Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336540 | XP_003597029.1 | 91.241 | 274 | 7 | 1 | 1 | 257 | 1 | 274 | 2.54e-177 | 499 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336540 | sp|Q9LSX7|PEX22_ARATH | 61.957 | 276 | 69 | 4 | 14 | 257 | 11 | 282 | 3.13e-102 | 301 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000910 | Msa0336540 | 0.832355 | 9.911471e-56 | -8.615850e-47 |
| Msa0015050 | Msa0336540 | 0.805017 | 1.635164e-49 | -8.615850e-47 |
| Msa0017730 | Msa0336540 | 0.818073 | 2.371219e-52 | -8.615850e-47 |
| Msa0029630 | Msa0336540 | 0.816542 | 5.240025e-52 | -8.615850e-47 |
| Msa0030300 | Msa0336540 | 0.808792 | 2.602510e-50 | -8.615850e-47 |
| Msa0091730 | Msa0336540 | 0.801486 | 8.803761e-49 | -8.615850e-47 |
| Msa0093010 | Msa0336540 | 0.800313 | 1.528131e-48 | -8.615850e-47 |
| Msa0122530 | Msa0336540 | 0.826038 | 3.378491e-54 | -8.615850e-47 |
| Msa0125450 | Msa0336540 | 0.813832 | 2.096213e-51 | -8.615850e-47 |
| Msa0125540 | Msa0336540 | 0.807066 | 6.059564e-50 | -8.615850e-47 |
| Msa0144430 | Msa0336540 | 0.803557 | 3.292753e-49 | -8.615850e-47 |
| Msa0147980 | Msa0336540 | 0.810802 | 9.617368e-51 | -8.615850e-47 |
| Msa0149440 | Msa0336540 | 0.809576 | 1.767020e-50 | -8.615850e-47 |
| Msa0163510 | Msa0336540 | 0.806000 | 1.017467e-49 | -8.615850e-47 |
| Msa0190870 | Msa0336540 | 0.979055 | 3.894342e-147 | -8.615850e-47 |
| Msa0202490 | Msa0336540 | 0.846325 | 2.331877e-59 | -8.615850e-47 |
| Msa0215990 | Msa0336540 | 0.856884 | 2.378353e-62 | -8.615850e-47 |
| Msa0217670 | Msa0336540 | 0.861848 | 7.690076e-64 | -8.615850e-47 |
| Msa0230820 | Msa0336540 | 0.850832 | 1.315371e-60 | -8.615850e-47 |
| Msa0230890 | Msa0336540 | 0.801309 | 9.567192e-49 | -8.615850e-47 |
| Msa0237300 | Msa0336540 | 0.829691 | 4.467239e-55 | -8.615850e-47 |
| Msa0245430 | Msa0336540 | 0.801345 | 9.409448e-49 | -8.615850e-47 |
| Msa0245580 | Msa0336540 | 0.824244 | 8.965204e-54 | -8.615850e-47 |
| Msa0256140 | Msa0336540 | 0.834403 | 3.058797e-56 | -8.615850e-47 |
| Msa0257490 | Msa0336540 | 0.818099 | 2.338790e-52 | -8.615850e-47 |
| Msa0261010 | Msa0336540 | 0.922925 | 5.208961e-89 | -8.615850e-47 |
| Msa0269470 | Msa0336540 | 0.800385 | 1.477555e-48 | -8.615850e-47 |
| Msa0274720 | Msa0336540 | 0.830327 | 3.125664e-55 | -8.615850e-47 |
| Msa0284180 | Msa0336540 | 0.859827 | 3.158018e-63 | -8.615850e-47 |
| Msa0288010 | Msa0336540 | -0.804467 | 2.130516e-49 | -8.615850e-47 |
| Msa0296790 | Msa0336540 | 0.824428 | 8.115719e-54 | -8.615850e-47 |
| Msa0315520 | Msa0336540 | 0.837701 | 4.449321e-57 | -8.615850e-47 |
| Msa0336450 | Msa0336540 | 0.973179 | 5.432772e-136 | -8.615850e-47 |
| Msa0336540 | Msa0377820 | 0.871692 | 5.632515e-67 | -8.615850e-47 |
| Msa0336540 | Msa0385500 | 0.839292 | 1.728999e-57 | -8.615850e-47 |
| Msa0336540 | Msa0426580 | 0.882310 | 1.159630e-70 | -8.615850e-47 |
| Msa0336540 | Msa0439960 | 0.836720 | 7.930081e-57 | -8.615850e-47 |
| Msa0336540 | Msa0471960 | 0.811103 | 8.276926e-51 | -8.615850e-47 |
| Msa0336540 | Msa0472930 | 0.871215 | 8.095069e-67 | -8.615850e-47 |
| Msa0336540 | Msa0517590 | 0.864897 | 8.735945e-65 | -8.615850e-47 |
| Msa0336540 | Msa0527540 | 0.810338 | 1.211156e-50 | -8.615850e-47 |
| Msa0336540 | Msa0530300 | 0.814837 | 1.256954e-51 | -8.615850e-47 |
| Msa0336540 | Msa0549450 | 0.833475 | 5.222036e-56 | -8.615850e-47 |
| Msa0336540 | Msa0605510 | 0.801750 | 7.770083e-49 | -8.615850e-47 |
| Msa0336540 | Msa0610250 | 0.822612 | 2.158407e-53 | -8.615850e-47 |
| Msa0336540 | Msa0610550 | 0.830106 | 3.540535e-55 | -8.615850e-47 |
| Msa0336540 | Msa0622790 | 0.943666 | 7.973039e-103 | -8.615850e-47 |
| Msa0336540 | Msa0646420 | 0.800831 | 1.198567e-48 | -8.615850e-47 |
| Msa0336540 | Msa0646470 | 0.819312 | 1.240785e-52 | -8.615850e-47 |
| Msa0336540 | Msa0658970 | 0.828913 | 6.901905e-55 | -8.615850e-47 |
| Msa0336540 | Msa0662220 | 0.806510 | 7.943394e-50 | -8.615850e-47 |
| Msa0336540 | Msa0689440 | 0.802030 | 6.807602e-49 | -8.615850e-47 |
| Msa0336540 | Msa0693210 | 0.807501 | 4.901841e-50 | -8.615850e-47 |
| Msa0336540 | Msa0705010 | 0.845177 | 4.776834e-59 | -8.615850e-47 |
| Msa0336540 | Msa0752700 | 0.821913 | 3.135760e-53 | -8.615850e-47 |
| Msa0336540 | Msa0794970 | 0.811158 | 8.051102e-51 | -8.615850e-47 |
| Msa0336540 | Msa0825610 | 0.805753 | 1.146583e-49 | -8.615850e-47 |
| Msa0336540 | Msa0831100 | 0.818673 | 1.733366e-52 | -8.615850e-47 |
| Msa0336540 | Msa0910960 | 0.808307 | 3.303068e-50 | -8.615850e-47 |
| Msa0336540 | Msa0980540 | 0.817510 | 3.177156e-52 | -8.615850e-47 |
| Msa0336540 | Msa1007290 | 0.807760 | 4.317824e-50 | -8.615850e-47 |
| Msa0336540 | Msa1039900 | 0.814299 | 1.653251e-51 | -8.615850e-47 |
| Msa0336540 | Msa1109780 | -0.802466 | 5.537329e-49 | -8.615850e-47 |
| Msa0336540 | Msa1123350 | 0.810231 | 1.277298e-50 | -8.615850e-47 |
| Msa0336540 | Msa1128280 | 0.803036 | 4.222108e-49 | -8.615850e-47 |
| Msa0336540 | Msa1130980 | 0.818080 | 2.362366e-52 | -8.615850e-47 |
| Msa0336540 | Msa1131680 | 0.800017 | 1.755336e-48 | -8.615850e-47 |
| Msa0336540 | Msa1133590 | 0.815935 | 7.162323e-52 | -8.615850e-47 |
| Msa0336540 | Msa1165270 | 0.804830 | 1.789728e-49 | -8.615850e-47 |
| Msa0336540 | Msa1175350 | 0.828544 | 8.476360e-55 | -8.615850e-47 |
| Msa0336540 | Msa1178580 | 0.813985 | 1.940184e-51 | -8.615850e-47 |
| Msa0336540 | Msa1191930 | 0.832146 | 1.116544e-55 | -8.615850e-47 |
| Msa0336540 | Msa1206650 | 0.831204 | 1.906010e-55 | -8.615850e-47 |
| Msa0336540 | Msa1218620 | 0.805806 | 1.117618e-49 | -8.615850e-47 |
| Msa0336540 | Msa1228040 | 0.831608 | 1.515769e-55 | -8.615850e-47 |
| Msa0336540 | Msa1233850 | 0.828907 | 6.926178e-55 | -8.615850e-47 |
| Msa0336540 | Msa1235460 | 0.844987 | 5.376707e-59 | -8.615850e-47 |
| Msa0336540 | Msa1258030 | -0.804569 | 2.028668e-49 | -8.615850e-47 |
| Msa0336540 | Msa1276150 | 0.809093 | 2.243764e-50 | -8.615850e-47 |
| Msa0336540 | Msa1292020 | 0.830551 | 2.754994e-55 | -8.615850e-47 |
| Msa0336540 | Msa1298100 | 0.811482 | 6.848649e-51 | -8.615850e-47 |
| Msa0336540 | Msa1341060 | 0.825248 | 5.199226e-54 | -8.615850e-47 |
| Msa0336540 | Msa1373850 | 0.830174 | 3.407770e-55 | -8.615850e-47 |
| Msa0336540 | Msa1392980 | 0.816995 | 4.148772e-52 | -8.615850e-47 |
| Msa0336540 | Msa1418340 | 0.816381 | 5.694091e-52 | -8.615850e-47 |
| Msa0336540 | Msa1433700 | 0.833215 | 6.060541e-56 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336540 | MtrunA17_Chr2g0322911 | 91.241 | 274 | 7 | 1 | 1 | 257 | 1 | 274 | 0.0 | 499 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0336540 | AT3G21865.1 | 61.957 | 276 | 69 | 4 | 14 | 257 | 11 | 282 | 3.18e-103 | 301 |
Find 93 sgRNAs with CRISPR-Local
Find 309 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCTAACTGGGTGACAATTTC+GGG | 0.202791 | 2_4:+55975121 | None:intergenic |
| TAATAGGATATTGGTAAAAT+TGG | 0.213521 | 2_4:-55979907 | Msa0336540:five_prime_UTR |
| CATATTATCATGTTTGTAAA+AGG | 0.226181 | 2_4:+55974547 | None:intergenic |
| TGTGTTCAGTGCTCCATCTT+TGG | 0.282234 | 2_4:-55974918 | Msa0336540:CDS |
| ATATCTCATGGACCGGGTTC+TGG | 0.282612 | 2_4:-55977024 | Msa0336540:CDS |
| AGCTAACTGGGTGACAATTT+CGG | 0.307177 | 2_4:+55975120 | None:intergenic |
| TTCATAAGTGTCTACTAGTT+TGG | 0.313088 | 2_4:-55974842 | Msa0336540:three_prime_UTR |
| TATAGTAACATACAGCTAAC+TGG | 0.320691 | 2_4:+55975107 | None:intergenic |
| ATAAGATAAGATAAAATAAT+AGG | 0.325529 | 2_4:-55979923 | None:intergenic |
| CTTTACCTTCAGATGAATTA+CGG | 0.325787 | 2_4:-55978474 | Msa0336540:CDS |
| AAGTAGTCCAGAGGAGCTTC+AGG | 0.337504 | 2_4:-55977199 | Msa0336540:intron |
| CACTTCAGGTGGTTTGGTTA+AGG | 0.348580 | 2_4:-55976167 | Msa0336540:CDS |
| AAGATAAAATAATAGGATAT+TGG | 0.363620 | 2_4:-55979916 | None:intergenic |
| TTTGGTTTGTGTCAGAATCT+TGG | 0.364462 | 2_4:-55974824 | Msa0336540:three_prime_UTR |
| CTCTGTGCTAGAAGTATTGT+TGG | 0.365848 | 2_4:-55977069 | Msa0336540:CDS |
| TAGGTAACCTGTCGTCTTCT+TGG | 0.368682 | 2_4:-55977237 | Msa0336540:CDS |
| GGTATTCACTTCAGGTGGTT+TGG | 0.370599 | 2_4:-55976173 | Msa0336540:CDS |
| TTTACCTTCAGATGAATTAC+GGG | 0.396554 | 2_4:-55978473 | Msa0336540:CDS |
| TGCCTCCCTTGTGTAGGATT+AGG | 0.402644 | 2_4:+55978577 | None:intergenic |
| CAAATTCCGGTGAGGCCTTA+CGG | 0.413571 | 2_4:-55979738 | Msa0336540:five_prime_UTR |
| TTTCACACCTGAAGCTCCTC+TGG | 0.413654 | 2_4:+55977192 | None:intergenic |
| GAAGCAGGGGTATTCACTTC+AGG | 0.423138 | 2_4:-55976181 | Msa0336540:CDS |
| TTTCACCTCATCAAACGCTT+TGG | 0.424379 | 2_4:-55979658 | Msa0336540:CDS |
| TCATCTGTCTCTAGAAAAGC+TGG | 0.427031 | 2_4:+55974774 | None:intergenic |
| GTGATTTATATCTCATGGAC+CGG | 0.427068 | 2_4:-55977031 | Msa0336540:CDS |
| CACAAGGGAGGCAACGGAAA+AGG | 0.435108 | 2_4:-55978567 | Msa0336540:CDS |
| TTCGTCAATTAGAACCAGAT+TGG | 0.438867 | 2_4:-55975159 | Msa0336540:CDS |
| ATAAAACATCATACCTTGAC+TGG | 0.444866 | 2_4:+55978421 | None:intergenic |
| GAGGTGAAAGAGGTCTTGTT+TGG | 0.449964 | 2_4:+55979672 | None:intergenic |
| GTAAAATTGGAAGAGAAACT+TGG | 0.450341 | 2_4:-55979894 | Msa0336540:five_prime_UTR |
| TGGTGAAACATGGCCGTGTC+TGG | 0.450786 | 2_4:-55979715 | Msa0336540:exon |
| TTTGAATTTGTGCTAGCTCC+AGG | 0.451708 | 2_4:+55978523 | None:intergenic |
| ATTCTGTGATTTATATCTCA+TGG | 0.455224 | 2_4:-55977036 | Msa0336540:CDS |
| CTTGTAGCGTTAGAAGAAGC+AGG | 0.455948 | 2_4:-55976196 | Msa0336540:CDS |
| CATTAACAAGTATTGGTTGA+AGG | 0.461894 | 2_4:+55974498 | None:intergenic |
| CTCACTATCTGCCCCAAGGT+TGG | 0.469459 | 2_4:+55978269 | None:intergenic |
| CTTTGATGGGTTCTCACACT+AGG | 0.470411 | 2_4:-55974725 | Msa0336540:three_prime_UTR |
| GGTGGTGCATCTAGTAATCC+TGG | 0.473380 | 2_4:-55978541 | Msa0336540:CDS |
| TGATTGAATGATTAGGAACC+AGG | 0.485857 | 2_4:-55979424 | Msa0336540:intron |
| CTCATAGGCGCAGTTGTTGA+CGG | 0.487364 | 2_4:-55979852 | Msa0336540:five_prime_UTR |
| CTCTTCAGCAGCACTGAGAA+TGG | 0.490260 | 2_4:-55975196 | Msa0336540:CDS |
| GAAGTTGAGTGAAGGAAGAA+AGG | 0.490537 | 2_4:-55978243 | Msa0336540:intron |
| AACCTCTGACGACAGCTCAT+AGG | 0.502156 | 2_4:-55979867 | Msa0336540:five_prime_UTR |
| TTTGTGTCGATATGCCAATC+TGG | 0.503340 | 2_4:+55975145 | None:intergenic |
| GATGGGTTCTCACACTAGGT+TGG | 0.517754 | 2_4:-55974721 | Msa0336540:three_prime_UTR |
| GTGAAAGAGGTCTTGTTTGG+AGG | 0.521964 | 2_4:+55979675 | None:intergenic |
| CCAAAGAAAAGTTCCAAAGA+TGG | 0.522578 | 2_4:+55974905 | None:intergenic |
| TGTATTGTTTGTGTCTCCGT+TGG | 0.523086 | 2_4:+55979825 | None:intergenic |
| TAGAGACAGATGAGAAAACT+AGG | 0.523346 | 2_4:-55974764 | Msa0336540:three_prime_UTR |
| TGTGCCCGTAATTCATCTGA+AGG | 0.526195 | 2_4:+55978469 | None:intergenic |
| CGCCTATGAGCTGTCGTCAG+AGG | 0.532495 | 2_4:+55979865 | None:intergenic |
| TTCCGTTGCCTCCCTTGTGT+AGG | 0.536638 | 2_4:+55978571 | None:intergenic |
| TCATACACGTGCACAGAAGC+AGG | 0.536678 | 2_4:+55974691 | None:intergenic |
| GTGAGGCAGAAGTTGAGTGA+AGG | 0.552513 | 2_4:-55978251 | Msa0336540:CDS |
| GGCCTTACGGTGGTGAAACA+TGG | 0.555565 | 2_4:-55979725 | Msa0336540:exon |
| AGCGTTTGATGAGGTGAAAG+AGG | 0.557278 | 2_4:+55979662 | None:intergenic |
| ATCCTACACAAGGGAGGCAA+CGG | 0.560083 | 2_4:-55978573 | Msa0336540:CDS |
| CGCTTTCGTCATCCAGAACC+CGG | 0.561411 | 2_4:+55977012 | None:intergenic |
| AACAAGTATTGGTTGAAGGA+TGG | 0.564014 | 2_4:+55974502 | None:intergenic |
| AGGTGGTTTGGTTAAGGACA+AGG | 0.566844 | 2_4:-55976161 | Msa0336540:intron |
| GGGAGGCAACGGAAAAGGCA+AGG | 0.578364 | 2_4:-55978562 | Msa0336540:CDS |
| TCACCACCGTAAGGCCTCAC+CGG | 0.578554 | 2_4:+55979732 | None:intergenic |
| CAACCTTGGGGCAGATAGTG+AGG | 0.591229 | 2_4:-55978268 | Msa0336540:CDS |
| GGCCATGTTTCACCACCGTA+AGG | 0.591533 | 2_4:+55979723 | None:intergenic |
| ATCGTTGTCACCACCAGACA+CGG | 0.593071 | 2_4:+55979702 | None:intergenic |
| CTGCCTCACTATCTGCCCCA+AGG | 0.597162 | 2_4:+55978265 | None:intergenic |
| TGAGTTCTTTCAGCCAGTCA+AGG | 0.598134 | 2_4:-55978434 | Msa0336540:intron |
| TTGTAGCGTTAGAAGAAGCA+GGG | 0.599376 | 2_4:-55976195 | Msa0336540:CDS |
| GCAGGGGTATTCACTTCAGG+TGG | 0.601629 | 2_4:-55976178 | Msa0336540:CDS |
| TGATTTATATCTCATGGACC+GGG | 0.604687 | 2_4:-55977030 | Msa0336540:CDS |
| GATCACTCCAAGAAGACGAC+AGG | 0.606234 | 2_4:+55977230 | None:intergenic |
| TAGCACAAATTCAAATGCGT+CGG | 0.610167 | 2_4:-55978515 | Msa0336540:CDS |
| ATAGTAACATACAGCTAACT+GGG | 0.617813 | 2_4:+55975108 | None:intergenic |
| GAAGGTAAAGAAGCATCAGA+AGG | 0.624200 | 2_4:+55978487 | None:intergenic |
| AGTTGTTGACGGCAAACCAA+CGG | 0.625235 | 2_4:-55979841 | Msa0336540:five_prime_UTR |
| CCTCTGGACTACTTTCCTCA+AGG | 0.629211 | 2_4:+55977208 | None:intergenic |
| TGAAACATGGCCGTGTCTGG+TGG | 0.631096 | 2_4:-55979712 | Msa0336540:exon |
| TGGAGCACTGAACACATTAG+CGG | 0.631948 | 2_4:+55974925 | None:intergenic |
| CATCTGTCTCTAGAAAAGCT+GGG | 0.635551 | 2_4:+55974775 | None:intergenic |
| AAGCACCAAAGCGTTTGATG+AGG | 0.654478 | 2_4:+55979653 | None:intergenic |
| CCTTGAGGAAAGTAGTCCAG+AGG | 0.659450 | 2_4:-55977208 | Msa0336540:CDS |
| TCTTTGTTCAAATTCCGGTG+AGG | 0.659503 | 2_4:-55979746 | Msa0336540:five_prime_UTR |
| CTCCTAATCCTACACAAGGG+AGG | 0.662029 | 2_4:-55978579 | Msa0336540:CDS |
| AGATCTCCTAATCCTACACA+AGG | 0.662631 | 2_4:-55978583 | Msa0336540:CDS |
| AGGCAACGGAAAAGGCAAGG+TGG | 0.677448 | 2_4:-55978559 | Msa0336540:CDS |
| GGTTCTGGATGACGAAAGCG+AGG | 0.681958 | 2_4:-55977009 | Msa0336540:intron |
| TCTTCTTGGAGTGATCCTTG+AGG | 0.683304 | 2_4:-55977223 | Msa0336540:CDS |
| TGTAGCGTTAGAAGAAGCAG+GGG | 0.684444 | 2_4:-55976194 | Msa0336540:CDS |
| GATTGAATGATTAGGAACCA+GGG | 0.691614 | 2_4:-55979423 | Msa0336540:intron |
| CAACAATACTTCTAGCACAG+AGG | 0.703729 | 2_4:+55977070 | None:intergenic |
| AACATGATAATATGTCATCG+TGG | 0.720893 | 2_4:-55974538 | Msa0336540:three_prime_UTR |
| ATTCCGGTGAGGCCTTACGG+TGG | 0.729776 | 2_4:-55979735 | Msa0336540:five_prime_UTR |
| GATCTCCTAATCCTACACAA+GGG | 0.732816 | 2_4:-55978582 | Msa0336540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAAATTTTTAATCTACTTA+AGG | - | chr2_4:55976320-55976339 | Msa0336540:intron | 10.0% |
| !!! | TATTTTTTGTGATATATGAT+TGG | - | chr2_4:55974876-55974895 | Msa0336540:exon | 15.0% |
| !!! | TGAAATTTTGATATTTTTGA+TGG | - | chr2_4:55974920-55974939 | Msa0336540:CDS | 15.0% |
| !!! | TTTTTGTTAGAAACTTTAAA+TGG | - | chr2_4:55975025-55975044 | Msa0336540:intron | 15.0% |
| !!! | TTTTGTTAGAAACTTTAAAT+GGG | - | chr2_4:55975026-55975045 | Msa0336540:intron | 15.0% |
| !!! | TTTTTTTTTGCTTTTAATGT+TGG | - | chr2_4:55975049-55975068 | Msa0336540:intron | 15.0% |
| !!! | TTTTTTTTGCTTTTAATGTT+GGG | - | chr2_4:55975050-55975069 | Msa0336540:intron | 15.0% |
| !! | AAACTATAAGAGAAAATATT+AGG | - | chr2_4:55975503-55975522 | Msa0336540:intron | 15.0% |
| !! | AAGATAGACAATAAAAAAAT+GGG | + | chr2_4:55976927-55976946 | None:intergenic | 15.0% |
| !! | TAAGATAGACAATAAAAAAA+TGG | + | chr2_4:55976928-55976947 | None:intergenic | 15.0% |
| !!! | AATTTTACATTAACAAGTAT+TGG | + | chr2_4:55979901-55979920 | None:intergenic | 15.0% |
| !! | TAATAGGATATTGGTAAAAT+TGG | - | chr2_4:55974482-55974501 | Msa0336540:three_prime_UTR | 20.0% |
| !!! | TGATATTTTTGATGGATTTT+TGG | - | chr2_4:55974928-55974947 | Msa0336540:CDS | 20.0% |
| !! | ATCATTCAATCAACAATAAA+GGG | + | chr2_4:55974957-55974976 | None:intergenic | 20.0% |
| !! | AATCATTCAATCAACAATAA+AGG | + | chr2_4:55974958-55974977 | None:intergenic | 20.0% |
| !!! | TTATTGTTGATTGAATGATT+AGG | - | chr2_4:55974958-55974977 | Msa0336540:CDS | 20.0% |
| !! | ACCTACTATGTATTTAAATA+AGG | - | chr2_4:55975142-55975161 | Msa0336540:CDS | 20.0% |
| !!! | ACCTTATTTAAATACATAGT+AGG | + | chr2_4:55975146-55975165 | None:intergenic | 20.0% |
| !! | CTATGTATTTAAATAAGGTA+TGG | - | chr2_4:55975147-55975166 | Msa0336540:CDS | 20.0% |
| !!! | AAATGATCAATGTAATGTTT+TGG | - | chr2_4:55975187-55975206 | Msa0336540:CDS | 20.0% |
| !!! | TAATGTTTTGGTCTTTTTTT+TGG | - | chr2_4:55975199-55975218 | Msa0336540:CDS | 20.0% |
| !!! | ATTTTCTCTTATAGTTTTTC+AGG | + | chr2_4:55975500-55975519 | None:intergenic | 20.0% |
| !! | TATATGATAATAGAACATGA+TGG | - | chr2_4:55975563-55975582 | Msa0336540:intron | 20.0% |
| !!! | ATGATATTGTACTTGTTATT+AGG | - | chr2_4:55975718-55975737 | Msa0336540:intron | 20.0% |
| !! | AAAGCTATAAAAAAATACAG+CGG | + | chr2_4:55976064-55976083 | None:intergenic | 20.0% |
| !!! | AAATTTAAACTCTAAGACAA+TGG | + | chr2_4:55976308-55976327 | None:intergenic | 20.0% |
| !! | TAATCTATAAAGCTATAAAC+AGG | + | chr2_4:55976372-55976391 | None:intergenic | 20.0% |
| !! | AATAAGAATCTCATTACTTT+AGG | - | chr2_4:55976577-55976596 | Msa0336540:intron | 20.0% |
| !! | ATAAGAATCTCATTACTTTA+GGG | - | chr2_4:55976578-55976597 | Msa0336540:intron | 20.0% |
| !! | AGTTATTTATTTAAAAGCGA+AGG | - | chr2_4:55976639-55976658 | Msa0336540:intron | 20.0% |
| !! | TTATTGTCTATCTTAATAAG+TGG | - | chr2_4:55976933-55976952 | Msa0336540:intron | 20.0% |
| !!! | ATAAAACAAAAGTATACGAA+AGG | + | chr2_4:55977227-55977246 | None:intergenic | 20.0% |
| !! | ATATTCGTAACATTGAAAAA+TGG | + | chr2_4:55977507-55977526 | None:intergenic | 20.0% |
| !!! | TTCATTTTTACAGAATCATT+CGG | + | chr2_4:55977540-55977559 | None:intergenic | 20.0% |
| !! | ATTTCATATTCTGAATCTTA+GGG | + | chr2_4:55977601-55977620 | None:intergenic | 20.0% |
| !! | AATTTCATATTCTGAATCTT+AGG | + | chr2_4:55977602-55977621 | None:intergenic | 20.0% |
| !! | TCACAAAAGTTGTTTAAAAA+TGG | + | chr2_4:55977675-55977694 | None:intergenic | 20.0% |
| !!! | TCACAAAAGTTGTTTAAAAT+TGG | - | chr2_4:55977862-55977881 | Msa0336540:intron | 20.0% |
| !!! | TATCATTCCTCTTTTTTTTT+AGG | - | chr2_4:55977894-55977913 | Msa0336540:intron | 20.0% |
| !!! | ATCATTCCTCTTTTTTTTTA+GGG | - | chr2_4:55977895-55977914 | Msa0336540:intron | 20.0% |
| !! | TTACATTCTATCTTTATGTA+TGG | - | chr2_4:55978148-55978167 | Msa0336540:intron | 20.0% |
| !!! | TCTAAAGGTAATCTTTAAAA+TGG | + | chr2_4:55978538-55978557 | None:intergenic | 20.0% |
| !! | CAATAATTAGATAAGAGTAA+AGG | + | chr2_4:55978566-55978585 | None:intergenic | 20.0% |
| !! | TAGAATCTATATATTTGTGA+AGG | - | chr2_4:55978780-55978799 | Msa0336540:intron | 20.0% |
| !! | ATTAGAAAGAAACAATGATA+TGG | + | chr2_4:55979368-55979387 | None:intergenic | 20.0% |
| !!! | ATTCACAATTTTCAAACAAA+AGG | + | chr2_4:55979763-55979782 | None:intergenic | 20.0% |
| !! | CATATTATCATGTTTGTAAA+AGG | + | chr2_4:55979845-55979864 | None:intergenic | 20.0% |
| !! | TGTTTTCTTTGTTCAAATTC+CGG | - | chr2_4:55974638-55974657 | Msa0336540:three_prime_UTR | 25.0% |
| !!! | ACCTTTTTTCATCATTCTAT+TGG | - | chr2_4:55974820-55974839 | Msa0336540:three_prime_UTR | 25.0% |
| ! | TCCAATAGAATGATGAAAAA+AGG | + | chr2_4:55974824-55974843 | None:intergenic | 25.0% |
| ! | AAAACAAACTTTCACTCTTT+AGG | + | chr2_4:55975007-55975026 | None:intergenic | 25.0% |
| ! | AAATAAGGTATGGTTTAAGT+TGG | - | chr2_4:55975157-55975176 | Msa0336540:CDS | 25.0% |
| ! | GACTTGTAGATTATGTATTA+AGG | - | chr2_4:55975426-55975445 | Msa0336540:intron | 25.0% |
| ! | AATTCTGAATCATTAAGCAA+AGG | + | chr2_4:55976009-55976028 | None:intergenic | 25.0% |
| ! | AATAACCATAAAACTAAGTC+TGG | + | chr2_4:55976222-55976241 | None:intergenic | 25.0% |
| !!! | ATCATAAGAAATGTCGATTT+GGG | - | chr2_4:55976276-55976295 | Msa0336540:intron | 25.0% |
| ! | AAGGTTAAATTAACATGTCA+TGG | - | chr2_4:55976339-55976358 | Msa0336540:intron | 25.0% |
| ! | TAAGAATCTCATTACTTTAG+GGG | - | chr2_4:55976579-55976598 | Msa0336540:intron | 25.0% |
| ! | CTATGTTTATGTTTCTCTTT+AGG | - | chr2_4:55976692-55976711 | Msa0336540:intron | 25.0% |
| !! | TATGTTTCTCTTTAGGTTAA+AGG | - | chr2_4:55976699-55976718 | Msa0336540:intron | 25.0% |
| ! | CAAAAGTAGAAAAATTGTCT+TGG | + | chr2_4:55976864-55976883 | None:intergenic | 25.0% |
| !! | CAAGACAATTTTTCTACTTT+TGG | - | chr2_4:55976862-55976881 | Msa0336540:intron | 25.0% |
| ! | ATTCTGTGATTTATATCTCA+TGG | - | chr2_4:55977353-55977372 | Msa0336540:intron | 25.0% |
| ! | CATGATGAGTGATTAATATA+TGG | + | chr2_4:55977422-55977441 | None:intergenic | 25.0% |
| ! | ATGATTCTGTAAAAATGAAC+TGG | - | chr2_4:55977541-55977560 | Msa0336540:intron | 25.0% |
| ! | TGATTCTGTAAAAATGAACT+GGG | - | chr2_4:55977542-55977561 | Msa0336540:intron | 25.0% |
| !! | ATCTTAGGGTAAGATATTTT+TGG | + | chr2_4:55977587-55977606 | None:intergenic | 25.0% |
| ! | ATTTCTCCCTAAAAAAAAAG+AGG | + | chr2_4:55977904-55977923 | None:intergenic | 25.0% |
| !! | TTTATGATCTTTTCCTAGTT+TGG | - | chr2_4:55977967-55977986 | Msa0336540:intron | 25.0% |
| ! | AGAAAAAAACACAATGTTTG+AGG | + | chr2_4:55978271-55978290 | None:intergenic | 25.0% |
| ! | TAGAATTTAATTACCATGCA+AGG | - | chr2_4:55978704-55978723 | Msa0336540:intron | 25.0% |
| ! | ATAGATTCTAGATTCTAGAT+AGG | + | chr2_4:55978770-55978789 | None:intergenic | 25.0% |
| !! | ATTCCAATCATATTTTACCA+TGG | + | chr2_4:55978836-55978855 | None:intergenic | 25.0% |
| ! | TGAGATGTTACAAATTTAGA+TGG | - | chr2_4:55979006-55979025 | Msa0336540:intron | 25.0% |
| ! | TATCAAAATAGAGGACAAAA+AGG | + | chr2_4:55979152-55979171 | None:intergenic | 25.0% |
| !!! | ATGTGATTAGTAGTGTTTTT+TGG | + | chr2_4:55979523-55979542 | None:intergenic | 25.0% |
| GTAAAATTGGAAGAGAAACT+TGG | - | chr2_4:55974495-55974514 | Msa0336540:three_prime_UTR | 30.0% | |
| !!! | GCTTTTGTTACTTTCAAGAT+CGG | - | chr2_4:55974755-55974774 | Msa0336540:three_prime_UTR | 30.0% |
| ! | AAATGAGCTTTTATGTGTCA+TGG | - | chr2_4:55975092-55975111 | Msa0336540:intron | 30.0% |
| ! | TGTCATGGTTTTTGTCAAAT+TGG | - | chr2_4:55975107-55975126 | Msa0336540:intron | 30.0% |
| ! | GTCATGGTTTTTGTCAAATT+GGG | - | chr2_4:55975108-55975127 | Msa0336540:intron | 30.0% |
| ! | TCATGGTTTTTGTCAAATTG+GGG | - | chr2_4:55975109-55975128 | Msa0336540:intron | 30.0% |
| !!! | TTTTGGAGCATGTGTAAATA+AGG | - | chr2_4:55975216-55975235 | Msa0336540:intron | 30.0% |
| AACAACATTAAAGAGAGAGT+TGG | - | chr2_4:55975333-55975352 | Msa0336540:intron | 30.0% | |
| ACAACATTAAAGAGAGAGTT+GGG | - | chr2_4:55975334-55975353 | Msa0336540:intron | 30.0% | |
| ATTAAGGAGAGTAGATTAGA+TGG | - | chr2_4:55975442-55975461 | Msa0336540:intron | 30.0% | |
| AGATCTAGAGATTAATGAGT+TGG | - | chr2_4:55975528-55975547 | Msa0336540:intron | 30.0% | |
| ! | TAATGAGTTGGATCGAAATA+TGG | - | chr2_4:55975540-55975559 | Msa0336540:intron | 30.0% |
| AAGTACAATATCATGAGCTT+TGG | + | chr2_4:55975712-55975731 | None:intergenic | 30.0% | |
| TATTAGGATATTCGCACTAT+TGG | - | chr2_4:55975734-55975753 | Msa0336540:intron | 30.0% | |
| ATTAGGATATTCGCACTATT+GGG | - | chr2_4:55975735-55975754 | Msa0336540:intron | 30.0% | |
| CTTTACCTTCAGATGAATTA+CGG | - | chr2_4:55975915-55975934 | Msa0336540:intron | 30.0% | |
| TTTACCTTCAGATGAATTAC+GGG | - | chr2_4:55975916-55975935 | Msa0336540:intron | 30.0% | |
| ATAAAACATCATACCTTGAC+TGG | + | chr2_4:55975971-55975990 | None:intergenic | 30.0% | |
| ATCATTAAGCAAAGGAAAGT+GGG | + | chr2_4:55976001-55976020 | None:intergenic | 30.0% | |
| AATCATTAAGCAAAGGAAAG+TGG | + | chr2_4:55976002-55976021 | None:intergenic | 30.0% | |
| ! | GATCATAAGAAATGTCGATT+TGG | - | chr2_4:55976275-55976294 | Msa0336540:intron | 30.0% |
| !! | TTTAAACTCTAAGACAATGG+TGG | + | chr2_4:55976305-55976324 | None:intergenic | 30.0% |
| CACACACTTCGTATTTATAA+TGG | + | chr2_4:55976496-55976515 | None:intergenic | 30.0% | |
| !!! | CATAGCTTGTATTTTAAAGC+TGG | + | chr2_4:55976677-55976696 | None:intergenic | 30.0% |
| ACTTATTGGTCATAATAGCT+GGG | + | chr2_4:55977126-55977145 | None:intergenic | 30.0% | |
| AACTTATTGGTCATAATAGC+TGG | + | chr2_4:55977127-55977146 | None:intergenic | 30.0% | |
| ATGACCAATAAGTTGTATGT+AGG | - | chr2_4:55977133-55977152 | Msa0336540:intron | 30.0% | |
| GTTACCTACATACAACTTAT+TGG | + | chr2_4:55977140-55977159 | None:intergenic | 30.0% | |
| GTCTTATGTAATGAACTTGA+TGG | - | chr2_4:55977441-55977460 | Msa0336540:intron | 30.0% | |
| TGTAAAAATGAACTGGGATA+TGG | - | chr2_4:55977548-55977567 | Msa0336540:intron | 30.0% | |
| !!! | CTTTTTTCGTCTCTTCTTAT+TGG | + | chr2_4:55977838-55977857 | None:intergenic | 30.0% |
| TTCGAACTAAATTTGATCTC+AGG | - | chr2_4:55978074-55978093 | Msa0336540:intron | 30.0% | |
| !! | ATGGTGTCGTGTTATAATAT+TGG | + | chr2_4:55978817-55978836 | None:intergenic | 30.0% |
| AATATTATAACACGACACCA+TGG | - | chr2_4:55978816-55978835 | Msa0336540:intron | 30.0% | |
| ACACCATGGTAAAATATGAT+TGG | - | chr2_4:55978830-55978849 | Msa0336540:intron | 30.0% | |
| GTATAAAAAAAGTAGTGCAC+AGG | + | chr2_4:55978859-55978878 | None:intergenic | 30.0% | |
| !!! | GTGCACTACTTTTTTTATAC+TGG | - | chr2_4:55978859-55978878 | Msa0336540:intron | 30.0% |
| AAACATAAGTATGCAGCAAT+CGG | + | chr2_4:55979121-55979140 | None:intergenic | 30.0% | |
| ATAGTAACATACAGCTAACT+GGG | + | chr2_4:55979284-55979303 | None:intergenic | 30.0% | |
| TATAGTAACATACAGCTAAC+TGG | + | chr2_4:55979285-55979304 | None:intergenic | 30.0% | |
| TTCATAAGTGTCTACTAGTT+TGG | - | chr2_4:55979547-55979566 | Msa0336540:intron | 30.0% | |
| AAAAGCTGGGAAAAAATGTA+TGG | + | chr2_4:55979604-55979623 | None:intergenic | 30.0% | |
| !! | AGATTTTCTTCAAGCTTTGA+TGG | - | chr2_4:55979650-55979669 | Msa0336540:CDS | 30.0% |
| !! | GATTTTCTTCAAGCTTTGAT+GGG | - | chr2_4:55979651-55979670 | Msa0336540:CDS | 30.0% |
| AACATGATAATATGTCATCG+TGG | - | chr2_4:55979851-55979870 | Msa0336540:five_prime_UTR | 30.0% | |
| !! | CATTAACAAGTATTGGTTGA+AGG | + | chr2_4:55979894-55979913 | None:intergenic | 30.0% |
| TGATTGAATGATTAGGAACC+AGG | - | chr2_4:55974965-55974984 | Msa0336540:CDS | 35.0% | |
| GATTGAATGATTAGGAACCA+GGG | - | chr2_4:55974966-55974985 | Msa0336540:CDS | 35.0% | |
| !! | TTTGCTTTTAATGTTGGGTG+TGG | - | chr2_4:55975055-55975074 | Msa0336540:intron | 35.0% |
| !! | TTGCTTTTAATGTTGGGTGT+GGG | - | chr2_4:55975056-55975075 | Msa0336540:intron | 35.0% |
| CAACATTAAAGAGAGAGTTG+GGG | - | chr2_4:55975335-55975354 | Msa0336540:intron | 35.0% | |
| TTAGGATATTCGCACTATTG+GGG | - | chr2_4:55975736-55975755 | Msa0336540:intron | 35.0% | |
| TAGCACAAATTCAAATGCGT+CGG | - | chr2_4:55975874-55975893 | Msa0336540:intron | 35.0% | |
| ATCCACAAACATTCATGCAT+TGG | + | chr2_4:55976035-55976054 | None:intergenic | 35.0% | |
| !!! | TGAATTTTTTCAGCCAACCT+TGG | - | chr2_4:55976107-55976126 | Msa0336540:intron | 35.0% |
| !!! | GAATTTTTTCAGCCAACCTT+GGG | - | chr2_4:55976108-55976127 | Msa0336540:intron | 35.0% |
| !!! | AATTTTTTCAGCCAACCTTG+GGG | - | chr2_4:55976109-55976128 | Msa0336540:intron | 35.0% |
| ATGCACTCTTTATGTAGTAG+TGG | - | chr2_4:55976188-55976207 | Msa0336540:CDS | 35.0% | |
| !!! | GTGTTCCAGACTTAGTTTTA+TGG | - | chr2_4:55976214-55976233 | Msa0336540:intron | 35.0% |
| ! | AGGAGATGGTAATTTCTAGA+AGG | + | chr2_4:55976253-55976272 | None:intergenic | 35.0% |
| ! | TAATTAGTAAGCACTAGCCT+AGG | + | chr2_4:55976448-55976467 | None:intergenic | 35.0% |
| ATTGGTTAAGCAGCTAAAAG+AGG | - | chr2_4:55976779-55976798 | Msa0336540:intron | 35.0% | |
| CGATATAGTTGCGTATAAAC+TGG | - | chr2_4:55977019-55977038 | Msa0336540:CDS | 35.0% | |
| ATAGTTGCGTATAAACTGGA+TGG | - | chr2_4:55977023-55977042 | Msa0336540:CDS | 35.0% | |
| TAGTTGCGTATAAACTGGAT+GGG | - | chr2_4:55977024-55977043 | Msa0336540:CDS | 35.0% | |
| TCATAATAGCTGGGAAACAT+AGG | + | chr2_4:55977117-55977136 | None:intergenic | 35.0% | |
| GTGATTTATATCTCATGGAC+CGG | - | chr2_4:55977358-55977377 | Msa0336540:intron | 35.0% | |
| TGATTTATATCTCATGGACC+GGG | - | chr2_4:55977359-55977378 | Msa0336540:intron | 35.0% | |
| TGTAAACTACAGCACACAAA+AGG | + | chr2_4:55978389-55978408 | None:intergenic | 35.0% | |
| TTTGACTGTGAACATTTGCA+CGG | - | chr2_4:55978471-55978490 | Msa0336540:CDS | 35.0% | |
| AATGGCAAAAGATGTTTCTC+AGG | + | chr2_4:55978520-55978539 | None:intergenic | 35.0% | |
| AGAGTAAAGGTTCTCTCTAA+AGG | + | chr2_4:55978553-55978572 | None:intergenic | 35.0% | |
| AATAAACCGTCATCATGACT+AGG | - | chr2_4:55978654-55978673 | Msa0336540:intron | 35.0% | |
| ATAAACCGTCATCATGACTA+GGG | - | chr2_4:55978655-55978674 | Msa0336540:intron | 35.0% | |
| ! | ATATGTTTGTTGCCATTTGC+TGG | - | chr2_4:55978911-55978930 | Msa0336540:intron | 35.0% |
| !!! | CATCAGAATTTTAGGTTCCA+AGG | + | chr2_4:55978961-55978980 | None:intergenic | 35.0% |
| TGACAAGATATAACTCTTGC+AGG | + | chr2_4:55978984-55979003 | None:intergenic | 35.0% | |
| ! | GCTACAGATCACAATTTTGT+CGG | + | chr2_4:55979043-55979062 | None:intergenic | 35.0% |
| GGTATGGGATATCAAAATAG+AGG | + | chr2_4:55979161-55979180 | None:intergenic | 35.0% | |
| TTCGTCAATTAGAACCAGAT+TGG | - | chr2_4:55979230-55979249 | Msa0336540:intron | 35.0% | |
| AACAACAAATCATGTTGCAG+AGG | - | chr2_4:55979392-55979411 | Msa0336540:intron | 35.0% | |
| ! | GCAGTTCGTTCTGTTTTATA+AGG | + | chr2_4:55979445-55979464 | None:intergenic | 35.0% |
| CCAAAGAAAAGTTCCAAAGA+TGG | + | chr2_4:55979487-55979506 | None:intergenic | 35.0% | |
| !!! | CCATCTTTGGAACTTTTCTT+TGG | - | chr2_4:55979484-55979503 | Msa0336540:intron | 35.0% |
| !!! | AGTGTTTTTTGGTTCTCATG+TGG | + | chr2_4:55979512-55979531 | None:intergenic | 35.0% |
| !! | TTTGGTTTGTGTCAGAATCT+TGG | - | chr2_4:55979565-55979584 | Msa0336540:intron | 35.0% |
| GGGAAAAAATGTATGGTGAA+AGG | + | chr2_4:55979597-55979616 | None:intergenic | 35.0% | |
| TAGAGACAGATGAGAAAACT+AGG | - | chr2_4:55979625-55979644 | Msa0336540:CDS | 35.0% | |
| ! | TCAGACATTTTGAACTGACA+AGG | - | chr2_4:55979788-55979807 | Msa0336540:five_prime_UTR | 35.0% |
| !! | AACAAGTATTGGTTGAAGGA+TGG | + | chr2_4:55979890-55979909 | None:intergenic | 35.0% |
| TGTATTGTTTGTGTCTCCGT+TGG | + | chr2_4:55974567-55974586 | None:intergenic | 40.0% | |
| TCTTTGTTCAAATTCCGGTG+AGG | - | chr2_4:55974643-55974662 | Msa0336540:three_prime_UTR | 40.0% | |
| TTTCACCTCATCAAACGCTT+TGG | - | chr2_4:55974731-55974750 | Msa0336540:three_prime_UTR | 40.0% | |
| GGTTGTTAATTATCCAACCC+TGG | + | chr2_4:55974986-55975005 | None:intergenic | 40.0% | |
| AGGAGAGTAGATTAGATGGA+AGG | - | chr2_4:55975446-55975465 | Msa0336540:intron | 40.0% | |
| !! | ACTAAGTGGGATTAGCTACA+TGG | + | chr2_4:55975600-55975619 | None:intergenic | 40.0% |
| ATGTAGCTAATCCCACTTAG+TGG | - | chr2_4:55975599-55975618 | Msa0336540:intron | 40.0% | |
| TGTAGCTAATCCCACTTAGT+GGG | - | chr2_4:55975600-55975619 | Msa0336540:intron | 40.0% | |
| TAATCCCACTTAGTGGGATA+AGG | - | chr2_4:55975606-55975625 | Msa0336540:intron | 40.0% | |
| ! | CTGTTGCGATTGTTTTCACT+TGG | - | chr2_4:55975774-55975793 | Msa0336540:intron | 40.0% |
| ! | TTGCGATTGTTTTCACTTGG+AGG | - | chr2_4:55975777-55975796 | Msa0336540:intron | 40.0% |
| AGATCTCCTAATCCTACACA+AGG | - | chr2_4:55975806-55975825 | Msa0336540:intron | 40.0% | |
| GATCTCCTAATCCTACACAA+GGG | - | chr2_4:55975807-55975826 | Msa0336540:intron | 40.0% | |
| TTTGAATTTGTGCTAGCTCC+AGG | + | chr2_4:55975869-55975888 | None:intergenic | 40.0% | |
| !! | GAAGGTAAAGAAGCATCAGA+AGG | + | chr2_4:55975905-55975924 | None:intergenic | 40.0% |
| AGCCAATGCATGAATGTTTG+TGG | - | chr2_4:55976030-55976049 | Msa0336540:intron | 40.0% | |
| GAAGTTGAGTGAAGGAAGAA+AGG | - | chr2_4:55976146-55976165 | Msa0336540:intron | 40.0% | |
| TTTCTTATGATCGCAGGAGA+TGG | + | chr2_4:55976267-55976286 | None:intergenic | 40.0% | |
| TCGACATTTCTTATGATCGC+AGG | + | chr2_4:55976273-55976292 | None:intergenic | 40.0% | |
| CCTAGGAAGTTGTATACTCT+AGG | + | chr2_4:55976431-55976450 | None:intergenic | 40.0% | |
| CCTAGAGTATACAACTTCCT+AGG | - | chr2_4:55976428-55976447 | Msa0336540:intron | 40.0% | |
| ! | TGGGAATACTTGATGACATG+AGG | - | chr2_4:55977043-55977062 | Msa0336540:CDS | 40.0% |
| CAACAATACTTCTAGCACAG+AGG | + | chr2_4:55977322-55977341 | None:intergenic | 40.0% | |
| !! | CTCTGTGCTAGAAGTATTGT+TGG | - | chr2_4:55977320-55977339 | Msa0336540:intron | 40.0% |
| CAGTATGTGTGTTCCAAACT+AGG | + | chr2_4:55977983-55978002 | None:intergenic | 40.0% | |
| AGAGTAGCAAGAGGAATACT+AGG | + | chr2_4:55978100-55978119 | None:intergenic | 40.0% | |
| TTGTAGCGTTAGAAGAAGCA+GGG | - | chr2_4:55978194-55978213 | Msa0336540:intron | 40.0% | |
| AAGTTAACCACCTTCTTGCT+GGG | - | chr2_4:55978297-55978316 | Msa0336540:intron | 40.0% | |
| ! | CCTTTTACATTGTCCTTGCA+TGG | + | chr2_4:55978720-55978739 | None:intergenic | 40.0% |
| CCATGCAAGGACAATGTAAA+AGG | - | chr2_4:55978717-55978736 | Msa0336540:intron | 40.0% | |
| !! | TGCTCTTTTCAAGACATCCT+TGG | - | chr2_4:55978941-55978960 | Msa0336540:intron | 40.0% |
| ! | CTTGCAGGCATCAGAATTTT+AGG | + | chr2_4:55978969-55978988 | None:intergenic | 40.0% |
| GATATCCCATACCTATATGC+AGG | - | chr2_4:55979168-55979187 | Msa0336540:intron | 40.0% | |
| GAGAACCTGCATATAGGTAT+GGG | + | chr2_4:55979176-55979195 | None:intergenic | 40.0% | |
| AGAGAACCTGCATATAGGTA+TGG | + | chr2_4:55979177-55979196 | None:intergenic | 40.0% | |
| ! | TTTGTGTCGATATGCCAATC+TGG | + | chr2_4:55979247-55979266 | None:intergenic | 40.0% |
| AGCTAACTGGGTGACAATTT+CGG | + | chr2_4:55979272-55979291 | None:intergenic | 40.0% | |
| !! | CTGTTTTATAAGGCGCTATG+TGG | + | chr2_4:55979435-55979454 | None:intergenic | 40.0% |
| ! | CATCTGTCTCTAGAAAAGCT+GGG | + | chr2_4:55979617-55979636 | None:intergenic | 40.0% |
| ! | TCATCTGTCTCTAGAAAAGC+TGG | + | chr2_4:55979618-55979637 | None:intergenic | 40.0% |
| AGTTGTTGACGGCAAACCAA+CGG | - | chr2_4:55974548-55974567 | Msa0336540:three_prime_UTR | 45.0% | |
| !! | GTGAAAGAGGTCTTGTTTGG+AGG | + | chr2_4:55974717-55974736 | None:intergenic | 45.0% |
| !! | GAGGTGAAAGAGGTCTTGTT+TGG | + | chr2_4:55974720-55974739 | None:intergenic | 45.0% |
| AGCGTTTGATGAGGTGAAAG+AGG | + | chr2_4:55974730-55974749 | None:intergenic | 45.0% | |
| ! | AAGCACCAAAGCGTTTGATG+AGG | + | chr2_4:55974739-55974758 | None:intergenic | 45.0% |
| GAATGATTAGGAACCAGGGT+TGG | - | chr2_4:55974970-55974989 | Msa0336540:CDS | 45.0% | |
| AGCACCAATGGGAGAAAAGA+TGG | - | chr2_4:55975359-55975378 | Msa0336540:intron | 45.0% | |
| ACCAATGGGAGAAAAGATGG+TGG | - | chr2_4:55975362-55975381 | Msa0336540:intron | 45.0% | |
| ! | TCCACCATCTTTTCTCCCAT+TGG | + | chr2_4:55975366-55975385 | None:intergenic | 45.0% |
| AGACCATGCTTAGGTGGTTT+GGG | - | chr2_4:55975385-55975404 | Msa0336540:intron | 45.0% | |
| GAAGGTAGTCAGATCACTAG+TGG | - | chr2_4:55975464-55975483 | Msa0336540:intron | 45.0% | |
| AGTCAGATCACTAGTGGTAG+AGG | - | chr2_4:55975470-55975489 | Msa0336540:intron | 45.0% | |
| ! | AGAGCCTTATCCCACTAAGT+GGG | + | chr2_4:55975613-55975632 | None:intergenic | 45.0% |
| TTAGTGGGATAAGGCTCTCT+TGG | - | chr2_4:55975615-55975634 | Msa0336540:intron | 45.0% | |
| TGTGCCCGTAATTCATCTGA+AGG | + | chr2_4:55975923-55975942 | None:intergenic | 45.0% | |
| TGAGTTCTTTCAGCCAGTCA+AGG | - | chr2_4:55975955-55975974 | Msa0336540:intron | 45.0% | |
| TAGGTAACCTGTCGTCTTCT+TGG | - | chr2_4:55977152-55977171 | Msa0336540:intron | 45.0% | |
| TCTTCTTGGAGTGATCCTTG+AGG | - | chr2_4:55977166-55977185 | Msa0336540:intron | 45.0% | |
| TGCTACAACAGAGTAGCAAG+AGG | + | chr2_4:55978109-55978128 | None:intergenic | 45.0% | |
| CTTGTAGCGTTAGAAGAAGC+AGG | - | chr2_4:55978193-55978212 | Msa0336540:intron | 45.0% | |
| TGTAGCGTTAGAAGAAGCAG+GGG | - | chr2_4:55978195-55978214 | Msa0336540:intron | 45.0% | |
| GGTATTCACTTCAGGTGGTT+TGG | - | chr2_4:55978216-55978235 | Msa0336540:intron | 45.0% | |
| !! | CACTTCAGGTGGTTTGGTTA+AGG | - | chr2_4:55978222-55978241 | Msa0336540:intron | 45.0% |
| !! | AGGTGGTTTGGTTAAGGACA+AGG | - | chr2_4:55978228-55978247 | Msa0336540:intron | 45.0% |
| GAAGTTAACCACCTTCTTGC+TGG | - | chr2_4:55978296-55978315 | Msa0336540:intron | 45.0% | |
| GAGCATATACAGCCAGCAAA+TGG | + | chr2_4:55978926-55978945 | None:intergenic | 45.0% | |
| GCTGAAGAGAACCTGCATAT+AGG | + | chr2_4:55979182-55979201 | None:intergenic | 45.0% | |
| GCTAACTGGGTGACAATTTC+GGG | + | chr2_4:55979271-55979290 | None:intergenic | 45.0% | |
| !! | TGGAGCACTGAACACATTAG+CGG | + | chr2_4:55979467-55979486 | None:intergenic | 45.0% |
| TGTGTTCAGTGCTCCATCTT+TGG | - | chr2_4:55979471-55979490 | Msa0336540:intron | 45.0% | |
| !! | CTTTGATGGGTTCTCACACT+AGG | - | chr2_4:55979664-55979683 | Msa0336540:CDS | 45.0% |
| !!! | TTAATTTGTTATATTTTTTT+AGG | - | chr2_4:55976730-55976749 | Msa0336540:intron | 5.0% |
| AACCTCTGACGACAGCTCAT+AGG | - | chr2_4:55974522-55974541 | Msa0336540:three_prime_UTR | 50.0% | |
| CTCATAGGCGCAGTTGTTGA+CGG | - | chr2_4:55974537-55974556 | Msa0336540:three_prime_UTR | 50.0% | |
| CAAATTCCGGTGAGGCCTTA+CGG | - | chr2_4:55974651-55974670 | Msa0336540:three_prime_UTR | 50.0% | |
| ATCGTTGTCACCACCAGACA+CGG | + | chr2_4:55974690-55974709 | None:intergenic | 50.0% | |
| GTAGAGAGAGAGAGAGAGAG+AGG | + | chr2_4:55974802-55974821 | None:intergenic | 50.0% | |
| GTTGGGTGTGGGTAGAAACT+AGG | - | chr2_4:55975067-55975086 | Msa0336540:intron | 50.0% | |
| AGAGTTGGGGTAGCACCAAT+GGG | - | chr2_4:55975348-55975367 | Msa0336540:intron | 50.0% | |
| !! | AGATGGTGGAGACCATGCTT+AGG | - | chr2_4:55975376-55975395 | Msa0336540:intron | 50.0% |
| GAGACCATGCTTAGGTGGTT+TGG | - | chr2_4:55975384-55975403 | Msa0336540:intron | 50.0% | |
| ATGCCCAAACCACCTAAGCA+TGG | + | chr2_4:55975391-55975410 | None:intergenic | 50.0% | |
| ! | GAGAGCCTTATCCCACTAAG+TGG | + | chr2_4:55975614-55975633 | None:intergenic | 50.0% |
| GGATATTCGCACTATTGGGG+CGG | - | chr2_4:55975739-55975758 | Msa0336540:intron | 50.0% | |
| CTCCTAATCCTACACAAGGG+AGG | - | chr2_4:55975810-55975829 | Msa0336540:intron | 50.0% | |
| TGCCTCCCTTGTGTAGGATT+AGG | + | chr2_4:55975815-55975834 | None:intergenic | 50.0% | |
| ATCCTACACAAGGGAGGCAA+CGG | - | chr2_4:55975816-55975835 | Msa0336540:intron | 50.0% | |
| GGTGGTGCATCTAGTAATCC+TGG | - | chr2_4:55975848-55975867 | Msa0336540:intron | 50.0% | |
| GTGAGGCAGAAGTTGAGTGA+AGG | - | chr2_4:55976138-55976157 | Msa0336540:intron | 50.0% | |
| AGAATGTTAACCAGTGCCCC+CGG | - | chr2_4:55976753-55976772 | Msa0336540:intron | 50.0% | |
| TAGCTGCTTAACCAATGCCC+CGG | + | chr2_4:55976775-55976794 | None:intergenic | 50.0% | |
| GGATTCCTTAACAAGTGCCC+CGG | - | chr2_4:55976883-55976902 | Msa0336540:intron | 50.0% | |
| GATTCCTTAACAAGTGCCCC+GGG | - | chr2_4:55976884-55976903 | Msa0336540:intron | 50.0% | |
| ATTCCTTAACAAGTGCCCCG+GGG | - | chr2_4:55976885-55976904 | Msa0336540:intron | 50.0% | |
| GATCACTCCAAGAAGACGAC+AGG | + | chr2_4:55977162-55977181 | None:intergenic | 50.0% | |
| CCTCTGGACTACTTTCCTCA+AGG | + | chr2_4:55977184-55977203 | None:intergenic | 50.0% | |
| CCTTGAGGAAAGTAGTCCAG+AGG | - | chr2_4:55977181-55977200 | Msa0336540:intron | 50.0% | |
| AAGTAGTCCAGAGGAGCTTC+AGG | - | chr2_4:55977190-55977209 | Msa0336540:intron | 50.0% | |
| TTTCACACCTGAAGCTCCTC+TGG | + | chr2_4:55977200-55977219 | None:intergenic | 50.0% | |
| ATATCTCATGGACCGGGTTC+TGG | - | chr2_4:55977365-55977384 | Msa0336540:intron | 50.0% | |
| !! | GAAGCAGGGGTATTCACTTC+AGG | - | chr2_4:55978208-55978227 | Msa0336540:intron | 50.0% |
| AACCGTCATCATGACTAGGG+AGG | - | chr2_4:55978658-55978677 | Msa0336540:intron | 50.0% | |
| ACCGTCATCATGACTAGGGA+GGG | - | chr2_4:55978659-55978678 | Msa0336540:intron | 50.0% | |
| ! | CTCTTCAGCAGCACTGAGAA+TGG | - | chr2_4:55979193-55979212 | Msa0336540:intron | 50.0% |
| ! | GATGGGTTCTCACACTAGGT+TGG | - | chr2_4:55979668-55979687 | Msa0336540:CDS | 50.0% |
| TCATACACGTGCACAGAAGC+AGG | + | chr2_4:55979701-55979720 | None:intergenic | 50.0% | |
| GGCCTTACGGTGGTGAAACA+TGG | - | chr2_4:55974664-55974683 | Msa0336540:three_prime_UTR | 55.0% | |
| GGCCATGTTTCACCACCGTA+AGG | + | chr2_4:55974669-55974688 | None:intergenic | 55.0% | |
| TGGTGAAACATGGCCGTGTC+TGG | - | chr2_4:55974674-55974693 | Msa0336540:three_prime_UTR | 55.0% | |
| TGAAACATGGCCGTGTCTGG+TGG | - | chr2_4:55974677-55974696 | Msa0336540:three_prime_UTR | 55.0% | |
| GAGAGTTGGGGTAGCACCAA+TGG | - | chr2_4:55975347-55975366 | Msa0336540:intron | 55.0% | |
| TGGTGGAGACCATGCTTAGG+TGG | - | chr2_4:55975379-55975398 | Msa0336540:intron | 55.0% | |
| TTCCGTTGCCTCCCTTGTGT+AGG | + | chr2_4:55975821-55975840 | None:intergenic | 55.0% | |
| CACAAGGGAGGCAACGGAAA+AGG | - | chr2_4:55975822-55975841 | Msa0336540:intron | 55.0% | |
| AGGCAACGGAAAAGGCAAGG+TGG | - | chr2_4:55975830-55975849 | Msa0336540:intron | 55.0% | |
| CTCACTATCTGCCCCAAGGT+TGG | + | chr2_4:55976123-55976142 | None:intergenic | 55.0% | |
| CAACCTTGGGGCAGATAGTG+AGG | - | chr2_4:55976121-55976140 | Msa0336540:intron | 55.0% | |
| GAATGTTAACCAGTGCCCCC+GGG | - | chr2_4:55976754-55976773 | Msa0336540:intron | 55.0% | |
| AATGTTAACCAGTGCCCCCG+GGG | - | chr2_4:55976755-55976774 | Msa0336540:intron | 55.0% | |
| AGCTGCTTAACCAATGCCCC+GGG | + | chr2_4:55976774-55976793 | None:intergenic | 55.0% | |
| TTCCTTAACAAGTGCCCCGG+GGG | - | chr2_4:55976886-55976905 | Msa0336540:intron | 55.0% | |
| TCTTGTTAACCAGTGCCCCC+GGG | + | chr2_4:55976904-55976923 | None:intergenic | 55.0% | |
| ! | GTCTTGTTAACCAGTGCCCC+CGG | + | chr2_4:55976905-55976924 | None:intergenic | 55.0% |
| CGCTTTCGTCATCCAGAACC+CGG | + | chr2_4:55977380-55977399 | None:intergenic | 55.0% | |
| !! | GGTTCTGGATGACGAAAGCG+AGG | - | chr2_4:55977380-55977399 | Msa0336540:intron | 55.0% |
| !! | GCAGGGGTATTCACTTCAGG+TGG | - | chr2_4:55978211-55978230 | Msa0336540:intron | 55.0% |
| AACACTGCCCAGCAAGAAGG+TGG | + | chr2_4:55978307-55978326 | None:intergenic | 55.0% | |
| TGCAACACTGCCCAGCAAGA+AGG | + | chr2_4:55978310-55978329 | None:intergenic | 55.0% | |
| CCCCTCCCTAGTCATGATGA+CGG | + | chr2_4:55978663-55978682 | None:intergenic | 55.0% | |
| CCGTCATCATGACTAGGGAG+GGG | - | chr2_4:55978660-55978679 | Msa0336540:intron | 55.0% | |
| CGCCTATGAGCTGTCGTCAG+AGG | + | chr2_4:55974527-55974546 | None:intergenic | 60.0% | |
| ATTCCGGTGAGGCCTTACGG+TGG | - | chr2_4:55974654-55974673 | Msa0336540:three_prime_UTR | 60.0% | |
| TCACCACCGTAAGGCCTCAC+CGG | + | chr2_4:55974660-55974679 | None:intergenic | 60.0% | |
| GGGAGGCAACGGAAAAGGCA+AGG | - | chr2_4:55975827-55975846 | Msa0336540:intron | 60.0% | |
| CTGCCTCACTATCTGCCCCA+AGG | + | chr2_4:55976127-55976146 | None:intergenic | 60.0% | |
| CTGCTTAACCAATGCCCCGG+GGG | + | chr2_4:55976772-55976791 | None:intergenic | 60.0% | |
| GCTGCTTAACCAATGCCCCG+GGG | + | chr2_4:55976773-55976792 | None:intergenic | 60.0% | |
| CTTGTTAACCAGTGCCCCCG+GGG | + | chr2_4:55976903-55976922 | None:intergenic | 60.0% | |
| CGCACTATTGGGGCGGTAGC+TGG | - | chr2_4:55975746-55975765 | Msa0336540:intron | 65.0% | |
| ! | TGCCCCCGGGGCACTTGTTA+AGG | + | chr2_4:55976891-55976910 | None:intergenic | 65.0% |
| AACCAGTGCCCCCGGGGCAT+TGG | - | chr2_4:55976761-55976780 | Msa0336540:intron | 70.0% | |
| ! | AACCAATGCCCCGGGGGCAC+TGG | + | chr2_4:55976766-55976785 | None:intergenic | 70.0% |
| ! | AACAAGTGCCCCGGGGGCAC+TGG | - | chr2_4:55976892-55976911 | Msa0336540:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_4 | gene | 55974479 | 55979932 | 55974479 | ID=Msa0336540;Name=Msa0336540 |
| chr2_4 | mRNA | 55974479 | 55979932 | 55974479 | ID=Msa0336540-mRNA-1;Parent=Msa0336540;Name=Msa0336540-mRNA-1;_AED=0.10;_eAED=0.10;_QI=204|0.75|0.77|0.88|0.75|0.77|9|416|258 |
| chr2_4 | exon | 55974479 | 55974999 | 55974479 | ID=Msa0336540-mRNA-1:exon:17035;Parent=Msa0336540-mRNA-1 |
| chr2_4 | exon | 55975120 | 55975221 | 55975120 | ID=Msa0336540-mRNA-1:exon:17034;Parent=Msa0336540-mRNA-1 |
| chr2_4 | exon | 55976162 | 55976227 | 55976162 | ID=Msa0336540-mRNA-1:exon:17033;Parent=Msa0336540-mRNA-1 |
| chr2_4 | exon | 55977010 | 55977111 | 55977010 | ID=Msa0336540-mRNA-1:exon:17032;Parent=Msa0336540-mRNA-1 |
| chr2_4 | exon | 55977200 | 55977256 | 55977200 | ID=Msa0336540-mRNA-1:exon:17031;Parent=Msa0336540-mRNA-1 |
| chr2_4 | exon | 55978244 | 55978291 | 55978244 | ID=Msa0336540-mRNA-1:exon:17030;Parent=Msa0336540-mRNA-1 |
| chr2_4 | exon | 55978435 | 55978612 | 55978435 | ID=Msa0336540-mRNA-1:exon:17029;Parent=Msa0336540-mRNA-1 |
| chr2_4 | exon | 55979424 | 55979431 | 55979424 | ID=Msa0336540-mRNA-1:exon:17028;Parent=Msa0336540-mRNA-1 |
| chr2_4 | exon | 55979618 | 55979932 | 55979618 | ID=Msa0336540-mRNA-1:exon:17027;Parent=Msa0336540-mRNA-1 |
| chr2_4 | five_prime_UTR | 55979729 | 55979932 | 55979729 | ID=Msa0336540-mRNA-1:five_prime_utr;Parent=Msa0336540-mRNA-1 |
| chr2_4 | CDS | 55979618 | 55979728 | 55979618 | ID=Msa0336540-mRNA-1:cds;Parent=Msa0336540-mRNA-1 |
| chr2_4 | CDS | 55979424 | 55979431 | 55979424 | ID=Msa0336540-mRNA-1:cds;Parent=Msa0336540-mRNA-1 |
| chr2_4 | CDS | 55978435 | 55978612 | 55978435 | ID=Msa0336540-mRNA-1:cds;Parent=Msa0336540-mRNA-1 |
| chr2_4 | CDS | 55978244 | 55978291 | 55978244 | ID=Msa0336540-mRNA-1:cds;Parent=Msa0336540-mRNA-1 |
| chr2_4 | CDS | 55977200 | 55977256 | 55977200 | ID=Msa0336540-mRNA-1:cds;Parent=Msa0336540-mRNA-1 |
| chr2_4 | CDS | 55977010 | 55977111 | 55977010 | ID=Msa0336540-mRNA-1:cds;Parent=Msa0336540-mRNA-1 |
| chr2_4 | CDS | 55976162 | 55976227 | 55976162 | ID=Msa0336540-mRNA-1:cds;Parent=Msa0336540-mRNA-1 |
| chr2_4 | CDS | 55975120 | 55975221 | 55975120 | ID=Msa0336540-mRNA-1:cds;Parent=Msa0336540-mRNA-1 |
| chr2_4 | CDS | 55974895 | 55974999 | 55974895 | ID=Msa0336540-mRNA-1:cds;Parent=Msa0336540-mRNA-1 |
| chr2_4 | three_prime_UTR | 55974479 | 55974894 | 55974479 | ID=Msa0336540-mRNA-1:three_prime_utr;Parent=Msa0336540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
