Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578570 | XP_003607956.1 | 91.611 | 596 | 6 | 1 | 1 | 596 | 1 | 552 | 0.0 | 1111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578570 | sp|Q9LDD8|MCCB_ARATH | 72.712 | 590 | 105 | 2 | 19 | 596 | 42 | 587 | 0.0 | 863 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578570 | G7JL66 | 91.611 | 596 | 6 | 1 | 1 | 596 | 1 | 552 | 0.0 | 1111 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0578570 | Msa0602180 | 0.839385 | 1.635327e-57 | -8.615850e-47 |
| Msa0578570 | Msa0611320 | 0.875300 | 3.435354e-68 | -8.615850e-47 |
| Msa0578570 | Msa0643520 | 0.832240 | 1.058057e-55 | -8.615850e-47 |
| Msa0578570 | Msa0651620 | 0.840313 | 9.372106e-58 | -8.615850e-47 |
| Msa0578570 | Msa0693950 | 0.821598 | 3.708329e-53 | -8.615850e-47 |
| Msa0578570 | Msa1443220 | 0.811967 | 5.371700e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578570 | MtrunA17_Chr4g0044751 | 91.611 | 596 | 6 | 1 | 1 | 596 | 1 | 552 | 0.0 | 1111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0578570 | AT4G34030.1 | 72.712 | 590 | 105 | 2 | 19 | 596 | 42 | 587 | 0.0 | 863 |
Find 178 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATTCTAAATACACCATATT+TGG | 0.155301 | 4_1:-83113111 | None:intergenic |
| GCAAATAACCCTACTGTTAA+AGG | 0.172267 | 4_1:+83110569 | Msa0578570:CDS |
| GAAAACATGTTTAAACTAAT+TGG | 0.177202 | 4_1:+83109523 | Msa0578570:exon |
| CCTTCTGGTGGGGTTGTGAC+TGG | 0.207802 | 4_1:+83110509 | Msa0578570:CDS |
| TTTCCAGATAAGGAAAATTT+TGG | 0.222848 | 4_1:+83110719 | Msa0578570:CDS |
| TTCTCTTCTTGACAGTAAAT+TGG | 0.223941 | 4_1:-83109569 | None:intergenic |
| AGCCTAACACCAATGCAATT+TGG | 0.229338 | 4_1:-83110787 | None:intergenic |
| GGACAGCCTGTAGGAATTAT+TGG | 0.229562 | 4_1:+83111768 | Msa0578570:CDS |
| CGGGTTTCACAATGAATATT+TGG | 0.241606 | 4_1:+83111644 | Msa0578570:CDS |
| AGAAGTCTCTGCGGAGGATT+TGG | 0.263617 | 4_1:+83111092 | Msa0578570:CDS |
| GCCTAACACCAATGCAATTT+GGG | 0.272182 | 4_1:-83110786 | None:intergenic |
| TATGAAGAGCCTTTGCCTTC+TGG | 0.275232 | 4_1:+83110494 | Msa0578570:CDS |
| AGATGTTTCTTAACTGTAAT+AGG | 0.281386 | 4_1:-83110605 | None:intergenic |
| ATGAGTTGACAGACCTTTAT+CGG | 0.298219 | 4_1:+83111610 | Msa0578570:CDS |
| CTGCACATAGATTTCAAATA+AGG | 0.305925 | 4_1:-83111715 | None:intergenic |
| GCGACAGAAAATACCAAATA+TGG | 0.306791 | 4_1:+83113098 | Msa0578570:CDS |
| TGAGTGAATATGAAGCTTGC+AGG | 0.334512 | 4_1:+83110461 | Msa0578570:intron |
| AAATACAAGTTATGAGTATA+AGG | 0.335328 | 4_1:+83111356 | Msa0578570:CDS |
| TTACTCAACGGCGAGGCTTT+GGG | 0.338797 | 4_1:+83113004 | Msa0578570:CDS |
| ATTACTCAACGGCGAGGCTT+TGG | 0.339622 | 4_1:+83113003 | Msa0578570:CDS |
| AGCCTCGCCGTTGAGTAATA+AGG | 0.347863 | 4_1:-83112999 | None:intergenic |
| ACAAATCTACATCAGACTTT+AGG | 0.354274 | 4_1:-83113181 | None:intergenic |
| CCCCAAATTGCATTGGTGTT+AGG | 0.364602 | 4_1:+83110785 | Msa0578570:CDS |
| TCAGAACATCACCGGATTCA+TGG | 0.364972 | 4_1:+83111881 | Msa0578570:CDS |
| GTGTTAGGCTCTTGCACTGC+TGG | 0.368017 | 4_1:+83110800 | Msa0578570:CDS |
| GTCCGAACTTCATGTTCCTT+TGG | 0.370909 | 4_1:+83112637 | Msa0578570:CDS |
| TTCTTTCCTTGAGCTTTCAC+AGG | 0.384052 | 4_1:+83109765 | Msa0578570:CDS |
| CATGTTCATAAGGTTCTTGC+TGG | 0.385373 | 4_1:+83109655 | Msa0578570:CDS |
| TGTTTGGGTGCCCTTCCTAA+TGG | 0.386494 | 4_1:+83109595 | Msa0578570:CDS |
| TATGTGCAGACTCTTGTAAC+AGG | 0.393966 | 4_1:+83111729 | Msa0578570:CDS |
| CTTCTGGTGGGGTTGTGACT+GGG | 0.408731 | 4_1:+83110510 | Msa0578570:CDS |
| TGTTGCAAGTTGACATGATC+AGG | 0.408834 | 4_1:-83113287 | None:intergenic |
| TACAGGTTGCTGCATATACT+TGG | 0.409782 | 4_1:-83111673 | None:intergenic |
| CAAATAACCCTACTGTTAAA+GGG | 0.412508 | 4_1:+83110570 | Msa0578570:CDS |
| CGAAAACCAACAACCGATAA+AGG | 0.413437 | 4_1:-83111623 | None:intergenic |
| TGGTGCTTTCCTTCCCAAGC+AGG | 0.414000 | 4_1:+83110688 | Msa0578570:CDS |
| AGACGATCAATTCTTTCTCT+TGG | 0.414876 | 4_1:-83109727 | None:intergenic |
| GCAGTACACTGCAAGACTTC+GGG | 0.417609 | 4_1:+83111123 | Msa0578570:CDS |
| GAAGTCTCTGCGGAGGATTT+GGG | 0.419494 | 4_1:+83111093 | Msa0578570:CDS |
| TGTTCCATAGCTCCGCCATT+AGG | 0.421284 | 4_1:-83109610 | None:intergenic |
| ATAATTGTTGGTGGAAGCTT+TGG | 0.424489 | 4_1:+83112579 | Msa0578570:CDS |
| GAATTTCATGCTCTTGCACT+TGG | 0.426359 | 4_1:+83111273 | Msa0578570:CDS |
| GAGAGGTGGGAGAGGTTGAA+TGG | 0.429245 | 4_1:+83113215 | Msa0578570:three_prime_UTR |
| TTTAATTCATACCATGAATC+CGG | 0.429251 | 4_1:-83111892 | None:intergenic |
| ATTGATCGTCTTCTTGATCC+TGG | 0.432262 | 4_1:+83109739 | Msa0578570:CDS |
| GATGAATTCAAGAAACTGTA+TGG | 0.435673 | 4_1:+83111486 | Msa0578570:CDS |
| GTCAAGAATTTGCATATGGC+TGG | 0.436817 | 4_1:+83111306 | Msa0578570:CDS |
| ATCTGTGATGGGTGGTGCTC+AGG | 0.438212 | 4_1:+83112674 | Msa0578570:CDS |
| GAACATGAAGTTCGGACTAT+AGG | 0.440234 | 4_1:-83112631 | None:intergenic |
| ACCTTTCTTCTTCTAAGTAA+AGG | 0.442877 | 4_1:-83109480 | None:intergenic |
| CTTGACCATCACACTTTCAT+CGG | 0.444386 | 4_1:-83110846 | None:intergenic |
| GCCTTTACTTAGAAGAAGAA+AGG | 0.447297 | 4_1:+83109479 | Msa0578570:five_prime_UTR |
| CTGATGTAGATTTGTTTACA+TGG | 0.448736 | 4_1:+83113189 | Msa0578570:three_prime_UTR |
| TGGAAAGACATCAGCCTGCT+TGG | 0.449511 | 4_1:-83110702 | None:intergenic |
| CATAAGGTTCTTGCTGGTGG+TGG | 0.450736 | 4_1:+83109661 | Msa0578570:CDS |
| GACAGACCTTTATCGGTTGT+TGG | 0.452410 | 4_1:+83111617 | Msa0578570:CDS |
| GGAAAGACATCAGCCTGCTT+GGG | 0.453197 | 4_1:-83110701 | None:intergenic |
| GAACCTTATGAACATGAGAT+TGG | 0.456065 | 4_1:-83109648 | None:intergenic |
| GGTGGGGTTGTGACTGGGAT+CGG | 0.456548 | 4_1:+83110515 | Msa0578570:CDS |
| CCTAAAATCACTATAATTGT+TGG | 0.457203 | 4_1:+83112567 | Msa0578570:CDS |
| TCAATGAATCGGCTCTGAAA+GGG | 0.459441 | 4_1:+83111808 | Msa0578570:CDS |
| ACGGCGAGGCTTTGGGATGA+TGG | 0.460924 | 4_1:+83113011 | Msa0578570:CDS |
| ACTCCAATCTCATGTTCATA+AGG | 0.464137 | 4_1:+83109645 | Msa0578570:CDS |
| GGGAGAGATGTCTCGACAAA+TGG | 0.464683 | 4_1:+83111327 | Msa0578570:CDS |
| GTCTTTCTTCAGAACATCAC+CGG | 0.466141 | 4_1:+83111873 | Msa0578570:CDS |
| CAATGCGAGAAATCACTTCT+CGG | 0.469080 | 4_1:-83111446 | None:intergenic |
| ATCGGCCATAGCAGGTATAT+AGG | 0.469640 | 4_1:-83110828 | None:intergenic |
| GTCAAGAAGAGAATTGTGTT+TGG | 0.469973 | 4_1:+83109579 | Msa0578570:CDS |
| ATCACAGATATTCTAGCATT+AGG | 0.470037 | 4_1:-83112660 | None:intergenic |
| TGGCCGACTTTGTATGTTTG+TGG | 0.474171 | 4_1:+83110547 | Msa0578570:CDS |
| TTGTTTCCAATAATTCCTAC+AGG | 0.474318 | 4_1:-83111774 | None:intergenic |
| TTGACATTATAGGCTGCTAC+TGG | 0.479167 | 4_1:+83111066 | Msa0578570:intron |
| CATGGGAAGAGAGGTGGGAG+AGG | 0.485320 | 4_1:+83113207 | Msa0578570:three_prime_UTR |
| GTTTACATGGGAAGAGAGGT+GGG | 0.489753 | 4_1:+83113202 | Msa0578570:three_prime_UTR |
| GATAATATTCATCAGGCTGC+TGG | 0.490449 | 4_1:+83112765 | Msa0578570:intron |
| GCAAATGGCATAGCAAAGTC+AGG | 0.491642 | 4_1:+83112287 | Msa0578570:CDS |
| GCTGATACAAGAAAAGTGAT+TGG | 0.495102 | 4_1:+83113047 | Msa0578570:CDS |
| TGCAGTACACTGCAAGACTT+CGG | 0.495679 | 4_1:+83111122 | Msa0578570:CDS |
| GTGATTTCTCGCATTGTTGA+CGG | 0.495714 | 4_1:+83111453 | Msa0578570:CDS |
| ATACAAAGTCGGCCATGCAC+TGG | 0.497636 | 4_1:-83110539 | None:intergenic |
| CATCGTCAAGAATTTGCATA+TGG | 0.498312 | 4_1:+83111302 | Msa0578570:CDS |
| CTTTGCTATGCCATTTGCCT+CGG | 0.499152 | 4_1:-83112282 | None:intergenic |
| GAAGAGCCTTTGCCTTCTGG+TGG | 0.501882 | 4_1:+83110497 | Msa0578570:CDS |
| ATTTGTTTACATGGGAAGAG+AGG | 0.504374 | 4_1:+83113198 | Msa0578570:three_prime_UTR |
| AAGAGCCTTTGCCTTCTGGT+GGG | 0.506082 | 4_1:+83110498 | Msa0578570:CDS |
| TGTTTACATGGGAAGAGAGG+TGG | 0.506141 | 4_1:+83113201 | Msa0578570:three_prime_UTR |
| GGCTCAAAATCCGAGGCAAA+TGG | 0.507106 | 4_1:+83112272 | Msa0578570:CDS |
| TCAAGAAGAGAATTGTGTTT+GGG | 0.509555 | 4_1:+83109580 | Msa0578570:CDS |
| TCTTCTTGACAGTAAATTGG+AGG | 0.512701 | 4_1:-83109566 | None:intergenic |
| GGCTGATGTCTTTCCAGATA+AGG | 0.516837 | 4_1:+83110709 | Msa0578570:CDS |
| CCTTCCTAATGGCGGAGCTA+TGG | 0.518394 | 4_1:+83109606 | Msa0578570:CDS |
| TTCAATGAATCGGCTCTGAA+AGG | 0.519323 | 4_1:+83111807 | Msa0578570:CDS |
| TAAGAAACATCTCAGAGCAC+AGG | 0.521326 | 4_1:+83110616 | Msa0578570:CDS |
| GGCCAAAGGAACATGAAGTT+CGG | 0.521966 | 4_1:-83112639 | None:intergenic |
| TTCATGCTCTTGCACTTGGG+AGG | 0.526100 | 4_1:+83111277 | Msa0578570:CDS |
| AAAATCACTATAATTGTTGG+TGG | 0.528181 | 4_1:+83112570 | Msa0578570:CDS |
| CCATAGCTCCGCCATTAGGA+AGG | 0.529576 | 4_1:-83109606 | None:intergenic |
| AGACATCAGCCTGCTTGGGA+AGG | 0.531693 | 4_1:-83110697 | None:intergenic |
| GTTGGTGGAAGCTTTGGTGC+TGG | 0.534371 | 4_1:+83112585 | Msa0578570:CDS |
| AGTGTGATGGTCAAGGGAAA+TGG | 0.534494 | 4_1:+83110854 | Msa0578570:CDS |
| TACTCAACGTAACATTCCCT+TGG | 0.534828 | 4_1:+83111851 | Msa0578570:CDS |
| ATCCGATAGACATACTTAGC+TGG | 0.539877 | 4_1:+83109410 | Msa0578570:five_prime_UTR |
| GTTGAGGCGTATGAGAGAGA+AGG | 0.540040 | 4_1:+83112972 | Msa0578570:CDS |
| ACAGTGGAACAAGGAAGAAG+AGG | 0.540270 | 4_1:+83112929 | Msa0578570:intron |
| AGAGCCTTTGCCTTCTGGTG+GGG | 0.540577 | 4_1:+83110499 | Msa0578570:CDS |
| AATTGGAAGAAAATCAAGTT+GGG | 0.540944 | 4_1:+83109540 | Msa0578570:CDS |
| GTGGACCCGAAGCTGTGAAA+AGG | 0.541444 | 4_1:+83109680 | Msa0578570:CDS |
| GTTCTGTCTCAAATAGAGAA+AGG | 0.541605 | 4_1:+83112789 | Msa0578570:CDS |
| TCATGCTCTTGCACTTGGGA+GGG | 0.542037 | 4_1:+83111278 | Msa0578570:CDS |
| TAATTGGAAGAAAATCAAGT+TGG | 0.542509 | 4_1:+83109539 | Msa0578570:CDS |
| AGGGATTCCCCAAATTGCAT+TGG | 0.545998 | 4_1:+83110778 | Msa0578570:CDS |
| CAGGCTATAATGTCTGCTCA+AGG | 0.547634 | 4_1:+83110758 | Msa0578570:CDS |
| ACTGGGATCGGTCCAGTGCA+TGG | 0.555718 | 4_1:+83110527 | Msa0578570:CDS |
| AACTGCTGCTTAAGATCGGT+AGG | 0.556025 | 4_1:-83111417 | None:intergenic |
| TGGTAGAATATTCTATAACC+AGG | 0.556699 | 4_1:+83110739 | Msa0578570:CDS |
| GTAGGAATTATTGGAAACAA+TGG | 0.557477 | 4_1:+83111777 | Msa0578570:CDS |
| ATCAAACTGCTGCTTAAGAT+CGG | 0.557686 | 4_1:-83111421 | None:intergenic |
| AGTTCATTGACATCATATAG+TGG | 0.558008 | 4_1:-83111381 | None:intergenic |
| TAATGCTAGAATATCTGTGA+TGG | 0.558539 | 4_1:+83112662 | Msa0578570:CDS |
| TGTCTATCGGATCGGAGGGA+TGG | 0.566042 | 4_1:-83109399 | None:intergenic |
| AATTTCATGCTCTTGCACTT+GGG | 0.567442 | 4_1:+83111274 | Msa0578570:CDS |
| ACACTTTCATCGGCCATAGC+AGG | 0.567737 | 4_1:-83110836 | None:intergenic |
| TAAGAACCTGTGAAAGCTCA+AGG | 0.569308 | 4_1:-83109771 | None:intergenic |
| TTAGGCTCTTGCACTGCTGG+TGG | 0.577005 | 4_1:+83110803 | Msa0578570:CDS |
| CTTGAGCAGACATTATAGCC+TGG | 0.579349 | 4_1:-83110757 | None:intergenic |
| TCAAGAATTTGCATATGGCT+GGG | 0.580272 | 4_1:+83111307 | Msa0578570:CDS |
| GTTCATAAGGTTCTTGCTGG+TGG | 0.580761 | 4_1:+83109658 | Msa0578570:CDS |
| CGATGAAAGTGTGATGGTCA+AGG | 0.582644 | 4_1:+83110847 | Msa0578570:CDS |
| CTTCTTGACAGTAAATTGGA+GGG | 0.582830 | 4_1:-83109565 | None:intergenic |
| CTGCTGCTTAAGATCGGTAG+GGG | 0.583362 | 4_1:-83111415 | None:intergenic |
| TGGAGCTGACCTTAACAAGA+GGG | 0.589538 | 4_1:-83110898 | None:intergenic |
| ACTGCTGCTTAAGATCGGTA+GGG | 0.591481 | 4_1:-83111416 | None:intergenic |
| TTCCAGCTAAGTATGTCTAT+CGG | 0.592315 | 4_1:-83109412 | None:intergenic |
| AGGCTATAATGTCTGCTCAA+GGG | 0.594394 | 4_1:+83110759 | Msa0578570:CDS |
| CAATGAATCGGCTCTGAAAG+GGG | 0.595804 | 4_1:+83111809 | Msa0578570:CDS |
| TGATGTAGATTTGTTTACAT+GGG | 0.605979 | 4_1:+83113190 | Msa0578570:three_prime_UTR |
| GATGAAAGTGTGATGGTCAA+GGG | 0.606022 | 4_1:+83110848 | Msa0578570:CDS |
| ATATTCTAGCATTAGGCCAA+AGG | 0.607064 | 4_1:-83112653 | None:intergenic |
| GTTCAAAGCGAAAGTAGTTG+AGG | 0.608997 | 4_1:+83112956 | Msa0578570:CDS |
| AAATAACCCTACTGTTAAAG+GGG | 0.611007 | 4_1:+83110571 | Msa0578570:CDS |
| AAGATCTTTGGACAGCCTGT+AGG | 0.611650 | 4_1:+83111759 | Msa0578570:CDS |
| GGCAAGAATTAATAATGCCG+TGG | 0.613791 | 4_1:-83109459 | None:intergenic |
| TGGTGCCTATATACCTGCTA+TGG | 0.616593 | 4_1:+83110823 | Msa0578570:CDS |
| AAGTATGTCTATCGGATCGG+AGG | 0.618117 | 4_1:-83109404 | None:intergenic |
| CCAGTCACAACCCCACCAGA+AGG | 0.618817 | 4_1:-83110509 | None:intergenic |
| AATGCTAGAATATCTGTGAT+GGG | 0.621217 | 4_1:+83112663 | Msa0578570:CDS |
| CATAGCTCCGCCATTAGGAA+GGG | 0.621393 | 4_1:-83109605 | None:intergenic |
| TCTCAGAGCACAGGAGATTG+CGG | 0.623049 | 4_1:+83110625 | Msa0578570:CDS |
| AGCAGAGTTCAATGACTCCA+CGG | 0.624090 | 4_1:+83109442 | Msa0578570:five_prime_UTR |
| GAGCTGACCTTAACAAGAGG+GGG | 0.626239 | 4_1:-83110896 | None:intergenic |
| TTGCCACAAACATACAAAGT+CGG | 0.626754 | 4_1:-83110550 | None:intergenic |
| GCTAAGTATGTCTATCGGAT+CGG | 0.627336 | 4_1:-83109407 | None:intergenic |
| GGTTATAATACAGTGGAACA+AGG | 0.634491 | 4_1:+83112920 | Msa0578570:intron |
| TTGGGTGCCCTTCCTAATGG+CGG | 0.634839 | 4_1:+83109598 | Msa0578570:CDS |
| CTGGAGCTGACCTTAACAAG+AGG | 0.642396 | 4_1:-83110899 | None:intergenic |
| AGGAAGTCCTTATTACTCAA+CGG | 0.644858 | 4_1:+83112992 | Msa0578570:CDS |
| AGCTCAAGGAAAGAAGAACC+AGG | 0.646634 | 4_1:-83109757 | None:intergenic |
| AGTATGTCTATCGGATCGGA+GGG | 0.646781 | 4_1:-83109403 | None:intergenic |
| AATAACCCTACTGTTAAAGG+GGG | 0.653890 | 4_1:+83110572 | Msa0578570:CDS |
| GATGTTCTGAAGAAAGACCA+AGG | 0.657231 | 4_1:-83111868 | None:intergenic |
| GTGTATCTTGTTGACAGTGG+TGG | 0.659457 | 4_1:+83110668 | Msa0578570:CDS |
| GCAAGTTGACATGATCAGGA+AGG | 0.660856 | 4_1:-83113283 | None:intergenic |
| ATGTTCTGAAGAAAGACCAA+GGG | 0.671246 | 4_1:-83111867 | None:intergenic |
| GTCTCTGCGGAGGATTTGGG+AGG | 0.673290 | 4_1:+83111096 | Msa0578570:CDS |
| TGGAGAAGAAGTCTCTGCGG+AGG | 0.674342 | 4_1:+83111086 | Msa0578570:CDS |
| CCTAACACCAATGCAATTTG+GGG | 0.679734 | 4_1:-83110785 | None:intergenic |
| GTCCTTATTACTCAACGGCG+AGG | 0.680927 | 4_1:+83112997 | Msa0578570:CDS |
| GGAGCTGACCTTAACAAGAG+GGG | 0.682710 | 4_1:-83110897 | None:intergenic |
| ACAACCCCACCAGAAGGCAA+AGG | 0.683577 | 4_1:-83110503 | None:intergenic |
| GTAGGTGGGCTCAAAATCCG+AGG | 0.686992 | 4_1:+83112265 | Msa0578570:intron |
| CTGTCAACAAGATACACACA+CGG | 0.687428 | 4_1:-83110662 | None:intergenic |
| GATGGCTGTATCTTGCGCAA+AGG | 0.692151 | 4_1:+83112322 | Msa0578570:CDS |
| TATGGCCGATGAAAGTGTGA+TGG | 0.707459 | 4_1:+83110841 | Msa0578570:CDS |
| TACTGGAGAAGAAGTCTCTG+CGG | 0.708370 | 4_1:+83111083 | Msa0578570:CDS |
| GCTGGAAACTATGCAATGTG+TGG | 0.713945 | 4_1:+83112603 | Msa0578570:CDS |
| TGTGTGTATCTTGTTGACAG+TGG | 0.716426 | 4_1:+83110665 | Msa0578570:CDS |
| ATAACCCTACTGTTAAAGGG+GGG | 0.730300 | 4_1:+83110573 | Msa0578570:CDS |
| GCTAGAATATCTGTGATGGG+TGG | 0.747465 | 4_1:+83112666 | Msa0578570:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTATTTATTTATAATAAAAA+TGG | + | chr4_1:83113311-83113330 | Msa0578570:three_prime_UTR | 0.0% |
| !!! | TTATGTTTTTATTAACTTTA+TGG | + | chr4_1:83109817-83109836 | Msa0578570:intron | 10.0% |
| !!! | ATGAATTAAAAAAATTTGTT+TGG | + | chr4_1:83111905-83111924 | Msa0578570:intron | 10.0% |
| !! | AAATTGTAGTATATTTATAA+AGG | + | chr4_1:83112501-83112520 | Msa0578570:intron | 10.0% |
| !!! | AATACATCAAATTCTTTTTA+TGG | + | chr4_1:83110249-83110268 | Msa0578570:intron | 15.0% |
| !!! | ATACATCAAATTCTTTTTAT+GGG | + | chr4_1:83110250-83110269 | Msa0578570:intron | 15.0% |
| !! | TTCAGTTTATCATAAAATAT+AGG | - | chr4_1:83110301-83110320 | None:intergenic | 15.0% |
| !! | CATAAATACAATGATTAAAA+CGG | - | chr4_1:83111543-83111562 | None:intergenic | 15.0% |
| !! | AATATAAAAATAAAGTTCCA+TGG | - | chr4_1:83111577-83111596 | None:intergenic | 15.0% |
| !! | TTTATCTTGTGATAAATTAA+TGG | + | chr4_1:83112868-83112887 | Msa0578570:intron | 15.0% |
| !! | ACAAACAAAAATATGTAAAA+GGG | + | chr4_1:83113242-83113261 | Msa0578570:three_prime_UTR | 15.0% |
| !! | GAAAACATGTTTAAACTAAT+TGG | + | chr4_1:83109523-83109542 | Msa0578570:exon | 20.0% |
| !! | AACATAAAAAGTAGTAGTAA+TGG | - | chr4_1:83109804-83109823 | None:intergenic | 20.0% |
| !! | TTATTTCCATAAAATTTGTG+TGG | + | chr4_1:83110104-83110123 | Msa0578570:intron | 20.0% |
| !!! | TTTAGACAAACAAATTTGTT+GGG | - | chr4_1:83110175-83110194 | None:intergenic | 20.0% |
| !! | ATTTAGACAAACAAATTTGT+TGG | - | chr4_1:83110176-83110195 | None:intergenic | 20.0% |
| !! | TTTGTATTTACCATTCATTT+GGG | + | chr4_1:83110343-83110362 | Msa0578570:intron | 20.0% |
| !! | AGAAATGAGAAATACAAAAA+TGG | + | chr4_1:83110404-83110423 | Msa0578570:intron | 20.0% |
| !! | AGAAAATACATTATCACAAA+CGG | - | chr4_1:83111014-83111033 | None:intergenic | 20.0% |
| !! | CATTAATTGATTGACATTAT+AGG | + | chr4_1:83111056-83111075 | Msa0578570:intron | 20.0% |
| !! | AAATACAAGTTATGAGTATA+AGG | + | chr4_1:83111356-83111375 | Msa0578570:CDS | 20.0% |
| !!! | ATATTTTGTGAAACATTTAC+AGG | - | chr4_1:83111693-83111712 | None:intergenic | 20.0% |
| !!! | TGGAATTTTATTCAATGAAT+CGG | + | chr4_1:83111797-83111816 | Msa0578570:CDS | 20.0% |
| !!! | TTTAACAATTCTTGATTTGA+GGG | - | chr4_1:83112146-83112165 | None:intergenic | 20.0% |
| !! | TGTTTATAGAAAGAATATCT+AGG | - | chr4_1:83112169-83112188 | None:intergenic | 20.0% |
| !!! | ATTAGTTGATAATATTCATC+AGG | + | chr4_1:83112758-83112777 | Msa0578570:intron | 20.0% |
| !! | TCAGGTAAAAATATTGTTAT+TGG | + | chr4_1:83112833-83112852 | Msa0578570:intron | 20.0% |
| !!! | CAGGTAAAAATATTGTTATT+GGG | + | chr4_1:83112834-83112853 | Msa0578570:intron | 20.0% |
| !! | GACAAACAAAAATATGTAAA+AGG | + | chr4_1:83113241-83113260 | Msa0578570:three_prime_UTR | 20.0% |
| !! | TAAACATGTTTTCTCTTCTA+TGG | - | chr4_1:83109516-83109535 | None:intergenic | 25.0% |
| ! | TAATTGGAAGAAAATCAAGT+TGG | + | chr4_1:83109539-83109558 | Msa0578570:CDS | 25.0% |
| ! | AATTGGAAGAAAATCAAGTT+GGG | + | chr4_1:83109540-83109559 | Msa0578570:CDS | 25.0% |
| !! | GTAAATACAAAGAGTATGTT+TGG | - | chr4_1:83110334-83110353 | None:intergenic | 25.0% |
| ! | CTTTGTATTTACCATTCATT+TGG | + | chr4_1:83110342-83110361 | Msa0578570:intron | 25.0% |
| ! | AGATGTTTCTTAACTGTAAT+AGG | - | chr4_1:83110608-83110627 | None:intergenic | 25.0% |
| !! | TTTCCAGATAAGGAAAATTT+TGG | + | chr4_1:83110719-83110738 | Msa0578570:CDS | 25.0% |
| ! | TAGTTTCACATAAAGGATAT+TGG | - | chr4_1:83110943-83110962 | None:intergenic | 25.0% |
| ! | TTTAATTCATACCATGAATC+CGG | - | chr4_1:83111895-83111914 | None:intergenic | 25.0% |
| !! | GTTTAACAATTCTTGATTTG+AGG | - | chr4_1:83112147-83112166 | None:intergenic | 25.0% |
| ! | AACTATAACACATGTCTATT+TGG | + | chr4_1:83112243-83112262 | Msa0578570:intron | 25.0% |
| !! | CCAACAATTATAGTGATTTT+AGG | - | chr4_1:83112570-83112589 | None:intergenic | 25.0% |
| ! | CCTAAAATCACTATAATTGT+TGG | + | chr4_1:83112567-83112586 | Msa0578570:CDS | 25.0% |
| ! | AAAATCACTATAATTGTTGG+TGG | + | chr4_1:83112570-83112589 | Msa0578570:CDS | 25.0% |
| ! | ATTTGTCTCAATGTATATCA+TGG | + | chr4_1:83112899-83112918 | Msa0578570:intron | 25.0% |
| ! | ATATCATGGTTATAATACAG+TGG | + | chr4_1:83112913-83112932 | Msa0578570:intron | 25.0% |
| ! | CATTCTAAATACACCATATT+TGG | - | chr4_1:83113114-83113133 | None:intergenic | 25.0% |
| !! | TGATGTAGATTTGTTTACAT+GGG | + | chr4_1:83113190-83113209 | Msa0578570:three_prime_UTR | 25.0% |
| ACCTTTCTTCTTCTAAGTAA+AGG | - | chr4_1:83109483-83109502 | None:intergenic | 30.0% | |
| TTCTCTTCTTGACAGTAAAT+TGG | - | chr4_1:83109572-83109591 | None:intergenic | 30.0% | |
| TCAAGAAGAGAATTGTGTTT+GGG | + | chr4_1:83109580-83109599 | Msa0578570:CDS | 30.0% | |
| CAAGTAACTATTAGACTAGT+TGG | + | chr4_1:83109886-83109905 | Msa0578570:intron | 30.0% | |
| TCATAGCTGAAAATAGCTTA+TGG | - | chr4_1:83109941-83109960 | None:intergenic | 30.0% | |
| AATCCAACAAACATTTGACA+TGG | + | chr4_1:83109968-83109987 | Msa0578570:intron | 30.0% | |
| TGACATTGCCTTAATATCTA+AGG | + | chr4_1:83109994-83110013 | Msa0578570:intron | 30.0% | |
| ! | CCTTAATATCTAAGGTATGT+CGG | + | chr4_1:83110002-83110021 | Msa0578570:intron | 30.0% |
| ! | ATGTCGGAAAATAGTGTTTT+TGG | + | chr4_1:83110018-83110037 | Msa0578570:intron | 30.0% |
| ATTGCTACACATAACTGTTT+AGG | + | chr4_1:83110196-83110215 | Msa0578570:intron | 30.0% | |
| TTGTGTGTTTATCTCAAGAA+AGG | + | chr4_1:83110428-83110447 | Msa0578570:intron | 30.0% | |
| CAAATAACCCTACTGTTAAA+GGG | + | chr4_1:83110570-83110589 | Msa0578570:CDS | 30.0% | |
| AAATAACCCTACTGTTAAAG+GGG | + | chr4_1:83110571-83110590 | Msa0578570:CDS | 30.0% | |
| ! | CTACCAAAATTTTCCTTATC+TGG | - | chr4_1:83110725-83110744 | None:intergenic | 30.0% |
| TGGTAGAATATTCTATAACC+AGG | + | chr4_1:83110739-83110758 | Msa0578570:CDS | 30.0% | |
| !!! | AATGGCACTATTTTTTTAGC+AGG | + | chr4_1:83110872-83110891 | Msa0578570:CDS | 30.0% |
| !!! | ATGGCACTATTTTTTTAGCA+GGG | + | chr4_1:83110873-83110892 | Msa0578570:CDS | 30.0% |
| ATCCTTTATGTGAAACTATC+TGG | + | chr4_1:83110945-83110964 | Msa0578570:intron | 30.0% | |
| !! | TATTTTGCTCAAGGTATTTG+TGG | + | chr4_1:83111156-83111175 | Msa0578570:intron | 30.0% |
| AGTTCATTGACATCATATAG+TGG | - | chr4_1:83111384-83111403 | None:intergenic | 30.0% | |
| GATGAATTCAAGAAACTGTA+TGG | + | chr4_1:83111486-83111505 | Msa0578570:CDS | 30.0% | |
| CTGCACATAGATTTCAAATA+AGG | - | chr4_1:83111718-83111737 | None:intergenic | 30.0% | |
| TTGTTTCCAATAATTCCTAC+AGG | - | chr4_1:83111777-83111796 | None:intergenic | 30.0% | |
| GTAGGAATTATTGGAAACAA+TGG | + | chr4_1:83111777-83111796 | Msa0578570:CDS | 30.0% | |
| GTAATTAGGACACAAAATGA+TGG | - | chr4_1:83112053-83112072 | None:intergenic | 30.0% | |
| CAACAACTATGACTGTAATT+AGG | - | chr4_1:83112067-83112086 | None:intergenic | 30.0% | |
| TTGTCTGGAAATGATTAGAA+TGG | + | chr4_1:83112084-83112103 | Msa0578570:intron | 30.0% | |
| ACAAATTTGAGCTAAGATGT+TGG | + | chr4_1:83112186-83112205 | Msa0578570:intron | 30.0% | |
| ! | TTTTCATCAAACTACTAGCA+GGG | - | chr4_1:83112219-83112238 | None:intergenic | 30.0% |
| ! | TTTTTCATCAAACTACTAGC+AGG | - | chr4_1:83112220-83112239 | None:intergenic | 30.0% |
| ATAACACATGTCTATTTGGT+AGG | + | chr4_1:83112247-83112266 | Msa0578570:intron | 30.0% | |
| GAATGTTATAAATAGTGTGC+TGG | - | chr4_1:83112358-83112377 | None:intergenic | 30.0% | |
| ATCACAGATATTCTAGCATT+AGG | - | chr4_1:83112663-83112682 | None:intergenic | 30.0% | |
| TAATGCTAGAATATCTGTGA+TGG | + | chr4_1:83112662-83112681 | Msa0578570:CDS | 30.0% | |
| AATGCTAGAATATCTGTGAT+GGG | + | chr4_1:83112663-83112682 | Msa0578570:CDS | 30.0% | |
| CATGATTCCTTACAAATTAC+TGG | + | chr4_1:83112714-83112733 | Msa0578570:intron | 30.0% | |
| AAAGGCAATAAGAAAAAGCA+AGG | + | chr4_1:83112807-83112826 | Msa0578570:CDS | 30.0% | |
| TAAGAAAAAGCAAGGAATTC+AGG | + | chr4_1:83112815-83112834 | Msa0578570:CDS | 30.0% | |
| ! | AAATATTGTTATTGGGAGCA+AGG | + | chr4_1:83112841-83112860 | Msa0578570:intron | 30.0% |
| ACAAATCTACATCAGACTTT+AGG | - | chr4_1:83113184-83113203 | None:intergenic | 30.0% | |
| ! | CTGATGTAGATTTGTTTACA+TGG | + | chr4_1:83113189-83113208 | Msa0578570:three_prime_UTR | 30.0% |
| TTCCAGCTAAGTATGTCTAT+CGG | - | chr4_1:83109415-83109434 | None:intergenic | 35.0% | |
| GCCTTTACTTAGAAGAAGAA+AGG | + | chr4_1:83109479-83109498 | Msa0578570:five_prime_UTR | 35.0% | |
| CTTCTTGACAGTAAATTGGA+GGG | - | chr4_1:83109568-83109587 | None:intergenic | 35.0% | |
| TCTTCTTGACAGTAAATTGG+AGG | - | chr4_1:83109569-83109588 | None:intergenic | 35.0% | |
| GTCAAGAAGAGAATTGTGTT+TGG | + | chr4_1:83109579-83109598 | Msa0578570:CDS | 35.0% | |
| ACTCCAATCTCATGTTCATA+AGG | + | chr4_1:83109645-83109664 | Msa0578570:CDS | 35.0% | |
| GAACCTTATGAACATGAGAT+TGG | - | chr4_1:83109651-83109670 | None:intergenic | 35.0% | |
| ! | ACTATTCCTTTTCACAGCTT+CGG | - | chr4_1:83109689-83109708 | None:intergenic | 35.0% |
| AGACGATCAATTCTTTCTCT+TGG | - | chr4_1:83109730-83109749 | None:intergenic | 35.0% | |
| AAGCTCTCAAAAACACCTTA+TGG | + | chr4_1:83109910-83109929 | Msa0578570:intron | 35.0% | |
| CCGACATACCTTAGATATTA+AGG | - | chr4_1:83110005-83110024 | None:intergenic | 35.0% | |
| !! | TGTTCATGCTTTAAAGTGAG+AGG | + | chr4_1:83110056-83110075 | Msa0578570:intron | 35.0% |
| ! | GAGCAACCACACAAATTTTA+TGG | - | chr4_1:83110113-83110132 | None:intergenic | 35.0% |
| AAAATTTGTGTGGTTGCTCA+TGG | + | chr4_1:83110114-83110133 | Msa0578570:intron | 35.0% | |
| !! | ACAAATTTGTTGGGTCATGA+GGG | - | chr4_1:83110166-83110185 | None:intergenic | 35.0% |
| !! | AACAAATTTGTTGGGTCATG+AGG | - | chr4_1:83110167-83110186 | None:intergenic | 35.0% |
| ! | TTACCATTCATTTGGGTTTG+TGG | + | chr4_1:83110350-83110369 | Msa0578570:intron | 35.0% |
| TTTCCACAAACCCAAATGAA+TGG | - | chr4_1:83110356-83110375 | None:intergenic | 35.0% | |
| TTGCCACAAACATACAAAGT+CGG | - | chr4_1:83110553-83110572 | None:intergenic | 35.0% | |
| GCAAATAACCCTACTGTTAA+AGG | + | chr4_1:83110569-83110588 | Msa0578570:CDS | 35.0% | |
| AATAACCCTACTGTTAAAGG+GGG | + | chr4_1:83110572-83110591 | Msa0578570:CDS | 35.0% | |
| AGCCAGATAGTTTCACATAA+AGG | - | chr4_1:83110950-83110969 | None:intergenic | 35.0% | |
| ! | GTTTCAGACTATTTTGCTCA+AGG | + | chr4_1:83111147-83111166 | Msa0578570:CDS | 35.0% |
| ACAATGTCACTAATACAGAC+TGG | - | chr4_1:83111231-83111250 | None:intergenic | 35.0% | |
| AGAGCATGAAATTCATCTAC+AGG | - | chr4_1:83111267-83111286 | None:intergenic | 35.0% | |
| AATTTCATGCTCTTGCACTT+GGG | + | chr4_1:83111274-83111293 | Msa0578570:CDS | 35.0% | |
| CATCGTCAAGAATTTGCATA+TGG | + | chr4_1:83111302-83111321 | Msa0578570:CDS | 35.0% | |
| TCAAGAATTTGCATATGGCT+GGG | + | chr4_1:83111307-83111326 | Msa0578570:CDS | 35.0% | |
| ! | ATCAAACTGCTGCTTAAGAT+CGG | - | chr4_1:83111424-83111443 | None:intergenic | 35.0% |
| TTTATGTGAATGTGTTGCCA+TGG | + | chr4_1:83111557-83111576 | Msa0578570:intron | 35.0% | |
| ! | ATGAGTTGACAGACCTTTAT+CGG | + | chr4_1:83111610-83111629 | Msa0578570:CDS | 35.0% |
| !!! | CTTTATCGGTTGTTGGTTTT+CGG | + | chr4_1:83111624-83111643 | Msa0578570:CDS | 35.0% |
| !!! | TTTATCGGTTGTTGGTTTTC+GGG | + | chr4_1:83111625-83111644 | Msa0578570:CDS | 35.0% |
| CGGGTTTCACAATGAATATT+TGG | + | chr4_1:83111644-83111663 | Msa0578570:CDS | 35.0% | |
| ! | ACAGGTTTTGCAAAGATCTT+TGG | + | chr4_1:83111747-83111766 | Msa0578570:CDS | 35.0% |
| !! | ATGTTCTGAAGAAAGACCAA+GGG | - | chr4_1:83111870-83111889 | None:intergenic | 35.0% |
| ATTCTGACTTCAGAGAAGAT+TGG | + | chr4_1:83111959-83111978 | Msa0578570:intron | 35.0% | |
| TTACAGTCATAGTTGTTGTC+TGG | + | chr4_1:83112069-83112088 | Msa0578570:intron | 35.0% | |
| GGAAATGATTAGAATGGTGA+AGG | + | chr4_1:83112090-83112109 | Msa0578570:intron | 35.0% | |
| TTCGCATAAATATCTGCTAC+AGG | + | chr4_1:83112542-83112561 | Msa0578570:intron | 35.0% | |
| ! | ATAATTGTTGGTGGAAGCTT+TGG | + | chr4_1:83112579-83112598 | Msa0578570:CDS | 35.0% |
| ATATTCTAGCATTAGGCCAA+AGG | - | chr4_1:83112656-83112675 | None:intergenic | 35.0% | |
| TCCTTACAAATTACTGGACT+TGG | + | chr4_1:83112720-83112739 | Msa0578570:intron | 35.0% | |
| ! | TCCAAGTCCAGTAATTTGTA+AGG | - | chr4_1:83112724-83112743 | None:intergenic | 35.0% |
| GTTCTGTCTCAAATAGAGAA+AGG | + | chr4_1:83112789-83112808 | Msa0578570:CDS | 35.0% | |
| GGTTATAATACAGTGGAACA+AGG | + | chr4_1:83112920-83112939 | Msa0578570:intron | 35.0% | |
| AGGAAGTCCTTATTACTCAA+CGG | + | chr4_1:83112992-83113011 | Msa0578570:CDS | 35.0% | |
| !! | ATCACTTTTCTTGTATCAGC+TGG | - | chr4_1:83113047-83113066 | None:intergenic | 35.0% |
| GCTGATACAAGAAAAGTGAT+TGG | + | chr4_1:83113047-83113066 | Msa0578570:CDS | 35.0% | |
| ! | ATTTGGTATTTTCTGTCGCA+CGG | - | chr4_1:83113097-83113116 | None:intergenic | 35.0% |
| GCGACAGAAAATACCAAATA+TGG | + | chr4_1:83113098-83113117 | Msa0578570:CDS | 35.0% | |
| ATTTGTTTACATGGGAAGAG+AGG | + | chr4_1:83113198-83113217 | Msa0578570:three_prime_UTR | 35.0% | |
| GCTAAGTATGTCTATCGGAT+CGG | - | chr4_1:83109410-83109429 | None:intergenic | 40.0% | |
| ATCCGATAGACATACTTAGC+TGG | + | chr4_1:83109410-83109429 | Msa0578570:five_prime_UTR | 40.0% | |
| GGCAAGAATTAATAATGCCG+TGG | - | chr4_1:83109462-83109481 | None:intergenic | 40.0% | |
| CATGTTCATAAGGTTCTTGC+TGG | + | chr4_1:83109655-83109674 | Msa0578570:CDS | 40.0% | |
| ! | CTATTCCTTTTCACAGCTTC+GGG | - | chr4_1:83109688-83109707 | None:intergenic | 40.0% |
| ATTGATCGTCTTCTTGATCC+TGG | + | chr4_1:83109739-83109758 | Msa0578570:CDS | 40.0% | |
| TTCTTTCCTTGAGCTTTCAC+AGG | + | chr4_1:83109765-83109784 | Msa0578570:CDS | 40.0% | |
| TAAGAACCTGTGAAAGCTCA+AGG | - | chr4_1:83109774-83109793 | None:intergenic | 40.0% | |
| TAGCTTATGGACATGCCATA+AGG | - | chr4_1:83109928-83109947 | None:intergenic | 40.0% | |
| GTGCCATGTCAAATGTTTGT+TGG | - | chr4_1:83109974-83109993 | None:intergenic | 40.0% | |
| !! | CAAATTTGTTGGGTCATGAG+GGG | - | chr4_1:83110165-83110184 | None:intergenic | 40.0% |
| TGAGTGAATATGAAGCTTGC+AGG | + | chr4_1:83110461-83110480 | Msa0578570:intron | 40.0% | |
| ATAACCCTACTGTTAAAGGG+GGG | + | chr4_1:83110573-83110592 | Msa0578570:CDS | 40.0% | |
| TAAGAAACATCTCAGAGCAC+AGG | + | chr4_1:83110616-83110635 | Msa0578570:CDS | 40.0% | |
| CTGTCAACAAGATACACACA+CGG | - | chr4_1:83110665-83110684 | None:intergenic | 40.0% | |
| TGTGTGTATCTTGTTGACAG+TGG | + | chr4_1:83110665-83110684 | Msa0578570:CDS | 40.0% | |
| AGGCTATAATGTCTGCTCAA+GGG | + | chr4_1:83110759-83110778 | Msa0578570:CDS | 40.0% | |
| CCTAACACCAATGCAATTTG+GGG | - | chr4_1:83110788-83110807 | None:intergenic | 40.0% | |
| GCCTAACACCAATGCAATTT+GGG | - | chr4_1:83110789-83110808 | None:intergenic | 40.0% | |
| AGCCTAACACCAATGCAATT+TGG | - | chr4_1:83110790-83110809 | None:intergenic | 40.0% | |
| CTTGACCATCACACTTTCAT+CGG | - | chr4_1:83110849-83110868 | None:intergenic | 40.0% | |
| ! | GATGAAAGTGTGATGGTCAA+GGG | + | chr4_1:83110848-83110867 | Msa0578570:CDS | 40.0% |
| !! | GAGCATAAGATAAGAGTGTC+TGG | - | chr4_1:83110921-83110940 | None:intergenic | 40.0% |
| TTGACATTATAGGCTGCTAC+TGG | + | chr4_1:83111066-83111085 | Msa0578570:intron | 40.0% | |
| ! | TTTGCTCAAGGTATTTGTGG+TGG | + | chr4_1:83111159-83111178 | Msa0578570:intron | 40.0% |
| GAATTTCATGCTCTTGCACT+TGG | + | chr4_1:83111273-83111292 | Msa0578570:CDS | 40.0% | |
| GTCAAGAATTTGCATATGGC+TGG | + | chr4_1:83111306-83111325 | Msa0578570:CDS | 40.0% | |
| CAATGCGAGAAATCACTTCT+CGG | - | chr4_1:83111449-83111468 | None:intergenic | 40.0% | |
| GTGATTTCTCGCATTGTTGA+CGG | + | chr4_1:83111453-83111472 | Msa0578570:CDS | 40.0% | |
| CGAAAACCAACAACCGATAA+AGG | - | chr4_1:83111626-83111645 | None:intergenic | 40.0% | |
| TACAGGTTGCTGCATATACT+TGG | - | chr4_1:83111676-83111695 | None:intergenic | 40.0% | |
| TATGTGCAGACTCTTGTAAC+AGG | + | chr4_1:83111729-83111748 | Msa0578570:CDS | 40.0% | |
| !! | TTCAATGAATCGGCTCTGAA+AGG | + | chr4_1:83111807-83111826 | Msa0578570:CDS | 40.0% |
| !! | TCAATGAATCGGCTCTGAAA+GGG | + | chr4_1:83111808-83111827 | Msa0578570:CDS | 40.0% |
| TACTCAACGTAACATTCCCT+TGG | + | chr4_1:83111851-83111870 | Msa0578570:CDS | 40.0% | |
| !! | GATGTTCTGAAGAAAGACCA+AGG | - | chr4_1:83111871-83111890 | None:intergenic | 40.0% |
| GTCTTTCTTCAGAACATCAC+CGG | + | chr4_1:83111873-83111892 | Msa0578570:CDS | 40.0% | |
| !! | AATGATGTTCTGAGGAGAGA+AGG | - | chr4_1:83111987-83112006 | None:intergenic | 40.0% |
| TTCTCTCCTCAGAACATCAT+TGG | + | chr4_1:83111986-83112005 | Msa0578570:intron | 40.0% | |
| TCCTCAGAACATCATTGGAT+TGG | + | chr4_1:83111991-83112010 | Msa0578570:intron | 40.0% | |
| ACCAATCCAATGATGTTCTG+AGG | - | chr4_1:83111995-83112014 | None:intergenic | 40.0% | |
| ACACATGTCTATTTGGTAGG+TGG | + | chr4_1:83112250-83112269 | Msa0578570:intron | 40.0% | |
| CACATGTCTATTTGGTAGGT+GGG | + | chr4_1:83112251-83112270 | Msa0578570:intron | 40.0% | |
| AGCAAAGTCAGGTGCAAAAA+TGG | + | chr4_1:83112298-83112317 | Msa0578570:CDS | 40.0% | |
| !!! | TTCGCTGCATGTGTTGTTTT+GGG | + | chr4_1:83112405-83112424 | Msa0578570:intron | 40.0% |
| GAACATGAAGTTCGGACTAT+AGG | - | chr4_1:83112634-83112653 | None:intergenic | 40.0% | |
| GATAATATTCATCAGGCTGC+TGG | + | chr4_1:83112765-83112784 | Msa0578570:intron | 40.0% | |
| GTTCAAAGCGAAAGTAGTTG+AGG | + | chr4_1:83112956-83112975 | Msa0578570:CDS | 40.0% | |
| ! | TGTTGCAAGTTGACATGATC+AGG | - | chr4_1:83113290-83113309 | None:intergenic | 40.0% |
| AGTATGTCTATCGGATCGGA+GGG | - | chr4_1:83109406-83109425 | None:intergenic | 45.0% | |
| AAGTATGTCTATCGGATCGG+AGG | - | chr4_1:83109407-83109426 | None:intergenic | 45.0% | |
| AGCAGAGTTCAATGACTCCA+CGG | + | chr4_1:83109442-83109461 | Msa0578570:five_prime_UTR | 45.0% | |
| GTTCATAAGGTTCTTGCTGG+TGG | + | chr4_1:83109658-83109677 | Msa0578570:CDS | 45.0% | |
| AGCTCAAGGAAAGAAGAACC+AGG | - | chr4_1:83109760-83109779 | None:intergenic | 45.0% | |
| TATGAAGAGCCTTTGCCTTC+TGG | + | chr4_1:83110494-83110513 | Msa0578570:CDS | 45.0% | |
| ! | TGGCCGACTTTGTATGTTTG+TGG | + | chr4_1:83110547-83110566 | Msa0578570:CDS | 45.0% |
| AAGTCCCCCCTTTAACAGTA+GGG | - | chr4_1:83110580-83110599 | None:intergenic | 45.0% | |
| TAAGTCCCCCCTTTAACAGT+AGG | - | chr4_1:83110581-83110600 | None:intergenic | 45.0% | |
| GTGTATCTTGTTGACAGTGG+TGG | + | chr4_1:83110668-83110687 | Msa0578570:CDS | 45.0% | |
| GGCTGATGTCTTTCCAGATA+AGG | + | chr4_1:83110709-83110728 | Msa0578570:CDS | 45.0% | |
| CTTGAGCAGACATTATAGCC+TGG | - | chr4_1:83110760-83110779 | None:intergenic | 45.0% | |
| CAGGCTATAATGTCTGCTCA+AGG | + | chr4_1:83110758-83110777 | Msa0578570:CDS | 45.0% | |
| AGGGATTCCCCAAATTGCAT+TGG | + | chr4_1:83110778-83110797 | Msa0578570:CDS | 45.0% | |
| ! | CCCCAAATTGCATTGGTGTT+AGG | + | chr4_1:83110785-83110804 | Msa0578570:CDS | 45.0% |
| TGGTGCCTATATACCTGCTA+TGG | + | chr4_1:83110823-83110842 | Msa0578570:CDS | 45.0% | |
| ATCGGCCATAGCAGGTATAT+AGG | - | chr4_1:83110831-83110850 | None:intergenic | 45.0% | |
| ! | TATGGCCGATGAAAGTGTGA+TGG | + | chr4_1:83110841-83110860 | Msa0578570:CDS | 45.0% |
| ! | CGATGAAAGTGTGATGGTCA+AGG | + | chr4_1:83110847-83110866 | Msa0578570:CDS | 45.0% |
| AGTGTGATGGTCAAGGGAAA+TGG | + | chr4_1:83110854-83110873 | Msa0578570:CDS | 45.0% | |
| TGGAGCTGACCTTAACAAGA+GGG | - | chr4_1:83110901-83110920 | None:intergenic | 45.0% | |
| TACTGGAGAAGAAGTCTCTG+CGG | + | chr4_1:83111083-83111102 | Msa0578570:CDS | 45.0% | |
| TGCAGTACACTGCAAGACTT+CGG | + | chr4_1:83111122-83111141 | Msa0578570:CDS | 45.0% | |
| GGTGGATATGCACATCTAAG+TGG | + | chr4_1:83111177-83111196 | Msa0578570:intron | 45.0% | |
| ! | ACTGCTGCTTAAGATCGGTA+GGG | - | chr4_1:83111419-83111438 | None:intergenic | 45.0% |
| ! | AACTGCTGCTTAAGATCGGT+AGG | - | chr4_1:83111420-83111439 | None:intergenic | 45.0% |
| AGAAACTGTATGGCACTGTG+AGG | + | chr4_1:83111496-83111515 | Msa0578570:intron | 45.0% | |
| GAAACTGTATGGCACTGTGA+GGG | + | chr4_1:83111497-83111516 | Msa0578570:intron | 45.0% | |
| CTGTCAACTCATCAAGCTTC+AGG | - | chr4_1:83111602-83111621 | None:intergenic | 45.0% | |
| ! | GACAGACCTTTATCGGTTGT+TGG | + | chr4_1:83111617-83111636 | Msa0578570:CDS | 45.0% |
| AAGATCTTTGGACAGCCTGT+AGG | + | chr4_1:83111759-83111778 | Msa0578570:CDS | 45.0% | |
| GGACAGCCTGTAGGAATTAT+TGG | + | chr4_1:83111768-83111787 | Msa0578570:CDS | 45.0% | |
| !! | CAATGAATCGGCTCTGAAAG+GGG | + | chr4_1:83111809-83111828 | Msa0578570:CDS | 45.0% |
| TCAGAACATCACCGGATTCA+TGG | + | chr4_1:83111881-83111900 | Msa0578570:CDS | 45.0% | |
| ! | CTTTGCTATGCCATTTGCCT+CGG | - | chr4_1:83112285-83112304 | None:intergenic | 45.0% |
| GCAAATGGCATAGCAAAGTC+AGG | + | chr4_1:83112287-83112306 | Msa0578570:CDS | 45.0% | |
| GTCAGGTGCAAAAATGGTGA+TGG | + | chr4_1:83112304-83112323 | Msa0578570:CDS | 45.0% | |
| GTATCTTGCGCAAAGGTTAG+TGG | + | chr4_1:83112329-83112348 | Msa0578570:intron | 45.0% | |
| !!! | GTTCGCTGCATGTGTTGTTT+TGG | + | chr4_1:83112404-83112423 | Msa0578570:intron | 45.0% |
| !!! | TCGCTGCATGTGTTGTTTTG+GGG | + | chr4_1:83112406-83112425 | Msa0578570:intron | 45.0% |
| GCTGGAAACTATGCAATGTG+TGG | + | chr4_1:83112603-83112622 | Msa0578570:CDS | 45.0% | |
| GTCCGAACTTCATGTTCCTT+TGG | + | chr4_1:83112637-83112656 | Msa0578570:CDS | 45.0% | |
| GGCCAAAGGAACATGAAGTT+CGG | - | chr4_1:83112642-83112661 | None:intergenic | 45.0% | |
| ! | GCTAGAATATCTGTGATGGG+TGG | + | chr4_1:83112666-83112685 | Msa0578570:CDS | 45.0% |
| ACAGTGGAACAAGGAAGAAG+AGG | + | chr4_1:83112929-83112948 | Msa0578570:intron | 45.0% | |
| ! | ATTTTCTGTCGCACGGTTCA+AGG | - | chr4_1:83113090-83113109 | None:intergenic | 45.0% |
| TGTTTACATGGGAAGAGAGG+TGG | + | chr4_1:83113201-83113220 | Msa0578570:three_prime_UTR | 45.0% | |
| GTTTACATGGGAAGAGAGGT+GGG | + | chr4_1:83113202-83113221 | Msa0578570:three_prime_UTR | 45.0% | |
| ! | GCAAGTTGACATGATCAGGA+AGG | - | chr4_1:83113286-83113305 | None:intergenic | 45.0% |
| TGTTTGGGTGCCCTTCCTAA+TGG | + | chr4_1:83109595-83109614 | Msa0578570:CDS | 50.0% | |
| CATAGCTCCGCCATTAGGAA+GGG | - | chr4_1:83109608-83109627 | None:intergenic | 50.0% | |
| TGTTCCATAGCTCCGCCATT+AGG | - | chr4_1:83109613-83109632 | None:intergenic | 50.0% | |
| CATAAGGTTCTTGCTGGTGG+TGG | + | chr4_1:83109661-83109680 | Msa0578570:CDS | 50.0% | |
| TGGTTGCTCATGGCCTAATG+TGG | + | chr4_1:83110124-83110143 | Msa0578570:intron | 50.0% | |
| CTCAGGGGATCATCCACATT+AGG | - | chr4_1:83110140-83110159 | None:intergenic | 50.0% | |
| AAGAGCCTTTGCCTTCTGGT+GGG | + | chr4_1:83110498-83110517 | Msa0578570:CDS | 50.0% | |
| ATACAAAGTCGGCCATGCAC+TGG | - | chr4_1:83110542-83110561 | None:intergenic | 50.0% | |
| TCTCAGAGCACAGGAGATTG+CGG | + | chr4_1:83110625-83110644 | Msa0578570:CDS | 50.0% | |
| GGAAAGACATCAGCCTGCTT+GGG | - | chr4_1:83110704-83110723 | None:intergenic | 50.0% | |
| TGGAAAGACATCAGCCTGCT+TGG | - | chr4_1:83110705-83110724 | None:intergenic | 50.0% | |
| ACACTTTCATCGGCCATAGC+AGG | - | chr4_1:83110839-83110858 | None:intergenic | 50.0% | |
| GAGCTGACCTTAACAAGAGG+GGG | - | chr4_1:83110899-83110918 | None:intergenic | 50.0% | |
| GGAGCTGACCTTAACAAGAG+GGG | - | chr4_1:83110900-83110919 | None:intergenic | 50.0% | |
| CTGGAGCTGACCTTAACAAG+AGG | - | chr4_1:83110902-83110921 | None:intergenic | 50.0% | |
| AGAAGTCTCTGCGGAGGATT+TGG | + | chr4_1:83111092-83111111 | Msa0578570:CDS | 50.0% | |
| GAAGTCTCTGCGGAGGATTT+GGG | + | chr4_1:83111093-83111112 | Msa0578570:CDS | 50.0% | |
| GCAGTACACTGCAAGACTTC+GGG | + | chr4_1:83111123-83111142 | Msa0578570:CDS | 50.0% | |
| TTCATGCTCTTGCACTTGGG+AGG | + | chr4_1:83111277-83111296 | Msa0578570:CDS | 50.0% | |
| TCATGCTCTTGCACTTGGGA+GGG | + | chr4_1:83111278-83111297 | Msa0578570:CDS | 50.0% | |
| GGGAGAGATGTCTCGACAAA+TGG | + | chr4_1:83111327-83111346 | Msa0578570:CDS | 50.0% | |
| ! | CTGCTGCTTAAGATCGGTAG+GGG | - | chr4_1:83111418-83111437 | None:intergenic | 50.0% |
| GGCTCAAAATCCGAGGCAAA+TGG | + | chr4_1:83112272-83112291 | Msa0578570:CDS | 50.0% | |
| GATGGCTGTATCTTGCGCAA+AGG | + | chr4_1:83112322-83112341 | Msa0578570:CDS | 50.0% | |
| !!! | GTGTTGTTTTGGGGCAGTGA+CGG | + | chr4_1:83112415-83112434 | Msa0578570:intron | 50.0% |
| GTTGAGGCGTATGAGAGAGA+AGG | + | chr4_1:83112972-83112991 | Msa0578570:CDS | 50.0% | |
| GTCCTTATTACTCAACGGCG+AGG | + | chr4_1:83112997-83113016 | Msa0578570:CDS | 50.0% | |
| AGCCTCGCCGTTGAGTAATA+AGG | - | chr4_1:83113002-83113021 | None:intergenic | 50.0% | |
| ATTACTCAACGGCGAGGCTT+TGG | + | chr4_1:83113003-83113022 | Msa0578570:CDS | 50.0% | |
| TTACTCAACGGCGAGGCTTT+GGG | + | chr4_1:83113004-83113023 | Msa0578570:CDS | 50.0% | |
| TGTCTATCGGATCGGAGGGA+TGG | - | chr4_1:83109402-83109421 | None:intergenic | 55.0% | |
| TTGGGTGCCCTTCCTAATGG+CGG | + | chr4_1:83109598-83109617 | Msa0578570:CDS | 55.0% | |
| CCATAGCTCCGCCATTAGGA+AGG | - | chr4_1:83109609-83109628 | None:intergenic | 55.0% | |
| ! | CCTTCCTAATGGCGGAGCTA+TGG | + | chr4_1:83109606-83109625 | Msa0578570:CDS | 55.0% |
| GTGGACCCGAAGCTGTGAAA+AGG | + | chr4_1:83109680-83109699 | Msa0578570:CDS | 55.0% | |
| GAAGAGCCTTTGCCTTCTGG+TGG | + | chr4_1:83110497-83110516 | Msa0578570:CDS | 55.0% | |
| AGAGCCTTTGCCTTCTGGTG+GGG | + | chr4_1:83110499-83110518 | Msa0578570:CDS | 55.0% | |
| ACAACCCCACCAGAAGGCAA+AGG | - | chr4_1:83110506-83110525 | None:intergenic | 55.0% | |
| CTTCTGGTGGGGTTGTGACT+GGG | + | chr4_1:83110510-83110529 | Msa0578570:CDS | 55.0% | |
| TGGTGCTTTCCTTCCCAAGC+AGG | + | chr4_1:83110688-83110707 | Msa0578570:CDS | 55.0% | |
| AGACATCAGCCTGCTTGGGA+AGG | - | chr4_1:83110700-83110719 | None:intergenic | 55.0% | |
| GTGTTAGGCTCTTGCACTGC+TGG | + | chr4_1:83110800-83110819 | Msa0578570:CDS | 55.0% | |
| TTAGGCTCTTGCACTGCTGG+TGG | + | chr4_1:83110803-83110822 | Msa0578570:CDS | 55.0% | |
| TGGAGAAGAAGTCTCTGCGG+AGG | + | chr4_1:83111086-83111105 | Msa0578570:CDS | 55.0% | |
| ! | GTAGGTGGGCTCAAAATCCG+AGG | + | chr4_1:83112265-83112284 | Msa0578570:intron | 55.0% |
| ! | GTTGGTGGAAGCTTTGGTGC+TGG | + | chr4_1:83112585-83112604 | Msa0578570:CDS | 55.0% |
| !! | ATCTGTGATGGGTGGTGCTC+AGG | + | chr4_1:83112674-83112693 | Msa0578570:CDS | 55.0% |
| GAGAGGTGGGAGAGGTTGAA+TGG | + | chr4_1:83113215-83113234 | Msa0578570:three_prime_UTR | 55.0% | |
| TGGGTCATGAGGGGAGCTCA+GGG | - | chr4_1:83110156-83110175 | None:intergenic | 60.0% | |
| TTGGGTCATGAGGGGAGCTC+AGG | - | chr4_1:83110157-83110176 | None:intergenic | 60.0% | |
| CCAGTCACAACCCCACCAGA+AGG | - | chr4_1:83110512-83110531 | None:intergenic | 60.0% | |
| CCTTCTGGTGGGGTTGTGAC+TGG | + | chr4_1:83110509-83110528 | Msa0578570:CDS | 60.0% | |
| GGTGGGGTTGTGACTGGGAT+CGG | + | chr4_1:83110515-83110534 | Msa0578570:CDS | 60.0% | |
| ACTGGGATCGGTCCAGTGCA+TGG | + | chr4_1:83110527-83110546 | Msa0578570:CDS | 60.0% | |
| AGCAGGGCCCCCTCTTGTTA+AGG | + | chr4_1:83110889-83110908 | Msa0578570:CDS | 60.0% | |
| GTCTCTGCGGAGGATTTGGG+AGG | + | chr4_1:83111096-83111115 | Msa0578570:CDS | 60.0% | |
| !!! | GTTTTGGGGCAGTGACGGTG+AGG | + | chr4_1:83112420-83112439 | Msa0578570:intron | 60.0% |
| !! | ACGGCGAGGCTTTGGGATGA+TGG | + | chr4_1:83113011-83113030 | Msa0578570:CDS | 60.0% |
| CATGGGAAGAGAGGTGGGAG+AGG | + | chr4_1:83113207-83113226 | Msa0578570:three_prime_UTR | 60.0% | |
| GGGTCATGAGGGGAGCTCAG+GGG | - | chr4_1:83110155-83110174 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 83109378 | 83113340 | 83109378 | ID=Msa0578570;Name=Msa0578570 |
| chr4_1 | mRNA | 83109378 | 83113340 | 83109378 | ID=Msa0578570-mRNA-1;Parent=Msa0578570;Name=Msa0578570-mRNA-1;_AED=0.21;_eAED=0.21;_QI=151|0.87|0.88|1|1|1|9|204|596 |
| chr4_1 | exon | 83109378 | 83109786 | 83109378 | ID=Msa0578570-mRNA-1:exon:30257;Parent=Msa0578570-mRNA-1 |
| chr4_1 | exon | 83110476 | 83110910 | 83110476 | ID=Msa0578570-mRNA-1:exon:30258;Parent=Msa0578570-mRNA-1 |
| chr4_1 | exon | 83111078 | 83111168 | 83111078 | ID=Msa0578570-mRNA-1:exon:30259;Parent=Msa0578570-mRNA-1 |
| chr4_1 | exon | 83111271 | 83111512 | 83111271 | ID=Msa0578570-mRNA-1:exon:30260;Parent=Msa0578570-mRNA-1 |
| chr4_1 | exon | 83111606 | 83111902 | 83111606 | ID=Msa0578570-mRNA-1:exon:30261;Parent=Msa0578570-mRNA-1 |
| chr4_1 | exon | 83112269 | 83112343 | 83112269 | ID=Msa0578570-mRNA-1:exon:30262;Parent=Msa0578570-mRNA-1 |
| chr4_1 | exon | 83112564 | 83112695 | 83112564 | ID=Msa0578570-mRNA-1:exon:30263;Parent=Msa0578570-mRNA-1 |
| chr4_1 | exon | 83112780 | 83112836 | 83112780 | ID=Msa0578570-mRNA-1:exon:30264;Parent=Msa0578570-mRNA-1 |
| chr4_1 | exon | 83112933 | 83113340 | 83112933 | ID=Msa0578570-mRNA-1:exon:30265;Parent=Msa0578570-mRNA-1 |
| chr4_1 | five_prime_UTR | 83109378 | 83109528 | 83109378 | ID=Msa0578570-mRNA-1:five_prime_utr;Parent=Msa0578570-mRNA-1 |
| chr4_1 | CDS | 83109529 | 83109786 | 83109529 | ID=Msa0578570-mRNA-1:cds;Parent=Msa0578570-mRNA-1 |
| chr4_1 | CDS | 83110476 | 83110910 | 83110476 | ID=Msa0578570-mRNA-1:cds;Parent=Msa0578570-mRNA-1 |
| chr4_1 | CDS | 83111078 | 83111168 | 83111078 | ID=Msa0578570-mRNA-1:cds;Parent=Msa0578570-mRNA-1 |
| chr4_1 | CDS | 83111271 | 83111512 | 83111271 | ID=Msa0578570-mRNA-1:cds;Parent=Msa0578570-mRNA-1 |
| chr4_1 | CDS | 83111606 | 83111902 | 83111606 | ID=Msa0578570-mRNA-1:cds;Parent=Msa0578570-mRNA-1 |
| chr4_1 | CDS | 83112269 | 83112343 | 83112269 | ID=Msa0578570-mRNA-1:cds;Parent=Msa0578570-mRNA-1 |
| chr4_1 | CDS | 83112564 | 83112695 | 83112564 | ID=Msa0578570-mRNA-1:cds;Parent=Msa0578570-mRNA-1 |
| chr4_1 | CDS | 83112780 | 83112836 | 83112780 | ID=Msa0578570-mRNA-1:cds;Parent=Msa0578570-mRNA-1 |
| chr4_1 | CDS | 83112933 | 83113136 | 83112933 | ID=Msa0578570-mRNA-1:cds;Parent=Msa0578570-mRNA-1 |
| chr4_1 | three_prime_UTR | 83113137 | 83113340 | 83113137 | ID=Msa0578570-mRNA-1:three_prime_utr;Parent=Msa0578570-mRNA-1 |
| Gene Sequence |
| Protein sequence |
