AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0650280

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650280 MtrunA17_Chr4g0042381 94.805 77 4 0 136 212 668 744 2.01e-44 158
Msa0650280 MtrunA17_Chr4g0042381 61.871 139 8 1 1 139 378 471 5.03e-37 137
Msa0650280 MtrunA17_Chr4g0042391 87.952 83 10 0 136 218 668 750 2.45e-44 157
Msa0650280 MtrunA17_Chr4g0042391 58.273 139 13 1 1 139 378 471 4.15e-42 151
Msa0650280 MtrunA17_Chr4g0042351 85.185 81 12 0 136 216 668 748 3.01e-41 149
Msa0650280 MtrunA17_Chr4g0042351 59.603 151 12 2 1 151 378 479 4.82e-36 134
Msa0650280 MtrunA17_Chr4g0042341 51.701 147 60 1 2 137 393 539 1.76e-39 144
Msa0650280 MtrunA17_Chr4g0042341 57.143 84 35 1 139 222 741 823 7.01e-26 105
Msa0650280 MtrunA17_Chr4g0042361 51.449 138 58 2 2 137 425 555 2.28e-36 135
Msa0650280 MtrunA17_Chr4g0042361 61.250 80 30 1 139 218 757 835 2.81e-26 106
Msa0650280 MtrunA17_Chr4g0042441 58.571 140 46 4 1 137 385 515 1.48e-33 127
Msa0650280 MtrunA17_Chr4g0042441 58.974 78 31 1 136 212 715 792 4.53e-23 97.1
Msa0650280 MtrunA17_Chr4g0042401 56.028 141 52 4 1 137 386 520 1.07e-32 125
Msa0650280 MtrunA17_Chr4g0042401 53.933 89 41 0 130 218 712 800 4.57e-24 100
Msa0650280 MtrunA17_Chr8g0361281 44.521 146 68 4 2 137 387 529 1.27e-31 122
Msa0650280 MtrunA17_Chr8g0361281 47.561 82 41 2 139 219 731 811 7.83e-17 79.0
Msa0650280 MtrunA17_Chr4g0042421 55.000 140 55 3 1 137 386 520 3.48e-30 117
Msa0650280 MtrunA17_Chr2g0280711 42.405 158 68 4 2 137 390 546 1.68e-29 115
Msa0650280 MtrunA17_Chr2g0280711 57.746 71 30 0 139 209 748 818 4.26e-21 91.3
Msa0650280 MtrunA17_Chr6g0453571 42.029 138 76 2 1 137 222 356 3.73e-28 110
Msa0650280 MtrunA17_Chr3g0078541 43.262 141 74 3 1 137 407 545 3.86e-28 111
Msa0650280 MtrunA17_Chr3g0078541 46.250 80 42 1 139 218 748 826 3.20e-16 77.4
Msa0650280 MtrunA17_Chr4g0042431 56.471 85 37 0 139 223 49 133 4.86e-27 101
Msa0650280 MtrunA17_Chr3g0093161 41.958 143 66 5 2 137 381 513 2.52e-26 106
Msa0650280 MtrunA17_Chr3g0093161 46.154 91 46 2 139 227 715 804 4.35e-18 82.8
Msa0650280 MtrunA17_Chr8g0361441 53.571 140 56 4 2 137 388 522 5.71e-26 105
Msa0650280 MtrunA17_Chr8g0361441 59.211 76 30 1 139 214 724 798 2.01e-23 98.2
Msa0650280 MtrunA17_Chr8g0361251 39.437 142 77 3 2 137 384 522 8.20e-26 105
Msa0650280 MtrunA17_Chr8g0361251 53.165 79 36 1 139 217 724 801 2.65e-20 89.0
Msa0650280 MtrunA17_Chr3g0078551 43.750 144 73 5 1 137 397 539 4.09e-25 103
Msa0650280 MtrunA17_Chr3g0078551 45.000 80 43 1 139 218 742 820 3.45e-16 77.0
Msa0650280 MtrunA17_Chr3g0078521 41.844 141 76 3 1 137 396 534 5.08e-25 102
Msa0650280 MtrunA17_Chr3g0078521 47.297 74 38 1 139 212 737 809 2.09e-14 72.0
Msa0650280 MtrunA17_Chr2g0318811 38.621 145 73 4 2 137 379 516 9.14e-25 102
Msa0650280 MtrunA17_Chr2g0318811 42.105 76 41 2 139 212 717 791 4.65e-13 67.8
Msa0650280 MtrunA17_Chr5g0428111 43.796 137 69 3 2 137 390 519 1.09e-24 101
Msa0650280 MtrunA17_Chr5g0428111 46.753 77 40 1 136 212 718 793 2.28e-16 77.8
Msa0650280 MtrunA17_Chr3g0078531 42.446 139 74 3 1 137 408 542 1.47e-24 101
Msa0650280 MtrunA17_Chr3g0078531 46.250 80 42 1 139 218 745 823 2.88e-16 77.4
Msa0650280 MtrunA17_Chr2g0318831 41.259 143 71 5 2 137 382 518 2.78e-24 100
Msa0650280 MtrunA17_Chr2g0318831 47.222 72 35 2 139 208 719 789 5.81e-14 70.5
Msa0650280 MtrunA17_Chr4g0048631 35.625 160 78 4 2 137 390 548 1.77e-23 98.2
Msa0650280 MtrunA17_Chr4g0048631 54.286 70 32 0 139 208 750 819 2.26e-19 86.3
Msa0650280 MtrunA17_Chr2g0280701 37.589 141 76 3 2 137 383 516 3.60e-23 97.4
Msa0650280 MtrunA17_Chr2g0280701 48.649 74 38 0 139 212 718 791 2.13e-20 89.4
Msa0650280 MtrunA17_Chr8g0361301 38.732 142 78 3 2 137 384 522 8.67e-23 96.3
Msa0650280 MtrunA17_Chr8g0361301 43.056 72 40 1 139 210 724 794 6.66e-13 67.4
Msa0650280 MtrunA17_Chr8g0361341 53.165 79 36 1 139 217 56 133 1.90e-22 89.4
Msa0650280 MtrunA17_Chr8g0361261 35.971 139 86 2 2 137 415 553 3.27e-22 94.7
Msa0650280 MtrunA17_Chr8g0361261 44.444 72 39 1 139 210 755 825 2.93e-13 68.6
Msa0650280 MtrunA17_Chr5g0422921 36.552 145 71 5 2 137 382 514 3.92e-22 94.4
Msa0650280 MtrunA17_Chr5g0422921 49.351 77 38 1 136 212 713 788 2.40e-19 86.3
Msa0650280 MtrunA17_Chr5g0428101 41.429 140 71 5 2 139 389 519 8.89e-22 93.6
Msa0650280 MtrunA17_Chr5g0428101 44.578 83 45 1 136 218 716 797 7.84e-18 82.0
Msa0650280 MtrunA17_Chr3g0084431 35.036 137 81 3 2 137 381 510 9.23e-22 93.2
Msa0650280 MtrunA17_Chr3g0084431 51.429 70 33 1 139 208 712 780 2.57e-15 74.7
Msa0650280 MtrunA17_Chr3g0084491 37.681 138 70 5 2 137 399 522 1.84e-21 92.4
Msa0650280 MtrunA17_Chr3g0084491 47.500 80 40 2 139 217 724 802 7.53e-16 76.3
Msa0650280 MtrunA17_Chr3g0092301 48.750 80 40 1 140 219 149 227 6.97e-21 87.8
Msa0650280 MtrunA17_Chr5g0394011 46.154 91 40 3 131 212 554 644 7.21e-21 90.9
Msa0650280 MtrunA17_Chr3g0084451 34.416 154 68 5 2 137 384 522 7.34e-21 90.9
Msa0650280 MtrunA17_Chr3g0084451 46.250 80 41 2 139 217 724 802 4.33e-15 73.9
Msa0650280 MtrunA17_Chr2g0318841 35.664 143 81 3 2 137 379 517 7.76e-21 90.5
Msa0650280 MtrunA17_Chr2g0318841 37.931 87 51 2 139 223 718 803 7.31e-13 67.4
Msa0650280 MtrunA17_Chr3g0098791 37.063 143 73 3 2 137 386 518 8.94e-21 90.5
Msa0650280 MtrunA17_Chr3g0084441 36.054 147 69 4 2 137 390 522 9.06e-21 90.5
Msa0650280 MtrunA17_Chr3g0084441 47.500 80 40 2 139 217 724 802 4.64e-16 76.6
Msa0650280 MtrunA17_Chr3g0084621 38.129 139 77 3 2 137 387 519 1.00e-20 90.1
Msa0650280 MtrunA17_Chr2g0280681 34.783 138 85 2 1 137 384 517 1.18e-20 90.1
Msa0650280 MtrunA17_Chr2g0280681 41.333 75 43 1 139 212 719 793 2.25e-15 74.7
Msa0650280 MtrunA17_Chr1g0206351 52.055 73 35 0 136 208 568 640 8.09e-20 87.8
Msa0650280 MtrunA17_Chr3g0084421 34.028 144 80 3 2 139 346 480 1.68e-19 86.7
Msa0650280 MtrunA17_Chr3g0084421 52.857 70 32 1 139 208 680 748 6.27e-17 79.3
Msa0650280 MtrunA17_Chr8g0357961 49.333 75 38 0 139 213 702 776 3.18e-19 85.9
Msa0650280 MtrunA17_Chr8g0357991 49.333 75 38 0 139 213 703 777 3.18e-19 85.9
Msa0650280 MtrunA17_Chr2g0280691 33.125 160 83 2 2 137 383 542 7.70e-19 84.7
Msa0650280 MtrunA17_Chr2g0280691 50.000 70 35 0 139 208 743 812 3.47e-17 80.1
Msa0650280 MtrunA17_Chr3g0084411 35.664 143 74 4 2 137 384 515 8.75e-19 84.7
Msa0650280 MtrunA17_Chr3g0084411 50.000 70 34 1 139 208 717 785 2.89e-16 77.4
Msa0650280 MtrunA17_Chr8g0358061 43.210 81 46 0 139 219 274 354 1.36e-18 83.2
Msa0650280 MtrunA17_Chr3g0084691 33.750 160 81 4 2 137 385 543 1.65e-18 84.0
Msa0650280 MtrunA17_Chr3g0084691 46.914 81 39 3 139 217 740 818 2.51e-15 74.7
Msa0650280 MtrunA17_Chr8g0357981 46.667 75 40 0 139 213 523 597 2.71e-18 83.2
Msa0650280 MtrunA17_Chr8g0357881 40.909 88 52 0 139 226 694 781 3.32e-18 83.2
Msa0650280 MtrunA17_Chr6g0453561 46.667 75 40 0 139 213 85 159 4.51e-18 79.0
Msa0650280 MtrunA17_Chr2g0280781 37.226 137 70 4 12 137 395 526 6.32e-18 82.0
Msa0650280 MtrunA17_Chr2g0280781 38.144 97 58 1 112 208 703 797 3.65e-13 68.2
Msa0650280 MtrunA17_Chr8g0357781 45.333 75 41 0 139 213 49 123 6.44e-18 77.8
Msa0650280 MtrunA17_Chr8g0361431 35.036 137 80 3 2 137 372 500 7.39e-18 82.0
Msa0650280 MtrunA17_Chr8g0361431 44.286 70 38 1 139 208 702 770 7.74e-15 73.2
Msa0650280 MtrunA17_Chr3g0082941 37.000 100 62 1 128 226 380 479 9.96e-18 81.3
Msa0650280 MtrunA17_Chr3g0081071 37.624 101 63 0 128 228 136 236 1.10e-17 79.3
Msa0650280 MtrunA17_Chr7g0236341 34.731 167 63 5 2 137 383 534 1.37e-17 81.3
Msa0650280 MtrunA17_Chr7g0236341 44.000 75 42 0 138 212 734 808 4.48e-14 70.9
Msa0650280 MtrunA17_Chr8g0358031 44.000 75 42 0 139 213 697 771 1.79e-17 80.9
Msa0650280 MtrunA17_Chr8g0358141 45.333 75 41 0 139 213 296 370 2.25e-17 80.1
Msa0650280 MtrunA17_Chr8g0358081 45.333 75 41 0 139 213 679 753 2.43e-17 80.5
Msa0650280 MtrunA17_Chr4g0048761 31.944 144 90 2 2 137 407 550 2.58e-17 80.5
Msa0650280 MtrunA17_Chr8g0358121 45.946 74 40 0 139 212 680 753 2.67e-17 80.5
Msa0650280 MtrunA17_Chr8g0357921 38.272 81 50 0 139 219 49 129 3.14e-17 75.5
Msa0650280 MtrunA17_Chr8g0358071 45.333 75 41 0 139 213 694 768 3.60e-17 80.1
Msa0650280 MtrunA17_Chr8g0358101 45.333 75 41 0 139 213 682 756 4.26e-17 79.7
Msa0650280 MtrunA17_Chr3g0081011 37.079 89 56 0 130 218 548 636 6.09e-17 79.3
Msa0650280 MtrunA17_Chr4g0048791 32.414 145 87 3 2 137 406 548 1.23e-16 78.6
Msa0650280 MtrunA17_Chr4g0048791 35.088 114 70 2 95 208 709 818 7.94e-12 64.3
Msa0650280 MtrunA17_Chr8g0354281 50.000 70 35 0 140 209 554 623 1.32e-16 78.2
Msa0650280 MtrunA17_Chr8g0354331 45.070 71 39 0 139 209 318 388 1.34e-16 77.8
Msa0650280 MtrunA17_Chr2g0280791 35.172 145 70 3 12 137 398 537 1.79e-16 77.8
Msa0650280 MtrunA17_Chr2g0280791 38.554 83 51 0 139 221 738 820 4.52e-15 73.9
Msa0650280 MtrunA17_Chr4g0023221 39.773 88 51 1 139 226 948 1033 2.39e-16 77.8
Msa0650280 MtrunA17_Chr4g0048681 32.192 146 87 3 2 137 157 300 2.85e-16 77.4
Msa0650280 MtrunA17_Chr4g0048681 34.211 114 71 2 95 208 457 566 1.96e-12 65.9
Msa0650280 MtrunA17_Chr1g0205771 43.023 86 46 2 130 212 550 635 2.93e-16 77.4
Msa0650280 MtrunA17_Chr7g0236121 34.351 131 72 3 11 137 400 520 3.52e-16 77.0
Msa0650280 MtrunA17_Chr7g0236121 42.667 75 43 0 138 212 720 794 3.34e-13 68.6
Msa0650280 MtrunA17_Chr1g0154371 45.070 71 38 1 138 208 573 642 4.10e-16 77.0
Msa0650280 MtrunA17_Chr5g0428581 40.426 94 55 1 129 222 252 344 6.51e-16 75.9
Msa0650280 MtrunA17_Chr8g0354271 44.578 83 45 1 128 209 542 624 7.43e-16 76.3
Msa0650280 MtrunA17_Chr7g0236511 34.884 129 70 3 12 137 400 517 9.84e-16 75.9
Msa0650280 MtrunA17_Chr7g0236511 47.143 70 37 0 139 208 698 767 1.14e-13 69.7
Msa0650280 MtrunA17_Chr4g0048741 30.282 142 93 1 2 137 407 548 1.07e-15 75.9
Msa0650280 MtrunA17_Chr7g0236531 41.975 81 47 0 140 220 257 337 1.90e-15 74.3
Msa0650280 MtrunA17_Chr7g0236691 38.356 146 63 4 2 137 388 516 2.03e-15 74.7
Msa0650280 MtrunA17_Chr7g0236691 41.250 80 47 0 138 217 717 796 3.29e-13 68.6
Msa0650280 MtrunA17_Chr8g0354291 48.571 70 36 0 140 209 4 73 2.29e-15 69.3
Msa0650280 MtrunA17_Chr8g0354421 41.667 84 48 1 139 221 581 664 2.80e-15 74.3
Msa0650280 MtrunA17_Chr2g0280831 39.024 82 50 0 140 221 313 394 2.81e-15 73.9
Msa0650280 MtrunA17_Chr3g0081101 33.333 126 81 1 95 220 15 137 3.28e-15 70.5
Msa0650280 MtrunA17_Chr3g0084631 47.143 70 36 1 139 208 81 149 4.16e-15 70.9
Msa0650280 MtrunA17_Chr7g0236231 46.667 75 40 0 138 212 735 809 4.52e-15 73.9
Msa0650280 MtrunA17_Chr7g0236231 34.459 148 63 5 11 137 400 534 5.30e-15 73.6
Msa0650280 MtrunA17_Chr2g0280761 34.746 118 74 2 95 212 8 122 4.71e-15 69.7
Msa0650280 MtrunA17_Chr1g0206401 46.154 78 42 0 138 215 567 644 4.76e-15 73.6
Msa0650280 MtrunA17_Chr8g0340071 34.109 129 72 3 14 137 398 518 5.33e-15 73.6
Msa0650280 MtrunA17_Chr8g0340071 34.831 89 58 0 130 218 712 800 3.97e-13 68.2
Msa0650280 MtrunA17_Chr2g0280801 38.554 83 51 0 139 221 744 826 5.57e-15 73.6
Msa0650280 MtrunA17_Chr2g0280801 34.247 146 70 3 12 137 404 543 1.71e-14 72.0
Msa0650280 MtrunA17_Chr3g0081001 32.967 91 61 0 128 218 550 640 7.02e-15 73.2
Msa0650280 MtrunA17_Chr8g0354431 42.857 84 47 1 139 221 560 643 8.32e-15 73.2
Msa0650280 MtrunA17_Chr5g0428551 40.476 84 48 1 127 208 30 113 9.22e-15 69.3
Msa0650280 MtrunA17_Chr8g0354391 40.789 76 45 0 139 214 152 227 1.18e-14 70.9
Msa0650280 MtrunA17_Chr2g0280751 29.299 157 69 5 12 137 397 542 1.21e-14 72.8
Msa0650280 MtrunA17_Chr2g0280751 36.250 80 51 0 139 218 743 822 2.50e-12 65.9
Msa0650280 MtrunA17_Chr8g0354351 43.590 78 44 0 139 216 551 628 1.24e-14 72.4
Msa0650280 MtrunA17_Chr3g0084661 43.038 79 44 1 139 217 251 328 1.55e-14 71.6
Msa0650280 MtrunA17_Chr8g0340051 37.647 85 53 0 130 214 238 322 1.75e-14 71.6
Msa0650280 MtrunA17_Chr4g0055011 45.333 75 41 0 138 212 288 362 1.92e-14 71.6
Msa0650280 MtrunA17_Chr8g0357691 43.056 72 41 0 140 211 697 768 2.17e-14 72.0
Msa0650280 MtrunA17_Chr1g0206221 44.595 74 41 0 139 212 43 116 2.29e-14 68.2
Msa0650280 MtrunA17_Chr1g0206361 45.588 68 37 0 139 206 561 628 2.54e-14 71.6
Msa0650280 MtrunA17_Chr1g0154331 46.479 71 37 1 138 208 256 325 2.58e-14 70.9
Msa0650280 MtrunA17_Chr3g0084681 41.573 89 47 4 139 225 682 767 3.02e-14 71.2
Msa0650280 MtrunA17_Chr7g0236571 40.964 83 49 0 130 212 544 626 3.26e-14 71.2
Msa0650280 MtrunA17_Chr4g0048801 32.353 136 81 3 13 137 399 534 4.08e-14 71.2
Msa0650280 MtrunA17_Chr4g0048801 37.179 78 48 1 140 217 737 813 3.92e-12 65.1
Msa0650280 MtrunA17_Chr8g0340091 40.506 79 47 0 136 214 747 825 4.13e-14 70.9
Msa0650280 MtrunA17_Chr8g0340091 33.083 133 68 5 15 137 426 547 1.87e-13 68.9
Msa0650280 MtrunA17_Chr8g0354441 40.789 76 45 0 139 214 568 643 4.20e-14 70.9
Msa0650280 MtrunA17_Chr7g0236641 45.333 75 41 0 138 212 742 816 5.27e-14 70.9
Msa0650280 MtrunA17_Chr7g0236641 32.934 167 69 5 1 137 388 541 8.56e-13 67.0
Msa0650280 MtrunA17_Chr7g0236551 40.244 82 49 0 138 219 705 786 7.19e-14 70.5
Msa0650280 MtrunA17_Chr7g0236551 33.071 127 69 3 14 137 391 504 2.59e-12 65.9
Msa0650280 MtrunA17_Chr8g0361161 42.105 76 44 0 133 208 255 330 7.66e-14 69.7
Msa0650280 MtrunA17_Chr4g0048581 28.302 159 77 4 8 137 397 547 8.14e-14 70.1
Msa0650280 MtrunA17_Chr4g0048581 40.541 74 44 0 139 212 748 821 3.96e-13 68.2
Msa0650280 MtrunA17_Chr5g0393981 47.826 69 36 0 139 207 614 682 8.21e-14 70.1
Msa0650280 MtrunA17_Chr7g0236161 40.426 94 51 2 122 212 650 741 8.23e-14 70.1
Msa0650280 MtrunA17_Chr6g0474961 40.789 76 45 0 133 208 128 203 8.36e-14 68.6
Msa0650280 MtrunA17_Chr8g0340111 37.079 89 56 0 130 218 714 802 9.32e-14 70.1
Msa0650280 MtrunA17_Chr8g0340111 32.353 136 62 5 15 137 402 520 1.93e-12 66.2
Msa0650280 MtrunA17_Chr8g0360201 33.333 129 78 3 95 221 583 705 1.41e-13 69.3
Msa0650280 MtrunA17_Chr8g0340081 35.955 89 57 0 130 218 716 804 1.63e-13 69.3
Msa0650280 MtrunA17_Chr8g0340081 31.008 129 79 3 14 137 399 522 1.12e-11 63.9
Msa0650280 MtrunA17_Chr4g0048641 34.211 114 71 2 95 208 635 744 1.68e-13 69.3
Msa0650280 MtrunA17_Chr1g0206261 40.385 104 56 3 115 216 284 383 1.77e-13 68.9
Msa0650280 MtrunA17_Chr1g0206321 39.773 88 53 0 134 221 45 132 1.94e-13 65.9
Msa0650280 MtrunA17_Chr4g0020081 30.201 149 74 4 11 137 387 527 1.95e-13 68.9
Msa0650280 MtrunA17_Chr1g0206391 43.590 78 44 0 138 215 257 334 2.21e-13 68.6
Msa0650280 MtrunA17_Chr8g0357761 42.857 70 40 0 139 208 698 767 2.47e-13 68.9
Msa0650280 MtrunA17_Chr7g0236471 43.836 73 41 0 140 212 559 631 2.53e-13 68.6
Msa0650280 MtrunA17_Chr7g0236471 30.405 148 69 4 1 137 232 356 3.66e-12 65.1
Msa0650280 MtrunA17_Chr7g0236201 42.667 75 43 0 138 212 686 760 2.91e-13 68.6
Msa0650280 MtrunA17_Chr3g0098781 43.421 76 42 1 139 214 129 203 3.28e-13 66.6
Msa0650280 MtrunA17_Chr8g0357711 41.096 73 43 0 139 211 695 767 3.57e-13 68.2
Msa0650280 MtrunA17_Chr8g0357631 41.096 73 43 0 139 211 686 758 4.18e-13 68.2
Msa0650280 MtrunA17_Chr4g0023111 38.667 75 46 0 139 213 932 1006 4.60e-13 68.2
Msa0650280 MtrunA17_Chr1g0154311 45.070 71 38 1 138 208 568 637 5.40e-13 67.8
Msa0650280 MtrunA17_Chr2g0323231 37.333 75 47 0 139 213 396 470 5.79e-13 67.4
Msa0650280 MtrunA17_Chr1g0206551 42.254 71 40 1 138 208 253 322 6.40e-13 67.0
Msa0650280 MtrunA17_Chr3g0081031 33.654 104 67 1 112 215 545 646 6.46e-13 67.4
Msa0650280 MtrunA17_Chr6g0475091 38.202 89 48 1 127 208 781 869 7.20e-13 67.4
Msa0650280 MtrunA17_Chr1g0154351 43.662 71 39 1 138 208 575 644 9.60e-13 67.0
Msa0650280 MtrunA17_Chr8g0361141 40.789 76 45 0 133 208 727 802 1.24e-12 66.6
Msa0650280 MtrunA17_Chr6g0474901 37.079 89 49 1 127 208 766 854 1.27e-12 66.6
Msa0650280 MtrunA17_Chr6g0474991 38.202 89 48 1 127 208 63 151 1.38e-12 64.3
Msa0650280 MtrunA17_Chr3g0119041 39.726 73 44 0 139 211 558 630 1.39e-12 66.6
Msa0650280 MtrunA17_Chr8g0357661 38.571 70 43 0 139 208 81 150 2.10e-12 63.5
Msa0650280 MtrunA17_Chr6g0475181 36.559 93 53 1 122 208 11 103 2.46e-12 62.0
Msa0650280 MtrunA17_Chr6g0475111 35.000 100 61 2 115 213 783 879 3.04e-12 65.5
Msa0650280 MtrunA17_Chr1g0206331 37.349 83 48 1 139 217 553 635 3.30e-12 65.5
Msa0650280 MtrunA17_Chr2g0280731 38.272 81 50 0 139 219 767 847 4.06e-12 65.1
Msa0650280 MtrunA17_Chr1g0206231 40.541 74 44 0 139 212 564 637 4.30e-12 65.1
Msa0650280 MtrunA17_Chr6g0474811 38.202 89 48 1 127 208 773 861 4.62e-12 65.1
Msa0650280 MtrunA17_Chr3g0092281 42.647 68 35 1 74 137 1 68 4.72e-12 60.5
Msa0650280 MtrunA17_Chr7g0236651 35.955 89 55 1 138 224 702 790 4.81e-12 65.1
Msa0650280 MtrunA17_Chr1g0154321 39.362 94 43 3 138 218 585 677 5.00e-12 64.7
Msa0650280 MtrunA17_Chr1g0206561 42.857 70 39 1 139 208 548 616 5.12e-12 64.7
Msa0650280 MtrunA17_Chr5g0428511 44.444 72 38 2 138 208 1 71 6.57e-12 60.5
Msa0650280 MtrunA17_Chr1g0206421 45.205 73 40 0 148 220 452 524 6.66e-12 64.3
Msa0650280 MtrunA17_Chr4g0048781 34.211 114 71 2 95 208 165 274 6.85e-12 63.5
Msa0650280 MtrunA17_Chr6g0474871 37.079 89 49 1 127 208 765 853 6.90e-12 64.7
Msa0650280 MtrunA17_Chr8g0347571 36.842 95 56 2 115 208 766 857 1.06e-11 63.9
Msa0650280 MtrunA17_Chr6g0474861 37.079 89 49 1 127 208 486 574 1.11e-11 63.9
Msa0650280 MtrunA17_Chr8g0357651 40.580 69 41 0 140 208 689 757 1.20e-11 63.9
Msa0650280 MtrunA17_Chr4g0048661 34.211 114 71 2 95 208 214 323 1.33e-11 63.2
Msa0650280 MtrunA17_Chr6g0475131 40.580 69 41 0 140 208 229 297 2.21e-11 62.4
Msa0650280 MtrunA17_Chr4g0048651 33.708 89 59 0 2 90 413 501 2.37e-11 62.8
Msa0650280 MtrunA17_Chr5g0426941 42.857 70 39 1 139 208 558 626 3.48e-11 62.4
Msa0650280 MtrunA17_Chr6g0475201 40.580 69 41 0 140 208 794 862 5.84e-11 61.6
Msa0650280 MtrunA17_Chr6g0474851 35.955 89 50 1 127 208 128 216 6.41e-11 60.5
Msa0650280 MtrunA17_Chr8g0361311 37.143 70 44 0 2 71 384 453 6.67e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0650280 AT4G21380.1 34.375 160 73 2 2 137 390 541 4.82e-23 97.4
Msa0650280 AT4G21380.1 52.778 72 31 1 140 208 744 815 3.69e-16 77.4
Msa0650280 AT4G21380.2 34.375 160 73 2 2 137 390 541 5.40e-23 97.1
Msa0650280 AT4G27290.2 38.194 144 78 3 2 137 386 526 9.82e-23 96.7
Msa0650280 AT4G23180.1 45.570 79 43 0 130 208 556 634 1.29e-20 90.5
Msa0650280 AT1G65800.1 33.962 159 74 3 2 137 388 538 3.20e-20 89.4
Msa0650280 AT1G65800.1 44.000 75 38 1 138 208 739 813 5.58e-15 73.9
Msa0650280 AT1G65800.2 33.962 159 74 3 2 137 388 538 3.52e-20 89.0
Msa0650280 AT4G23150.1 43.333 90 51 0 139 228 553 642 1.35e-19 87.4
Msa0650280 AT1G11330.2 32.258 124 81 1 95 218 700 820 1.94e-18 84.0
Msa0650280 AT1G11330.2 29.655 145 71 3 12 137 407 539 3.75e-13 68.6
Msa0650280 AT1G11330.1 32.258 124 81 1 95 218 698 818 1.97e-18 84.0
Msa0650280 AT1G11330.1 29.371 143 72 3 12 137 407 537 3.75e-13 68.6
Msa0650280 AT4G23270.2 41.463 82 48 0 136 217 541 622 2.35e-18 84.0
Msa0650280 AT4G23270.1 41.463 82 48 0 136 217 541 622 2.35e-18 84.0
Msa0650280 AT4G23270.3 41.463 82 48 0 136 217 541 622 2.71e-18 83.6
Msa0650280 AT3G45860.1 37.069 116 69 2 115 227 546 660 2.97e-18 83.6
Msa0650280 AT1G11350.1 42.500 80 46 0 139 218 729 808 7.51e-18 82.4
Msa0650280 AT1G11350.1 28.767 146 71 3 12 137 395 527 3.43e-13 68.9
Msa0650280 AT4G23140.1 40.000 90 54 0 139 228 568 657 2.12e-17 80.9
Msa0650280 AT4G11530.1 42.553 94 53 1 115 208 547 639 2.20e-17 80.9
Msa0650280 AT4G23140.2 40.000 90 54 0 139 228 574 663 2.23e-17 80.9
Msa0650280 AT4G27300.1 37.500 136 75 2 2 137 390 515 3.48e-17 80.5
Msa0650280 AT4G27300.1 45.946 74 38 2 140 212 718 790 8.44e-13 67.8
Msa0650280 AT1G11340.2 34.043 141 71 4 14 137 463 598 6.44e-17 79.7
Msa0650280 AT1G11340.3 34.043 141 71 4 14 137 463 598 6.74e-17 79.7
Msa0650280 AT1G11340.1 34.043 141 71 4 14 137 395 530 7.34e-17 79.3
Msa0650280 AT4G23200.1 42.466 73 42 0 136 208 551 623 7.58e-17 79.3
Msa0650280 AT4G23220.1 41.096 73 43 0 136 208 551 623 8.49e-17 79.3
Msa0650280 AT4G23160.1 40.449 89 53 0 140 228 577 665 9.80e-17 79.0
Msa0650280 AT4G23130.1 41.573 89 51 1 130 217 548 636 1.53e-16 78.6
Msa0650280 AT4G23130.2 41.573 89 51 1 130 217 552 640 1.53e-16 78.6
Msa0650280 AT4G23230.1 43.038 79 45 0 130 208 545 623 1.89e-16 78.2
Msa0650280 AT4G23280.3 38.554 83 51 0 136 218 509 591 2.59e-16 77.8
Msa0650280 AT4G23280.1 38.554 83 51 0 136 218 559 641 2.95e-16 77.8
Msa0650280 AT4G23280.2 38.554 83 51 0 136 218 557 639 3.03e-16 77.8
Msa0650280 AT1G61370.2 33.077 130 72 4 14 137 245 365 3.06e-16 77.8
Msa0650280 AT1G61370.2 36.264 91 57 1 128 218 556 645 4.25e-11 62.4
Msa0650280 AT1G61370.1 33.077 130 72 4 14 137 396 516 3.42e-16 77.4
Msa0650280 AT1G61370.1 36.264 91 57 1 128 218 707 796 4.11e-11 62.8
Msa0650280 AT4G11480.3 37.190 121 74 2 94 214 499 617 3.58e-16 77.4
Msa0650280 AT4G11480.4 37.190 121 74 2 94 214 496 614 3.61e-16 77.4
Msa0650280 AT1G61400.2 37.209 129 69 2 12 137 396 515 3.70e-16 77.4
Msa0650280 AT4G11480.1 37.190 121 74 2 94 214 504 622 3.72e-16 77.4
Msa0650280 AT1G61400.1 37.209 129 69 2 12 137 396 515 3.73e-16 77.4
Msa0650280 AT4G11490.1 40.909 88 49 1 121 208 524 608 5.39e-16 77.0
Msa0650280 AT1G61380.1 32.283 127 75 1 11 137 388 503 5.43e-16 77.0
Msa0650280 AT1G61380.2 32.283 127 75 1 11 137 241 356 5.76e-16 76.6
Msa0650280 AT1G11410.2 32.450 151 71 4 11 137 280 423 6.17e-16 76.6
Msa0650280 AT1G11410.2 40.278 72 42 1 140 210 624 695 1.01e-11 64.3
Msa0650280 AT1G11410.1 32.450 151 71 4 11 137 395 538 6.51e-16 76.6
Msa0650280 AT1G11410.1 40.278 72 42 1 140 210 739 810 9.60e-12 64.3
Msa0650280 AT1G61420.5 35.338 133 72 5 12 137 236 361 6.58e-16 76.6
Msa0650280 AT1G11410.4 32.450 151 71 4 11 137 402 545 6.97e-16 76.6
Msa0650280 AT1G11410.4 40.278 72 42 1 140 210 746 817 9.53e-12 64.3
Msa0650280 AT1G11410.3 32.450 151 71 4 11 137 371 514 7.04e-16 76.6
Msa0650280 AT1G11410.3 40.278 72 42 1 140 210 715 786 9.72e-12 64.3
Msa0650280 AT1G61420.2 35.338 133 72 5 12 137 386 511 7.72e-16 76.6
Msa0650280 AT1G61420.4 35.338 133 72 5 12 137 386 511 7.72e-16 76.6
Msa0650280 AT1G61480.1 37.778 135 66 6 12 137 386 511 9.24e-16 76.3
Msa0650280 AT1G61480.1 37.805 82 48 2 139 218 713 793 3.13e-11 62.8
Msa0650280 AT1G61440.2 38.636 132 67 5 12 139 379 500 1.28e-15 75.9
Msa0650280 AT4G03230.8 44.000 75 41 1 139 212 749 823 1.76e-15 75.5
Msa0650280 AT4G03230.8 29.193 161 89 4 2 137 387 547 8.45e-11 61.6
Msa0650280 AT4G03230.5 44.000 75 41 1 139 212 835 909 1.87e-15 75.5
Msa0650280 AT4G03230.2 44.000 75 41 1 139 212 807 881 1.95e-15 75.5
Msa0650280 AT4G03230.6 44.000 75 41 1 139 212 807 881 1.95e-15 75.5
Msa0650280 AT4G03230.4 44.000 75 41 1 139 212 907 981 2.10e-15 75.5
Msa0650280 AT4G03230.1 44.000 75 41 1 139 212 907 981 2.10e-15 75.5
Msa0650280 AT1G61430.1 33.835 133 72 3 12 139 385 506 2.14e-15 75.1
Msa0650280 AT1G61430.1 36.364 99 60 2 129 225 699 796 2.85e-11 63.2
Msa0650280 AT1G61420.3 34.351 131 74 5 12 137 236 359 2.17e-15 75.1
Msa0650280 AT4G03230.3 44.000 75 41 1 139 212 742 816 2.21e-15 75.1
Msa0650280 AT4G03230.7 44.000 75 41 1 139 212 750 824 2.21e-15 75.1
Msa0650280 AT1G61440.1 38.462 130 61 5 12 137 379 493 2.30e-15 75.1
Msa0650280 AT1G61440.3 38.462 130 66 5 12 137 379 498 2.51e-15 75.1
Msa0650280 AT1G61420.1 34.351 131 74 5 12 137 386 509 2.93e-15 74.7
Msa0650280 AT4G00970.1 45.714 70 37 1 140 208 564 633 3.15e-15 74.7
Msa0650280 AT1G61430.5 33.835 133 72 3 12 139 385 506 3.42e-15 74.7
Msa0650280 AT1G65790.1 41.667 84 45 1 138 217 735 818 3.68e-15 74.7
Msa0650280 AT1G65790.1 30.818 159 79 2 2 137 384 534 2.85e-13 68.9
Msa0650280 AT1G61430.11 33.588 131 71 3 12 137 362 481 3.93e-15 74.3
Msa0650280 AT1G61430.11 36.364 99 60 2 129 225 673 770 2.91e-11 63.2
Msa0650280 AT1G61430.12 33.588 131 71 3 12 137 362 481 3.93e-15 74.3
Msa0650280 AT1G61430.12 36.364 99 60 2 129 225 673 770 2.91e-11 63.2
Msa0650280 AT1G61430.13 33.588 131 71 3 12 137 362 481 3.93e-15 74.3
Msa0650280 AT1G61430.13 36.364 99 60 2 129 225 673 770 2.91e-11 63.2
Msa0650280 AT4G21390.1 45.455 77 41 1 139 214 745 821 4.09e-15 74.3
Msa0650280 AT4G21390.1 30.380 158 68 7 11 137 398 544 2.44e-12 66.2
Msa0650280 AT1G61430.9 33.588 131 71 3 12 137 385 504 4.61e-15 74.3
Msa0650280 AT1G61430.9 36.364 99 60 2 129 225 696 793 3.01e-11 63.2
Msa0650280 AT1G61430.4 33.588 131 71 3 12 137 362 481 4.77e-15 73.9
Msa0650280 AT1G61430.3 33.588 131 71 3 12 137 394 513 4.82e-15 73.9
Msa0650280 AT1G61430.10 33.588 131 71 3 12 137 362 481 5.13e-15 73.9
Msa0650280 AT1G61430.2 33.588 131 71 3 12 137 385 504 5.27e-15 73.9
Msa0650280 AT1G61430.6 33.588 131 71 3 12 137 385 504 5.27e-15 73.9
Msa0650280 AT1G61430.8 33.588 131 71 3 12 137 385 504 5.91e-15 73.9
Msa0650280 AT1G61430.7 33.588 131 71 3 12 137 385 504 5.91e-15 73.9
Msa0650280 AT1G61550.1 36.842 133 68 6 12 137 381 504 1.00e-14 73.2
Msa0650280 AT4G23300.1 41.250 80 45 1 136 213 570 649 1.26e-14 72.8
Msa0650280 AT1G11300.1 37.975 79 49 0 140 218 720 798 1.32e-14 72.8
Msa0650280 AT1G11300.1 29.787 141 75 3 10 137 395 524 4.67e-13 68.2
Msa0650280 AT1G11300.2 37.975 79 49 0 140 218 705 783 1.35e-14 72.8
Msa0650280 AT4G04540.4 39.604 101 57 3 124 224 523 619 1.59e-14 72.4
Msa0650280 AT4G04540.1 39.604 101 57 3 124 224 552 648 1.67e-14 72.4
Msa0650280 AT4G23190.1 42.105 76 44 0 136 211 567 642 2.82e-14 72.0
Msa0650280 AT4G23190.3 42.105 76 44 0 136 211 489 564 2.85e-14 71.6
Msa0650280 AT4G23190.4 42.105 76 44 0 136 211 489 564 2.85e-14 71.6
Msa0650280 AT4G00960.2 31.034 116 76 2 96 210 141 253 4.03e-14 70.1
Msa0650280 AT1G61360.1 32.353 136 74 4 11 137 387 513 4.64e-14 71.2
Msa0650280 AT1G61360.2 32.353 136 74 4 11 137 306 432 4.84e-14 71.2
Msa0650280 AT1G61360.3 32.353 136 74 4 11 137 306 432 4.84e-14 71.2
Msa0650280 AT1G61360.4 32.353 136 74 4 11 137 306 432 4.84e-14 71.2
Msa0650280 AT4G00960.3 40.278 72 42 1 140 210 189 260 5.07e-14 70.1
Msa0650280 AT1G11280.3 31.496 127 75 1 11 137 394 508 6.20e-14 70.9
Msa0650280 AT1G11280.4 31.496 127 75 1 11 137 404 518 6.27e-14 70.9
Msa0650280 AT4G00960.1 40.278 72 42 1 140 210 276 347 6.52e-14 70.5
Msa0650280 AT4G23210.3 43.662 71 40 0 136 206 570 640 7.14e-14 70.9
Msa0650280 AT4G11470.1 34.167 120 77 2 94 213 514 631 9.90e-14 70.1
Msa0650280 AT4G11470.2 34.167 120 77 2 94 213 519 636 9.92e-14 70.1
Msa0650280 AT4G23310.2 35.632 87 54 1 136 222 683 767 1.02e-13 70.5
Msa0650280 AT4G23310.1 35.632 87 54 1 136 222 723 807 1.09e-13 70.1
Msa0650280 AT1G61390.2 28.986 138 76 3 11 137 241 367 1.46e-13 69.7
Msa0650280 AT1G61390.1 28.986 138 76 3 11 137 409 535 1.66e-13 69.7
Msa0650280 AT1G61490.3 37.405 131 66 7 12 137 236 355 1.83e-13 69.3
Msa0650280 AT1G61490.3 32.258 93 62 1 129 221 547 638 9.36e-12 64.3
Msa0650280 AT1G61490.4 37.405 131 66 7 12 137 386 505 1.92e-13 69.3
Msa0650280 AT1G61490.4 32.258 93 62 1 129 221 697 788 8.81e-12 64.7
Msa0650280 AT1G61490.1 37.405 131 66 7 12 137 386 505 1.92e-13 69.3
Msa0650280 AT1G61490.1 32.258 93 62 1 129 221 697 788 8.81e-12 64.7
Msa0650280 AT1G61490.2 37.405 131 66 7 12 137 386 505 1.92e-13 69.3
Msa0650280 AT1G61490.2 32.258 93 62 1 129 221 697 788 8.81e-12 64.7
Msa0650280 AT1G61490.5 37.405 131 66 7 12 137 386 505 1.92e-13 69.3
Msa0650280 AT1G61490.5 32.258 93 62 1 129 221 697 788 8.81e-12 64.7
Msa0650280 AT1G61490.6 38.168 131 65 7 12 137 360 479 2.00e-13 69.3
Msa0650280 AT1G61490.6 32.258 93 62 1 129 221 671 762 9.43e-12 64.3
Msa0650280 AT1G61490.7 38.168 131 65 7 12 137 360 479 2.00e-13 69.3
Msa0650280 AT1G61490.7 32.258 93 62 1 129 221 671 762 9.43e-12 64.3
Msa0650280 AT1G65790.3 30.818 159 79 2 2 137 384 534 2.71e-13 68.9
Msa0650280 AT1G65790.2 30.818 159 79 2 2 137 384 534 2.71e-13 68.9
Msa0650280 AT1G11303.1 35.443 79 51 0 140 218 720 798 2.89e-13 68.9
Msa0650280 AT1G11303.1 29.787 141 75 2 10 137 395 524 3.80e-13 68.6
Msa0650280 AT4G04570.1 39.362 94 55 2 124 217 547 638 3.72e-13 68.6
Msa0650280 AT1G11330.3 29.655 145 71 3 12 137 407 539 4.57e-13 68.2
Msa0650280 AT4G05200.1 34.188 117 74 2 95 211 523 636 6.01e-13 67.8
Msa0650280 AT4G05200.2 34.188 117 74 2 95 211 541 654 6.17e-13 67.8
Msa0650280 AT1G61500.2 34.615 130 71 5 12 137 369 488 7.20e-13 67.8
Msa0650280 AT1G61500.2 39.189 74 44 1 136 209 687 759 1.80e-11 63.5
Msa0650280 AT4G23240.2 40.506 79 47 0 136 214 243 321 7.34e-13 67.4
Msa0650280 AT1G11280.1 32.847 137 72 6 11 137 404 530 7.36e-13 67.8
Msa0650280 AT1G61500.3 34.615 130 71 5 12 137 392 511 7.45e-13 67.8
Msa0650280 AT1G61500.3 39.189 74 44 1 136 209 710 782 1.94e-11 63.5
Msa0650280 AT1G61500.1 34.615 130 71 5 12 137 387 506 7.95e-13 67.8
Msa0650280 AT1G61500.1 39.189 74 44 1 136 209 705 777 2.01e-11 63.5
Msa0650280 AT1G11280.2 32.847 137 72 6 11 137 394 520 8.06e-13 67.8
Msa0650280 AT4G23320.2 40.789 76 45 0 136 211 398 473 8.40e-13 67.4
Msa0650280 AT4G23320.1 40.789 76 45 0 136 211 398 473 8.40e-13 67.4
Msa0650280 AT1G11280.5 32.847 137 72 6 11 137 394 520 8.74e-13 67.4
Msa0650280 AT4G23320.3 40.789 76 45 0 136 211 419 494 9.83e-13 67.4
Msa0650280 AT1G61460.1 34.615 130 69 5 12 137 352 469 9.89e-13 67.4
Msa0650280 AT4G11460.1 38.961 77 47 0 136 212 564 640 1.01e-12 67.4
Msa0650280 AT4G11460.3 38.961 77 47 0 136 212 561 637 1.07e-12 67.4
Msa0650280 AT4G11460.2 38.961 77 47 0 136 212 486 562 1.08e-12 67.0
Msa0650280 AT4G23240.1 40.506 79 47 0 136 214 550 628 1.38e-12 67.0
Msa0650280 AT1G70740.2 36.170 94 53 1 136 222 275 368 2.24e-12 65.9
Msa0650280 AT4G21390.2 30.380 158 68 7 11 137 398 544 3.01e-12 65.9
Msa0650280 AT4G38830.1 36.735 98 54 3 115 208 540 633 3.05e-12 65.9
Msa0650280 AT1G61610.1 38.272 81 50 0 139 219 741 821 3.26e-12 65.9
Msa0650280 AT1G61610.1 28.966 145 77 4 12 137 403 540 1.02e-11 64.3
Msa0650280 AT4G21400.2 37.895 95 58 1 115 209 546 639 4.28e-12 65.5
Msa0650280 AT4G21400.8 37.895 95 58 1 115 209 447 540 4.31e-12 65.5
Msa0650280 AT4G21400.1 37.895 95 58 1 115 209 558 651 4.35e-12 65.5
Msa0650280 AT4G21400.7 37.895 95 58 1 115 209 548 641 5.63e-12 65.1
Msa0650280 AT4G23290.1 40.000 75 45 0 140 214 539 613 5.83e-12 65.1
Msa0650280 AT4G23290.2 40.000 75 45 0 140 214 582 656 6.11e-12 65.1
Msa0650280 AT4G04510.2 37.864 103 61 3 123 225 541 640 9.17e-12 64.3
Msa0650280 AT4G04510.1 37.864 103 61 3 123 225 539 638 9.42e-12 64.3
Msa0650280 AT1G61610.2 28.966 145 77 4 12 137 403 540 1.15e-11 64.3
Msa0650280 AT1G70740.1 36.170 94 51 2 138 222 275 368 1.34e-11 63.9
Msa0650280 AT4G23250.3 38.158 76 47 0 136 211 569 644 3.04e-11 62.8
Msa0650280 AT4G23250.1 38.158 76 47 0 136 211 574 649 3.49e-11 62.8
Msa0650280 AT4G23250.2 38.158 76 47 0 136 211 569 644 3.82e-11 62.8
Msa0650280 AT4G21410.1 43.478 69 38 1 140 208 454 521 5.47e-11 62.0
Msa0650280 AT4G21410.3 43.478 69 38 1 140 208 579 646 6.71e-11 62.0

Find 67 sgRNAs with CRISPR-Local

Find 264 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAATTTAGGCATGGACATTC+TGG 0.222610 4_3:+57074488 Msa0650280:intron
TTCTCAGAGAAGAACAAAAT+TGG 0.242336 4_3:+57073442 Msa0650280:CDS
AAAATTGGAGAAGGTGGTTT+TGG 0.253032 4_3:+57073457 Msa0650280:CDS
AGGATGCCTGCTTCAGAATT+AGG 0.279027 4_3:+57073000 Msa0650280:CDS
ATCGATATCAAACTTATTCC+AGG 0.342688 4_3:+57072955 Msa0650280:CDS
ATTACAGTTTCTGTAGCTTT+GGG 0.347104 4_3:+57073182 Msa0650280:CDS
AATTACAGTTTCTGTAGCTT+TGG 0.351833 4_3:+57073181 Msa0650280:CDS
ACCAAAGTATATGTAGTATC+TGG 0.360966 4_3:-57072808 None:intergenic
TGAGAGACACATGGACGATA+TGG 0.362993 4_3:+57073372 Msa0650280:CDS
GTGGGCAATTTCTATATATC+AGG 0.383893 4_3:+57072980 Msa0650280:CDS
AGTGCTCGGTGAAAATCAAT+AGG 0.393901 4_3:+57074783 Msa0650280:three_prime_UTR
GCTGATGTGATTCTAATGTT+AGG 0.404259 4_3:+57074640 Msa0650280:CDS
AGTGGTTGTGTTATGTGGTT+TGG 0.418186 4_3:+57072925 Msa0650280:CDS
GTAGTAAAACCTGGCTCCTT+AGG 0.420102 4_3:-57074688 None:intergenic
CAGGAAGTGGTTGTGTTATG+TGG 0.453364 4_3:+57072920 Msa0650280:CDS
TCCAGATACTACATATACTT+TGG 0.461489 4_3:+57072807 Msa0650280:five_prime_UTR
AGACTCAGGAGGAGCATTGT+TGG 0.462054 4_3:+57073236 Msa0650280:CDS
ATCAAACTTATTCCAGGTGG+TGG 0.463520 4_3:+57072961 Msa0650280:CDS
AAGAACAAAATTGGAGAAGG+TGG 0.466263 4_3:+57073451 Msa0650280:CDS
TATTGGATTACCAAATATAC+AGG 0.470556 4_3:-57073481 None:intergenic
TTTGAGTCAATTATCTGTAA+AGG 0.475904 4_3:-57074523 None:intergenic
AACAATGTGGAGGAAAATGC+TGG 0.486447 4_3:+57072851 Msa0650280:five_prime_UTR
AATATAAGTGGCGCAGGAAG+TGG 0.487384 4_3:+57072907 Msa0650280:CDS
TGTATTTGTATAAGCCATGC+AGG 0.489272 4_3:-57072884 None:intergenic
TTAGATGAGCCTAAGGAGCC+AGG 0.505494 4_3:+57074679 Msa0650280:CDS
GATGATATTAGATGAGCCTA+AGG 0.510476 4_3:+57074672 Msa0650280:CDS
TATTCACCTAATTCTGAAGC+AGG 0.515246 4_3:-57073006 None:intergenic
AATAGTGACTTTGTTCCCCA+TGG 0.515436 4_3:-57074841 None:intergenic
AGATACTACATATACTTTGG+TGG 0.517466 4_3:+57072810 Msa0650280:five_prime_UTR
ACCGATACATATTTCAGTAA+AGG 0.518159 4_3:+57074808 Msa0650280:three_prime_UTR
TTGTTGACAAATCAAGCAAT+GGG 0.519286 4_3:-57073399 None:intergenic
AGAATCTGCTCAAGCTCAAG+TGG 0.526022 4_3:+57074717 Msa0650280:CDS
CTGATGTGATTCTAATGTTA+GGG 0.529522 4_3:+57074641 Msa0650280:CDS
GTAAAGGAGGTATAATTCCA+TGG 0.531438 4_3:+57074824 Msa0650280:three_prime_UTR
TGCAACAATATCCAGAGGTT+AGG 0.534417 4_3:+57074608 Msa0650280:CDS
TATAGAAATTGCCCACCACC+TGG 0.534593 4_3:-57072973 None:intergenic
ATTGTTGACAAATCAAGCAA+TGG 0.539609 4_3:-57073400 None:intergenic
TCCTTTACTGAAATATGTAT+CGG 0.544653 4_3:-57074809 None:intergenic
TATACAAATACAAATATAAG+TGG 0.545565 4_3:+57072895 Msa0650280:CDS
TAAAGGAGGTATAATTCCAT+GGG 0.546431 4_3:+57074825 Msa0650280:three_prime_UTR
ACTTTGGTGGATGAGAGTAT+TGG 0.547121 4_3:+57072823 Msa0650280:five_prime_UTR
AATACAAATATAAGTGGCGC+AGG 0.555833 4_3:+57072901 Msa0650280:CDS
GCCATGGTAGGCCTAACCTC+TGG 0.556054 4_3:-57074619 None:intergenic
TCTTTCCTCGTAGTAAAACC+TGG 0.569552 4_3:-57074697 None:intergenic
GAGAAGAACAAAATTGGAGA+AGG 0.572502 4_3:+57073448 Msa0650280:CDS
CTAGGGAAGTCAAAGACAGA+AGG 0.574522 4_3:+57073343 Msa0650280:intron
CTCTGAGAAATTGTCAGTAG+CGG 0.587907 4_3:-57073428 None:intergenic
CTGGAATAATTGTTCCTGCA+TGG 0.594186 4_3:+57072870 Msa0650280:exon
CTGCTCAAGCTCAAGTGGGA+AGG 0.595563 4_3:+57074722 Msa0650280:CDS
GCATGGACATTCTGGAAACA+TGG 0.595714 4_3:+57074496 Msa0650280:CDS
ATAGTATTGACGATGAGCAC+AGG 0.605378 4_3:+57073135 Msa0650280:CDS
CATTAGAATCACATCAGCCA+TGG 0.617577 4_3:-57074635 None:intergenic
TCAAACTTATTCCAGGTGGT+GGG 0.621411 4_3:+57072962 Msa0650280:CDS
AGAATCACATCAGCCATGGT+AGG 0.625241 4_3:-57074631 None:intergenic
GAATCTGCTCAAGCTCAAGT+GGG 0.635245 4_3:+57074718 Msa0650280:CDS
GATACATATTTCAGTAAAGG+AGG 0.635495 4_3:+57074811 Msa0650280:three_prime_UTR
TCCAGAGGTTAGGCCTACCA+TGG 0.667119 4_3:+57074618 Msa0650280:CDS
GTATTGACGATGAGCACAGG+AGG 0.677439 4_3:+57073138 Msa0650280:CDS
GTATCGCGTTGCATCCACGT+TGG 0.682117 4_3:+57074574 Msa0650280:CDS
GATAATTGACTCAAACATCG+TGG 0.694407 4_3:+57074531 Msa0650280:CDS
ATGTGTGCAACAATATCCAG+AGG 0.698315 4_3:+57074603 Msa0650280:CDS
ATTGGTCTAGAACAATGTGG+AGG 0.702423 4_3:+57072841 Msa0650280:five_prime_UTR
AGGCAACTATGAGAGACACA+TGG 0.705863 4_3:+57073363 Msa0650280:CDS
GATATCAAACTTATTCCAGG+TGG 0.714312 4_3:+57072958 Msa0650280:CDS
AGTATTGGTCTAGAACAATG+TGG 0.719748 4_3:+57072838 Msa0650280:five_prime_UTR
AAAGGAGGTATAATTCCATG+GGG 0.743328 4_3:+57074826 Msa0650280:three_prime_UTR
GCACACATAAGAGTCCAACG+TGG 0.855010 4_3:-57074588 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATACAAATACAAATATAAG+TGG + chr4_3:57072895-57072914 Msa0650280:CDS 15.0%
!! GAATATTAAAAGGAAAAAAT+TGG - chr4_3:57073046-57073065 None:intergenic 15.0%
!! AATTCTCAAAGAATATTAAA+AGG - chr4_3:57073056-57073075 None:intergenic 15.0%
!! TAATTACATTCATATAGTAA+TGG - chr4_3:57073565-57073584 None:intergenic 15.0%
!!! AAATAAACTATGATTTTAGA+TGG - chr4_3:57074161-57074180 None:intergenic 15.0%
!!! ATTTTCGTCTTTTATAATTT+AGG + chr4_3:57074474-57074493 Msa0650280:intron 15.0%
!! TATACAAATACAAATATAAG+TGG + chr4_3:57072895-57072914 Msa0650280:CDS 15.0%
!! GAATATTAAAAGGAAAAAAT+TGG - chr4_3:57073046-57073065 None:intergenic 15.0%
!! AATTCTCAAAGAATATTAAA+AGG - chr4_3:57073056-57073075 None:intergenic 15.0%
!! TAATTACATTCATATAGTAA+TGG - chr4_3:57073565-57073584 None:intergenic 15.0%
!!! AAATAAACTATGATTTTAGA+TGG - chr4_3:57074161-57074180 None:intergenic 15.0%
!!! ATTTTCGTCTTTTATAATTT+AGG + chr4_3:57074474-57074493 Msa0650280:intron 15.0%
!! TATTAAAAGGAAAAAATTGG+TGG - chr4_3:57073043-57073062 None:intergenic 20.0%
!!! ACATTTTTTCATTCAAATGT+CGG - chr4_3:57073282-57073301 None:intergenic 20.0%
!! TTTGAATGAAAAAATGTCAT+TGG + chr4_3:57073285-57073304 Msa0650280:intron 20.0%
!!! TTTTTTTCTTTCCATTTTCT+AGG + chr4_3:57073325-57073344 Msa0650280:intron 20.0%
!!! TTTTTTCTTTCCATTTTCTA+GGG + chr4_3:57073326-57073345 Msa0650280:intron 20.0%
!!! TATATTTGGTAATCCAATAT+TGG + chr4_3:57073485-57073504 Msa0650280:intron 20.0%
!! AATGTAATTAATGATTATCC+AGG + chr4_3:57073575-57073594 Msa0650280:intron 20.0%
!! ATGTAATTAATGATTATCCA+GGG + chr4_3:57073576-57073595 Msa0650280:intron 20.0%
!!! CAATAAGTTTTACAAGATTT+CGG - chr4_3:57073710-57073729 None:intergenic 20.0%
!!! AATCCAAAAATATCAGATTT+TGG + chr4_3:57074060-57074079 Msa0650280:intron 20.0%
!!! AATCCAAAATCTGATATTTT+TGG - chr4_3:57074066-57074085 None:intergenic 20.0%
!!! AAAAATATCAGATTTTGGAT+TGG + chr4_3:57074065-57074084 Msa0650280:intron 20.0%
!! TATTAAAAGGAAAAAATTGG+TGG - chr4_3:57073043-57073062 None:intergenic 20.0%
!!! ACATTTTTTCATTCAAATGT+CGG - chr4_3:57073282-57073301 None:intergenic 20.0%
!! TTTGAATGAAAAAATGTCAT+TGG + chr4_3:57073285-57073304 Msa0650280:intron 20.0%
!!! TTTTTTTCTTTCCATTTTCT+AGG + chr4_3:57073325-57073344 Msa0650280:intron 20.0%
!!! TTTTTTCTTTCCATTTTCTA+GGG + chr4_3:57073326-57073345 Msa0650280:intron 20.0%
!!! TATATTTGGTAATCCAATAT+TGG + chr4_3:57073485-57073504 Msa0650280:intron 20.0%
!! AATGTAATTAATGATTATCC+AGG + chr4_3:57073575-57073594 Msa0650280:intron 20.0%
!! ATGTAATTAATGATTATCCA+GGG + chr4_3:57073576-57073595 Msa0650280:intron 20.0%
!!! CAATAAGTTTTACAAGATTT+CGG - chr4_3:57073710-57073729 None:intergenic 20.0%
!!! AATCCAAAAATATCAGATTT+TGG + chr4_3:57074060-57074079 Msa0650280:intron 20.0%
!!! AATCCAAAATCTGATATTTT+TGG - chr4_3:57074066-57074085 None:intergenic 20.0%
!!! AAAAATATCAGATTTTGGAT+TGG + chr4_3:57074065-57074084 Msa0650280:intron 20.0%
!! TTAAGTCTTGTAATTGAAAG+TGG + chr4_3:57073075-57073094 Msa0650280:intron 25.0%
!!! AAGTTGCTTTGTTTAGATAA+AGG + chr4_3:57073107-57073126 Msa0650280:intron 25.0%
!!! TTTATTTTTTCTACAGACTC+AGG + chr4_3:57073222-57073241 Msa0650280:CDS 25.0%
! TATTGGATTACCAAATATAC+AGG - chr4_3:57073484-57073503 None:intergenic 25.0%
! TAGAAATCATACTCCAATAT+TGG - chr4_3:57073501-57073520 None:intergenic 25.0%
! CGAAATCTTGTAAAACTTAT+TGG + chr4_3:57073708-57073727 Msa0650280:intron 25.0%
!! AGTACTAGTTTATGAATACA+TGG + chr4_3:57073755-57073774 Msa0650280:intron 25.0%
! TAGTAATTCCACATATTATG+TGG - chr4_3:57073951-57073970 None:intergenic 25.0%
! ATAATATGTGGAATTACTAG+AGG + chr4_3:57073952-57073971 Msa0650280:intron 25.0%
! TAATATGTGGAATTACTAGA+GGG + chr4_3:57073953-57073972 Msa0650280:intron 25.0%
! TTACTGTTAGAGATTATATG+TGG + chr4_3:57074321-57074340 Msa0650280:intron 25.0%
! TACTGTTAGAGATTATATGT+GGG + chr4_3:57074322-57074341 Msa0650280:intron 25.0%
! TTTGAGTCAATTATCTGTAA+AGG - chr4_3:57074526-57074545 None:intergenic 25.0%
! TCCTTTACTGAAATATGTAT+CGG - chr4_3:57074812-57074831 None:intergenic 25.0%
!! TTAAGTCTTGTAATTGAAAG+TGG + chr4_3:57073075-57073094 Msa0650280:intron 25.0%
!!! AAGTTGCTTTGTTTAGATAA+AGG + chr4_3:57073107-57073126 Msa0650280:intron 25.0%
!!! TTTATTTTTTCTACAGACTC+AGG + chr4_3:57073222-57073241 Msa0650280:CDS 25.0%
! TATTGGATTACCAAATATAC+AGG - chr4_3:57073484-57073503 None:intergenic 25.0%
! TAGAAATCATACTCCAATAT+TGG - chr4_3:57073501-57073520 None:intergenic 25.0%
! CGAAATCTTGTAAAACTTAT+TGG + chr4_3:57073708-57073727 Msa0650280:intron 25.0%
!! AGTACTAGTTTATGAATACA+TGG + chr4_3:57073755-57073774 Msa0650280:intron 25.0%
! TAGTAATTCCACATATTATG+TGG - chr4_3:57073951-57073970 None:intergenic 25.0%
! ATAATATGTGGAATTACTAG+AGG + chr4_3:57073952-57073971 Msa0650280:intron 25.0%
! TAATATGTGGAATTACTAGA+GGG + chr4_3:57073953-57073972 Msa0650280:intron 25.0%
! TTACTGTTAGAGATTATATG+TGG + chr4_3:57074321-57074340 Msa0650280:intron 25.0%
! TACTGTTAGAGATTATATGT+GGG + chr4_3:57074322-57074341 Msa0650280:intron 25.0%
! TTTGAGTCAATTATCTGTAA+AGG - chr4_3:57074526-57074545 None:intergenic 25.0%
! TCCTTTACTGAAATATGTAT+CGG - chr4_3:57074812-57074831 None:intergenic 25.0%
TCCAGATACTACATATACTT+TGG + chr4_3:57072807-57072826 Msa0650280:five_prime_UTR 30.0%
ACCAAAGTATATGTAGTATC+TGG - chr4_3:57072811-57072830 None:intergenic 30.0%
AGATACTACATATACTTTGG+TGG + chr4_3:57072810-57072829 Msa0650280:five_prime_UTR 30.0%
ATCGATATCAAACTTATTCC+AGG + chr4_3:57072955-57072974 Msa0650280:CDS 30.0%
AATTACAGTTTCTGTAGCTT+TGG + chr4_3:57073181-57073200 Msa0650280:CDS 30.0%
ATTACAGTTTCTGTAGCTTT+GGG + chr4_3:57073182-57073201 Msa0650280:CDS 30.0%
TTGTTGACAAATCAAGCAAT+GGG - chr4_3:57073402-57073421 None:intergenic 30.0%
ATTGTTGACAAATCAAGCAA+TGG - chr4_3:57073403-57073422 None:intergenic 30.0%
TTCTCAGAGAAGAACAAAAT+TGG + chr4_3:57073442-57073461 Msa0650280:CDS 30.0%
GTTTATGAATACATGGCTAA+TGG + chr4_3:57073762-57073781 Msa0650280:intron 30.0%
TACCAAAAATGAAGTAGTCT+AGG - chr4_3:57073791-57073810 None:intergenic 30.0%
! CCAATCTAGCAATTTACTTT+TGG - chr4_3:57073917-57073936 None:intergenic 30.0%
CCAAAAGTAAATTGCTAGAT+TGG + chr4_3:57073914-57073933 Msa0650280:intron 30.0%
!!! TACTACTTTTGAGATCTCTA+TGG - chr4_3:57074017-57074036 None:intergenic 30.0%
TATCTGTGATTCCTTCAATT+TGG - chr4_3:57074110-57074129 None:intergenic 30.0%
GAATCACAGATAGAATTGTT+GGG + chr4_3:57074118-57074137 Msa0650280:intron 30.0%
! CGTCTTTTATAATTTAGGCA+TGG + chr4_3:57074479-57074498 Msa0650280:intron 30.0%
CTGATGTGATTCTAATGTTA+GGG + chr4_3:57074641-57074660 Msa0650280:CDS 30.0%
ACCGATACATATTTCAGTAA+AGG + chr4_3:57074808-57074827 Msa0650280:three_prime_UTR 30.0%
GATACATATTTCAGTAAAGG+AGG + chr4_3:57074811-57074830 Msa0650280:three_prime_UTR 30.0%
! TAAAGGAGGTATAATTCCAT+GGG + chr4_3:57074825-57074844 Msa0650280:three_prime_UTR 30.0%
TCCAGATACTACATATACTT+TGG + chr4_3:57072807-57072826 Msa0650280:five_prime_UTR 30.0%
ACCAAAGTATATGTAGTATC+TGG - chr4_3:57072811-57072830 None:intergenic 30.0%
AGATACTACATATACTTTGG+TGG + chr4_3:57072810-57072829 Msa0650280:five_prime_UTR 30.0%
ATCGATATCAAACTTATTCC+AGG + chr4_3:57072955-57072974 Msa0650280:CDS 30.0%
AATTACAGTTTCTGTAGCTT+TGG + chr4_3:57073181-57073200 Msa0650280:CDS 30.0%
ATTACAGTTTCTGTAGCTTT+GGG + chr4_3:57073182-57073201 Msa0650280:CDS 30.0%
TTGTTGACAAATCAAGCAAT+GGG - chr4_3:57073402-57073421 None:intergenic 30.0%
ATTGTTGACAAATCAAGCAA+TGG - chr4_3:57073403-57073422 None:intergenic 30.0%
TTCTCAGAGAAGAACAAAAT+TGG + chr4_3:57073442-57073461 Msa0650280:CDS 30.0%
GTTTATGAATACATGGCTAA+TGG + chr4_3:57073762-57073781 Msa0650280:intron 30.0%
TACCAAAAATGAAGTAGTCT+AGG - chr4_3:57073791-57073810 None:intergenic 30.0%
! CCAATCTAGCAATTTACTTT+TGG - chr4_3:57073917-57073936 None:intergenic 30.0%
CCAAAAGTAAATTGCTAGAT+TGG + chr4_3:57073914-57073933 Msa0650280:intron 30.0%
!!! TACTACTTTTGAGATCTCTA+TGG - chr4_3:57074017-57074036 None:intergenic 30.0%
TATCTGTGATTCCTTCAATT+TGG - chr4_3:57074110-57074129 None:intergenic 30.0%
GAATCACAGATAGAATTGTT+GGG + chr4_3:57074118-57074137 Msa0650280:intron 30.0%
! CGTCTTTTATAATTTAGGCA+TGG + chr4_3:57074479-57074498 Msa0650280:intron 30.0%
CTGATGTGATTCTAATGTTA+GGG + chr4_3:57074641-57074660 Msa0650280:CDS 30.0%
ACCGATACATATTTCAGTAA+AGG + chr4_3:57074808-57074827 Msa0650280:three_prime_UTR 30.0%
GATACATATTTCAGTAAAGG+AGG + chr4_3:57074811-57074830 Msa0650280:three_prime_UTR 30.0%
! TAAAGGAGGTATAATTCCAT+GGG + chr4_3:57074825-57074844 Msa0650280:three_prime_UTR 30.0%
!! AGTATTGGTCTAGAACAATG+TGG + chr4_3:57072838-57072857 Msa0650280:five_prime_UTR 35.0%
TGTATTTGTATAAGCCATGC+AGG - chr4_3:57072887-57072906 None:intergenic 35.0%
AATACAAATATAAGTGGCGC+AGG + chr4_3:57072901-57072920 Msa0650280:CDS 35.0%
GATATCAAACTTATTCCAGG+TGG + chr4_3:57072958-57072977 Msa0650280:CDS 35.0%
GTGGGCAATTTCTATATATC+AGG + chr4_3:57072980-57072999 Msa0650280:CDS 35.0%
!! TATTCACCTAATTCTGAAGC+AGG - chr4_3:57073009-57073028 None:intergenic 35.0%
!!! ATTTTTTCTACAGACTCAGG+AGG + chr4_3:57073225-57073244 Msa0650280:CDS 35.0%
TTCATTCAAATGTCGGAGAA+TGG - chr4_3:57073275-57073294 None:intergenic 35.0%
! TCTTTGACTTCCCTAGAAAA+TGG - chr4_3:57073339-57073358 None:intergenic 35.0%
GAGAAGAACAAAATTGGAGA+AGG + chr4_3:57073448-57073467 Msa0650280:CDS 35.0%
AAGAACAAAATTGGAGAAGG+TGG + chr4_3:57073451-57073470 Msa0650280:CDS 35.0%
! AAAATTGGAGAAGGTGGTTT+TGG + chr4_3:57073457-57073476 Msa0650280:CDS 35.0%
!!! TGGTTTTGGACCTGTATATT+TGG + chr4_3:57073471-57073490 Msa0650280:CDS 35.0%
! AGCCTAGACTACTTCATTTT+TGG + chr4_3:57073786-57073805 Msa0650280:intron 35.0%
CATATTATGTGGAAACGCTT+TGG - chr4_3:57073940-57073959 None:intergenic 35.0%
AAGCGTTTCCACATAATATG+TGG + chr4_3:57073940-57073959 Msa0650280:intron 35.0%
TTCATCAAGATTCTCGATTG+AGG + chr4_3:57073986-57074005 Msa0650280:intron 35.0%
!!! TTTGGATTGGCTAGAACTTT+TGG + chr4_3:57074078-57074097 Msa0650280:intron 35.0%
TTTGGAGGAAACCAAATTGA+AGG + chr4_3:57074096-57074115 Msa0650280:intron 35.0%
GGAATCACAGATAGAATTGT+TGG + chr4_3:57074117-57074136 Msa0650280:intron 35.0%
TTACGTTTGCTTATTGCAGT+GGG + chr4_3:57074229-57074248 Msa0650280:intron 35.0%
AATACCAAAGCTGAAAACGT+CGG - chr4_3:57074301-57074320 None:intergenic 35.0%
CAGAGAAGATAAAGTTAGCA+TGG - chr4_3:57074446-57074465 None:intergenic 35.0%
TAATTTAGGCATGGACATTC+TGG + chr4_3:57074488-57074507 Msa0650280:intron 35.0%
! GATAATTGACTCAAACATCG+TGG + chr4_3:57074531-57074550 Msa0650280:CDS 35.0%
GCTGATGTGATTCTAATGTT+AGG + chr4_3:57074640-57074659 Msa0650280:CDS 35.0%
GATGATATTAGATGAGCCTA+AGG + chr4_3:57074672-57074691 Msa0650280:CDS 35.0%
! GTAAAGGAGGTATAATTCCA+TGG + chr4_3:57074824-57074843 Msa0650280:three_prime_UTR 35.0%
! AAAGGAGGTATAATTCCATG+GGG + chr4_3:57074826-57074845 Msa0650280:three_prime_UTR 35.0%
!! AGTATTGGTCTAGAACAATG+TGG + chr4_3:57072838-57072857 Msa0650280:five_prime_UTR 35.0%
TGTATTTGTATAAGCCATGC+AGG - chr4_3:57072887-57072906 None:intergenic 35.0%
AATACAAATATAAGTGGCGC+AGG + chr4_3:57072901-57072920 Msa0650280:CDS 35.0%
GATATCAAACTTATTCCAGG+TGG + chr4_3:57072958-57072977 Msa0650280:CDS 35.0%
GTGGGCAATTTCTATATATC+AGG + chr4_3:57072980-57072999 Msa0650280:CDS 35.0%
!! TATTCACCTAATTCTGAAGC+AGG - chr4_3:57073009-57073028 None:intergenic 35.0%
!!! ATTTTTTCTACAGACTCAGG+AGG + chr4_3:57073225-57073244 Msa0650280:CDS 35.0%
TTCATTCAAATGTCGGAGAA+TGG - chr4_3:57073275-57073294 None:intergenic 35.0%
! TCTTTGACTTCCCTAGAAAA+TGG - chr4_3:57073339-57073358 None:intergenic 35.0%
GAGAAGAACAAAATTGGAGA+AGG + chr4_3:57073448-57073467 Msa0650280:CDS 35.0%
AAGAACAAAATTGGAGAAGG+TGG + chr4_3:57073451-57073470 Msa0650280:CDS 35.0%
! AAAATTGGAGAAGGTGGTTT+TGG + chr4_3:57073457-57073476 Msa0650280:CDS 35.0%
!!! TGGTTTTGGACCTGTATATT+TGG + chr4_3:57073471-57073490 Msa0650280:CDS 35.0%
! AGCCTAGACTACTTCATTTT+TGG + chr4_3:57073786-57073805 Msa0650280:intron 35.0%
CATATTATGTGGAAACGCTT+TGG - chr4_3:57073940-57073959 None:intergenic 35.0%
AAGCGTTTCCACATAATATG+TGG + chr4_3:57073940-57073959 Msa0650280:intron 35.0%
TTCATCAAGATTCTCGATTG+AGG + chr4_3:57073986-57074005 Msa0650280:intron 35.0%
!!! TTTGGATTGGCTAGAACTTT+TGG + chr4_3:57074078-57074097 Msa0650280:intron 35.0%
TTTGGAGGAAACCAAATTGA+AGG + chr4_3:57074096-57074115 Msa0650280:intron 35.0%
GGAATCACAGATAGAATTGT+TGG + chr4_3:57074117-57074136 Msa0650280:intron 35.0%
TTACGTTTGCTTATTGCAGT+GGG + chr4_3:57074229-57074248 Msa0650280:intron 35.0%
AATACCAAAGCTGAAAACGT+CGG - chr4_3:57074301-57074320 None:intergenic 35.0%
CAGAGAAGATAAAGTTAGCA+TGG - chr4_3:57074446-57074465 None:intergenic 35.0%
TAATTTAGGCATGGACATTC+TGG + chr4_3:57074488-57074507 Msa0650280:intron 35.0%
! GATAATTGACTCAAACATCG+TGG + chr4_3:57074531-57074550 Msa0650280:CDS 35.0%
GCTGATGTGATTCTAATGTT+AGG + chr4_3:57074640-57074659 Msa0650280:CDS 35.0%
GATGATATTAGATGAGCCTA+AGG + chr4_3:57074672-57074691 Msa0650280:CDS 35.0%
! GTAAAGGAGGTATAATTCCA+TGG + chr4_3:57074824-57074843 Msa0650280:three_prime_UTR 35.0%
! AAAGGAGGTATAATTCCATG+GGG + chr4_3:57074826-57074845 Msa0650280:three_prime_UTR 35.0%
! ACTTTGGTGGATGAGAGTAT+TGG + chr4_3:57072823-57072842 Msa0650280:five_prime_UTR 40.0%
! ATTGGTCTAGAACAATGTGG+AGG + chr4_3:57072841-57072860 Msa0650280:five_prime_UTR 40.0%
AACAATGTGGAGGAAAATGC+TGG + chr4_3:57072851-57072870 Msa0650280:five_prime_UTR 40.0%
CTGGAATAATTGTTCCTGCA+TGG + chr4_3:57072870-57072889 Msa0650280:exon 40.0%
AGTGGTTGTGTTATGTGGTT+TGG + chr4_3:57072925-57072944 Msa0650280:CDS 40.0%
ATCAAACTTATTCCAGGTGG+TGG + chr4_3:57072961-57072980 Msa0650280:CDS 40.0%
TCAAACTTATTCCAGGTGGT+GGG + chr4_3:57072962-57072981 Msa0650280:CDS 40.0%
!! ATAGTATTGACGATGAGCAC+AGG + chr4_3:57073135-57073154 Msa0650280:CDS 40.0%
! CTCTGAGAAATTGTCAGTAG+CGG - chr4_3:57073431-57073450 None:intergenic 40.0%
CTTACGTTTGCTTATTGCAG+TGG + chr4_3:57074228-57074247 Msa0650280:intron 40.0%
TGTCCATCAATAGCATACTC+TGG - chr4_3:57074264-57074283 None:intergenic 40.0%
! AAATCCGACGTTTTCAGCTT+TGG + chr4_3:57074294-57074313 Msa0650280:intron 40.0%
TAGTGCTTACAGAAGCAACA+AGG - chr4_3:57074389-57074408 None:intergenic 40.0%
! TTGTTGCTTCTGTAAGCACT+AGG + chr4_3:57074388-57074407 Msa0650280:intron 40.0%
ATGTGTGCAACAATATCCAG+AGG + chr4_3:57074603-57074622 Msa0650280:CDS 40.0%
TGCAACAATATCCAGAGGTT+AGG + chr4_3:57074608-57074627 Msa0650280:CDS 40.0%
CATTAGAATCACATCAGCCA+TGG - chr4_3:57074638-57074657 None:intergenic 40.0%
TCTTTCCTCGTAGTAAAACC+TGG - chr4_3:57074700-57074719 None:intergenic 40.0%
! AGTGCTCGGTGAAAATCAAT+AGG + chr4_3:57074783-57074802 Msa0650280:three_prime_UTR 40.0%
AATAGTGACTTTGTTCCCCA+TGG - chr4_3:57074844-57074863 None:intergenic 40.0%
! ACTTTGGTGGATGAGAGTAT+TGG + chr4_3:57072823-57072842 Msa0650280:five_prime_UTR 40.0%
! ATTGGTCTAGAACAATGTGG+AGG + chr4_3:57072841-57072860 Msa0650280:five_prime_UTR 40.0%
AACAATGTGGAGGAAAATGC+TGG + chr4_3:57072851-57072870 Msa0650280:five_prime_UTR 40.0%
CTGGAATAATTGTTCCTGCA+TGG + chr4_3:57072870-57072889 Msa0650280:exon 40.0%
AGTGGTTGTGTTATGTGGTT+TGG + chr4_3:57072925-57072944 Msa0650280:CDS 40.0%
ATCAAACTTATTCCAGGTGG+TGG + chr4_3:57072961-57072980 Msa0650280:CDS 40.0%
TCAAACTTATTCCAGGTGGT+GGG + chr4_3:57072962-57072981 Msa0650280:CDS 40.0%
!! ATAGTATTGACGATGAGCAC+AGG + chr4_3:57073135-57073154 Msa0650280:CDS 40.0%
! CTCTGAGAAATTGTCAGTAG+CGG - chr4_3:57073431-57073450 None:intergenic 40.0%
CTTACGTTTGCTTATTGCAG+TGG + chr4_3:57074228-57074247 Msa0650280:intron 40.0%
TGTCCATCAATAGCATACTC+TGG - chr4_3:57074264-57074283 None:intergenic 40.0%
! AAATCCGACGTTTTCAGCTT+TGG + chr4_3:57074294-57074313 Msa0650280:intron 40.0%
TAGTGCTTACAGAAGCAACA+AGG - chr4_3:57074389-57074408 None:intergenic 40.0%
! TTGTTGCTTCTGTAAGCACT+AGG + chr4_3:57074388-57074407 Msa0650280:intron 40.0%
ATGTGTGCAACAATATCCAG+AGG + chr4_3:57074603-57074622 Msa0650280:CDS 40.0%
TGCAACAATATCCAGAGGTT+AGG + chr4_3:57074608-57074627 Msa0650280:CDS 40.0%
CATTAGAATCACATCAGCCA+TGG - chr4_3:57074638-57074657 None:intergenic 40.0%
TCTTTCCTCGTAGTAAAACC+TGG - chr4_3:57074700-57074719 None:intergenic 40.0%
! AGTGCTCGGTGAAAATCAAT+AGG + chr4_3:57074783-57074802 Msa0650280:three_prime_UTR 40.0%
AATAGTGACTTTGTTCCCCA+TGG - chr4_3:57074844-57074863 None:intergenic 40.0%
AATATAAGTGGCGCAGGAAG+TGG + chr4_3:57072907-57072926 Msa0650280:CDS 45.0%
CAGGAAGTGGTTGTGTTATG+TGG + chr4_3:57072920-57072939 Msa0650280:CDS 45.0%
TATAGAAATTGCCCACCACC+TGG - chr4_3:57072976-57072995 None:intergenic 45.0%
AGGATGCCTGCTTCAGAATT+AGG + chr4_3:57073000-57073019 Msa0650280:CDS 45.0%
CTAGGGAAGTCAAAGACAGA+AGG + chr4_3:57073343-57073362 Msa0650280:intron 45.0%
AGGCAACTATGAGAGACACA+TGG + chr4_3:57073363-57073382 Msa0650280:CDS 45.0%
TGAGAGACACATGGACGATA+TGG + chr4_3:57073372-57073391 Msa0650280:CDS 45.0%
ATCCAGGGAAAGTTTGAGAG+TGG + chr4_3:57073591-57073610 Msa0650280:intron 45.0%
TCCAGGGAAAGTTTGAGAGT+GGG + chr4_3:57073592-57073611 Msa0650280:intron 45.0%
TTTCACTGAGCTCAGCACAA+GGG + chr4_3:57073637-57073656 Msa0650280:intron 45.0%
!!! GGATTGGCTAGAACTTTTGG+AGG + chr4_3:57074081-57074100 Msa0650280:intron 45.0%
TGCTTATTGCAGTGGGTACA+TGG + chr4_3:57074236-57074255 Msa0650280:intron 45.0%
GCACCAGAGTATGCTATTGA+TGG + chr4_3:57074258-57074277 Msa0650280:intron 45.0%
! GCATGGACATTCTGGAAACA+TGG + chr4_3:57074496-57074515 Msa0650280:CDS 45.0%
AGAATCACATCAGCCATGGT+AGG - chr4_3:57074634-57074653 None:intergenic 45.0%
GTAGTAAAACCTGGCTCCTT+AGG - chr4_3:57074691-57074710 None:intergenic 45.0%
AGAATCTGCTCAAGCTCAAG+TGG + chr4_3:57074717-57074736 Msa0650280:CDS 45.0%
GAATCTGCTCAAGCTCAAGT+GGG + chr4_3:57074718-57074737 Msa0650280:CDS 45.0%
! CGATGAGCTCTTTTAGTGCT+CGG + chr4_3:57074769-57074788 Msa0650280:three_prime_UTR 45.0%
AATATAAGTGGCGCAGGAAG+TGG + chr4_3:57072907-57072926 Msa0650280:CDS 45.0%
CAGGAAGTGGTTGTGTTATG+TGG + chr4_3:57072920-57072939 Msa0650280:CDS 45.0%
TATAGAAATTGCCCACCACC+TGG - chr4_3:57072976-57072995 None:intergenic 45.0%
AGGATGCCTGCTTCAGAATT+AGG + chr4_3:57073000-57073019 Msa0650280:CDS 45.0%
CTAGGGAAGTCAAAGACAGA+AGG + chr4_3:57073343-57073362 Msa0650280:intron 45.0%
AGGCAACTATGAGAGACACA+TGG + chr4_3:57073363-57073382 Msa0650280:CDS 45.0%
TGAGAGACACATGGACGATA+TGG + chr4_3:57073372-57073391 Msa0650280:CDS 45.0%
ATCCAGGGAAAGTTTGAGAG+TGG + chr4_3:57073591-57073610 Msa0650280:intron 45.0%
TCCAGGGAAAGTTTGAGAGT+GGG + chr4_3:57073592-57073611 Msa0650280:intron 45.0%
TTTCACTGAGCTCAGCACAA+GGG + chr4_3:57073637-57073656 Msa0650280:intron 45.0%
!!! GGATTGGCTAGAACTTTTGG+AGG + chr4_3:57074081-57074100 Msa0650280:intron 45.0%
TGCTTATTGCAGTGGGTACA+TGG + chr4_3:57074236-57074255 Msa0650280:intron 45.0%
GCACCAGAGTATGCTATTGA+TGG + chr4_3:57074258-57074277 Msa0650280:intron 45.0%
! GCATGGACATTCTGGAAACA+TGG + chr4_3:57074496-57074515 Msa0650280:CDS 45.0%
AGAATCACATCAGCCATGGT+AGG - chr4_3:57074634-57074653 None:intergenic 45.0%
GTAGTAAAACCTGGCTCCTT+AGG - chr4_3:57074691-57074710 None:intergenic 45.0%
AGAATCTGCTCAAGCTCAAG+TGG + chr4_3:57074717-57074736 Msa0650280:CDS 45.0%
GAATCTGCTCAAGCTCAAGT+GGG + chr4_3:57074718-57074737 Msa0650280:CDS 45.0%
! CGATGAGCTCTTTTAGTGCT+CGG + chr4_3:57074769-57074788 Msa0650280:three_prime_UTR 45.0%
! GTATTGACGATGAGCACAGG+AGG + chr4_3:57073138-57073157 Msa0650280:CDS 50.0%
!! AGACTCAGGAGGAGCATTGT+TGG + chr4_3:57073236-57073255 Msa0650280:CDS 50.0%
ACCCACTCTCAAACTTTCCC+TGG - chr4_3:57073596-57073615 None:intergenic 50.0%
CTTTCACTGAGCTCAGCACA+AGG + chr4_3:57073636-57073655 Msa0650280:intron 50.0%
GCACACATAAGAGTCCAACG+TGG - chr4_3:57074591-57074610 None:intergenic 50.0%
TTAGATGAGCCTAAGGAGCC+AGG + chr4_3:57074679-57074698 Msa0650280:CDS 50.0%
! AGGAGCCAGGTTTTACTACG+AGG + chr4_3:57074692-57074711 Msa0650280:CDS 50.0%
! GTATTGACGATGAGCACAGG+AGG + chr4_3:57073138-57073157 Msa0650280:CDS 50.0%
!! AGACTCAGGAGGAGCATTGT+TGG + chr4_3:57073236-57073255 Msa0650280:CDS 50.0%
ACCCACTCTCAAACTTTCCC+TGG - chr4_3:57073596-57073615 None:intergenic 50.0%
CTTTCACTGAGCTCAGCACA+AGG + chr4_3:57073636-57073655 Msa0650280:intron 50.0%
GCACACATAAGAGTCCAACG+TGG - chr4_3:57074591-57074610 None:intergenic 50.0%
TTAGATGAGCCTAAGGAGCC+AGG + chr4_3:57074679-57074698 Msa0650280:CDS 50.0%
! AGGAGCCAGGTTTTACTACG+AGG + chr4_3:57074692-57074711 Msa0650280:CDS 50.0%
GTATCGCGTTGCATCCACGT+TGG + chr4_3:57074574-57074593 Msa0650280:CDS 55.0%
TCCAGAGGTTAGGCCTACCA+TGG + chr4_3:57074618-57074637 Msa0650280:CDS 55.0%
CTGCTCAAGCTCAAGTGGGA+AGG + chr4_3:57074722-57074741 Msa0650280:CDS 55.0%
GTATCGCGTTGCATCCACGT+TGG + chr4_3:57074574-57074593 Msa0650280:CDS 55.0%
TCCAGAGGTTAGGCCTACCA+TGG + chr4_3:57074618-57074637 Msa0650280:CDS 55.0%
CTGCTCAAGCTCAAGTGGGA+AGG + chr4_3:57074722-57074741 Msa0650280:CDS 55.0%
GCCATGGTAGGCCTAACCTC+TGG - chr4_3:57074622-57074641 None:intergenic 60.0%
GCCATGGTAGGCCTAACCTC+TGG - chr4_3:57074622-57074641 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 57072793 57074878 57072793 ID=Msa0650280;Name=Msa0650280
chr4_3 mRNA 57072793 57074878 57072793 ID=Msa0650280-mRNA-1;Parent=Msa0650280;Name=Msa0650280-mRNA-1;_AED=0.24;_eAED=0.24;_QI=96|0.66|0.75|1|1|0.75|4|110|228
chr4_3 exon 57072793 57073021 57072793 ID=Msa0650280-mRNA-1:exon:14957;Parent=Msa0650280-mRNA-1
chr4_3 exon 57073123 57073257 57073123 ID=Msa0650280-mRNA-1:exon:14958;Parent=Msa0650280-mRNA-1
chr4_3 exon 57073347 57073492 57073347 ID=Msa0650280-mRNA-1:exon:14959;Parent=Msa0650280-mRNA-1
chr4_3 exon 57074496 57074878 57074496 ID=Msa0650280-mRNA-1:exon:14960;Parent=Msa0650280-mRNA-1
chr4_3 five_prime_UTR 57072793 57072888 57072793 ID=Msa0650280-mRNA-1:five_prime_utr;Parent=Msa0650280-mRNA-1
chr4_3 CDS 57072889 57073021 57072889 ID=Msa0650280-mRNA-1:cds;Parent=Msa0650280-mRNA-1
chr4_3 CDS 57073123 57073257 57073123 ID=Msa0650280-mRNA-1:cds;Parent=Msa0650280-mRNA-1
chr4_3 CDS 57073347 57073492 57073347 ID=Msa0650280-mRNA-1:cds;Parent=Msa0650280-mRNA-1
chr4_3 CDS 57074496 57074768 57074496 ID=Msa0650280-mRNA-1:cds;Parent=Msa0650280-mRNA-1
chr4_3 three_prime_UTR 57074769 57074878 57074769 ID=Msa0650280-mRNA-1:three_prime_utr;Parent=Msa0650280-mRNA-1
Gene Sequence

>Msa0650280

ATGGCTTATACAAATACAAATATAAGTGGCGCAGGAAGTGGTTGTGTTATGTGGTTTGGTGATTTAATCGATATCAAACTTATTCCAGGTGGTGGGCAATTTCTATATATCAGGATGCCTGCTTCAGAATTAGATAAAGGCAACAATAGTATTGACGATGAGCACAGGAGGAACACGAGAAAAATAGTTGTAATTACAGTTTCTGTAGCTTTGGGAATGCTTTTACTTGCTATTTATTTTTTCTACAGACTCAGGAGGAGCATTGTTGGGAAGTCAAAGACAGAAGGCAACTATGAGAGACACATGGACGATATGGATCTCCCATTGCTTGATTTGTCAACAATTATTACCGCTACTGACAATTTCTCAGAGAAGAACAAAATTGGAGAAGGTGGTTTTGGACCTGTATATTTGGCATGGACATTCTGGAAACATGGAAGACCTTTACAGATAATTGACTCAAACATCGTGGATTCATGCATTGTATCTGAAGTATCGCGTTGCATCCACGTTGGACTCTTATGTGTGCAACAATATCCAGAGGTTAGGCCTACCATGGCTGATGTGATTCTAATGTTAGGGAGTGAGATGATGATATTAGATGAGCCTAAGGAGCCAGGTTTTACTACGAGGAAAGAATCTGCTCAAGCTCAAGTGGGAAGGATACAAGTTCAAACTACGAAATGA
Protein sequence

>Msa0650280

MAYTNTNISGAGSGCVMWFGDLIDIKLIPGGGQFLYIRMPASELDKGNNSIDDEHRRNTRKIVVITVSVALGMLLLAIYFFYRLRRSIVGKSKTEGNYERHMDDMDLPLLDLSTIITATDNFSEKNKIGEGGFGPVYLAWTFWKHGRPLQIIDSNIVDSCIVSEVSRCIHVGLLCVQQYPEVRPTMADVILMLGSEMMILDEPKEPGFTTRKESAQAQVGRIQVQTTK*