AlfalfaGEDB | Msa0115870

M. sativa cultivar zhongmu-4 / Msa0115870

KEGG: K04797
GO: GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0016272 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032991 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02996.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115870	sp\|P57742\|PFD5_ARATH	72.368	152	39	2	1	152	1	149	2.86e-72	216

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115870	G7IE99	99.342	152	1	0	1	152	1	152	3.34e-105	306

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044990	Msa0115870	0.982507	2.852081e-155	-8.615850e-47
Msa0115870	Msa0159440	0.841531	4.490174e-58	-8.615850e-47
Msa0115870	Msa0186540	0.812115	4.985600e-51	-8.615850e-47
Msa0115870	Msa0199340	0.824826	6.540047e-54	-8.615850e-47
Msa0115870	Msa0199620	0.841858	3.683071e-58	-8.615850e-47
Msa0115870	Msa0218720	0.803180	3.943036e-49	-8.615850e-47
Msa0115870	Msa0229150	0.804273	2.338283e-49	-8.615850e-47
Msa0115870	Msa0280370	0.809012	2.334736e-50	-8.615850e-47
Msa0115870	Msa0317910	0.815481	9.044473e-52	-8.615850e-47
Msa0115870	Msa0319640	0.810622	1.051971e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115870	MtrunA17_Chr1g0211971	99.342	152	1	0	1	152	1	152	6.42e-109	306

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0115870	AT5G23290.1	72.368	152	39	2	1	152	1	149	2.91e-73	216

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Find 71 sgRNAs with CRISPR-Local

Find 191 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACGTTGCGGATGAAGCT+GGG	0.534177	1_3:-34770280	Msa0115870:CDS
AAAATGGCTTCGTCGAAGAG+CGG	0.608939	1_3:-34771100	Msa0115870:CDS
AAAATGGTGAGTAAAATTGG+TGG	0.618170	1_3:+34769886	None:intergenic
AAACAGAAAACCATGCCTGA+AGG	0.621995	1_3:-34770693	Msa0115870:intron
AAACGAATTCTTTCAATAAA+AGG	0.178416	1_3:+34770106	None:intergenic
AATCAAATCGGAGCTGGAGG+AGG	0.507340	1_3:-34771160	Msa0115870:five_prime_UTR
AATGGCATTCGAGATTTAAA+AGG	0.248481	1_3:-34770016	Msa0115870:three_prime_UTR
AATTGTAATCAAATCGGAGC+TGG	0.532751	1_3:-34771166	Msa0115870:five_prime_UTR
ACACAAGTCTTAATCAGAGC+AGG	0.545280	1_3:-34769961	Msa0115870:three_prime_UTR
ACACTCTAAGTGCTCTTTAT+TGG	0.153990	1_3:-34769852	Msa0115870:three_prime_UTR

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATCGAGAACCTTCAAAAAA+TGG	-	chr1_3:34769908-34769927	Msa0115870:three_prime_UTR	30.0%
CATGATGTAATTACAAATGC+AGG	-	chr1_3:34770706-34770725	Msa0115870:intron	30.0%
ATTCTATACCAGCTAACTTT+AGG	+	chr1_3:34770810-34770829	None:intergenic	30.0%
ACCATAGAAAATCATAACAC+TGG	-	chr1_3:34770862-34770881	Msa0115870:CDS	30.0%
TAGAAAATCTAGTTGACCAA+TGG	-	chr1_3:34770990-34771009	Msa0115870:CDS	30.0%
AATGGCATTCGAGATTTAAA+AGG	-	chr1_3:34771008-34771027	Msa0115870:CDS	30.0%
CGAGATTTAAAAGGTTAATG+TGG	-	chr1_3:34771017-34771036	Msa0115870:CDS	30.0%
GTTAATGTGGAAATAAGCAT+TGG	-	chr1_3:34771030-34771049	Msa0115870:CDS	30.0%
AAAATGGTGAGTAAAATTGG+TGG	+	chr1_3:34771141-34771160	None:intergenic	30.0%
GAGAAAATGGTGAGTAAAAT+TGG	+	chr1_3:34771144-34771163	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1_3	gene	34769753	34771293	34769753	ID=Msa0115870;Name=Msa0115870
chr1_3	mRNA	34769753	34771293	34769753	ID=Msa0115870-mRNA-1;Parent=Msa0115870;Name=Msa0115870-mRNA-1;_AED=0.01;_eAED=0.01;_QI=174\|1\|1\|1\|1\|1\|3\|482\|152
chr1_3	exon	34769753	34770318	34769753	ID=Msa0115870-mRNA-1:exon:11012;Parent=Msa0115870-mRNA-1
chr1_3	exon	34770632	34770709	34770632	ID=Msa0115870-mRNA-1:exon:11011;Parent=Msa0115870-mRNA-1
chr1_3	exon	34770823	34771293	34770823	ID=Msa0115870-mRNA-1:exon:11010;Parent=Msa0115870-mRNA-1
chr1_3	five_prime_UTR	34771120	34771293	34771120	ID=Msa0115870-mRNA-1:five_prime_utr;Parent=Msa0115870-mRNA-1
chr1_3	CDS	34770823	34771119	34770823	ID=Msa0115870-mRNA-1:cds;Parent=Msa0115870-mRNA-1
chr1_3	CDS	34770632	34770709	34770632	ID=Msa0115870-mRNA-1:cds;Parent=Msa0115870-mRNA-1
chr1_3	CDS	34770235	34770318	34770235	ID=Msa0115870-mRNA-1:cds;Parent=Msa0115870-mRNA-1
chr1_3	three_prime_UTR	34769753	34770234	34769753	ID=Msa0115870-mRNA-1:three_prime_utr;Parent=Msa0115870-mRNA-1

Gene Sequence

>Msa0115870

ATGGCTTCGTCGAAGAGCGGAAGCGGAGCGATGACTCTGGAGAGGATGAGCGTTGAACAGTTGAAAGCAGTTAAGGAACAAGCAGATATGGAAGTTAACCTTCTTCAAGACAGTCTCAACAATATCGGCACCGCCACCACTCGTCTTGAACTCGCCACCACCGCTCTCAACGATCTCTCTCTCCGTTCTCTCGGCAGTAAAATCCTTGTTCCTCTCACCGCTTCTCTCTATGTTCCTGCTACTCTTCAAGATCCTCATCACGTTCTCGTCGATATCGGAACTGGTTATTTCGTCGAGAAAACCATGCCTGAAGGAAAGGATTACTGCGAGCGCAAAATCAACTTACTCAAATCTAACTTCGATCAACTTGTTGAGGTTGCGTCCAAGAAGAAAAACGTTGCGGATGAAGCTGGGCTTATTTTACAGGCAAAATTGAAGCAATTAGCATCTTCATCCTAA

Protein sequence

>Msa0115870

MASSKSGSGAMTLERMSVEQLKAVKEQADMEVNLLQDSLNNIGTATTRLELATTALNDLSLRSLGSKILVPLTASLYVPATLQDPHHVLVDIGTGYFVEKTMPEGKDYCERKINLLKSNFDQLVEVASKKKNVADEAGLILQAKLKQLASSS*