Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658970 | XP_003630114.1 | 99.415 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658970 | sp|Q9C5J9|LIIP1_ARATH | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0646470 | Msa0658970 | 0.806123 | 9.584062e-50 | -8.615850e-47 |
| Msa0658970 | Msa0705010 | 0.968574 | 7.166247e-129 | -8.615850e-47 |
| Msa0658970 | Msa0705090 | 0.835220 | 1.904594e-56 | -8.615850e-47 |
| Msa0658970 | Msa1235460 | 0.819236 | 1.290949e-52 | -8.615850e-47 |
| Msa0202490 | Msa0658970 | 0.803789 | 2.947598e-49 | -8.615850e-47 |
| Msa0284180 | Msa0658970 | 0.802905 | 4.493672e-49 | -8.615850e-47 |
| Msa0336450 | Msa0658970 | 0.808526 | 2.965966e-50 | -8.615850e-47 |
| Msa0336540 | Msa0658970 | 0.828913 | 6.901905e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658970 | MtrunA17_Chr8g0383221 | 99.415 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 0.0 | 694 |
| Msa0658970 | MtrunA17_Chr7g0265001 | 28.369 | 141 | 76 | 3 | 23 | 162 | 18 | 134 | 2.10e-12 | 65.9 |
| Msa0658970 | MtrunA17_Chr1g0180291 | 29.078 | 141 | 74 | 4 | 23 | 162 | 16 | 131 | 7.28e-12 | 63.9 |
| Msa0658970 | MtrunA17_Chr8g0335471 | 25.749 | 167 | 93 | 4 | 23 | 189 | 10 | 145 | 1.05e-11 | 63.5 |
| Msa0658970 | MtrunA17_Chr8g0384311 | 31.902 | 163 | 81 | 7 | 23 | 183 | 15 | 149 | 1.25e-11 | 63.2 |
| Msa0658970 | MtrunA17_Chr7g0250531 | 25.150 | 167 | 94 | 4 | 23 | 189 | 10 | 145 | 6.72e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0658970 | AT5G64813.1 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| Msa0658970 | AT5G64813.3 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| Msa0658970 | AT5G64813.2 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| Msa0658970 | AT5G09910.1 | 70.349 | 344 | 86 | 5 | 2 | 342 | 3 | 333 | 4.03e-163 | 459 |
| Msa0658970 | AT5G09910.4 | 70.349 | 344 | 86 | 5 | 2 | 342 | 3 | 333 | 4.03e-163 | 459 |
| Msa0658970 | AT5G09910.2 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.28e-145 | 413 |
| Msa0658970 | AT5G09910.3 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.28e-145 | 413 |
| Msa0658970 | AT5G09910.5 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.28e-145 | 413 |
| Msa0658970 | AT1G43890.3 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.44e-13 | 68.6 |
| Msa0658970 | AT1G43890.1 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.44e-13 | 68.6 |
| Msa0658970 | AT1G43890.2 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.44e-13 | 68.6 |
| Msa0658970 | AT5G03530.2 | 29.605 | 152 | 78 | 5 | 23 | 173 | 15 | 138 | 3.64e-11 | 62.4 |
| Msa0658970 | AT5G03530.1 | 29.605 | 152 | 78 | 5 | 23 | 173 | 15 | 138 | 3.64e-11 | 62.4 |
Find 115 sgRNAs with CRISPR-Local
Find 323 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGAAGATCTTTGTATTT+TGG | 0.152023 | 4_3:-69207068 | Msa0658970:exon |
| TTAGTTCACCTTATCGTTAA+AGG | 0.183622 | 4_3:-69209888 | Msa0658970:CDS |
| CCTGTTCCATATATTGTTAT+TGG | 0.188210 | 4_3:-69209364 | Msa0658970:CDS |
| CATTTCCAGCACACTACTTA+TGG | 0.225792 | 4_3:-69209732 | Msa0658970:intron |
| AGAAGAAAGTGAACAATTTA+CGG | 0.249416 | 4_3:+69212354 | None:intergenic |
| TTGTTACCAATAACAATATA+TGG | 0.272612 | 4_3:+69209358 | None:intergenic |
| CACACTACTTATGGAAATTC+TGG | 0.286680 | 4_3:-69209723 | Msa0658970:CDS |
| GTTAAGAATTTAGTTAGTTC+TGG | 0.300390 | 4_3:-69212050 | Msa0658970:five_prime_UTR |
| GTGCTACATGTTCAAAGTTT+GGG | 0.304639 | 4_3:-69206912 | Msa0658970:three_prime_UTR |
| GGTGCTACATGTTCAAAGTT+TGG | 0.322891 | 4_3:-69206913 | Msa0658970:three_prime_UTR |
| GGAACGTGAGAGGGAGAATA+AGG | 0.330995 | 4_3:-69212002 | Msa0658970:CDS |
| TTAGTTAGTTCTGGAGGGTT+TGG | 0.337796 | 4_3:-69212041 | Msa0658970:five_prime_UTR |
| GGGAGAATTTAAATGATATA+TGG | 0.338096 | 4_3:-69206891 | Msa0658970:three_prime_UTR |
| GTTGAACTGTGGGATGTATC+AGG | 0.360390 | 4_3:-69209654 | Msa0658970:CDS |
| CCTTTGGGATCTGGCGGCCC+TGG | 0.368152 | 4_3:-69209394 | Msa0658970:CDS |
| TTGAGGCGCTTACTGCAATA+AGG | 0.372575 | 4_3:+69209194 | None:intergenic |
| AAAGTGAACAATTTACGGTT+TGG | 0.375292 | 4_3:+69212359 | None:intergenic |
| GCAGCTGAGATTGCTGCAAC+TGG | 0.375965 | 4_3:-69209430 | Msa0658970:CDS |
| TTCTCATTCTTGCAGGTGTT+GGG | 0.377533 | 4_3:-69209920 | Msa0658970:intron |
| GAACCAGACAAAGAAAATCT+AGG | 0.383439 | 4_3:+69207137 | None:intergenic |
| ACGCCAATGGGTCGAGAAGC+AGG | 0.392805 | 4_3:-69209275 | Msa0658970:CDS |
| TCAGTTGAAGGAGATTGATT+TGG | 0.394157 | 4_3:+69212304 | None:intergenic |
| CTTGATTAGTGTATGATTAG+TGG | 0.394949 | 4_3:-69212122 | Msa0658970:five_prime_UTR |
| GATGATCAGTCTTATAATAC+AGG | 0.395791 | 4_3:-69207357 | Msa0658970:CDS |
| AGGGTTTGGAAACCATGTTC+TGG | 0.396334 | 4_3:-69212027 | Msa0658970:exon |
| CTACTGTACAACCAATTGTC+TGG | 0.410194 | 4_3:+69209844 | None:intergenic |
| GCTCGTCCTTCCCAGACAAT+TGG | 0.412167 | 4_3:-69209855 | Msa0658970:CDS |
| CACTGATATGTATTCTTACA+TGG | 0.413105 | 4_3:-69207026 | Msa0658970:three_prime_UTR |
| ACAATTTACGGTTTGGATCA+AGG | 0.426177 | 4_3:+69212366 | None:intergenic |
| TAGCTTTCAGAGACCGAAAC+TGG | 0.435235 | 4_3:+69207167 | None:intergenic |
| CGATGGATCTGAAGAGGATC+TGG | 0.440563 | 4_3:+69212275 | None:intergenic |
| CTCTCTCAGAATCACCTTTG+AGG | 0.453797 | 4_3:+69209685 | None:intergenic |
| CAGAGAAGATGCGTTACTAT+CGG | 0.456766 | 4_3:-69212210 | Msa0658970:five_prime_UTR |
| CCAATAACAATATATGGAAC+AGG | 0.458650 | 4_3:+69209364 | None:intergenic |
| ATCTGGCGTTGTTCAGTTGA+AGG | 0.458718 | 4_3:+69212292 | None:intergenic |
| AAAAGAAGCAAGGTATGATA+AGG | 0.458953 | 4_3:-69207620 | Msa0658970:CDS |
| ATTCGCTGAGAAGATCTTTG+AGG | 0.468161 | 4_3:+69207423 | None:intergenic |
| GTCTGGGAAGGACGAGCAAT+GGG | 0.472190 | 4_3:+69209861 | None:intergenic |
| AGAGAAGATGCGTTACTATC+GGG | 0.477438 | 4_3:-69212209 | Msa0658970:five_prime_UTR |
| AGCTGATATTGTTGCAAAAG+AGG | 0.478431 | 4_3:-69209335 | Msa0658970:CDS |
| CTATCCTCAACAACCAGTTT+CGG | 0.481026 | 4_3:-69207180 | Msa0658970:CDS |
| CGAAGACGAGTTTGCAGAAG+TGG | 0.483875 | 4_3:-69209453 | Msa0658970:CDS |
| AGATTGCGTTGAGCCGGAAG+TGG | 0.491900 | 4_3:+69207221 | None:intergenic |
| GTGCTCGTTGTTGGTGACTC+AGG | 0.492664 | 4_3:-69211944 | Msa0658970:intron |
| CTCACGTTCCCTCCAGAACA+TGG | 0.493187 | 4_3:+69212015 | None:intergenic |
| GGAGTTAGATTGCGTTGAGC+CGG | 0.493866 | 4_3:+69207215 | None:intergenic |
| AACCCTGCTTCTCGACCCAT+TGG | 0.497798 | 4_3:+69209272 | None:intergenic |
| TTGTTGATGTTGCACGCCAA+TGG | 0.504775 | 4_3:-69209288 | Msa0658970:CDS |
| CATAACGGTGGAGTGCTTTG+TGG | 0.506067 | 4_3:-69211977 | Msa0658970:CDS |
| TGGTGGTTGAATCTATTTGA+CGG | 0.509052 | 4_3:-69212147 | Msa0658970:five_prime_UTR |
| AGTCAGTGGAAGCTCCTCGC+TGG | 0.509155 | 4_3:+69209240 | None:intergenic |
| ATGAAATACCTGCACCTACA+TGG | 0.516650 | 4_3:-69207458 | Msa0658970:CDS |
| TGGGAGAACCTTTAACGATA+AGG | 0.517212 | 4_3:+69209880 | None:intergenic |
| AACGATAAGGTGAACTAAAG+AGG | 0.519763 | 4_3:+69209893 | None:intergenic |
| TTGGGATCTGGCGGCCCTGG+TGG | 0.522309 | 4_3:-69209391 | Msa0658970:CDS |
| TGTTGATGTTGCACGCCAAT+GGG | 0.527951 | 4_3:-69209287 | Msa0658970:CDS |
| AAGAATTTAGTTAGTTCTGG+AGG | 0.530347 | 4_3:-69212047 | Msa0658970:five_prime_UTR |
| TGAGGATAGAGTGTGGGTGG+TGG | 0.530789 | 4_3:+69207194 | None:intergenic |
| GAGATTTCTTTGTTGAACTG+TGG | 0.535232 | 4_3:-69209665 | Msa0658970:CDS |
| TGAGAAGATCTTTGAGGTGA+AGG | 0.537945 | 4_3:+69207429 | None:intergenic |
| AGATCTTTGAGGTGAAGGAA+TGG | 0.539829 | 4_3:+69207434 | None:intergenic |
| TACTGTACAACCAATTGTCT+GGG | 0.540418 | 4_3:+69209845 | None:intergenic |
| AGTGGAAGCTCCTCGCTGGA+TGG | 0.542183 | 4_3:+69209244 | None:intergenic |
| AGGCTTTCTCAGTGCGGAGA+AGG | 0.542272 | 4_3:-69206934 | Msa0658970:three_prime_UTR |
| CAAGTCAGAGTGCTCGTTGT+TGG | 0.544697 | 4_3:-69211953 | Msa0658970:CDS |
| AAATGAATGAATCAGTGGAC+AGG | 0.544902 | 4_3:+69206962 | None:intergenic |
| AACCAGACAAAGAAAATCTA+GGG | 0.551575 | 4_3:+69207138 | None:intergenic |
| GGAAGCATGTTATACTTGTA+CGG | 0.551656 | 4_3:+69207245 | None:intergenic |
| AGATTTCTTTGTTGAACTGT+GGG | 0.551856 | 4_3:-69209664 | Msa0658970:CDS |
| GGAATGGACCATGTAGGTGC+AGG | 0.556023 | 4_3:+69207450 | None:intergenic |
| CAGCTGAGATTGCTGCAACT+GGG | 0.556342 | 4_3:-69209429 | Msa0658970:CDS |
| TTTGGATGTATGAAGTATGA+AGG | 0.556714 | 4_3:+69212322 | None:intergenic |
| TGTCTGGGAAGGACGAGCAA+TGG | 0.556939 | 4_3:+69209860 | None:intergenic |
| TGTTGAGGATAGAGTGTGGG+TGG | 0.563767 | 4_3:+69207191 | None:intergenic |
| TCAGTGAATAAAAGAGAGAT+CGG | 0.566338 | 4_3:+69209610 | None:intergenic |
| GATTGCGTTGAGCCGGAAGT+GGG | 0.566553 | 4_3:+69207222 | None:intergenic |
| GCTGATATTGTTGCAAAAGA+GGG | 0.567194 | 4_3:-69209334 | Msa0658970:CDS |
| GCAATAAGGCCTCCACCACC+AGG | 0.569478 | 4_3:+69209208 | None:intergenic |
| AGCTCTTCAAGTAGCCTCAA+AGG | 0.575296 | 4_3:-69209699 | Msa0658970:CDS |
| AGAATTTAGTTAGTTCTGGA+GGG | 0.578978 | 4_3:-69212046 | Msa0658970:five_prime_UTR |
| TGCTACATGTTCAAAGTTTG+GGG | 0.583833 | 4_3:-69206911 | Msa0658970:three_prime_UTR |
| CGCCAATGGGTCGAGAAGCA+GGG | 0.583957 | 4_3:-69209274 | Msa0658970:CDS |
| GAGGGTGCGAGAGGAAGCAG+CGG | 0.585539 | 4_3:-69209316 | Msa0658970:CDS |
| AGAAGCAAGGTATGATAAGG+AGG | 0.588578 | 4_3:-69207617 | Msa0658970:CDS |
| CTTTAGCGATGGATCTGAAG+AGG | 0.589947 | 4_3:+69212269 | None:intergenic |
| TTGCGTTGAGCCGGAAGTGG+GGG | 0.590536 | 4_3:+69207224 | None:intergenic |
| TATGGAACAGGAAGACCACC+AGG | 0.593874 | 4_3:+69209376 | None:intergenic |
| TGTTCTGGAGGGAACGTGAG+AGG | 0.595631 | 4_3:-69212012 | Msa0658970:CDS |
| ATCAGTGGACAGGTTACAAG+TGG | 0.603295 | 4_3:+69206972 | None:intergenic |
| GTTTGGAAACCATGTTCTGG+AGG | 0.608805 | 4_3:-69212024 | Msa0658970:exon |
| CCAGGGCCGCCAGATCCCAA+AGG | 0.609580 | 4_3:+69209394 | None:intergenic |
| GAAATCAAGAGCTTTAGCGA+TGG | 0.613254 | 4_3:+69212258 | None:intergenic |
| GTACAACCAATTGTCTGGGA+AGG | 0.616763 | 4_3:+69209849 | None:intergenic |
| CCAGGAAAACTCTCAGTCAG+TGG | 0.617823 | 4_3:+69209226 | None:intergenic |
| TGGTTGTACAGTAGATGTGA+AGG | 0.618127 | 4_3:-69209835 | Msa0658970:intron |
| GTTCTGGAGGGAACGTGAGA+GGG | 0.619113 | 4_3:-69212011 | Msa0658970:CDS |
| TACAGGCAGCAAAAGAAGCA+AGG | 0.630672 | 4_3:-69207630 | Msa0658970:intron |
| GAGACCGAAACTGGTTGTTG+AGG | 0.633597 | 4_3:+69207176 | None:intergenic |
| TTTGGAAACCATGTTCTGGA+GGG | 0.634282 | 4_3:-69212023 | Msa0658970:exon |
| GGTTGTTGAGGATAGAGTGT+GGG | 0.640336 | 4_3:+69207188 | None:intergenic |
| AGGGAGAATAAGGAACATAA+CGG | 0.642381 | 4_3:-69211992 | Msa0658970:CDS |
| GTTGCAAAAGAGGGTGCGAG+AGG | 0.651488 | 4_3:-69209325 | Msa0658970:CDS |
| ATTGCGTTGAGCCGGAAGTG+GGG | 0.655325 | 4_3:+69207223 | None:intergenic |
| AGGGTGCGAGAGGAAGCAGC+GGG | 0.661507 | 4_3:-69209315 | Msa0658970:CDS |
| TCAGCTCCTTTGGGATCTGG+CGG | 0.672711 | 4_3:-69209400 | Msa0658970:CDS |
| ATGATCAGTCTTATAATACA+GGG | 0.679216 | 4_3:-69207356 | Msa0658970:intron |
| GAAGACGAGTTTGCAGAAGT+GGG | 0.680237 | 4_3:-69209452 | Msa0658970:CDS |
| GAGAATAAGGAACATAACGG+TGG | 0.686740 | 4_3:-69211989 | Msa0658970:CDS |
| CACGTGCTATTTGATCGCGT+GGG | 0.692971 | 4_3:-69212432 | None:intergenic |
| TGGTTGTTGAGGATAGAGTG+TGG | 0.696987 | 4_3:+69207187 | None:intergenic |
| GGGTTTGCTTCCATCCAGCG+AGG | 0.699492 | 4_3:-69209254 | Msa0658970:CDS |
| GGTGAAGGAATGGACCATGT+AGG | 0.709587 | 4_3:+69207444 | None:intergenic |
| ATTTACGGTTTGGATCAAGG+TGG | 0.725079 | 4_3:+69212369 | None:intergenic |
| TAGATGAAATATCTTCTCAG+CGG | 0.726315 | 4_3:-69207401 | Msa0658970:CDS |
| ATGGAACAGGAAGACCACCA+GGG | 0.755247 | 4_3:+69209377 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATTAAATTTTATCAC+AGG | + | chr4_3:69208354-69208373 | None:intergenic | 10.0% |
| !!! | AATATTATTTGATTTTGAAT+TGG | - | chr4_3:69208366-69208385 | Msa0658970:intron | 10.0% |
| !!! | CTATTTTTATAAATTAACTT+TGG | - | chr4_3:69208506-69208525 | Msa0658970:intron | 10.0% |
| !!! | ATTTTTATAAATTAACTTTG+GGG | - | chr4_3:69208508-69208527 | Msa0658970:intron | 10.0% |
| !! | GGTATTTATTATATAATTAA+TGG | + | chr4_3:69208919-69208938 | None:intergenic | 10.0% |
| !! | AAAAAAATCTAAATAGAAAT+AGG | - | chr4_3:69210606-69210625 | Msa0658970:intron | 10.0% |
| !!! | AATTTATTTTCAAAATCAAA+AGG | - | chr4_3:69211261-69211280 | Msa0658970:intron | 10.0% |
| !! | TAAATAAATAAATAAATACG+AGG | + | chr4_3:69211553-69211572 | None:intergenic | 10.0% |
| !! | ATATAATCCATTTATAAAGT+AGG | - | chr4_3:69208577-69208596 | Msa0658970:intron | 15.0% |
| !!! | TTTTATAAAACTGAAACAAT+AGG | + | chr4_3:69209709-69209728 | None:intergenic | 15.0% |
| !! | ATAAAATTCTATAGAGAATA+TGG | - | chr4_3:69210686-69210705 | Msa0658970:intron | 15.0% |
| !!! | TCTAATCTAGTTTTTTTTAA+GGG | + | chr4_3:69211221-69211240 | None:intergenic | 15.0% |
| !!! | TTCTAATCTAGTTTTTTTTA+AGG | + | chr4_3:69211222-69211241 | None:intergenic | 15.0% |
| !!! | TAGAAGTTGATTTTTTTTAT+CGG | - | chr4_3:69211237-69211256 | Msa0658970:intron | 15.0% |
| !!! | AGTAGTTTTAATTTTTTTGT+CGG | - | chr4_3:69211614-69211633 | Msa0658970:intron | 15.0% |
| !!! | TGGATTTTGTTTTGAAAAAT+TGG | - | chr4_3:69207105-69207124 | Msa0658970:CDS | 20.0% |
| !!! | ATTTTGTTTTGAAAAATTGG+TGG | - | chr4_3:69207108-69207127 | Msa0658970:CDS | 20.0% |
| !! | ACTGTTATAATATTTGATTG+AGG | - | chr4_3:69207997-69208016 | Msa0658970:intron | 20.0% |
| !! | TTCAATCAATCAAATATTAC+AGG | - | chr4_3:69208228-69208247 | Msa0658970:intron | 20.0% |
| !! | TATCAAAATCTAATGTTACT+AGG | - | chr4_3:69208536-69208555 | Msa0658970:intron | 20.0% |
| !! | ATCAAAATCTAATGTTACTA+GGG | - | chr4_3:69208537-69208556 | Msa0658970:intron | 20.0% |
| !! | AGCAAATTAAGAAATAGAAA+CGG | + | chr4_3:69208779-69208798 | None:intergenic | 20.0% |
| !! | AGCAAATTAAGAAATAGAAA+CGG | + | chr4_3:69208779-69208798 | None:intergenic | 20.0% |
| !! | TTGTTACCAATAACAATATA+TGG | + | chr4_3:69209917-69209936 | None:intergenic | 20.0% |
| !! | TTAGAAATTAGCATTAACAT+CGG | + | chr4_3:69210184-69210203 | None:intergenic | 20.0% |
| !!! | CTATTTCATCTGATATTTTA+TGG | + | chr4_3:69210485-69210504 | None:intergenic | 20.0% |
| !!! | ACAAATTGGTAGTATTAATA+AGG | - | chr4_3:69210915-69210934 | Msa0658970:intron | 20.0% |
| !!! | CAAATTGGTAGTATTAATAA+GGG | - | chr4_3:69210916-69210935 | Msa0658970:intron | 20.0% |
| !!! | AAATTGGTAGTATTAATAAG+GGG | - | chr4_3:69210917-69210936 | Msa0658970:intron | 20.0% |
| !! | TATTAATAAGGGGAAATATT+TGG | - | chr4_3:69210927-69210946 | Msa0658970:intron | 20.0% |
| !! | AACTTAAGATGTTATACTAT+CGG | - | chr4_3:69211429-69211448 | Msa0658970:intron | 20.0% |
| !! | TAAAACTACTATAAGAAGAA+TGG | + | chr4_3:69211604-69211623 | None:intergenic | 20.0% |
| !!! | CAACAACAATAAATTTTGTA+AGG | + | chr4_3:69211987-69212006 | None:intergenic | 20.0% |
| ! | AGAAGAAAGTGAACAATTTA+CGG | + | chr4_3:69206921-69206940 | None:intergenic | 25.0% |
| ! | GTTAAGAATTTAGTTAGTTC+TGG | - | chr4_3:69207222-69207241 | Msa0658970:CDS | 25.0% |
| !!! | GATTTTGATAGAATTGATTC+CGG | - | chr4_3:69207426-69207445 | Msa0658970:CDS | 25.0% |
| !! | GTTTAAGTTAGAATTAACTC+TGG | - | chr4_3:69207495-69207514 | Msa0658970:intron | 25.0% |
| !!! | GTTTCTAAGGTACATAAATA+AGG | + | chr4_3:69207776-69207795 | None:intergenic | 25.0% |
| !!! | ACTTTACTGTGATTTTTTAG+CGG | - | chr4_3:69207826-69207845 | Msa0658970:intron | 25.0% |
| !! | TTTGGAATTTAGAAATCCAT+TGG | - | chr4_3:69207911-69207930 | Msa0658970:intron | 25.0% |
| ! | TTGGAATTTAGAAATCCATT+GGG | - | chr4_3:69207912-69207931 | Msa0658970:intron | 25.0% |
| ! | CTAAAATTAGCCGTAATATA+TGG | - | chr4_3:69208040-69208059 | Msa0658970:intron | 25.0% |
| ! | TTGACAAATGTCAATTTCTT+TGG | - | chr4_3:69208156-69208175 | Msa0658970:intron | 25.0% |
| ! | ATCAAATATTACAGGAAAGT+AGG | - | chr4_3:69208236-69208255 | Msa0658970:intron | 25.0% |
| ! | AAGTAGGTTAACTTTGTATA+TGG | - | chr4_3:69208252-69208271 | Msa0658970:intron | 25.0% |
| ! | AGTAGGTTAACTTTGTATAT+GGG | - | chr4_3:69208253-69208272 | Msa0658970:intron | 25.0% |
| !! | TTTTGAATTGGTTAAAGTTC+AGG | - | chr4_3:69208378-69208397 | Msa0658970:intron | 25.0% |
| ! | ACTTAAGCCTACTTTATAAA+TGG | + | chr4_3:69208587-69208606 | None:intergenic | 25.0% |
| ! | ATTTGAAAAACTCTCAGATA+TGG | - | chr4_3:69208636-69208655 | Msa0658970:intron | 25.0% |
| !!! | ATTTTTTTATGACGTGAATC+AGG | + | chr4_3:69208886-69208905 | None:intergenic | 25.0% |
| !! | TTATTTTCTTCGCTAATGTT+TGG | + | chr4_3:69209232-69209251 | None:intergenic | 25.0% |
| ! | ATAGAGAGAATCATAAAGTA+GGG | + | chr4_3:69209290-69209309 | None:intergenic | 25.0% |
| ! | AATAGAGAGAATCATAAAGT+AGG | + | chr4_3:69209291-69209310 | None:intergenic | 25.0% |
| !! | ATTAAGATGTCTCTGAAAAA+TGG | + | chr4_3:69209315-69209334 | None:intergenic | 25.0% |
| !!! | CTCTTTTATTCACTGATTAA+TGG | - | chr4_3:69209669-69209688 | Msa0658970:CDS | 25.0% |
| ! | GTATACATGTTTAGATTTGA+AGG | - | chr4_3:69209730-69209749 | Msa0658970:intron | 25.0% |
| ! | ATTAACATCGGAATTATTCA+TGG | + | chr4_3:69210172-69210191 | None:intergenic | 25.0% |
| ! | GATGTTAATGCTAATTTCTA+AGG | - | chr4_3:69210183-69210202 | Msa0658970:intron | 25.0% |
| ! | TCAAGTATTAACAAGTATAG+TGG | - | chr4_3:69210210-69210229 | Msa0658970:intron | 25.0% |
| !!! | TGGAATAGCTTTGTTTTAAT+GGG | + | chr4_3:69210397-69210416 | None:intergenic | 25.0% |
| !!! | ATGGAATAGCTTTGTTTTAA+TGG | + | chr4_3:69210398-69210417 | None:intergenic | 25.0% |
| !!! | TGAAATAGAGCTATTTTAGA+AGG | - | chr4_3:69210497-69210516 | Msa0658970:intron | 25.0% |
| !!! | GAAATAGAGCTATTTTAGAA+GGG | - | chr4_3:69210498-69210517 | Msa0658970:intron | 25.0% |
| ! | TTCTATAGAGAATATGGAAT+AGG | - | chr4_3:69210692-69210711 | Msa0658970:intron | 25.0% |
| ! | TATACATTCATTACACAACA+AGG | + | chr4_3:69210825-69210844 | None:intergenic | 25.0% |
| ! | TTAATACTACCAATTTGTCT+TGG | + | chr4_3:69210913-69210932 | None:intergenic | 25.0% |
| ! | AGAACAATACATGTATCTTA+AGG | - | chr4_3:69210954-69210973 | Msa0658970:intron | 25.0% |
| ! | GAACAATACATGTATCTTAA+GGG | - | chr4_3:69210955-69210974 | Msa0658970:intron | 25.0% |
| ! | AACAATACATGTATCTTAAG+GGG | - | chr4_3:69210956-69210975 | Msa0658970:intron | 25.0% |
| !!! | ATCACAGGACTTTTAAAAAT+TGG | + | chr4_3:69211095-69211114 | None:intergenic | 25.0% |
| ! | TTTCAAAATCAAAAGGCTAA+TGG | - | chr4_3:69211268-69211287 | Msa0658970:intron | 25.0% |
| ! | AATTCATTATCCATAATGAG+TGG | + | chr4_3:69211354-69211373 | None:intergenic | 25.0% |
| !! | ATGATCAGTCTTATAATACA+GGG | - | chr4_3:69211916-69211935 | Msa0658970:intron | 25.0% |
| !! | GTTTGAAGATCTTTGTATTT+TGG | - | chr4_3:69212204-69212223 | Msa0658970:five_prime_UTR | 25.0% |
| ! | CTAAAAAATGAATGAATCAG+TGG | + | chr4_3:69212318-69212337 | None:intergenic | 25.0% |
| !!! | CTGATTCATTCATTTTTTAG+AGG | - | chr4_3:69212318-69212337 | Msa0658970:five_prime_UTR | 25.0% |
| ! | GGGAGAATTTAAATGATATA+TGG | - | chr4_3:69212381-69212400 | Msa0658970:five_prime_UTR | 25.0% |
| AAAGTGAACAATTTACGGTT+TGG | + | chr4_3:69206916-69206935 | None:intergenic | 30.0% | |
| TTTGGATGTATGAAGTATGA+AGG | + | chr4_3:69206953-69206972 | None:intergenic | 30.0% | |
| CTTGATTAGTGTATGATTAG+TGG | - | chr4_3:69207150-69207169 | Msa0658970:CDS | 30.0% | |
| !! | AAGCTTTTGAGTCTTTGTTT+AGG | - | chr4_3:69207180-69207199 | Msa0658970:CDS | 30.0% |
| !! | AGCTTTTGAGTCTTTGTTTA+GGG | - | chr4_3:69207181-69207200 | Msa0658970:CDS | 30.0% |
| !! | AAGAATTTAGTTAGTTCTGG+AGG | - | chr4_3:69207225-69207244 | Msa0658970:CDS | 30.0% |
| !! | AGAATTTAGTTAGTTCTGGA+GGG | - | chr4_3:69207226-69207245 | Msa0658970:CDS | 30.0% |
| !! | TTCTTCAACTTACTTTTAGC+CGG | + | chr4_3:69207448-69207467 | None:intergenic | 30.0% |
| TAAGTTAGAATTAACTCTGG+AGG | - | chr4_3:69207498-69207517 | Msa0658970:intron | 30.0% | |
| !!! | TTTTTGAAGTGTGCAAGTTA+TGG | - | chr4_3:69207673-69207692 | Msa0658970:intron | 30.0% |
| TATGATGAATTTAACTCAGC+TGG | - | chr4_3:69207730-69207749 | Msa0658970:intron | 30.0% | |
| !!! | CTTTACTGTGATTTTTTAGC+GGG | - | chr4_3:69207827-69207846 | Msa0658970:intron | 30.0% |
| !!! | TTTACTGTGATTTTTTAGCG+GGG | - | chr4_3:69207828-69207847 | Msa0658970:intron | 30.0% |
| ATAAATGTACTCTACACACT+CGG | + | chr4_3:69208073-69208092 | None:intergenic | 30.0% | |
| AGTACAATCAATTAAGCCTA+AGG | + | chr4_3:69209051-69209070 | None:intergenic | 30.0% | |
| TAAACGATGAATAGTGTGTT+TGG | - | chr4_3:69209119-69209138 | Msa0658970:intron | 30.0% | |
| TAGAGAGAATCATAAAGTAG+GGG | + | chr4_3:69209289-69209308 | None:intergenic | 30.0% | |
| ! | TGATATTTTCTCATTCTTGC+AGG | - | chr4_3:69209345-69209364 | Msa0658970:CDS | 30.0% |
| TTAGTTCACCTTATCGTTAA+AGG | - | chr4_3:69209384-69209403 | Msa0658970:CDS | 30.0% | |
| AGGTAAGCATTTCACATTAT+AGG | - | chr4_3:69209457-69209476 | Msa0658970:CDS | 30.0% | |
| GGTAAGCATTTCACATTATA+GGG | - | chr4_3:69209458-69209477 | Msa0658970:CDS | 30.0% | |
| AGATTTCTTTGTTGAACTGT+GGG | - | chr4_3:69209608-69209627 | Msa0658970:CDS | 30.0% | |
| TCAGTGAATAAAAGAGAGAT+CGG | + | chr4_3:69209665-69209684 | None:intergenic | 30.0% | |
| ATGTTTAGATTTGAAGGAAG+TGG | - | chr4_3:69209736-69209755 | Msa0658970:intron | 30.0% | |
| ATTGTTTGAACTTCATTTGC+AGG | - | chr4_3:69209761-69209780 | Msa0658970:intron | 30.0% | |
| CCAATAACAATATATGGAAC+AGG | + | chr4_3:69209911-69209930 | None:intergenic | 30.0% | |
| CCTGTTCCATATATTGTTAT+TGG | - | chr4_3:69209908-69209927 | Msa0658970:CDS | 30.0% | |
| AGTGACACAAAATTTAGTTG+AGG | + | chr4_3:69210098-69210117 | None:intergenic | 30.0% | |
| ! | ATCATCTAAAGCATAGAAAG+TGG | + | chr4_3:69210138-69210157 | None:intergenic | 30.0% |
| !! | TTTGTTCTGTACTTTAAAGC+TGG | - | chr4_3:69210254-69210273 | Msa0658970:intron | 30.0% |
| AGAGTCAGATTAGTAAAAAC+AGG | + | chr4_3:69210428-69210447 | None:intergenic | 30.0% | |
| ACAAATAGTTAAATGCCAAG+TGG | + | chr4_3:69210460-69210479 | None:intergenic | 30.0% | |
| GTAAAGCAGATCATTTCTAT+TGG | + | chr4_3:69210552-69210571 | None:intergenic | 30.0% | |
| CAAATGTGTCTATACTCAAA+GGG | + | chr4_3:69210874-69210893 | None:intergenic | 30.0% | |
| TCAAATGTGTCTATACTCAA+AGG | + | chr4_3:69210875-69210894 | None:intergenic | 30.0% | |
| ! | TCTTAAGGGGTCTTATAAAT+AGG | - | chr4_3:69210969-69210988 | Msa0658970:intron | 30.0% |
| ! | CTTAAGGGGTCTTATAAATA+GGG | - | chr4_3:69210970-69210989 | Msa0658970:intron | 30.0% |
| AAACATTGAAGAAACACAGA+TGG | + | chr4_3:69211124-69211143 | None:intergenic | 30.0% | |
| CTACTTCTAATCTAGATAGT+TGG | + | chr4_3:69211194-69211213 | None:intergenic | 30.0% | |
| TTCTTTATAGCCACTCATTA+TGG | - | chr4_3:69211341-69211360 | Msa0658970:intron | 30.0% | |
| ATAAGCACAACTGATACTTT+AGG | + | chr4_3:69211487-69211506 | None:intergenic | 30.0% | |
| AAAAGAAGCAAGGTATGATA+AGG | - | chr4_3:69211652-69211671 | Msa0658970:intron | 30.0% | |
| TCTTCTCCTAATCAACTAAA+AGG | + | chr4_3:69211784-69211803 | None:intergenic | 30.0% | |
| TAGATGAAATATCTTCTCAG+CGG | - | chr4_3:69211871-69211890 | Msa0658970:intron | 30.0% | |
| ! | GATGATCAGTCTTATAATAC+AGG | - | chr4_3:69211915-69211934 | Msa0658970:intron | 30.0% |
| AACCAGACAAAGAAAATCTA+GGG | + | chr4_3:69212137-69212156 | None:intergenic | 30.0% | |
| !!! | GATCTTTGTATTTTGGTAAC+TGG | - | chr4_3:69212211-69212230 | Msa0658970:five_prime_UTR | 30.0% |
| CACTGATATGTATTCTTACA+TGG | - | chr4_3:69212246-69212265 | Msa0658970:five_prime_UTR | 30.0% | |
| ! | ACAATTTACGGTTTGGATCA+AGG | + | chr4_3:69206909-69206928 | None:intergenic | 35.0% |
| TCAGTTGAAGGAGATTGATT+TGG | + | chr4_3:69206971-69206990 | None:intergenic | 35.0% | |
| !!! | GTTTTAATTCTCACGTGACA+TGG | - | chr4_3:69207085-69207104 | Msa0658970:CDS | 35.0% |
| TGGTGGTTGAATCTATTTGA+CGG | - | chr4_3:69207125-69207144 | Msa0658970:CDS | 35.0% | |
| AGGGAGAATAAGGAACATAA+CGG | - | chr4_3:69207280-69207299 | Msa0658970:intron | 35.0% | |
| TCAAGACTTGAGTGAATCAT+AGG | - | chr4_3:69207473-69207492 | Msa0658970:CDS | 35.0% | |
| TAAAGCACAAAGCTCTTCTA+AGG | + | chr4_3:69207806-69207825 | None:intergenic | 35.0% | |
| !! | AAGTCAAGTTGATTGAGTGA+AGG | - | chr4_3:69207880-69207899 | Msa0658970:intron | 35.0% |
| !! | CTGCTTTAGAACTTAGAAGT+AGG | - | chr4_3:69208098-69208117 | Msa0658970:intron | 35.0% |
| AGAACTTAGAAGTAGGAAGA+TGG | - | chr4_3:69208105-69208124 | Msa0658970:intron | 35.0% | |
| CTGTAATGCAAACGACTATA+TGG | - | chr4_3:69208309-69208328 | Msa0658970:intron | 35.0% | |
| TTCCTCTATGACAAATCTGT+GGG | + | chr4_3:69208611-69208630 | None:intergenic | 35.0% | |
| ATTCCTCTATGACAAATCTG+TGG | + | chr4_3:69208612-69208631 | None:intergenic | 35.0% | |
| AGTATTTCGTCAAATCAAGC+AGG | + | chr4_3:69208746-69208765 | None:intergenic | 35.0% | |
| TATGACGTGAATCAGGAAAA+GGG | + | chr4_3:69208879-69208898 | None:intergenic | 35.0% | |
| TTATGACGTGAATCAGGAAA+AGG | + | chr4_3:69208880-69208899 | None:intergenic | 35.0% | |
| ! | GAATAGTGTGTTTGGAATTG+CGG | - | chr4_3:69209127-69209146 | Msa0658970:intron | 35.0% |
| ! | TACTATTTGTAGCTTGTGGT+TGG | + | chr4_3:69209175-69209194 | None:intergenic | 35.0% |
| AAGCTACTATTTGTAGCTTG+TGG | + | chr4_3:69209179-69209198 | None:intergenic | 35.0% | |
| AGAGAGAATCATAAAGTAGG+GGG | + | chr4_3:69209288-69209307 | None:intergenic | 35.0% | |
| AACGATAAGGTGAACTAAAG+AGG | + | chr4_3:69209382-69209401 | None:intergenic | 35.0% | |
| TACTGTACAACCAATTGTCT+GGG | + | chr4_3:69209430-69209449 | None:intergenic | 35.0% | |
| AATTTCCATAAGTAGTGTGC+TGG | + | chr4_3:69209548-69209567 | None:intergenic | 35.0% | |
| CACACTACTTATGGAAATTC+TGG | - | chr4_3:69209549-69209568 | Msa0658970:intron | 35.0% | |
| GAGATTTCTTTGTTGAACTG+TGG | - | chr4_3:69209607-69209626 | Msa0658970:CDS | 35.0% | |
| AGCTGATATTGTTGCAAAAG+AGG | - | chr4_3:69209937-69209956 | Msa0658970:intron | 35.0% | |
| GCTGATATTGTTGCAAAAGA+GGG | - | chr4_3:69209938-69209957 | Msa0658970:intron | 35.0% | |
| AACATCGGAATTATTCATGG+AGG | + | chr4_3:69210169-69210188 | None:intergenic | 35.0% | |
| CCATTTCAGATACAGTGATA+GGG | + | chr4_3:69210329-69210348 | None:intergenic | 35.0% | |
| ACCATTTCAGATACAGTGAT+AGG | + | chr4_3:69210330-69210349 | None:intergenic | 35.0% | |
| GTACCTTAGAGTTTAGTTGA+TGG | - | chr4_3:69210348-69210367 | Msa0658970:intron | 35.0% | |
| CATCCATCAACTAAACTCTA+AGG | + | chr4_3:69210354-69210373 | None:intergenic | 35.0% | |
| !! | AGTTTAGTTGATGGATGAAG+AGG | - | chr4_3:69210357-69210376 | Msa0658970:intron | 35.0% |
| GTCAGATTAGTAAAAACAGG+AGG | + | chr4_3:69210425-69210444 | None:intergenic | 35.0% | |
| ! | CTTTTCAGTCCAAGACAAAT+TGG | - | chr4_3:69210901-69210920 | Msa0658970:intron | 35.0% |
| ACACTGTTTATTCGATCACA+TGG | + | chr4_3:69211071-69211090 | None:intergenic | 35.0% | |
| CTACTATAAGAAGAATGGAC+TGG | + | chr4_3:69211599-69211618 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGTCGGATGACTAC+AGG | - | chr4_3:69211625-69211644 | Msa0658970:intron | 35.0% |
| ! | TGTGATTAAGTTTTTCCGCA+TGG | - | chr4_3:69211679-69211698 | Msa0658970:intron | 35.0% |
| !! | ACCTCTCCTTTTAGTTGATT+AGG | - | chr4_3:69211775-69211794 | Msa0658970:intron | 35.0% |
| TCCTAATCAACTAAAAGGAG+AGG | + | chr4_3:69211779-69211798 | None:intergenic | 35.0% | |
| ! | GGAAGCATGTTATACTTGTA+CGG | + | chr4_3:69212030-69212049 | None:intergenic | 35.0% |
| ! | TACCCTAGATTTTCTTTGTC+TGG | - | chr4_3:69212132-69212151 | Msa0658970:five_prime_UTR | 35.0% |
| GAACCAGACAAAGAAAATCT+AGG | + | chr4_3:69212138-69212157 | None:intergenic | 35.0% | |
| AAATGAATGAATCAGTGGAC+AGG | + | chr4_3:69212313-69212332 | None:intergenic | 35.0% | |
| GTGCTACATGTTCAAAGTTT+GGG | - | chr4_3:69212360-69212379 | Msa0658970:five_prime_UTR | 35.0% | |
| TGCTACATGTTCAAAGTTTG+GGG | - | chr4_3:69212361-69212380 | Msa0658970:five_prime_UTR | 35.0% | |
| ! | ATTTACGGTTTGGATCAAGG+TGG | + | chr4_3:69206906-69206925 | None:intergenic | 40.0% |
| ! | GAAATCAAGAGCTTTAGCGA+TGG | + | chr4_3:69207017-69207036 | None:intergenic | 40.0% |
| CAGAGAAGATGCGTTACTAT+CGG | - | chr4_3:69207062-69207081 | Msa0658970:three_prime_UTR | 40.0% | |
| AGAGAAGATGCGTTACTATC+GGG | - | chr4_3:69207063-69207082 | Msa0658970:three_prime_UTR | 40.0% | |
| !! | TTAGTTAGTTCTGGAGGGTT+TGG | - | chr4_3:69207231-69207250 | Msa0658970:CDS | 40.0% |
| ! | TTTGGAAACCATGTTCTGGA+GGG | - | chr4_3:69207249-69207268 | Msa0658970:CDS | 40.0% |
| GAGAATAAGGAACATAACGG+TGG | - | chr4_3:69207283-69207302 | Msa0658970:intron | 40.0% | |
| ! | AATTTTGTCTCCTGCAGTAG+TGG | - | chr4_3:69207571-69207590 | Msa0658970:intron | 40.0% |
| GATGAATTTAACTCAGCTGG+TGG | - | chr4_3:69207733-69207752 | Msa0658970:intron | 40.0% | |
| ! | CTAAGGTAAGCTGGTTTCTA+AGG | + | chr4_3:69207789-69207808 | None:intergenic | 40.0% |
| !! | AAAGCTCTTCTAAGGTAAGC+TGG | + | chr4_3:69207798-69207817 | None:intergenic | 40.0% |
| !! | TCAAGTTGATTGAGTGAAGG+AGG | - | chr4_3:69207883-69207902 | Msa0658970:intron | 40.0% |
| GCACTAGTACAAAATCCCAA+TGG | + | chr4_3:69207930-69207949 | None:intergenic | 40.0% | |
| CGGCATGACACCATATATTA+CGG | + | chr4_3:69208053-69208072 | None:intergenic | 40.0% | |
| ACTTAGAAGTAGGAAGATGG+TGG | - | chr4_3:69208108-69208127 | Msa0658970:intron | 40.0% | |
| GTATATGGGTGTTTGACTCT+AGG | - | chr4_3:69208267-69208286 | Msa0658970:intron | 40.0% | |
| TTCCCACAGATTTGTCATAG+AGG | - | chr4_3:69208606-69208625 | Msa0658970:intron | 40.0% | |
| ! | CCATCTGACTTTCTGTTTTC+CGG | + | chr4_3:69208940-69208959 | None:intergenic | 40.0% |
| CCTAAGGATAGACAACTTGA+GGG | + | chr4_3:69209035-69209054 | None:intergenic | 40.0% | |
| ! | AAGGGCATAAGTTTGGACTT+GGG | + | chr4_3:69209075-69209094 | None:intergenic | 40.0% |
| GAGAGAATCATAAAGTAGGG+GGG | + | chr4_3:69209287-69209306 | None:intergenic | 40.0% | |
| TTTCTCATTCTTGCAGGTGT+TGG | - | chr4_3:69209351-69209370 | Msa0658970:CDS | 40.0% | |
| TTCTCATTCTTGCAGGTGTT+GGG | - | chr4_3:69209352-69209371 | Msa0658970:CDS | 40.0% | |
| TGGGAGAACCTTTAACGATA+AGG | + | chr4_3:69209395-69209414 | None:intergenic | 40.0% | |
| CTACTGTACAACCAATTGTC+TGG | + | chr4_3:69209431-69209450 | None:intergenic | 40.0% | |
| TGGTTGTACAGTAGATGTGA+AGG | - | chr4_3:69209437-69209456 | Msa0658970:CDS | 40.0% | |
| GTAGTGTGCTGGAAATGAAA+CGG | + | chr4_3:69209537-69209556 | None:intergenic | 40.0% | |
| CATTTCCAGCACACTACTTA+TGG | - | chr4_3:69209540-69209559 | Msa0658970:intron | 40.0% | |
| !! | TTCTGTACTTTAAAGCTGGC+TGG | - | chr4_3:69210258-69210277 | Msa0658970:intron | 40.0% |
| CCCTATCACTGTATCTGAAA+TGG | - | chr4_3:69210326-69210345 | Msa0658970:intron | 40.0% | |
| AGTAAAAACAGGAGGCAACA+TGG | + | chr4_3:69210417-69210436 | None:intergenic | 40.0% | |
| GACTCTCTACTATATCCACT+TGG | - | chr4_3:69210442-69210461 | Msa0658970:intron | 40.0% | |
| ATGGAATAGGTTACTCTGTC+AGG | - | chr4_3:69210705-69210724 | Msa0658970:intron | 40.0% | |
| !! | CATATGAGAGAAGTGCCTAA+GGG | + | chr4_3:69210745-69210764 | None:intergenic | 40.0% |
| !! | ACATATGAGAGAAGTGCCTA+AGG | + | chr4_3:69210746-69210765 | None:intergenic | 40.0% |
| ! | AGGGGTCTTATAAATAGGGA+CGG | - | chr4_3:69210974-69210993 | Msa0658970:intron | 40.0% |
| CACAGATGGTTGAAAATCAC+AGG | + | chr4_3:69211110-69211129 | None:intergenic | 40.0% | |
| AGAAGCAAGGTATGATAAGG+AGG | - | chr4_3:69211655-69211674 | Msa0658970:intron | 40.0% | |
| CAAAGACATTACTGACCATG+CGG | + | chr4_3:69211697-69211716 | None:intergenic | 40.0% | |
| ATGAAATACCTGCACCTACA+TGG | - | chr4_3:69211814-69211833 | Msa0658970:intron | 40.0% | |
| CTATCCTCAACAACCAGTTT+CGG | - | chr4_3:69212092-69212111 | Msa0658970:five_prime_UTR | 40.0% | |
| !! | TTTTAGAGGCTTTCTCAGTG+CGG | - | chr4_3:69212332-69212351 | Msa0658970:five_prime_UTR | 40.0% |
| ! | GGTGCTACATGTTCAAAGTT+TGG | - | chr4_3:69212359-69212378 | Msa0658970:five_prime_UTR | 40.0% |
| ATCTGGCGTTGTTCAGTTGA+AGG | + | chr4_3:69206983-69207002 | None:intergenic | 45.0% | |
| CTTTAGCGATGGATCTGAAG+AGG | + | chr4_3:69207006-69207025 | None:intergenic | 45.0% | |
| AGGGTTTGGAAACCATGTTC+TGG | - | chr4_3:69207245-69207264 | Msa0658970:CDS | 45.0% | |
| GTTTGGAAACCATGTTCTGG+AGG | - | chr4_3:69207248-69207267 | Msa0658970:CDS | 45.0% | |
| ACCAAACACACTCGTTGAGA+GGG | + | chr4_3:69207388-69207407 | None:intergenic | 45.0% | |
| AACCAAACACACTCGTTGAG+AGG | + | chr4_3:69207389-69207408 | None:intergenic | 45.0% | |
| ATGCTTAGTTCCACTACTGC+AGG | + | chr4_3:69207584-69207603 | None:intergenic | 45.0% | |
| !!! | CTGTGATTTTTTAGCGGGGA+TGG | - | chr4_3:69207832-69207851 | Msa0658970:intron | 45.0% |
| !! | TTGACTTTTTCCACACGACG+CGG | + | chr4_3:69207867-69207886 | None:intergenic | 45.0% |
| GTTGATTGAGTGAAGGAGGT+TGG | - | chr4_3:69207887-69207906 | Msa0658970:intron | 45.0% | |
| TGAGTGAAGGAGGTTGGATT+TGG | - | chr4_3:69207893-69207912 | Msa0658970:intron | 45.0% | |
| TGCCACTGAAACTCGTAGAT+CGG | - | chr4_3:69207947-69207966 | Msa0658970:intron | 45.0% | |
| CGTACTTTCGAGATCTATGC+TGG | - | chr4_3:69208180-69208199 | Msa0658970:intron | 45.0% | |
| CACACACAGCTATAAAAGCG+AGG | + | chr4_3:69208468-69208487 | None:intergenic | 45.0% | |
| CCGGAAAACAGAAAGTCAGA+TGG | - | chr4_3:69208937-69208956 | Msa0658970:intron | 45.0% | |
| TAGACAACTTGAGGGCAGTT+TGG | + | chr4_3:69209027-69209046 | None:intergenic | 45.0% | |
| ! | CCCTCAAGTTGTCTATCCTT+AGG | - | chr4_3:69209032-69209051 | Msa0658970:intron | 45.0% |
| GCCTAAGGATAGACAACTTG+AGG | + | chr4_3:69209036-69209055 | None:intergenic | 45.0% | |
| ! | GAAGGGCATAAGTTTGGACT+TGG | + | chr4_3:69209076-69209095 | None:intergenic | 45.0% |
| ! | CACATCGAAGGGCATAAGTT+TGG | + | chr4_3:69209082-69209101 | None:intergenic | 45.0% |
| GTTGACTGATGCACATCGAA+GGG | + | chr4_3:69209093-69209112 | None:intergenic | 45.0% | |
| AGTTGACTGATGCACATCGA+AGG | + | chr4_3:69209094-69209113 | None:intergenic | 45.0% | |
| GATGTGCATCAGTCAACTGT+AGG | - | chr4_3:69209096-69209115 | Msa0658970:intron | 45.0% | |
| GAATCATAAAGTAGGGGGGA+GGG | + | chr4_3:69209283-69209302 | None:intergenic | 45.0% | |
| AGAATCATAAAGTAGGGGGG+AGG | + | chr4_3:69209284-69209303 | None:intergenic | 45.0% | |
| GTACAACCAATTGTCTGGGA+AGG | + | chr4_3:69209426-69209445 | None:intergenic | 45.0% | |
| AGCTCTTCAAGTAGCCTCAA+AGG | - | chr4_3:69209573-69209592 | Msa0658970:intron | 45.0% | |
| CTCTCTCAGAATCACCTTTG+AGG | + | chr4_3:69209590-69209609 | None:intergenic | 45.0% | |
| GTTGAACTGTGGGATGTATC+AGG | - | chr4_3:69209618-69209637 | Msa0658970:CDS | 45.0% | |
| GAAGACGAGTTTGCAGAAGT+GGG | - | chr4_3:69209820-69209839 | Msa0658970:intron | 45.0% | |
| ! | TGGGACATTTTCAGCTCCTT+TGG | - | chr4_3:69209862-69209881 | Msa0658970:CDS | 45.0% |
| ! | GGGACATTTTCAGCTCCTTT+GGG | - | chr4_3:69209863-69209882 | Msa0658970:CDS | 45.0% |
| !!! | TTTTCAGCTCCTTTGGGATC+TGG | - | chr4_3:69209869-69209888 | Msa0658970:CDS | 45.0% |
| TTGTTGATGTTGCACGCCAA+TGG | - | chr4_3:69209984-69210003 | Msa0658970:intron | 45.0% | |
| TGTTGATGTTGCACGCCAAT+GGG | - | chr4_3:69209985-69210004 | Msa0658970:intron | 45.0% | |
| ! | TTGAGGCGCTTACTGCAATA+AGG | + | chr4_3:69210081-69210100 | None:intergenic | 45.0% |
| TCTGCTTTACTCGACTGATG+AGG | - | chr4_3:69210562-69210581 | Msa0658970:intron | 45.0% | |
| GTCCTATGTAGAAGACCCTT+AGG | - | chr4_3:69210727-69210746 | Msa0658970:intron | 45.0% | |
| TGCCTAAGGGTCTTCTACAT+AGG | + | chr4_3:69210732-69210751 | None:intergenic | 45.0% | |
| TACAGGCAGCAAAAGAAGCA+AGG | - | chr4_3:69211642-69211661 | Msa0658970:intron | 45.0% | |
| GGTTGTTGAGGATAGAGTGT+GGG | + | chr4_3:69212087-69212106 | None:intergenic | 45.0% | |
| TGGTTGTTGAGGATAGAGTG+TGG | + | chr4_3:69212088-69212107 | None:intergenic | 45.0% | |
| TAGCTTTCAGAGACCGAAAC+TGG | + | chr4_3:69212108-69212127 | None:intergenic | 45.0% | |
| ATCAGTGGACAGGTTACAAG+TGG | + | chr4_3:69212303-69212322 | None:intergenic | 45.0% | |
| !! | AATTATAAATATATCAAATT+CGG | + | chr4_3:69207619-69207638 | None:intergenic | 5.0% |
| !!! | TTTGATATATTTATAATTTT+TGG | - | chr4_3:69207621-69207640 | Msa0658970:CDS | 5.0% |
| !!! | TATTTTTATAAATTAACTTT+GGG | - | chr4_3:69208507-69208526 | Msa0658970:intron | 5.0% |
| !! | ATTAATTATATAATAAATAC+CGG | - | chr4_3:69208918-69208937 | Msa0658970:intron | 5.0% |
| !! | TAAATTTAAACAAAAAATAA+AGG | + | chr4_3:69211730-69211749 | None:intergenic | 5.0% |
| !!! | TTATTTTTTGTTTAAATTTA+TGG | - | chr4_3:69211730-69211749 | Msa0658970:intron | 5.0% |
| !!! | TATTTTTTGTTTAAATTTAT+GGG | - | chr4_3:69211731-69211750 | Msa0658970:intron | 5.0% |
| CGATGGATCTGAAGAGGATC+TGG | + | chr4_3:69207000-69207019 | None:intergenic | 50.0% | |
| GGAACGTGAGAGGGAGAATA+AGG | - | chr4_3:69207270-69207289 | Msa0658970:intron | 50.0% | |
| ! | CATAACGGTGGAGTGCTTTG+TGG | - | chr4_3:69207295-69207314 | Msa0658970:intron | 50.0% |
| ! | CAAGTCAGAGTGCTCGTTGT+TGG | - | chr4_3:69207319-69207338 | Msa0658970:intron | 50.0% |
| TCCCTCTCAACGAGTGTGTT+TGG | - | chr4_3:69207384-69207403 | Msa0658970:CDS | 50.0% | |
| !! | TGACTTTTTCCACACGACGC+GGG | + | chr4_3:69207866-69207885 | None:intergenic | 50.0% |
| GCCACTGAAACTCGTAGATC+GGG | - | chr4_3:69207948-69207967 | Msa0658970:intron | 50.0% | |
| TCCCGATCTACGAGTTTCAG+TGG | + | chr4_3:69207952-69207971 | None:intergenic | 50.0% | |
| CTGAAACTCGTAGATCGGGA+CGG | - | chr4_3:69207952-69207971 | Msa0658970:intron | 50.0% | |
| GTGTGCTGGAAATGAAACGG+AGG | + | chr4_3:69209534-69209553 | None:intergenic | 50.0% | |
| CGAAGACGAGTTTGCAGAAG+TGG | - | chr4_3:69209819-69209838 | Msa0658970:intron | 50.0% | |
| CAGCTGAGATTGCTGCAACT+GGG | - | chr4_3:69209843-69209862 | Msa0658970:CDS | 50.0% | |
| ATGGAACAGGAAGACCACCA+GGG | + | chr4_3:69209898-69209917 | None:intergenic | 50.0% | |
| TATGGAACAGGAAGACCACC+AGG | + | chr4_3:69209899-69209918 | None:intergenic | 50.0% | |
| CCAGGAAAACTCTCAGTCAG+TGG | + | chr4_3:69210049-69210068 | None:intergenic | 50.0% | |
| !! | CCACTGACTGAGAGTTTTCC+TGG | - | chr4_3:69210046-69210065 | Msa0658970:intron | 50.0% |
| ! | CTGACTGAGAGTTTTCCTGG+TGG | - | chr4_3:69210049-69210068 | Msa0658970:intron | 50.0% |
| ! | ACTGAGAGTTTTCCTGGTGG+TGG | - | chr4_3:69210052-69210071 | Msa0658970:intron | 50.0% |
| GGTGAAGGAATGGACCATGT+AGG | + | chr4_3:69211831-69211850 | None:intergenic | 50.0% | |
| TAACATGCTTCCCCCACTTC+CGG | - | chr4_3:69212038-69212057 | Msa0658970:five_prime_UTR | 50.0% | |
| GGAGTTAGATTGCGTTGAGC+CGG | + | chr4_3:69212060-69212079 | None:intergenic | 50.0% | |
| TGTTGAGGATAGAGTGTGGG+TGG | + | chr4_3:69212084-69212103 | None:intergenic | 50.0% | |
| GAGACCGAAACTGGTTGTTG+AGG | + | chr4_3:69212099-69212118 | None:intergenic | 50.0% | |
| CTCACGTTCCCTCCAGAACA+TGG | + | chr4_3:69207260-69207279 | None:intergenic | 55.0% | |
| !! | TGTTCTGGAGGGAACGTGAG+AGG | - | chr4_3:69207260-69207279 | Msa0658970:CDS | 55.0% |
| !! | GTTCTGGAGGGAACGTGAGA+GGG | - | chr4_3:69207261-69207280 | Msa0658970:CDS | 55.0% |
| !! | GTGCTCGTTGTTGGTGACTC+AGG | - | chr4_3:69207328-69207347 | Msa0658970:intron | 55.0% |
| GAAAATTTCCCCGCGTCGTG+TGG | - | chr4_3:69207854-69207873 | Msa0658970:intron | 55.0% | |
| !! | GACTTTTTCCACACGACGCG+GGG | + | chr4_3:69207865-69207884 | None:intergenic | 55.0% |
| AGGGCAAGCAGTCACATGCT+CGG | + | chr4_3:69209264-69209283 | None:intergenic | 55.0% | |
| GTCTGGGAAGGACGAGCAAT+GGG | + | chr4_3:69209414-69209433 | None:intergenic | 55.0% | |
| TGTCTGGGAAGGACGAGCAA+TGG | + | chr4_3:69209415-69209434 | None:intergenic | 55.0% | |
| GCTCGTCCTTCCCAGACAAT+TGG | - | chr4_3:69209417-69209436 | Msa0658970:CDS | 55.0% | |
| GCAGCTGAGATTGCTGCAAC+TGG | - | chr4_3:69209842-69209861 | Msa0658970:CDS | 55.0% | |
| !! | TCAGCTCCTTTGGGATCTGG+CGG | - | chr4_3:69209872-69209891 | Msa0658970:CDS | 55.0% |
| ! | GTTGCAAAAGAGGGTGCGAG+AGG | - | chr4_3:69209947-69209966 | Msa0658970:intron | 55.0% |
| AACCCTGCTTCTCGACCCAT+TGG | + | chr4_3:69210003-69210022 | None:intergenic | 55.0% | |
| !!! | GAGAGTTTTCCTGGTGGTGG+AGG | - | chr4_3:69210055-69210074 | Msa0658970:intron | 55.0% |
| GGAATGGACCATGTAGGTGC+AGG | + | chr4_3:69211825-69211844 | None:intergenic | 55.0% | |
| ATTGCGTTGAGCCGGAAGTG+GGG | + | chr4_3:69212052-69212071 | None:intergenic | 55.0% | |
| GATTGCGTTGAGCCGGAAGT+GGG | + | chr4_3:69212053-69212072 | None:intergenic | 55.0% | |
| AGATTGCGTTGAGCCGGAAG+TGG | + | chr4_3:69212054-69212073 | None:intergenic | 55.0% | |
| TGAGGATAGAGTGTGGGTGG+TGG | + | chr4_3:69212081-69212100 | None:intergenic | 55.0% | |
| AGGCTTTCTCAGTGCGGAGA+AGG | - | chr4_3:69212338-69212357 | Msa0658970:five_prime_UTR | 55.0% | |
| GGAGCTGAGCGAAGCTAGTG+TGG | - | chr4_3:69208399-69208418 | Msa0658970:intron | 60.0% | |
| ACGCCAATGGGTCGAGAAGC+AGG | - | chr4_3:69209997-69210016 | Msa0658970:intron | 60.0% | |
| CGCCAATGGGTCGAGAAGCA+GGG | - | chr4_3:69209998-69210017 | Msa0658970:intron | 60.0% | |
| ! | GGGTTTGCTTCCATCCAGCG+AGG | - | chr4_3:69210018-69210037 | Msa0658970:intron | 60.0% |
| AGTGGAAGCTCCTCGCTGGA+TGG | + | chr4_3:69210031-69210050 | None:intergenic | 60.0% | |
| AGTCAGTGGAAGCTCCTCGC+TGG | + | chr4_3:69210035-69210054 | None:intergenic | 60.0% | |
| GCAATAAGGCCTCCACCACC+AGG | + | chr4_3:69210067-69210086 | None:intergenic | 60.0% | |
| TTGCGTTGAGCCGGAAGTGG+GGG | + | chr4_3:69212051-69212070 | None:intergenic | 60.0% | |
| ! | GAGGGTGCGAGAGGAAGCAG+CGG | - | chr4_3:69209956-69209975 | Msa0658970:intron | 65.0% |
| AGGGTGCGAGAGGAAGCAGC+GGG | - | chr4_3:69209957-69209976 | Msa0658970:intron | 65.0% | |
| CCAGGGCCGCCAGATCCCAA+AGG | + | chr4_3:69209881-69209900 | None:intergenic | 70.0% | |
| !! | CCTTTGGGATCTGGCGGCCC+TGG | - | chr4_3:69209878-69209897 | Msa0658970:CDS | 70.0% |
| TTGGGATCTGGCGGCCCTGG+TGG | - | chr4_3:69209881-69209900 | Msa0658970:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 69206855 | 69212439 | 69206855 | ID=Msa0658970;Name=Msa0658970 |
| chr4_3 | mRNA | 69206855 | 69212439 | 69206855 | ID=Msa0658970-mRNA-1;Parent=Msa0658970;Name=Msa0658970-mRNA-1;_AED=0.06;_eAED=0.06;_QI=404|1|1|1|1|1|7|230|342 |
| chr4_3 | exon | 69206855 | 69207280 | 69206855 | ID=Msa0658970-mRNA-1:exon:20288;Parent=Msa0658970-mRNA-1 |
| chr4_3 | exon | 69207357 | 69207505 | 69207357 | ID=Msa0658970-mRNA-1:exon:20287;Parent=Msa0658970-mRNA-1 |
| chr4_3 | exon | 69207594 | 69207647 | 69207594 | ID=Msa0658970-mRNA-1:exon:20286;Parent=Msa0658970-mRNA-1 |
| chr4_3 | exon | 69209207 | 69209511 | 69209207 | ID=Msa0658970-mRNA-1:exon:20285;Parent=Msa0658970-mRNA-1 |
| chr4_3 | exon | 69209604 | 69209745 | 69209604 | ID=Msa0658970-mRNA-1:exon:20284;Parent=Msa0658970-mRNA-1 |
| chr4_3 | exon | 69209836 | 69209927 | 69209836 | ID=Msa0658970-mRNA-1:exon:20283;Parent=Msa0658970-mRNA-1 |
| chr4_3 | exon | 69211945 | 69212439 | 69211945 | ID=Msa0658970-mRNA-1:exon:20282;Parent=Msa0658970-mRNA-1 |
| chr4_3 | five_prime_UTR | 69212036 | 69212439 | 69212036 | ID=Msa0658970-mRNA-1:five_prime_utr;Parent=Msa0658970-mRNA-1 |
| chr4_3 | CDS | 69211945 | 69212035 | 69211945 | ID=Msa0658970-mRNA-1:cds;Parent=Msa0658970-mRNA-1 |
| chr4_3 | CDS | 69209836 | 69209927 | 69209836 | ID=Msa0658970-mRNA-1:cds;Parent=Msa0658970-mRNA-1 |
| chr4_3 | CDS | 69209604 | 69209745 | 69209604 | ID=Msa0658970-mRNA-1:cds;Parent=Msa0658970-mRNA-1 |
| chr4_3 | CDS | 69209207 | 69209511 | 69209207 | ID=Msa0658970-mRNA-1:cds;Parent=Msa0658970-mRNA-1 |
| chr4_3 | CDS | 69207594 | 69207647 | 69207594 | ID=Msa0658970-mRNA-1:cds;Parent=Msa0658970-mRNA-1 |
| chr4_3 | CDS | 69207357 | 69207505 | 69207357 | ID=Msa0658970-mRNA-1:cds;Parent=Msa0658970-mRNA-1 |
| chr4_3 | CDS | 69207085 | 69207280 | 69207085 | ID=Msa0658970-mRNA-1:cds;Parent=Msa0658970-mRNA-1 |
| chr4_3 | three_prime_UTR | 69206855 | 69207084 | 69206855 | ID=Msa0658970-mRNA-1:three_prime_utr;Parent=Msa0658970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
