1_4:5206817-5206836 | Msa0145520:intron | 35.0% |
| !!! | TTGGCCCTTCAGTTATTTTT+AGG | + | chr1_4:5206855-5206874 | None:intergenic | 35.0% |
| AAAAATAACTGAAGGGCCAA+AGG | - | chr1_4:5206855-5206874 | Msa0145520:intron | 35.0% | |
| ACAAGGGTAAATTACACCTT+TGG | + | chr1_4:5206874-5206893 | None:intergenic | 35.0% | |
| GGAGGAAAGAATTATGAAAG+AGG | - | chr1_4:5206931-5206950 | Msa0145520:intron | 35.0% | |
| ATCATATCCTACACACCAAA+CGG | + | chr1_4:5207201-5207220 | None:intergenic | 35.0% | |
| GACATGATAGAATAGAGAGT+TGG | - | chr1_4:5207224-5207243 | Msa0145520:intron | 35.0% | |
| !! | TCTAAATGTCTATAACGGGT+CGG | + | chr1_4:5207376-5207395 | None:intergenic | 35.0% |
| CAACAATGACCTATGTTTGA+GGG | + | chr1_4:5207609-5207628 | None:intergenic | 35.0% | |
| CTCAAACATAGGTCATTGTT+GGG | - | chr1_4:5207608-5207627 | Msa0145520:CDS | 35.0% | |
| CAACAAGATAAAGAGAGTAG+AGG | + | chr1_4:5207668-5207687 | None:intergenic | 35.0% | |
| ! | AGATATGTTGTTGTTGCTTG+AGG | - | chr1_4:5207728-5207747 | Msa0145520:CDS | 35.0% |
| TGAATTCAGACTCAAATCTG+TGG | + | chr1_4:5207787-5207806 | None:intergenic | 35.0% | |
| GATTTACTACTTGCAGAACA+AGG | + | chr1_4:5207826-5207845 | None:intergenic | 35.0% | |
| ACAGAGTTCAAATCTTATCG+GGG | + | chr1_4:5207929-5207948 | None:intergenic | 35.0% | |
| GATTTGAACTCTGTACATTG+AGG | - | chr1_4:5207935-5207954 | Msa0145520:intron | 35.0% | |
| !! | CATCGATTTGTATACACTTG+AGG | + | chr1_4:5207993-5208012 | None:intergenic | 35.0% |
| !! | CCTTTAAGAGTCACATTTTC+TGG | + | chr1_4:5208185-5208204 | None:intergenic | 35.0% |
| CCAGAAAATGTGACTCTTAA+AGG | - | chr1_4:5208182-5208201 | Msa0145520:intron | 35.0% | |
| AGATGATACTGTTTACTTCG+TGG | - | chr1_4:5208244-5208263 | Msa0145520:intron | 35.0% | |
| CACCATTGTACTTAAAGACA+AGG | + | chr1_4:5208319-5208338 | None:intergenic | 35.0% | |
| ! | TCACCAGAATCATCTGATTT+TGG | + | chr1_4:5208632-5208651 | None:intergenic | 35.0% |
| AATAGGACACATTAAGGGAA+CGG | + | chr1_4:5208832-5208851 | None:intergenic | 35.0% | |
| ACTGAGAGAGAGAGTTTAAT+AGG | + | chr1_4:5208849-5208868 | None:intergenic | 35.0% | |
| ! | CTTTTCTTCCAACATTCACA+AGG | + | chr1_4:5208930-5208949 | None:intergenic | 35.0% |
| !! | AGACAAGTATCAGTTTGCTA+GGG | + | chr1_4:5209026-5209045 | None:intergenic | 35.0% |
| ! | TAGACAAGTATCAGTTTGCT+AGG | + | chr1_4:5209027-5209046 | None:intergenic | 35.0% |
| TAGCAAACTGATACTTGTCT+AGG | - | chr1_4:5209026-5209045 | Msa0145520:intron | 35.0% | |
| ATCTGCTTGAAAAACTGATC+TGG | - | chr1_4:5209319-5209338 | Msa0145520:intron | 35.0% | |
| ! | ATAATTCACTCCTTTTGTGG+AGG | - | chr1_4:5209494-5209513 | Msa0145520:intron | 35.0% |
| CGTTACTAATTATGTGATGC+AGG | - | chr1_4:5209577-5209596 | Msa0145520:CDS | 35.0% | |
| CAGGTTTATATATTTGGGTC+TGG | - | chr1_4:5209596-5209615 | Msa0145520:CDS | 35.0% | |
| GAAGGTGATGACAATCAAAA+TGG | - | chr1_4:5209623-5209642 | Msa0145520:CDS | 35.0% | |
| AAGAGAAGGAGGACAAAACT+GGG | - | chr1_4:5206279-5206298 | Msa0145520:CDS | 40.0% | |
| CTTGGGAGGAAGATATTTAC+TGG | - | chr1_4:5206314-5206333 | Msa0145520:CDS | 40.0% | |
| TCATATTTGGGTGTTCACTG+TGG | - | chr1_4:5206441-5206460 | Msa0145520:CDS | 40.0% | |
| AAATTATGGCTTAGGGACTG+TGG | - | chr1_4:5206654-5206673 | Msa0145520:intron | 40.0% | |
| GTGACCAAAGTGAAACAGAA+CGG | - | chr1_4:5206808-5206827 | Msa0145520:intron | 40.0% | |
| TCTCACCATGTTTCAAGAGA+AGG | - | chr1_4:5206910-5206929 | Msa0145520:intron | 40.0% | |
| TTCCTCCTTCTCTTGAAACA+TGG | + | chr1_4:5206918-5206937 | None:intergenic | 40.0% | |
| TTTGATTCTGTCTCATGTGG+AGG | - | chr1_4:5207029-5207048 | Msa0145520:intron | 40.0% | |
| TATAGCACAAAACTGACAGC+TGG | + | chr1_4:5207062-5207081 | None:intergenic | 40.0% | |
| CCAAGAGATTACACAAGAGT+GGG | + | chr1_4:5207145-5207164 | None:intergenic | 40.0% | |
| TCCAAGAGATTACACAAGAG+TGG | + | chr1_4:5207146-5207165 | None:intergenic | 40.0% | |
| TCATATCCTACACACCAAAC+GGG | + | chr1_4:5207200-5207219 | None:intergenic | 40.0% | |
| ! | ATGATTGTGTTTGTTGGGGT+AGG | + | chr1_4:5207348-5207367 | None:intergenic | 40.0% |
| ! | ATTTAGAGCTTGAGGGTCTT+TGG | - | chr1_4:5207389-5207408 | Msa0145520:CDS | 40.0% |
| ! | TTTAGAGCTTGAGGGTCTTT+GGG | - | chr1_4:5207390-5207409 | Msa0145520:CDS | 40.0% |
| ! | CAAAGATTTTCACTCACGTG+AGG | + | chr1_4:5207448-5207467 | None:intergenic | 40.0% |
| TCTTGTTCATGGGAAGAGAT+TGG | - | chr1_4:5207472-5207491 | Msa0145520:CDS | 40.0% | |
| CTTGTTCATGGGAAGAGATT+GGG | - | chr1_4:5207473-5207492 | Msa0145520:CDS | 40.0% | |
| CCAACAATGACCTATGTTTG+AGG | + | chr1_4:5207610-5207629 | None:intergenic | 40.0% | |
| CCTCAAACATAGGTCATTGT+TGG | - | chr1_4:5207607-5207626 | Msa0145520:CDS | 40.0% | |
| ! | TGTTGTTGCTTGAGGCTATT+TGG | - | chr1_4:5207736-5207755 | Msa0145520:CDS | 40.0% |
| GCTTGAGGCTATTTGGTTAT+TGG | - | chr1_4:5207743-5207762 | Msa0145520:CDS | 40.0% | |
| ATCTGTGGAGCAAGTATCAA+TGG | + | chr1_4:5207772-5207791 | None:intergenic | 40.0% | |
| ! | GCTAGCTTAATGTAAGAGCT+TGG | + | chr1_4:5207969-5207988 | None:intergenic | 40.0% |
| ATATTCCACACAACTCCACT+AGG | + | chr1_4:5208209-5208228 | None:intergenic | 40.0% | |
| AGTGGAGTTGTGTGGAATAT+AGG | - | chr1_4:5208209-5208228 | Msa0145520:intron | 40.0% | |
| CAATGGTGAATCACACTTTG+AGG | - | chr1_4:5208331-5208350 | Msa0145520:intron | 40.0% | |
| GACATGCTCAAACTGAACAA+GGG | - | chr1_4:5208417-5208436 | Msa0145520:intron | 40.0% | |
| ACATGCTCAAACTGAACAAG+GGG | - | chr1_4:5208418-5208437 | Msa0145520:intron | 40.0% | |
| !! | AACACTTCTGCTTTTAACGC+TGG | - | chr1_4:5208461-5208480 | Msa0145520:intron | 40.0% |
| TTCAACAACAGGCTTCTTCT+TGG | + | chr1_4:5208573-5208592 | None:intergenic | 40.0% | |
| ! | CCAGAATCATCTGATTTTGG+TGG | + | chr1_4:5208629-5208648 | None:intergenic | 40.0% |
| CCACCAAAATCAGATGATTC+TGG | - | chr1_4:5208626-5208645 | Msa0145520:intron | 40.0% | |
| TGAGAAGCTACTACGTGATT+TGG | - | chr1_4:5208649-5208668 | Msa0145520:intron | 40.0% | |
| !! | TGATTTGGTGGCTTGTAACA+AGG | - | chr1_4:5208664-5208683 | Msa0145520:intron | 40.0% |
| GGCAAGTTAGTTAAGAGAGA+GGG | + | chr1_4:5208783-5208802 | None:intergenic | 40.0% | |
| TGGCAAGTTAGTTAAGAGAG+AGG | + | chr1_4:5208784-5208803 | None:intergenic | 40.0% | |
| GTTGAAGATACAATGGTCAC+AGG | + | chr1_4:5208882-5208901 | None:intergenic | 40.0% | |
| ! | GTTTTCCTCCTTGTGAATGT+TGG | - | chr1_4:5208919-5208938 | Msa0145520:intron | 40.0% |
| TTCTTCCAACATTCACAAGG+AGG | + | chr1_4:5208927-5208946 | None:intergenic | 40.0% | |
| AACTGTTCAATTCCTCACAG+AGG | - | chr1_4:5209119-5209138 | Msa0145520:intron | 40.0% | |
| TTCCTTCCTGATTCTATCCA+GGG | + | chr1_4:5209151-5209170 | None:intergenic | 40.0% | |
| ATACTTAAAGCCGGCAATGT+CGG | - | chr1_4:5209225-5209244 | Msa0145520:intron | 40.0% | |
| GCTTGAAAAACTGATCTGGT+TGG | - | chr1_4:5209323-5209342 | Msa0145520:intron | 40.0% | |
| GTGCAGCAGAGAAATGATAT+GGG | + | chr1_4:5209385-5209404 | None:intergenic | 40.0% | |
| TGTGCAGCAGAGAAATGATA+TGG | + | chr1_4:5209386-5209405 | None:intergenic | 40.0% | |
| GTTACGCTTCGCAATTCAAA+AGG | - | chr1_4:5209428-5209447 | Msa0145520:intron | 40.0% | |
| GCAATTCAAAAGGCGAATGT+TGG | - | chr1_4:5209438-5209457 | Msa0145520:intron | 40.0% | |
| ATGGCCTTTGTTCGTGATAA+TGG | - | chr1_4:5209521-5209540 | Msa0145520:intron | 40.0% | |
| !!! | CGTGATAATGGCGTCAATTT+TGG | - | chr1_4:5209533-5209552 | Msa0145520:intron | 40.0% |
| ATATTTGGGTCTGGAAAGGA+AGG | - | chr1_4:5209605-5209624 | Msa0145520:CDS | 40.0% | |
| GAAGAGAAGGAGGACAAAAC+TGG | - | chr1_4:5206278-5206297 | Msa0145520:CDS | 45.0% | |
| TATTTGGGTGTTCACTGTGG+AGG | - | chr1_4:5206444-5206463 | Msa0145520:CDS | 45.0% | |
| CACCATGTTTCAAGAGAAGG+AGG | - | chr1_4:5206913-5206932 | Msa0145520:intron | 45.0% | |
| GCATGTGAAGTTTGTGTGCT+AGG | - | chr1_4:5206979-5206998 | Msa0145520:intron | 45.0% | |
| !!! | GGCGCATGGTTTGTGTTTTT+TGG | - | chr1_4:5207000-5207019 | Msa0145520:intron | 45.0% |
| CCCACTCTTGTGTAATCTCT+TGG | - | chr1_4:5207142-5207161 | Msa0145520:intron | 45.0% | |
| TTAAGAACTTAGGGCCCGTT+TGG | - | chr1_4:5207183-5207202 | Msa0145520:intron | 45.0% | |
| TTTGGGTGAGACTCTTAGGT+TGG | - | chr1_4:5207407-5207426 | Msa0145520:CDS | 45.0% | |
| TTGGGTGAGACTCTTAGGTT+GGG | - | chr1_4:5207408-5207427 | Msa0145520:CDS | 45.0% | |
| GTGACTCTTAAAGGTCCTAG+TGG | - | chr1_4:5208191-5208210 | Msa0145520:intron | 45.0% | |
| CTGTTTACTTCGTGGACAGT+TGG | - | chr1_4:5208252-5208271 | Msa0145520:intron | 45.0% | |
| GGACATGCTCAAACTGAACA+AGG | - | chr1_4:5208416-5208435 | Msa0145520:intron | 45.0% | |
| AACTGAACAAGGGGATAGCA+AGG | - | chr1_4:5208427-5208446 | Msa0145520:intron | 45.0% | |
| !! | CTTTTGCTGGTTGTTTGGGA+TGG | + | chr1_4:5208548-5208567 | None:intergenic | 45.0% |
| CATCCCAAACAACCAGCAAA+AGG | - | chr1_4:5208546-5208565 | Msa0145520:intron | 45.0% | |
| !! | GGTCCTTTTGCTGGTTGTTT+GGG | + | chr1_4:5208552-5208571 | None:intergenic | 45.0% |
| !! | TGGTCCTTTTGCTGGTTGTT+TGG | + | chr1_4:5208553-5208572 | None:intergenic | 45.0% |
| ! | CTTCTTCTTGGTCCTTTTGC+TGG | + | chr1_4:5208561-5208580 | None:intergenic | 45.0% |
| ACAGGCGTAACTTCAACAAC+AGG | + | chr1_4:5208584-5208603 | None:intergenic | 45.0% | |
| ! | GAAGCTACTACGTGATTTGG+TGG | - | chr1_4:5208652-5208671 | Msa0145520:intron | 45.0% |
| GCTTGTAACAAGGAACACTC+AGG | - | chr1_4:5208674-5208693 | Msa0145520:intron | 45.0% | |
| !! | ATACAGAGGAGAGTGCTTGT+TGG | + | chr1_4:5208804-5208823 | None:intergenic | 45.0% |
| AGGGAACGGACAAAATACAG+AGG | + | chr1_4:5208818-5208837 | None:intergenic | 45.0% | |
| CTTCCTTCCTGATTCTATCC+AGG | + | chr1_4:5209152-5209171 | None:intergenic | 45.0% | |
| !! | TTTCCCTTTAGGACATGGGA+CGG | + | chr1_4:5209474-5209493 | None:intergenic | 45.0% |
| ! | TTCACTCCTTTTGTGGAGGT+TGG | - | chr1_4:5209498-5209517 | Msa0145520:intron | 45.0% |
| GACGCCATTATCACGAACAA+AGG | + | chr1_4:5209528-5209547 | None:intergenic | 45.0% | |
| GAAGGAGGACAAAACTGGGA+TGG | - | chr1_4:5206283-5206302 | Msa0145520:CDS | 50.0% | |
| ACTGGGATGGAAGCAGATCT+TGG | - | chr1_4:5206296-5206315 | Msa0145520:CDS | 50.0% | |
| CTGGGATGGAAGCAGATCTT+GGG | - | chr1_4:5206297-5206316 | Msa0145520:CDS | 50.0% | |
| TTATGGCTTAGGGACTGTGG+TGG | - | chr1_4:5206657-5206676 | Msa0145520:intron | 50.0% | |
| AAGTTTGTGTGCTAGGCGCA+TGG | - | chr1_4:5206986-5207005 | Msa0145520:intron | 50.0% | |
| TACGCGTCCAATCATGTGCT+AGG | - | chr1_4:5207080-5207099 | Msa0145520:intron | 50.0% | |
| ACACGTGCCTAGCACATGAT+TGG | + | chr1_4:5207090-5207109 | None:intergenic | 50.0% | |
| GGTCTTTGGGTGAGACTCTT+AGG | - | chr1_4:5207403-5207422 | Msa0145520:CDS | 50.0% | |
| GAGCTCTCTCCCTCAAACAT+AGG | - | chr1_4:5207597-5207616 | Msa0145520:CDS | 50.0% | |
| AAGGTCCTAGTGGAGTTGTG+TGG | - | chr1_4:5208201-5208220 | Msa0145520:intron | 50.0% | |
| ACAAGGGGATAGCAAGGCAA+AGG | - | chr1_4:5208433-5208452 | Msa0145520:intron | 50.0% | |
| GTCTTCCTCGCTTCTTAGTC+TGG | + | chr1_4:5208607-5208626 | None:intergenic | 50.0% | |
| CATCCACCCTGGATAGAATC+AGG | - | chr1_4:5209142-5209161 | Msa0145520:intron | 50.0% | |
| CTTCCTGATTCTATCCAGGG+TGG | + | chr1_4:5209148-5209167 | None:intergenic | 50.0% | |
| CACCCTGGATAGAATCAGGA+AGG | - | chr1_4:5209146-5209165 | Msa0145520:intron | 50.0% | |
| AACTCCGTCCCATGTCCTAA+AGG | - | chr1_4:5209467-5209486 | Msa0145520:intron | 50.0% | |
| ACTCCGTCCCATGTCCTAAA+GGG | - | chr1_4:5209468-5209487 | Msa0145520:intron | 50.0% | |
| ! | CTCCTTTTGTGGAGGTTGGA+TGG | - | chr1_4:5209502-5209521 | Msa0145520:intron | 50.0% |
| GGATGGAAGCAGATCTTGGG+AGG | - | chr1_4:5206300-5206319 | Msa0145520:CDS | 55.0% | |
| CATGTGCTAGGCACGTGTCA+CGG | - | chr1_4:5207092-5207111 | Msa0145520:intron | 55.0% | |
| ATGTGCTAGGCACGTGTCAC+GGG | - | chr1_4:5207093-5207112 | Msa0145520:intron | 55.0% | |
| ! | TAGGCACGTGTCACGGGTTT+TGG | - | chr1_4:5207099-5207118 | Msa0145520:intron | 55.0% |
| !! | TTAGGGCCCGTTTGGTGTGT+AGG | - | chr1_4:5207191-5207210 | Msa0145520:intron | 55.0% |
| AGGTCATTGTTGGGCCGAAC+TGG | - | chr1_4:5207617-5207636 | Msa0145520:CDS | 55.0% | |
| GGTCATTGTTGGGCCGAACT+GGG | - | chr1_4:5207618-5207637 | Msa0145520:CDS | 55.0% | |
| TGTTGAGTCTGCTTCCCCTC+AGG | - | chr1_4:5208484-5208503 | Msa0145520:intron | 55.0% | |
| TGACTGCATCAGCCACCTGA+GGG | + | chr1_4:5208502-5208521 | None:intergenic | 55.0% | |
| ! | GTTTGGGATGGAACAGCAGC+AGG | + | chr1_4:5208536-5208555 | None:intergenic | 55.0% |
| CCTCGCTTCTTAGTCTGGAC+AGG | + | chr1_4:5208602-5208621 | None:intergenic | 55.0% | |
| CCTGTCCAGACTAAGAAGCG+AGG | - | chr1_4:5208599-5208618 | Msa0145520:intron | 55.0% | |
| CTTAAAGCCGGCAATGTCGG+TGG | - | chr1_4:5209228-5209247 | Msa0145520:intron | 55.0% | |
| ACGTGAACCACCGACATTGC+CGG | + | chr1_4:5209238-5209257 | None:intergenic | 55.0% | |
| TGTCGGTGGTTCACGTACTC+TGG | - | chr1_4:5209242-5209261 | Msa0145520:intron | 55.0% | |
| GGCCATCCAACCTCCACAAA+AGG | + | chr1_4:5209507-5209526 | None:intergenic | 55.0% | |
| !! | TTGGTTCTGCCTCGTGCGCT+AGG | - | chr1_4:5206957-5206976 | Msa0145520:intron | 60.0% |
| CTTCACATGCCTAGCGCACG+AGG | + | chr1_4:5206969-5206988 | None:intergenic | 60.0% | |
| TGAGTCTGCTTCCCCTCAGG+TGG | - | chr1_4:5208487-5208506 | Msa0145520:intron | 60.0% | |
| GACTGCATCAGCCACCTGAG+GGG | + | chr1_4:5208501-5208520 | None:intergenic | 60.0% | |
| GTGACTGCATCAGCCACCTG+AGG | + | chr1_4:5208503-5208522 | None:intergenic | 60.0% | |
| GGATGGAACAGCAGCAGGTG+TGG | + | chr1_4:5208531-5208550 | None:intergenic | 60.0% | |
| ! | CTGTCTCATGTGGAGGCGCG+CGG | - | chr1_4:5207036-5207055 | Msa0145520:intron | 65.0% |
| CCAGGGTGGATGCCTCTGTG+AGG | + | chr1_4:5209134-5209153 | None:intergenic | 65.0% | |
| !! | CCTCACAGAGGCATCCACCC+TGG | - | chr1_4:5209131-5209150 | Msa0145520:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 5206271 | 5209670 | 5206271 | ID=Msa0145520;Name=Msa0145520 |
| chr1_4 | mRNA | 5206271 | 5209670 | 5206271 | ID=Msa0145520-mRNA-1;Parent=Msa0145520;Name=Msa0145520-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|1|1|4|0|368 |
| chr1_4 | exon | 5209539 | 5209670 | 5209539 | ID=Msa0145520-mRNA-1:exon:2187;Parent=Msa0145520-mRNA-1 |
| chr1_4 | exon | 5207246 | 5207801 | 5207246 | ID=Msa0145520-mRNA-1:exon:2186;Parent=Msa0145520-mRNA-1 |
| chr1_4 | exon | 5206678 | 5206802 | 5206678 | ID=Msa0145520-mRNA-1:exon:2185;Parent=Msa0145520-mRNA-1 |
| chr1_4 | exon | 5206271 | 5206564 | 5206271 | ID=Msa0145520-mRNA-1:exon:2184;Parent=Msa0145520-mRNA-1 |
| chr1_4 | CDS | 5209539 | 5209670 | 5209539 | ID=Msa0145520-mRNA-1:cds;Parent=Msa0145520-mRNA-1 |
| chr1_4 | CDS | 5207246 | 5207801 | 5207246 | ID=Msa0145520-mRNA-1:cds;Parent=Msa0145520-mRNA-1 |
| chr1_4 | CDS | 5206678 | 5206802 | 5206678 | ID=Msa0145520-mRNA-1:cds;Parent=Msa0145520-mRNA-1 |
| chr1_4 | CDS | 5206271 | 5206564 | 5206271 | ID=Msa0145520-mRNA-1:cds;Parent=Msa0145520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
