Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705010 | XP_003630114.1 | 99.415 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 0.0 | 694 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705010 | sp|Q9C5J9|LIIP1_ARATH | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705010 | G7LBB0 | 99.415 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 0.0 | 694 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0605510 | Msa0705010 | 0.803109 | 4.077768e-49 | -8.615850e-47 |
| Msa0622790 | Msa0705010 | 0.824117 | 9.603701e-54 | -8.615850e-47 |
| Msa0646470 | Msa0705010 | 0.824248 | 8.946895e-54 | -8.615850e-47 |
| Msa0658970 | Msa0705010 | 0.968574 | 7.166247e-129 | -8.615850e-47 |
| Msa0705010 | Msa0705090 | 0.852086 | 5.815271e-61 | -8.615850e-47 |
| Msa0705010 | Msa1039900 | 0.810201 | 1.296610e-50 | -8.615850e-47 |
| Msa0705010 | Msa1128280 | 0.809816 | 1.569655e-50 | -8.615850e-47 |
| Msa0705010 | Msa1165270 | 0.810564 | 1.082738e-50 | -8.615850e-47 |
| Msa0705010 | Msa1178580 | 0.820448 | 6.822747e-53 | -8.615850e-47 |
| Msa0705010 | Msa1233850 | 0.824650 | 7.196862e-54 | -8.615850e-47 |
| Msa0705010 | Msa1235460 | 0.829564 | 4.797130e-55 | -8.615850e-47 |
| Msa0705010 | Msa1276150 | 0.816804 | 4.577303e-52 | -8.615850e-47 |
| Msa0705010 | Msa1341060 | 0.806085 | 9.761168e-50 | -8.615850e-47 |
| Msa0190870 | Msa0705010 | 0.805521 | 1.282467e-49 | -8.615850e-47 |
| Msa0202490 | Msa0705010 | 0.838121 | 3.471317e-57 | -8.615850e-47 |
| Msa0385500 | Msa0705010 | 0.809294 | 2.031375e-50 | -8.615850e-47 |
| Msa0257490 | Msa0705010 | 0.805018 | 1.634173e-49 | -8.615850e-47 |
| Msa0284180 | Msa0705010 | 0.836738 | 7.848410e-57 | -8.615850e-47 |
| Msa0336450 | Msa0705010 | 0.833448 | 5.301975e-56 | -8.615850e-47 |
| Msa0336540 | Msa0705010 | 0.845177 | 4.776834e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705010 | MtrunA17_Chr8g0383221 | 99.415 | 342 | 2 | 0 | 1 | 342 | 1 | 342 | 0.0 | 694 |
| Msa0705010 | MtrunA17_Chr7g0265001 | 28.369 | 141 | 76 | 3 | 23 | 162 | 18 | 134 | 2.10e-12 | 65.9 |
| Msa0705010 | MtrunA17_Chr1g0180291 | 29.078 | 141 | 74 | 4 | 23 | 162 | 16 | 131 | 7.28e-12 | 63.9 |
| Msa0705010 | MtrunA17_Chr8g0335471 | 25.749 | 167 | 93 | 4 | 23 | 189 | 10 | 145 | 1.05e-11 | 63.5 |
| Msa0705010 | MtrunA17_Chr8g0384311 | 31.902 | 163 | 81 | 7 | 23 | 183 | 15 | 149 | 1.25e-11 | 63.2 |
| Msa0705010 | MtrunA17_Chr7g0250531 | 25.150 | 167 | 94 | 4 | 23 | 189 | 10 | 145 | 6.72e-11 | 61.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0705010 | AT5G64813.1 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| Msa0705010 | AT5G64813.3 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| Msa0705010 | AT5G64813.2 | 77.011 | 348 | 65 | 7 | 2 | 342 | 3 | 342 | 0.0 | 513 |
| Msa0705010 | AT5G09910.1 | 70.349 | 344 | 86 | 5 | 2 | 342 | 3 | 333 | 4.03e-163 | 459 |
| Msa0705010 | AT5G09910.4 | 70.349 | 344 | 86 | 5 | 2 | 342 | 3 | 333 | 4.03e-163 | 459 |
| Msa0705010 | AT5G09910.2 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.28e-145 | 413 |
| Msa0705010 | AT5G09910.3 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.28e-145 | 413 |
| Msa0705010 | AT5G09910.5 | 65.698 | 344 | 85 | 6 | 2 | 342 | 3 | 316 | 3.28e-145 | 413 |
| Msa0705010 | AT1G43890.3 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.44e-13 | 68.6 |
| Msa0705010 | AT1G43890.1 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.44e-13 | 68.6 |
| Msa0705010 | AT1G43890.2 | 32.515 | 163 | 80 | 6 | 23 | 183 | 15 | 149 | 2.44e-13 | 68.6 |
| Msa0705010 | AT5G03530.2 | 29.605 | 152 | 78 | 5 | 23 | 173 | 15 | 138 | 3.64e-11 | 62.4 |
| Msa0705010 | AT5G03530.1 | 29.605 | 152 | 78 | 5 | 23 | 173 | 15 | 138 | 3.64e-11 | 62.4 |
Find 116 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTTGAAGATCTTTGTATTT+TGG | 0.152023 | 4_4:-77544368 | Msa0705010:exon |
| TTAGTTCACCTTATCGTTAA+AGG | 0.183622 | 4_4:-77547187 | Msa0705010:CDS |
| CCTGTTCCATATATTGTTAT+TGG | 0.188210 | 4_4:-77546663 | Msa0705010:CDS |
| CATTTCCAGCACACTACTTA+TGG | 0.225792 | 4_4:-77547031 | Msa0705010:intron |
| AGAAGAAAGTGAACAATTTA+CGG | 0.249416 | 4_4:+77549655 | None:intergenic |
| TTGTTACCAATAACAATATA+TGG | 0.272612 | 4_4:+77546657 | None:intergenic |
| CACACTACTTATGGAAATTC+TGG | 0.286680 | 4_4:-77547022 | Msa0705010:CDS |
| GTTAAGAATTTAGTTAGTTC+TGG | 0.300390 | 4_4:-77549351 | Msa0705010:five_prime_UTR |
| GTGCTACATGTTCAAAGTTT+GGG | 0.304639 | 4_4:-77544212 | Msa0705010:three_prime_UTR |
| GGTGCTACATGTTCAAAGTT+TGG | 0.322891 | 4_4:-77544213 | Msa0705010:three_prime_UTR |
| GGAACGTGAGAGGGAGAATA+AGG | 0.330995 | 4_4:-77549303 | Msa0705010:CDS |
| TCAGAGAAGATGCGTTACTA+TGG | 0.331220 | 4_4:-77549512 | Msa0705010:five_prime_UTR |
| TTAGTTAGTTCTGGAGGGTT+TGG | 0.337796 | 4_4:-77549342 | Msa0705010:five_prime_UTR |
| GGGAGAATTTAAATGATATA+TGG | 0.338096 | 4_4:-77544191 | Msa0705010:three_prime_UTR |
| GTTGAACTGTGGGATGTATC+AGG | 0.360390 | 4_4:-77546953 | Msa0705010:CDS |
| CCTTTGGGATCTGGCGGCCC+TGG | 0.368152 | 4_4:-77546693 | Msa0705010:CDS |
| TTGAGGCGCTTACTGCAATA+AGG | 0.372575 | 4_4:+77546493 | None:intergenic |
| AAAGTGAACAATTTACGGTT+TGG | 0.375292 | 4_4:+77549660 | None:intergenic |
| GCAGCTGAGATTGCTGCAAC+TGG | 0.375965 | 4_4:-77546729 | Msa0705010:CDS |
| TTCTCATTCTTGCAGGTGTT+GGG | 0.377533 | 4_4:-77547219 | Msa0705010:intron |
| GAACCAGACAAAGAAAATCT+AGG | 0.383439 | 4_4:+77544437 | None:intergenic |
| ACGCCAATGGGTCGAGAAGC+AGG | 0.392805 | 4_4:-77546574 | Msa0705010:CDS |
| TCAGTTGAAGGAGATTGATT+TGG | 0.394157 | 4_4:+77549605 | None:intergenic |
| CTTGATTAGTGTATGATTAG+TGG | 0.394949 | 4_4:-77549423 | Msa0705010:five_prime_UTR |
| GATGATCAGTCTTATAATAC+AGG | 0.395791 | 4_4:-77544657 | Msa0705010:CDS |
| AGGGTTTGGAAACCATGTTC+TGG | 0.396334 | 4_4:-77549328 | Msa0705010:exon |
| CTACTGTACAACCAATTGTC+TGG | 0.410194 | 4_4:+77547143 | None:intergenic |
| GCTCGTCCTTCCCAGACAAT+TGG | 0.412167 | 4_4:-77547154 | Msa0705010:CDS |
| CACTGATATGTATTCTTACA+TGG | 0.413105 | 4_4:-77544326 | Msa0705010:three_prime_UTR |
| ACAATTTACGGTTTGGATCA+AGG | 0.426177 | 4_4:+77549667 | None:intergenic |
| TAGCTTTCAGAGACCGAAAC+TGG | 0.435235 | 4_4:+77544467 | None:intergenic |
| CAGAGAAGATGCGTTACTAT+GGG | 0.450434 | 4_4:-77549511 | Msa0705010:five_prime_UTR |
| CTCTCTCAGAATCACCTTTG+AGG | 0.453797 | 4_4:+77546984 | None:intergenic |
| CCAATAACAATATATGGAAC+AGG | 0.458650 | 4_4:+77546663 | None:intergenic |
| AAAAGAAGCAAGGTATGATA+AGG | 0.458953 | 4_4:-77544920 | Msa0705010:CDS |
| ATTCGCTGAGAAGATCTTTG+AGG | 0.468161 | 4_4:+77544723 | None:intergenic |
| GTCTGGGAAGGACGAGCAAT+GGG | 0.472190 | 4_4:+77547160 | None:intergenic |
| ATGTGGCGTTGTTCAGTTGA+AGG | 0.475100 | 4_4:+77549593 | None:intergenic |
| AGCTGATATTGTTGCAAAAG+AGG | 0.478431 | 4_4:-77546634 | Msa0705010:CDS |
| CTATCCTCAACAACCAGTTT+CGG | 0.481026 | 4_4:-77544480 | Msa0705010:CDS |
| CGAAGACGAGTTTGCAGAAG+TGG | 0.483875 | 4_4:-77546752 | Msa0705010:CDS |
| AGATTGCGTTGAGCCGGAAG+TGG | 0.491900 | 4_4:+77544521 | None:intergenic |
| GTGCTCGTTGTTGGTGACTC+AGG | 0.492664 | 4_4:-77549245 | Msa0705010:intron |
| CTCACGTTCCCTCCAGAACA+TGG | 0.493187 | 4_4:+77549316 | None:intergenic |
| GGAGTTAGATTGCGTTGAGC+CGG | 0.493866 | 4_4:+77544515 | None:intergenic |
| AACCCTGCTTCTCGACCCAT+TGG | 0.497798 | 4_4:+77546571 | None:intergenic |
| TTGTTGATGTTGCACGCCAA+TGG | 0.504775 | 4_4:-77546587 | Msa0705010:CDS |
| CATAACGGTGGAGTGCTTTG+TGG | 0.506067 | 4_4:-77549278 | Msa0705010:CDS |
| TGGTGGTTGAATCTATTTGA+CGG | 0.509052 | 4_4:-77549448 | Msa0705010:five_prime_UTR |
| AGTCAGTGGAAGCTCCTCGC+TGG | 0.509155 | 4_4:+77546539 | None:intergenic |
| ATGAAATACCTGCACCTACA+TGG | 0.516650 | 4_4:-77544758 | Msa0705010:CDS |
| TGGGAGAACCTTTAACGATA+AGG | 0.517212 | 4_4:+77547179 | None:intergenic |
| AACGATAAGGTGAACTAAAG+AGG | 0.519763 | 4_4:+77547192 | None:intergenic |
| TTGGGATCTGGCGGCCCTGG+TGG | 0.522309 | 4_4:-77546690 | Msa0705010:CDS |
| TGTTGATGTTGCACGCCAAT+GGG | 0.527951 | 4_4:-77546586 | Msa0705010:CDS |
| AAGAATTTAGTTAGTTCTGG+AGG | 0.530347 | 4_4:-77549348 | Msa0705010:five_prime_UTR |
| TGAGGATAGAGTGTGGGTGG+TGG | 0.530789 | 4_4:+77544494 | None:intergenic |
| GAGATTTCTTTGTTGAACTG+TGG | 0.535232 | 4_4:-77546964 | Msa0705010:CDS |
| CGATGGATCTGAAGAGGATG+TGG | 0.535841 | 4_4:+77549576 | None:intergenic |
| TGAGAAGATCTTTGAGGTGA+AGG | 0.537945 | 4_4:+77544729 | None:intergenic |
| AGATCTTTGAGGTGAAGGAA+TGG | 0.539829 | 4_4:+77544734 | None:intergenic |
| TACTGTACAACCAATTGTCT+GGG | 0.540418 | 4_4:+77547144 | None:intergenic |
| AGTGGAAGCTCCTCGCTGGA+TGG | 0.542183 | 4_4:+77546543 | None:intergenic |
| AGGCTTTCTCAGTGCGGAGA+AGG | 0.542272 | 4_4:-77544234 | Msa0705010:three_prime_UTR |
| CAAGTCAGAGTGCTCGTTGT+TGG | 0.544697 | 4_4:-77549254 | Msa0705010:CDS |
| AAATGAATGAATCAGTGGAC+AGG | 0.544902 | 4_4:+77544262 | None:intergenic |
| AACCAGACAAAGAAAATCTA+GGG | 0.551575 | 4_4:+77544438 | None:intergenic |
| GGAAGCATGTTATACTTGTA+CGG | 0.551656 | 4_4:+77544545 | None:intergenic |
| AGATTTCTTTGTTGAACTGT+GGG | 0.551856 | 4_4:-77546963 | Msa0705010:CDS |
| GGAATGGACCATGTAGGTGC+AGG | 0.556023 | 4_4:+77544750 | None:intergenic |
| CAGCTGAGATTGCTGCAACT+GGG | 0.556342 | 4_4:-77546728 | Msa0705010:CDS |
| TTTGGATGTATGAAGTATGA+AGG | 0.556714 | 4_4:+77549623 | None:intergenic |
| TGTCTGGGAAGGACGAGCAA+TGG | 0.556939 | 4_4:+77547159 | None:intergenic |
| TGTTGAGGATAGAGTGTGGG+TGG | 0.563767 | 4_4:+77544491 | None:intergenic |
| TCAGTGAATAAAAGAGAGAT+CGG | 0.566338 | 4_4:+77546909 | None:intergenic |
| GATTGCGTTGAGCCGGAAGT+GGG | 0.566553 | 4_4:+77544522 | None:intergenic |
| GCTGATATTGTTGCAAAAGA+GGG | 0.567194 | 4_4:-77546633 | Msa0705010:CDS |
| GCAATAAGGCCTCCACCACC+AGG | 0.569478 | 4_4:+77546507 | None:intergenic |
| AGCTCTTCAAGTAGCCTCAA+AGG | 0.575296 | 4_4:-77546998 | Msa0705010:CDS |
| AGAATTTAGTTAGTTCTGGA+GGG | 0.578978 | 4_4:-77549347 | Msa0705010:five_prime_UTR |
| TGCTACATGTTCAAAGTTTG+GGG | 0.583833 | 4_4:-77544211 | Msa0705010:three_prime_UTR |
| CGCCAATGGGTCGAGAAGCA+GGG | 0.583957 | 4_4:-77546573 | Msa0705010:CDS |
| GAGGGTGCGAGAGGAAGCAG+CGG | 0.585539 | 4_4:-77546615 | Msa0705010:CDS |
| CTTTAGCGATGGATCTGAAG+AGG | 0.587508 | 4_4:+77549570 | None:intergenic |
| AGAAGCAAGGTATGATAAGG+AGG | 0.588578 | 4_4:-77544917 | Msa0705010:CDS |
| TTGCGTTGAGCCGGAAGTGG+GGG | 0.590536 | 4_4:+77544524 | None:intergenic |
| TATGGAACAGGAAGACCACC+AGG | 0.593874 | 4_4:+77546675 | None:intergenic |
| TGTTCTGGAGGGAACGTGAG+AGG | 0.595631 | 4_4:-77549313 | Msa0705010:CDS |
| ATCAGTGGACAGGTTACAAG+TGG | 0.603295 | 4_4:+77544272 | None:intergenic |
| GTTTGGAAACCATGTTCTGG+AGG | 0.608805 | 4_4:-77549325 | Msa0705010:exon |
| CCAGGGCCGCCAGATCCCAA+AGG | 0.609580 | 4_4:+77546693 | None:intergenic |
| GAAATCAAGAGCTTTAGCGA+TGG | 0.613254 | 4_4:+77549559 | None:intergenic |
| GTACAACCAATTGTCTGGGA+AGG | 0.616763 | 4_4:+77547148 | None:intergenic |
| CCAGGAAAACTCTCAGTCAG+TGG | 0.617823 | 4_4:+77546525 | None:intergenic |
| TGGTTGTACAGTAGATGTGA+AGG | 0.618127 | 4_4:-77547134 | Msa0705010:intron |
| GTTCTGGAGGGAACGTGAGA+GGG | 0.619113 | 4_4:-77549312 | Msa0705010:CDS |
| TACAGGCAGCAAAAGAAGCA+AGG | 0.630672 | 4_4:-77544930 | Msa0705010:intron |
| GAGACCGAAACTGGTTGTTG+AGG | 0.633597 | 4_4:+77544476 | None:intergenic |
| TTTGGAAACCATGTTCTGGA+GGG | 0.634282 | 4_4:-77549324 | Msa0705010:exon |
| GGTTGTTGAGGATAGAGTGT+GGG | 0.640336 | 4_4:+77544488 | None:intergenic |
| AGAGAAGATGCGTTACTATG+GGG | 0.640473 | 4_4:-77549510 | Msa0705010:five_prime_UTR |
| AGGGAGAATAAGGAACATAA+CGG | 0.642381 | 4_4:-77549293 | Msa0705010:CDS |
| GTTGCAAAAGAGGGTGCGAG+AGG | 0.651488 | 4_4:-77546624 | Msa0705010:CDS |
| ATTGCGTTGAGCCGGAAGTG+GGG | 0.655325 | 4_4:+77544523 | None:intergenic |
| AGGGTGCGAGAGGAAGCAGC+GGG | 0.661507 | 4_4:-77546614 | Msa0705010:CDS |
| TCAGCTCCTTTGGGATCTGG+CGG | 0.672711 | 4_4:-77546699 | Msa0705010:CDS |
| ATGATCAGTCTTATAATACA+GGG | 0.679216 | 4_4:-77544656 | Msa0705010:intron |
| GAAGACGAGTTTGCAGAAGT+GGG | 0.680237 | 4_4:-77546751 | Msa0705010:CDS |
| GAGAATAAGGAACATAACGG+TGG | 0.686740 | 4_4:-77549290 | Msa0705010:CDS |
| CACGTGCTATTTGATCGCGT+GGG | 0.692971 | 4_4:-77549733 | None:intergenic |
| TGGTTGTTGAGGATAGAGTG+TGG | 0.696987 | 4_4:+77544487 | None:intergenic |
| GGGTTTGCTTCCATCCAGCG+AGG | 0.699492 | 4_4:-77546553 | Msa0705010:CDS |
| GGTGAAGGAATGGACCATGT+AGG | 0.709587 | 4_4:+77544744 | None:intergenic |
| ATTTACGGTTTGGATCAAGG+TGG | 0.725079 | 4_4:+77549670 | None:intergenic |
| TAGATGAAATATCTTCTCAG+CGG | 0.726315 | 4_4:-77544701 | Msa0705010:CDS |
| ATGGAACAGGAAGACCACCA+GGG | 0.755247 | 4_4:+77546676 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATAATATTAAATTTTATCAC+AGG | + | chr4_4:77545654-77545673 | None:intergenic | 10.0% |
| !!! | AATATTATTTGATTTTGAAT+TGG | - | chr4_4:77545666-77545685 | Msa0705010:intron | 10.0% |
| !!! | CTATTTTTATAAATTAACTT+TGG | - | chr4_4:77545806-77545825 | Msa0705010:intron | 10.0% |
| !!! | ATTTTTATAAATTAACTTTG+GGG | - | chr4_4:77545808-77545827 | Msa0705010:intron | 10.0% |
| !! | GGTATTTATTATATAATTAA+TGG | + | chr4_4:77546219-77546238 | None:intergenic | 10.0% |
| !! | AAAAAAATCTAAATAGAAAT+AGG | - | chr4_4:77547907-77547926 | Msa0705010:intron | 10.0% |
| !!! | AATTTATTTTCAAAATCAAA+AGG | - | chr4_4:77548562-77548581 | Msa0705010:intron | 10.0% |
| !! | TAAATAAATAAATAAATACG+AGG | + | chr4_4:77548854-77548873 | None:intergenic | 10.0% |
| !! | ATATAATCCATTTATAAAGT+AGG | - | chr4_4:77545877-77545896 | Msa0705010:intron | 15.0% |
| !!! | TTTTATAAAACTGAAACAAT+AGG | + | chr4_4:77547011-77547030 | None:intergenic | 15.0% |
| !! | ATAAAATTCTATAGAGAATA+TGG | - | chr4_4:77547987-77548006 | Msa0705010:intron | 15.0% |
| !!! | TCTAATCTAGTTTTTTTTAA+GGG | + | chr4_4:77548522-77548541 | None:intergenic | 15.0% |
| !!! | TTCTAATCTAGTTTTTTTTA+AGG | + | chr4_4:77548523-77548542 | None:intergenic | 15.0% |
| !!! | TAGAAGTTGATTTTTTTTAT+CGG | - | chr4_4:77548538-77548557 | Msa0705010:intron | 15.0% |
| !!! | AGTAGTTTTAATTTTTTTGT+CGG | - | chr4_4:77548915-77548934 | Msa0705010:intron | 15.0% |
| !!! | TGGATTTTGTTTTGAAAAAT+TGG | - | chr4_4:77544405-77544424 | Msa0705010:CDS | 20.0% |
| !!! | ATTTTGTTTTGAAAAATTGG+TGG | - | chr4_4:77544408-77544427 | Msa0705010:CDS | 20.0% |
| !! | ACTGTTATAATATTTGATTG+AGG | - | chr4_4:77545297-77545316 | Msa0705010:intron | 20.0% |
| !! | TTCAATCAATCAAATATTAC+AGG | - | chr4_4:77545528-77545547 | Msa0705010:intron | 20.0% |
| !! | TATCAAAATCTAATGTTACT+AGG | - | chr4_4:77545836-77545855 | Msa0705010:intron | 20.0% |
| !! | ATCAAAATCTAATGTTACTA+GGG | - | chr4_4:77545837-77545856 | Msa0705010:intron | 20.0% |
| !! | AGCAAATTAAGAAATAGAAA+CGG | + | chr4_4:77546079-77546098 | None:intergenic | 20.0% |
| !! | AGCAAATTAAGAAATAGAAA+CGG | + | chr4_4:77546079-77546098 | None:intergenic | 20.0% |
| !!! | TTATTTTCTTCACTAATGTT+TGG | + | chr4_4:77546534-77546553 | None:intergenic | 20.0% |
| !! | TTGTTACCAATAACAATATA+TGG | + | chr4_4:77547219-77547238 | None:intergenic | 20.0% |
| !! | TTAGAAATTAGCATTAACAT+CGG | + | chr4_4:77547486-77547505 | None:intergenic | 20.0% |
| !!! | CTATTTCATCTGATATTTTA+TGG | + | chr4_4:77547786-77547805 | None:intergenic | 20.0% |
| !!! | ACAAATTGGTAGTATTAATA+AGG | - | chr4_4:77548216-77548235 | Msa0705010:intron | 20.0% |
| !!! | CAAATTGGTAGTATTAATAA+GGG | - | chr4_4:77548217-77548236 | Msa0705010:intron | 20.0% |
| !!! | AAATTGGTAGTATTAATAAG+GGG | - | chr4_4:77548218-77548237 | Msa0705010:intron | 20.0% |
| !! | TATTAATAAGGGGAAATATT+TGG | - | chr4_4:77548228-77548247 | Msa0705010:intron | 20.0% |
| !! | AACTTAAGATGTTATACTAT+CGG | - | chr4_4:77548730-77548749 | Msa0705010:intron | 20.0% |
| !! | TAAAACTACTATAAGAAGAA+TGG | + | chr4_4:77548905-77548924 | None:intergenic | 20.0% |
| !!! | CAACAACAATAAATTTTGTA+AGG | + | chr4_4:77549288-77549307 | None:intergenic | 20.0% |
| ! | AGAAGAAAGTGAACAATTTA+CGG | + | chr4_4:77544221-77544240 | None:intergenic | 25.0% |
| ! | GTTAAGAATTTAGTTAGTTC+TGG | - | chr4_4:77544522-77544541 | Msa0705010:CDS | 25.0% |
| !!! | GATTTTGATAGAATTGATTC+CGG | - | chr4_4:77544726-77544745 | Msa0705010:CDS | 25.0% |
| !! | GTTTAAGTTAGAATTAACTC+TGG | - | chr4_4:77544795-77544814 | Msa0705010:intron | 25.0% |
| !!! | GTTTCTAAGGTACATAAATA+AGG | + | chr4_4:77545076-77545095 | None:intergenic | 25.0% |
| !!! | ACTTTACTGTGATTTTTTAG+CGG | - | chr4_4:77545126-77545145 | Msa0705010:intron | 25.0% |
| !! | TTTGGAATTTAGAAATCCAT+TGG | - | chr4_4:77545211-77545230 | Msa0705010:intron | 25.0% |
| ! | TTGGAATTTAGAAATCCATT+GGG | - | chr4_4:77545212-77545231 | Msa0705010:intron | 25.0% |
| ! | CTAAAATTAGCCGTAATATA+TGG | - | chr4_4:77545340-77545359 | Msa0705010:intron | 25.0% |
| ! | TTGACAAATGTCAATTTCTT+TGG | - | chr4_4:77545456-77545475 | Msa0705010:intron | 25.0% |
| ! | ATCAAATATTACAGGAAAGT+AGG | - | chr4_4:77545536-77545555 | Msa0705010:intron | 25.0% |
| ! | AAGTAGGTTAACTTTGTATA+TGG | - | chr4_4:77545552-77545571 | Msa0705010:intron | 25.0% |
| ! | AGTAGGTTAACTTTGTATAT+GGG | - | chr4_4:77545553-77545572 | Msa0705010:intron | 25.0% |
| !! | TTTTGAATTGGTTAAAGTTC+AGG | - | chr4_4:77545678-77545697 | Msa0705010:intron | 25.0% |
| ! | ACTTAAGCCTACTTTATAAA+TGG | + | chr4_4:77545887-77545906 | None:intergenic | 25.0% |
| ! | ATTTGAAAAACTCTCAGATA+TGG | - | chr4_4:77545936-77545955 | Msa0705010:intron | 25.0% |
| !!! | ATTTTTTTATGACGTGAATC+AGG | + | chr4_4:77546186-77546205 | None:intergenic | 25.0% |
| ! | ATAGAGAGAATCATAAAGTA+GGG | + | chr4_4:77546592-77546611 | None:intergenic | 25.0% |
| ! | AATAGAGAGAATCATAAAGT+AGG | + | chr4_4:77546593-77546612 | None:intergenic | 25.0% |
| !! | ATTAAGATGTCTCTGAAAAA+TGG | + | chr4_4:77546617-77546636 | None:intergenic | 25.0% |
| !!! | CTCTTTTATTCACTGATTAA+TGG | - | chr4_4:77546971-77546990 | Msa0705010:CDS | 25.0% |
| ! | GTATACATGTTTAGATTTGA+AGG | - | chr4_4:77547032-77547051 | Msa0705010:intron | 25.0% |
| ! | ATTAACATCGGAATTATTCA+TGG | + | chr4_4:77547474-77547493 | None:intergenic | 25.0% |
| ! | GATGTTAATGCTAATTTCTA+AGG | - | chr4_4:77547485-77547504 | Msa0705010:intron | 25.0% |
| ! | TCAAGTATTAACAAGTATAG+TGG | - | chr4_4:77547512-77547531 | Msa0705010:intron | 25.0% |
| !!! | TGGAATAGCTTTGTTTTAAT+GGG | + | chr4_4:77547698-77547717 | None:intergenic | 25.0% |
| !!! | ATGGAATAGCTTTGTTTTAA+TGG | + | chr4_4:77547699-77547718 | None:intergenic | 25.0% |
| !!! | TGAAATAGAGCTATTTTAGA+AGG | - | chr4_4:77547798-77547817 | Msa0705010:intron | 25.0% |
| !!! | GAAATAGAGCTATTTTAGAA+GGG | - | chr4_4:77547799-77547818 | Msa0705010:intron | 25.0% |
| ! | TTCTATAGAGAATATGGAAT+AGG | - | chr4_4:77547993-77548012 | Msa0705010:intron | 25.0% |
| ! | TATACATTCATTACACAACA+AGG | + | chr4_4:77548126-77548145 | None:intergenic | 25.0% |
| ! | TTAATACTACCAATTTGTCT+TGG | + | chr4_4:77548214-77548233 | None:intergenic | 25.0% |
| ! | AGAACAATACATGTATCTTA+AGG | - | chr4_4:77548255-77548274 | Msa0705010:intron | 25.0% |
| ! | GAACAATACATGTATCTTAA+GGG | - | chr4_4:77548256-77548275 | Msa0705010:intron | 25.0% |
| ! | AACAATACATGTATCTTAAG+GGG | - | chr4_4:77548257-77548276 | Msa0705010:intron | 25.0% |
| !!! | ATCACAGGACTTTTAAAAAT+TGG | + | chr4_4:77548396-77548415 | None:intergenic | 25.0% |
| ! | TTTCAAAATCAAAAGGCTAA+TGG | - | chr4_4:77548569-77548588 | Msa0705010:intron | 25.0% |
| ! | AATTCATTATCCATAATGAG+TGG | + | chr4_4:77548655-77548674 | None:intergenic | 25.0% |
| !! | ATGATCAGTCTTATAATACA+GGG | - | chr4_4:77549217-77549236 | Msa0705010:intron | 25.0% |
| !! | GTTTGAAGATCTTTGTATTT+TGG | - | chr4_4:77549505-77549524 | Msa0705010:five_prime_UTR | 25.0% |
| ! | CTAAAAAATGAATGAATCAG+TGG | + | chr4_4:77549619-77549638 | None:intergenic | 25.0% |
| !!! | CTGATTCATTCATTTTTTAG+AGG | - | chr4_4:77549619-77549638 | Msa0705010:five_prime_UTR | 25.0% |
| ! | GGGAGAATTTAAATGATATA+TGG | - | chr4_4:77549682-77549701 | Msa0705010:five_prime_UTR | 25.0% |
| AAAGTGAACAATTTACGGTT+TGG | + | chr4_4:77544216-77544235 | None:intergenic | 30.0% | |
| TTTGGATGTATGAAGTATGA+AGG | + | chr4_4:77544253-77544272 | None:intergenic | 30.0% | |
| CTTGATTAGTGTATGATTAG+TGG | - | chr4_4:77544450-77544469 | Msa0705010:CDS | 30.0% | |
| !! | AAGCTTTTGAGTCTTTGTTT+AGG | - | chr4_4:77544480-77544499 | Msa0705010:CDS | 30.0% |
| !! | AGCTTTTGAGTCTTTGTTTA+GGG | - | chr4_4:77544481-77544500 | Msa0705010:CDS | 30.0% |
| !! | AAGAATTTAGTTAGTTCTGG+AGG | - | chr4_4:77544525-77544544 | Msa0705010:CDS | 30.0% |
| !! | AGAATTTAGTTAGTTCTGGA+GGG | - | chr4_4:77544526-77544545 | Msa0705010:CDS | 30.0% |
| !! | TTCTTCAACTTACTTTTAGC+CGG | + | chr4_4:77544748-77544767 | None:intergenic | 30.0% |
| TAAGTTAGAATTAACTCTGG+AGG | - | chr4_4:77544798-77544817 | Msa0705010:intron | 30.0% | |
| !!! | TTTTTGAAGTGTGCAAGTTA+TGG | - | chr4_4:77544973-77544992 | Msa0705010:intron | 30.0% |
| TATGATGAATTTAACTCAGC+TGG | - | chr4_4:77545030-77545049 | Msa0705010:intron | 30.0% | |
| !!! | CTTTACTGTGATTTTTTAGC+GGG | - | chr4_4:77545127-77545146 | Msa0705010:intron | 30.0% |
| !!! | TTTACTGTGATTTTTTAGCG+GGG | - | chr4_4:77545128-77545147 | Msa0705010:intron | 30.0% |
| ATAAATGTACTCTACACACT+CGG | + | chr4_4:77545373-77545392 | None:intergenic | 30.0% | |
| AGTACAATCAATTAAGCCTA+AGG | + | chr4_4:77546351-77546370 | None:intergenic | 30.0% | |
| TAAACGATGAATAGTGTGTT+TGG | - | chr4_4:77546419-77546438 | Msa0705010:intron | 30.0% | |
| TAGAGAGAATCATAAAGTAG+GGG | + | chr4_4:77546591-77546610 | None:intergenic | 30.0% | |
| ! | TGATATTTTCTCATTCTTGC+AGG | - | chr4_4:77546647-77546666 | Msa0705010:CDS | 30.0% |
| TTAGTTCACCTTATCGTTAA+AGG | - | chr4_4:77546686-77546705 | Msa0705010:CDS | 30.0% | |
| AGGTAAGCATTTCACATTAT+AGG | - | chr4_4:77546759-77546778 | Msa0705010:CDS | 30.0% | |
| GGTAAGCATTTCACATTATA+GGG | - | chr4_4:77546760-77546779 | Msa0705010:CDS | 30.0% | |
| AGATTTCTTTGTTGAACTGT+GGG | - | chr4_4:77546910-77546929 | Msa0705010:CDS | 30.0% | |
| TCAGTGAATAAAAGAGAGAT+CGG | + | chr4_4:77546967-77546986 | None:intergenic | 30.0% | |
| ATGTTTAGATTTGAAGGAAG+TGG | - | chr4_4:77547038-77547057 | Msa0705010:intron | 30.0% | |
| ATTGTTTGAACTTCATTTGC+AGG | - | chr4_4:77547063-77547082 | Msa0705010:intron | 30.0% | |
| CCAATAACAATATATGGAAC+AGG | + | chr4_4:77547213-77547232 | None:intergenic | 30.0% | |
| CCTGTTCCATATATTGTTAT+TGG | - | chr4_4:77547210-77547229 | Msa0705010:intron | 30.0% | |
| AGTGACACAAAATTTAGTTG+AGG | + | chr4_4:77547400-77547419 | None:intergenic | 30.0% | |
| ! | ATCATCTAAAGCATAGAAAG+TGG | + | chr4_4:77547440-77547459 | None:intergenic | 30.0% |
| !! | TTTGTTCTGTACTTTAAAGC+TGG | - | chr4_4:77547556-77547575 | Msa0705010:intron | 30.0% |
| AGAGTCAGATTAGTAAAAAC+AGG | + | chr4_4:77547729-77547748 | None:intergenic | 30.0% | |
| ACAAATAGTTAAATGCCAAG+TGG | + | chr4_4:77547761-77547780 | None:intergenic | 30.0% | |
| GTAAAGCAGATCATTTCTAT+GGG | + | chr4_4:77547853-77547872 | None:intergenic | 30.0% | |
| AGTAAAGCAGATCATTTCTA+TGG | + | chr4_4:77547854-77547873 | None:intergenic | 30.0% | |
| CAAATGTGTCTATACTCAAA+GGG | + | chr4_4:77548175-77548194 | None:intergenic | 30.0% | |
| TCAAATGTGTCTATACTCAA+AGG | + | chr4_4:77548176-77548195 | None:intergenic | 30.0% | |
| ! | TCTTAAGGGGTCTTATAAAT+AGG | - | chr4_4:77548270-77548289 | Msa0705010:intron | 30.0% |
| ! | CTTAAGGGGTCTTATAAATA+GGG | - | chr4_4:77548271-77548290 | Msa0705010:intron | 30.0% |
| AAACATTGAAGAAACACAGA+TGG | + | chr4_4:77548425-77548444 | None:intergenic | 30.0% | |
| CTACTTCTAATCTAGATAGT+TGG | + | chr4_4:77548495-77548514 | None:intergenic | 30.0% | |
| TTCTTTATAGCCACTCATTA+TGG | - | chr4_4:77548642-77548661 | Msa0705010:intron | 30.0% | |
| ATAAGCACAACTGATACTTT+AGG | + | chr4_4:77548788-77548807 | None:intergenic | 30.0% | |
| AAAAGAAGCAAGGTATGATA+AGG | - | chr4_4:77548953-77548972 | Msa0705010:intron | 30.0% | |
| TCTTCTCCTAATCAACTAAA+AGG | + | chr4_4:77549085-77549104 | None:intergenic | 30.0% | |
| TAGATGAAATATCTTCTCAG+CGG | - | chr4_4:77549172-77549191 | Msa0705010:intron | 30.0% | |
| ! | GATGATCAGTCTTATAATAC+AGG | - | chr4_4:77549216-77549235 | Msa0705010:intron | 30.0% |
| AACCAGACAAAGAAAATCTA+GGG | + | chr4_4:77549438-77549457 | None:intergenic | 30.0% | |
| !!! | GATCTTTGTATTTTGGTAAC+TGG | - | chr4_4:77549512-77549531 | Msa0705010:five_prime_UTR | 30.0% |
| CACTGATATGTATTCTTACA+TGG | - | chr4_4:77549547-77549566 | Msa0705010:five_prime_UTR | 30.0% | |
| ! | ACAATTTACGGTTTGGATCA+AGG | + | chr4_4:77544209-77544228 | None:intergenic | 35.0% |
| TCAGTTGAAGGAGATTGATT+TGG | + | chr4_4:77544271-77544290 | None:intergenic | 35.0% | |
| !!! | GTTTTAATTCTCACGTGACA+TGG | - | chr4_4:77544385-77544404 | Msa0705010:CDS | 35.0% |
| TGGTGGTTGAATCTATTTGA+CGG | - | chr4_4:77544425-77544444 | Msa0705010:CDS | 35.0% | |
| AGGGAGAATAAGGAACATAA+CGG | - | chr4_4:77544580-77544599 | Msa0705010:intron | 35.0% | |
| TCAAGACTTGAGTGAATCAT+AGG | - | chr4_4:77544773-77544792 | Msa0705010:CDS | 35.0% | |
| TAAAGCACAAAGCTCTTCTA+AGG | + | chr4_4:77545106-77545125 | None:intergenic | 35.0% | |
| !! | AAGTCAAGTTGATTGAGTGA+AGG | - | chr4_4:77545180-77545199 | Msa0705010:intron | 35.0% |
| !! | CTGCTTTAGAACTTAGAAGT+AGG | - | chr4_4:77545398-77545417 | Msa0705010:intron | 35.0% |
| AGAACTTAGAAGTAGGAAGA+TGG | - | chr4_4:77545405-77545424 | Msa0705010:intron | 35.0% | |
| CTGTAATGCAAACGACTATA+TGG | - | chr4_4:77545609-77545628 | Msa0705010:intron | 35.0% | |
| TTCCTCTATGACAAATCTGT+GGG | + | chr4_4:77545911-77545930 | None:intergenic | 35.0% | |
| ATTCCTCTATGACAAATCTG+TGG | + | chr4_4:77545912-77545931 | None:intergenic | 35.0% | |
| AGTATTTCGTCAAATCAAGC+AGG | + | chr4_4:77546046-77546065 | None:intergenic | 35.0% | |
| TATGACGTGAATCAGGAAAA+GGG | + | chr4_4:77546179-77546198 | None:intergenic | 35.0% | |
| TTATGACGTGAATCAGGAAA+AGG | + | chr4_4:77546180-77546199 | None:intergenic | 35.0% | |
| ! | GAATAGTGTGTTTGGAATTG+CGG | - | chr4_4:77546427-77546446 | Msa0705010:intron | 35.0% |
| ! | TACTATTTGTAGCTTGTGGT+TGG | + | chr4_4:77546475-77546494 | None:intergenic | 35.0% |
| AAGCTACTATTTGTAGCTTG+TGG | + | chr4_4:77546479-77546498 | None:intergenic | 35.0% | |
| AGAGAGAATCATAAAGTAGG+GGG | + | chr4_4:77546590-77546609 | None:intergenic | 35.0% | |
| AACGATAAGGTGAACTAAAG+AGG | + | chr4_4:77546684-77546703 | None:intergenic | 35.0% | |
| TACTGTACAACCAATTGTCT+GGG | + | chr4_4:77546732-77546751 | None:intergenic | 35.0% | |
| AATTTCCATAAGTAGTGTGC+TGG | + | chr4_4:77546850-77546869 | None:intergenic | 35.0% | |
| CACACTACTTATGGAAATTC+TGG | - | chr4_4:77546851-77546870 | Msa0705010:intron | 35.0% | |
| GAGATTTCTTTGTTGAACTG+TGG | - | chr4_4:77546909-77546928 | Msa0705010:CDS | 35.0% | |
| AGCTGATATTGTTGCAAAAG+AGG | - | chr4_4:77547239-77547258 | Msa0705010:intron | 35.0% | |
| GCTGATATTGTTGCAAAAGA+GGG | - | chr4_4:77547240-77547259 | Msa0705010:intron | 35.0% | |
| AACATCGGAATTATTCATGG+AGG | + | chr4_4:77547471-77547490 | None:intergenic | 35.0% | |
| CCATTTCAGATACAGTGATA+GGG | + | chr4_4:77547630-77547649 | None:intergenic | 35.0% | |
| ACCATTTCAGATACAGTGAT+AGG | + | chr4_4:77547631-77547650 | None:intergenic | 35.0% | |
| GTACCTTAGAGTTTAGTTGA+TGG | - | chr4_4:77547649-77547668 | Msa0705010:intron | 35.0% | |
| CATCCATCAACTAAACTCTA+AGG | + | chr4_4:77547655-77547674 | None:intergenic | 35.0% | |
| !! | AGTTTAGTTGATGGATGAAG+AGG | - | chr4_4:77547658-77547677 | Msa0705010:intron | 35.0% |
| GTCAGATTAGTAAAAACAGG+AGG | + | chr4_4:77547726-77547745 | None:intergenic | 35.0% | |
| ! | CTTTTCAGTCCAAGACAAAT+TGG | - | chr4_4:77548202-77548221 | Msa0705010:intron | 35.0% |
| ACACTGTTTATTCGATCACA+TGG | + | chr4_4:77548372-77548391 | None:intergenic | 35.0% | |
| CTACTATAAGAAGAATGGAC+TGG | + | chr4_4:77548900-77548919 | None:intergenic | 35.0% | |
| !!! | TTTTTTTGTCGGATGACTAC+AGG | - | chr4_4:77548926-77548945 | Msa0705010:intron | 35.0% |
| ! | TGTGATTAAGTTTTTCCGCA+TGG | - | chr4_4:77548980-77548999 | Msa0705010:intron | 35.0% |
| !! | ACCTCTCCTTTTAGTTGATT+AGG | - | chr4_4:77549076-77549095 | Msa0705010:intron | 35.0% |
| TCCTAATCAACTAAAAGGAG+AGG | + | chr4_4:77549080-77549099 | None:intergenic | 35.0% | |
| ! | GGAAGCATGTTATACTTGTA+CGG | + | chr4_4:77549331-77549350 | None:intergenic | 35.0% |
| ! | TACCCTAGATTTTCTTTGTC+TGG | - | chr4_4:77549433-77549452 | Msa0705010:five_prime_UTR | 35.0% |
| GAACCAGACAAAGAAAATCT+AGG | + | chr4_4:77549439-77549458 | None:intergenic | 35.0% | |
| AAATGAATGAATCAGTGGAC+AGG | + | chr4_4:77549614-77549633 | None:intergenic | 35.0% | |
| GTGCTACATGTTCAAAGTTT+GGG | - | chr4_4:77549661-77549680 | Msa0705010:five_prime_UTR | 35.0% | |
| TGCTACATGTTCAAAGTTTG+GGG | - | chr4_4:77549662-77549681 | Msa0705010:five_prime_UTR | 35.0% | |
| ! | ATTTACGGTTTGGATCAAGG+TGG | + | chr4_4:77544206-77544225 | None:intergenic | 40.0% |
| ! | GAAATCAAGAGCTTTAGCGA+TGG | + | chr4_4:77544317-77544336 | None:intergenic | 40.0% |
| TCAGAGAAGATGCGTTACTA+TGG | - | chr4_4:77544361-77544380 | Msa0705010:three_prime_UTR | 40.0% | |
| CAGAGAAGATGCGTTACTAT+GGG | - | chr4_4:77544362-77544381 | Msa0705010:three_prime_UTR | 40.0% | |
| AGAGAAGATGCGTTACTATG+GGG | - | chr4_4:77544363-77544382 | Msa0705010:three_prime_UTR | 40.0% | |
| !! | TTAGTTAGTTCTGGAGGGTT+TGG | - | chr4_4:77544531-77544550 | Msa0705010:CDS | 40.0% |
| ! | TTTGGAAACCATGTTCTGGA+GGG | - | chr4_4:77544549-77544568 | Msa0705010:CDS | 40.0% |
| GAGAATAAGGAACATAACGG+TGG | - | chr4_4:77544583-77544602 | Msa0705010:intron | 40.0% | |
| ! | AATTTTGTCTCCTGCAGTAG+TGG | - | chr4_4:77544871-77544890 | Msa0705010:intron | 40.0% |
| GATGAATTTAACTCAGCTGG+TGG | - | chr4_4:77545033-77545052 | Msa0705010:intron | 40.0% | |
| ! | CTAAGGTAAGCTGGTTTCTA+AGG | + | chr4_4:77545089-77545108 | None:intergenic | 40.0% |
| !! | AAAGCTCTTCTAAGGTAAGC+TGG | + | chr4_4:77545098-77545117 | None:intergenic | 40.0% |
| !! | TCAAGTTGATTGAGTGAAGG+AGG | - | chr4_4:77545183-77545202 | Msa0705010:intron | 40.0% |
| GCACTAGTACAAAATCCCAA+TGG | + | chr4_4:77545230-77545249 | None:intergenic | 40.0% | |
| CGGCATGACACCATATATTA+CGG | + | chr4_4:77545353-77545372 | None:intergenic | 40.0% | |
| ACTTAGAAGTAGGAAGATGG+TGG | - | chr4_4:77545408-77545427 | Msa0705010:intron | 40.0% | |
| GTATATGGGTGTTTGACTCT+AGG | - | chr4_4:77545567-77545586 | Msa0705010:intron | 40.0% | |
| TTCCCACAGATTTGTCATAG+AGG | - | chr4_4:77545906-77545925 | Msa0705010:intron | 40.0% | |
| ! | CCATCTGACTTTCTGTTTTC+CGG | + | chr4_4:77546240-77546259 | None:intergenic | 40.0% |
| CCTAAGGATAGACAACTTGA+GGG | + | chr4_4:77546335-77546354 | None:intergenic | 40.0% | |
| ! | AAGGGCATAAGTTTGGACTT+GGG | + | chr4_4:77546375-77546394 | None:intergenic | 40.0% |
| GAGAGAATCATAAAGTAGGG+GGG | + | chr4_4:77546589-77546608 | None:intergenic | 40.0% | |
| TTTCTCATTCTTGCAGGTGT+TGG | - | chr4_4:77546653-77546672 | Msa0705010:CDS | 40.0% | |
| TTCTCATTCTTGCAGGTGTT+GGG | - | chr4_4:77546654-77546673 | Msa0705010:CDS | 40.0% | |
| TGGGAGAACCTTTAACGATA+AGG | + | chr4_4:77546697-77546716 | None:intergenic | 40.0% | |
| CTACTGTACAACCAATTGTC+TGG | + | chr4_4:77546733-77546752 | None:intergenic | 40.0% | |
| TGGTTGTACAGTAGATGTGA+AGG | - | chr4_4:77546739-77546758 | Msa0705010:CDS | 40.0% | |
| GTAGTGTGCTGGAAATGAAA+CGG | + | chr4_4:77546839-77546858 | None:intergenic | 40.0% | |
| CATTTCCAGCACACTACTTA+TGG | - | chr4_4:77546842-77546861 | Msa0705010:intron | 40.0% | |
| !! | TTCTGTACTTTAAAGCTGGC+TGG | - | chr4_4:77547560-77547579 | Msa0705010:intron | 40.0% |
| CCCTATCACTGTATCTGAAA+TGG | - | chr4_4:77547627-77547646 | Msa0705010:intron | 40.0% | |
| AGTAAAAACAGGAGGCAACA+TGG | + | chr4_4:77547718-77547737 | None:intergenic | 40.0% | |
| GACTCTCTACTATATCCACT+TGG | - | chr4_4:77547743-77547762 | Msa0705010:intron | 40.0% | |
| TCTGCTTTACTTGACTGATG+AGG | - | chr4_4:77547863-77547882 | Msa0705010:intron | 40.0% | |
| ATGGAATAGGTTACTCTGTC+AGG | - | chr4_4:77548006-77548025 | Msa0705010:intron | 40.0% | |
| !! | CATATGAGAGAAGTGCCTAA+GGG | + | chr4_4:77548046-77548065 | None:intergenic | 40.0% |
| !! | ACATATGAGAGAAGTGCCTA+AGG | + | chr4_4:77548047-77548066 | None:intergenic | 40.0% |
| ! | AGGGGTCTTATAAATAGGGA+CGG | - | chr4_4:77548275-77548294 | Msa0705010:intron | 40.0% |
| CACAGATGGTTGAAAATCAC+AGG | + | chr4_4:77548411-77548430 | None:intergenic | 40.0% | |
| AGAAGCAAGGTATGATAAGG+AGG | - | chr4_4:77548956-77548975 | Msa0705010:intron | 40.0% | |
| CAAAGACATTACTGACCATG+CGG | + | chr4_4:77548998-77549017 | None:intergenic | 40.0% | |
| ATGAAATACCTGCACCTACA+TGG | - | chr4_4:77549115-77549134 | Msa0705010:intron | 40.0% | |
| CTATCCTCAACAACCAGTTT+CGG | - | chr4_4:77549393-77549412 | Msa0705010:five_prime_UTR | 40.0% | |
| !! | TTTTAGAGGCTTTCTCAGTG+CGG | - | chr4_4:77549633-77549652 | Msa0705010:five_prime_UTR | 40.0% |
| ! | GGTGCTACATGTTCAAAGTT+TGG | - | chr4_4:77549660-77549679 | Msa0705010:five_prime_UTR | 40.0% |
| ATGTGGCGTTGTTCAGTTGA+AGG | + | chr4_4:77544283-77544302 | None:intergenic | 45.0% | |
| CTTTAGCGATGGATCTGAAG+AGG | + | chr4_4:77544306-77544325 | None:intergenic | 45.0% | |
| AGGGTTTGGAAACCATGTTC+TGG | - | chr4_4:77544545-77544564 | Msa0705010:CDS | 45.0% | |
| GTTTGGAAACCATGTTCTGG+AGG | - | chr4_4:77544548-77544567 | Msa0705010:CDS | 45.0% | |
| ACCAAACACACTCGTTGAGA+GGG | + | chr4_4:77544688-77544707 | None:intergenic | 45.0% | |
| AACCAAACACACTCGTTGAG+AGG | + | chr4_4:77544689-77544708 | None:intergenic | 45.0% | |
| ATGCTTAGTTCCACTACTGC+AGG | + | chr4_4:77544884-77544903 | None:intergenic | 45.0% | |
| !!! | CTGTGATTTTTTAGCGGGGA+TGG | - | chr4_4:77545132-77545151 | Msa0705010:intron | 45.0% |
| !! | TTGACTTTTTCCACACGACG+CGG | + | chr4_4:77545167-77545186 | None:intergenic | 45.0% |
| GTTGATTGAGTGAAGGAGGT+TGG | - | chr4_4:77545187-77545206 | Msa0705010:intron | 45.0% | |
| TGAGTGAAGGAGGTTGGATT+TGG | - | chr4_4:77545193-77545212 | Msa0705010:intron | 45.0% | |
| TGCCACTGAAACTCGTAGAT+CGG | - | chr4_4:77545247-77545266 | Msa0705010:intron | 45.0% | |
| CGTACTTTCGAGATCTATGC+TGG | - | chr4_4:77545480-77545499 | Msa0705010:intron | 45.0% | |
| CACACACAGCTATAAAAGCG+AGG | + | chr4_4:77545768-77545787 | None:intergenic | 45.0% | |
| CCGGAAAACAGAAAGTCAGA+TGG | - | chr4_4:77546237-77546256 | Msa0705010:intron | 45.0% | |
| TAGACAACTTGAGGGCAGTT+TGG | + | chr4_4:77546327-77546346 | None:intergenic | 45.0% | |
| ! | CCCTCAAGTTGTCTATCCTT+AGG | - | chr4_4:77546332-77546351 | Msa0705010:intron | 45.0% |
| GCCTAAGGATAGACAACTTG+AGG | + | chr4_4:77546336-77546355 | None:intergenic | 45.0% | |
| ! | GAAGGGCATAAGTTTGGACT+TGG | + | chr4_4:77546376-77546395 | None:intergenic | 45.0% |
| ! | CACATCGAAGGGCATAAGTT+TGG | + | chr4_4:77546382-77546401 | None:intergenic | 45.0% |
| GTTGACTGATGCACATCGAA+GGG | + | chr4_4:77546393-77546412 | None:intergenic | 45.0% | |
| AGTTGACTGATGCACATCGA+AGG | + | chr4_4:77546394-77546413 | None:intergenic | 45.0% | |
| GATGTGCATCAGTCAACTGT+AGG | - | chr4_4:77546396-77546415 | Msa0705010:intron | 45.0% | |
| GAATCATAAAGTAGGGGGGA+GGG | + | chr4_4:77546585-77546604 | None:intergenic | 45.0% | |
| AGAATCATAAAGTAGGGGGG+AGG | + | chr4_4:77546586-77546605 | None:intergenic | 45.0% | |
| GTACAACCAATTGTCTGGGA+AGG | + | chr4_4:77546728-77546747 | None:intergenic | 45.0% | |
| AGCTCTTCAAGTAGCCTCAA+AGG | - | chr4_4:77546875-77546894 | Msa0705010:intron | 45.0% | |
| CTCTCTCAGAATCACCTTTG+AGG | + | chr4_4:77546892-77546911 | None:intergenic | 45.0% | |
| GTTGAACTGTGGGATGTATC+AGG | - | chr4_4:77546920-77546939 | Msa0705010:CDS | 45.0% | |
| GAAGACGAGTTTGCAGAAGT+GGG | - | chr4_4:77547122-77547141 | Msa0705010:intron | 45.0% | |
| ! | TGGGACATTTTCAGCTCCTT+TGG | - | chr4_4:77547164-77547183 | Msa0705010:CDS | 45.0% |
| ! | GGGACATTTTCAGCTCCTTT+GGG | - | chr4_4:77547165-77547184 | Msa0705010:CDS | 45.0% |
| !!! | TTTTCAGCTCCTTTGGGATC+TGG | - | chr4_4:77547171-77547190 | Msa0705010:CDS | 45.0% |
| TTGTTGATGTTGCACGCCAA+TGG | - | chr4_4:77547286-77547305 | Msa0705010:intron | 45.0% | |
| TGTTGATGTTGCACGCCAAT+GGG | - | chr4_4:77547287-77547306 | Msa0705010:intron | 45.0% | |
| ! | TTGAGGCGCTTACTGCAATA+AGG | + | chr4_4:77547383-77547402 | None:intergenic | 45.0% |
| GTCCTATGTAGAAGACCCTT+AGG | - | chr4_4:77548028-77548047 | Msa0705010:intron | 45.0% | |
| TGCCTAAGGGTCTTCTACAT+AGG | + | chr4_4:77548033-77548052 | None:intergenic | 45.0% | |
| TACAGGCAGCAAAAGAAGCA+AGG | - | chr4_4:77548943-77548962 | Msa0705010:intron | 45.0% | |
| GGTTGTTGAGGATAGAGTGT+GGG | + | chr4_4:77549388-77549407 | None:intergenic | 45.0% | |
| TGGTTGTTGAGGATAGAGTG+TGG | + | chr4_4:77549389-77549408 | None:intergenic | 45.0% | |
| TAGCTTTCAGAGACCGAAAC+TGG | + | chr4_4:77549409-77549428 | None:intergenic | 45.0% | |
| ATCAGTGGACAGGTTACAAG+TGG | + | chr4_4:77549604-77549623 | None:intergenic | 45.0% | |
| !! | AATTATAAATATATCAAATT+CGG | + | chr4_4:77544919-77544938 | None:intergenic | 5.0% |
| !!! | TTTGATATATTTATAATTTT+TGG | - | chr4_4:77544921-77544940 | Msa0705010:CDS | 5.0% |
| !!! | TATTTTTATAAATTAACTTT+GGG | - | chr4_4:77545807-77545826 | Msa0705010:intron | 5.0% |
| !! | ATTAATTATATAATAAATAC+CGG | - | chr4_4:77546218-77546237 | Msa0705010:intron | 5.0% |
| !! | TAAATTTAAACAAAAAATAA+AGG | + | chr4_4:77549031-77549050 | None:intergenic | 5.0% |
| !!! | TTATTTTTTGTTTAAATTTA+TGG | - | chr4_4:77549031-77549050 | Msa0705010:intron | 5.0% |
| !!! | TATTTTTTGTTTAAATTTAT+GGG | - | chr4_4:77549032-77549051 | Msa0705010:intron | 5.0% |
| CGATGGATCTGAAGAGGATG+TGG | + | chr4_4:77544300-77544319 | None:intergenic | 50.0% | |
| GGAACGTGAGAGGGAGAATA+AGG | - | chr4_4:77544570-77544589 | Msa0705010:intron | 50.0% | |
| ! | CATAACGGTGGAGTGCTTTG+TGG | - | chr4_4:77544595-77544614 | Msa0705010:intron | 50.0% |
| ! | CAAGTCAGAGTGCTCGTTGT+TGG | - | chr4_4:77544619-77544638 | Msa0705010:intron | 50.0% |
| TCCCTCTCAACGAGTGTGTT+TGG | - | chr4_4:77544684-77544703 | Msa0705010:CDS | 50.0% | |
| !! | TGACTTTTTCCACACGACGC+GGG | + | chr4_4:77545166-77545185 | None:intergenic | 50.0% |
| GCCACTGAAACTCGTAGATC+GGG | - | chr4_4:77545248-77545267 | Msa0705010:intron | 50.0% | |
| TCCCGATCTACGAGTTTCAG+TGG | + | chr4_4:77545252-77545271 | None:intergenic | 50.0% | |
| CTGAAACTCGTAGATCGGGA+CGG | - | chr4_4:77545252-77545271 | Msa0705010:intron | 50.0% | |
| GTGTGCTGGAAATGAAACGG+AGG | + | chr4_4:77546836-77546855 | None:intergenic | 50.0% | |
| CGAAGACGAGTTTGCAGAAG+TGG | - | chr4_4:77547121-77547140 | Msa0705010:intron | 50.0% | |
| CAGCTGAGATTGCTGCAACT+GGG | - | chr4_4:77547145-77547164 | Msa0705010:CDS | 50.0% | |
| ATGGAACAGGAAGACCACCA+GGG | + | chr4_4:77547200-77547219 | None:intergenic | 50.0% | |
| TATGGAACAGGAAGACCACC+AGG | + | chr4_4:77547201-77547220 | None:intergenic | 50.0% | |
| CCAGGAAAACTCTCAGTCAG+TGG | + | chr4_4:77547351-77547370 | None:intergenic | 50.0% | |
| !! | CCACTGACTGAGAGTTTTCC+TGG | - | chr4_4:77547348-77547367 | Msa0705010:intron | 50.0% |
| ! | CTGACTGAGAGTTTTCCTGG+TGG | - | chr4_4:77547351-77547370 | Msa0705010:intron | 50.0% |
| ! | ACTGAGAGTTTTCCTGGTGG+TGG | - | chr4_4:77547354-77547373 | Msa0705010:intron | 50.0% |
| GGTGAAGGAATGGACCATGT+AGG | + | chr4_4:77549132-77549151 | None:intergenic | 50.0% | |
| TAACATGCTTCCCCCACTTC+CGG | - | chr4_4:77549339-77549358 | Msa0705010:five_prime_UTR | 50.0% | |
| GGAGTTAGATTGCGTTGAGC+CGG | + | chr4_4:77549361-77549380 | None:intergenic | 50.0% | |
| TGTTGAGGATAGAGTGTGGG+TGG | + | chr4_4:77549385-77549404 | None:intergenic | 50.0% | |
| GAGACCGAAACTGGTTGTTG+AGG | + | chr4_4:77549400-77549419 | None:intergenic | 50.0% | |
| CTCACGTTCCCTCCAGAACA+TGG | + | chr4_4:77544560-77544579 | None:intergenic | 55.0% | |
| !! | TGTTCTGGAGGGAACGTGAG+AGG | - | chr4_4:77544560-77544579 | Msa0705010:CDS | 55.0% |
| !! | GTTCTGGAGGGAACGTGAGA+GGG | - | chr4_4:77544561-77544580 | Msa0705010:CDS | 55.0% |
| !! | GTGCTCGTTGTTGGTGACTC+AGG | - | chr4_4:77544628-77544647 | Msa0705010:intron | 55.0% |
| GAAAATTTCCCCGCGTCGTG+TGG | - | chr4_4:77545154-77545173 | Msa0705010:intron | 55.0% | |
| !! | GACTTTTTCCACACGACGCG+GGG | + | chr4_4:77545165-77545184 | None:intergenic | 55.0% |
| AGGGCAAGCAGTCACATGCT+CGG | + | chr4_4:77546566-77546585 | None:intergenic | 55.0% | |
| GTCTGGGAAGGACGAGCAAT+GGG | + | chr4_4:77546716-77546735 | None:intergenic | 55.0% | |
| TGTCTGGGAAGGACGAGCAA+TGG | + | chr4_4:77546717-77546736 | None:intergenic | 55.0% | |
| GCTCGTCCTTCCCAGACAAT+TGG | - | chr4_4:77546719-77546738 | Msa0705010:CDS | 55.0% | |
| GCAGCTGAGATTGCTGCAAC+TGG | - | chr4_4:77547144-77547163 | Msa0705010:CDS | 55.0% | |
| !! | TCAGCTCCTTTGGGATCTGG+CGG | - | chr4_4:77547174-77547193 | Msa0705010:CDS | 55.0% |
| ! | GTTGCAAAAGAGGGTGCGAG+AGG | - | chr4_4:77547249-77547268 | Msa0705010:intron | 55.0% |
| AACCCTGCTTCTCGACCCAT+TGG | + | chr4_4:77547305-77547324 | None:intergenic | 55.0% | |
| !!! | GAGAGTTTTCCTGGTGGTGG+AGG | - | chr4_4:77547357-77547376 | Msa0705010:intron | 55.0% |
| GGAATGGACCATGTAGGTGC+AGG | + | chr4_4:77549126-77549145 | None:intergenic | 55.0% | |
| ATTGCGTTGAGCCGGAAGTG+GGG | + | chr4_4:77549353-77549372 | None:intergenic | 55.0% | |
| GATTGCGTTGAGCCGGAAGT+GGG | + | chr4_4:77549354-77549373 | None:intergenic | 55.0% | |
| AGATTGCGTTGAGCCGGAAG+TGG | + | chr4_4:77549355-77549374 | None:intergenic | 55.0% | |
| TGAGGATAGAGTGTGGGTGG+TGG | + | chr4_4:77549382-77549401 | None:intergenic | 55.0% | |
| AGGCTTTCTCAGTGCGGAGA+AGG | - | chr4_4:77549639-77549658 | Msa0705010:five_prime_UTR | 55.0% | |
| GGAGCTGAGCGAAGCTAGTG+TGG | - | chr4_4:77545699-77545718 | Msa0705010:intron | 60.0% | |
| ACGCCAATGGGTCGAGAAGC+AGG | - | chr4_4:77547299-77547318 | Msa0705010:intron | 60.0% | |
| CGCCAATGGGTCGAGAAGCA+GGG | - | chr4_4:77547300-77547319 | Msa0705010:intron | 60.0% | |
| ! | GGGTTTGCTTCCATCCAGCG+AGG | - | chr4_4:77547320-77547339 | Msa0705010:intron | 60.0% |
| AGTGGAAGCTCCTCGCTGGA+TGG | + | chr4_4:77547333-77547352 | None:intergenic | 60.0% | |
| AGTCAGTGGAAGCTCCTCGC+TGG | + | chr4_4:77547337-77547356 | None:intergenic | 60.0% | |
| GCAATAAGGCCTCCACCACC+AGG | + | chr4_4:77547369-77547388 | None:intergenic | 60.0% | |
| TTGCGTTGAGCCGGAAGTGG+GGG | + | chr4_4:77549352-77549371 | None:intergenic | 60.0% | |
| ! | GAGGGTGCGAGAGGAAGCAG+CGG | - | chr4_4:77547258-77547277 | Msa0705010:intron | 65.0% |
| AGGGTGCGAGAGGAAGCAGC+GGG | - | chr4_4:77547259-77547278 | Msa0705010:intron | 65.0% | |
| CCAGGGCCGCCAGATCCCAA+AGG | + | chr4_4:77547183-77547202 | None:intergenic | 70.0% | |
| !! | CCTTTGGGATCTGGCGGCCC+TGG | - | chr4_4:77547180-77547199 | Msa0705010:CDS | 70.0% |
| TTGGGATCTGGCGGCCCTGG+TGG | - | chr4_4:77547183-77547202 | Msa0705010:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 77544155 | 77549740 | 77544155 | ID=Msa0705010;Name=Msa0705010 |
| chr4_4 | mRNA | 77544155 | 77549740 | 77544155 | ID=Msa0705010-mRNA-1;Parent=Msa0705010;Name=Msa0705010-mRNA-1;_AED=0.06;_eAED=0.06;_QI=404|1|1|1|1|1|7|230|342 |
| chr4_4 | exon | 77544155 | 77544580 | 77544155 | ID=Msa0705010-mRNA-1:exon:24644;Parent=Msa0705010-mRNA-1 |
| chr4_4 | exon | 77544657 | 77544805 | 77544657 | ID=Msa0705010-mRNA-1:exon:24643;Parent=Msa0705010-mRNA-1 |
| chr4_4 | exon | 77544894 | 77544947 | 77544894 | ID=Msa0705010-mRNA-1:exon:24642;Parent=Msa0705010-mRNA-1 |
| chr4_4 | exon | 77546506 | 77546810 | 77546506 | ID=Msa0705010-mRNA-1:exon:24641;Parent=Msa0705010-mRNA-1 |
| chr4_4 | exon | 77546903 | 77547044 | 77546903 | ID=Msa0705010-mRNA-1:exon:24640;Parent=Msa0705010-mRNA-1 |
| chr4_4 | exon | 77547135 | 77547226 | 77547135 | ID=Msa0705010-mRNA-1:exon:24639;Parent=Msa0705010-mRNA-1 |
| chr4_4 | exon | 77549246 | 77549740 | 77549246 | ID=Msa0705010-mRNA-1:exon:24638;Parent=Msa0705010-mRNA-1 |
| chr4_4 | five_prime_UTR | 77549337 | 77549740 | 77549337 | ID=Msa0705010-mRNA-1:five_prime_utr;Parent=Msa0705010-mRNA-1 |
| chr4_4 | CDS | 77549246 | 77549336 | 77549246 | ID=Msa0705010-mRNA-1:cds;Parent=Msa0705010-mRNA-1 |
| chr4_4 | CDS | 77547135 | 77547226 | 77547135 | ID=Msa0705010-mRNA-1:cds;Parent=Msa0705010-mRNA-1 |
| chr4_4 | CDS | 77546903 | 77547044 | 77546903 | ID=Msa0705010-mRNA-1:cds;Parent=Msa0705010-mRNA-1 |
| chr4_4 | CDS | 77546506 | 77546810 | 77546506 | ID=Msa0705010-mRNA-1:cds;Parent=Msa0705010-mRNA-1 |
| chr4_4 | CDS | 77544894 | 77544947 | 77544894 | ID=Msa0705010-mRNA-1:cds;Parent=Msa0705010-mRNA-1 |
| chr4_4 | CDS | 77544657 | 77544805 | 77544657 | ID=Msa0705010-mRNA-1:cds;Parent=Msa0705010-mRNA-1 |
| chr4_4 | CDS | 77544385 | 77544580 | 77544385 | ID=Msa0705010-mRNA-1:cds;Parent=Msa0705010-mRNA-1 |
| chr4_4 | three_prime_UTR | 77544155 | 77544384 | 77544155 | ID=Msa0705010-mRNA-1:three_prime_utr;Parent=Msa0705010-mRNA-1 |
| Gene Sequence |
| Protein sequence |
