Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660910 | XP_003597525.1 | 97.531 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 2.29e-177 | 497 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660910 | sp|Q96288|BBX24_ARATH | 57.874 | 254 | 90 | 7 | 1 | 243 | 1 | 248 | 8.07e-94 | 278 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|---|---|
| Msa0660910 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0660910 | Msa0739200 | 0.808614 | 2.840149e-50 | -8.615850e-47 |
| Msa0223780 | Msa0660910 | 0.951510 | 1.755579e-109 | -8.615850e-47 |
| Msa0396640 | Msa0660910 | 0.818304 | 2.101545e-52 | -8.615850e-47 |
| Msa0444170 | Msa0660910 | 0.816163 | 6.370114e-52 | -8.615850e-47 |
| Msa0350070 | Msa0660910 | 0.803047 | 4.199384e-49 | -8.615850e-47 |
| Msa0491730 | Msa0660910 | 0.808809 | 2.580015e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660910 | MtrunA17_Chr2g0329511 | 97.531 | 243 | 6 | 0 | 1 | 243 | 1 | 243 | 0.0 | 497 |
| Msa0660910 | MtrunA17_Chr4g0033641 | 69.672 | 244 | 69 | 3 | 1 | 243 | 1 | 240 | 3.66e-123 | 349 |
| Msa0660910 | MtrunA17_Chr2g0314671 | 39.583 | 192 | 81 | 3 | 1 | 157 | 1 | 192 | 1.38e-41 | 143 |
| Msa0660910 | MtrunA17_Chr1g0155811 | 35.338 | 266 | 142 | 6 | 1 | 242 | 1 | 260 | 6.75e-37 | 130 |
| Msa0660910 | MtrunA17_Chr3g0142221 | 34.529 | 223 | 123 | 5 | 1 | 217 | 1 | 206 | 9.22e-35 | 124 |
| Msa0660910 | MtrunA17_Chr3g0145061 | 53.211 | 109 | 50 | 1 | 1 | 108 | 1 | 109 | 6.80e-34 | 122 |
| Msa0660910 | MtrunA17_Chr4g0035651 | 48.214 | 112 | 57 | 1 | 1 | 111 | 1 | 112 | 1.24e-32 | 118 |
| Msa0660910 | MtrunA17_Chr5g0405151 | 47.959 | 98 | 48 | 2 | 1 | 98 | 1 | 95 | 1.36e-23 | 94.0 |
| Msa0660910 | MtrunA17_Chr3g0136701 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 1.94e-17 | 79.7 |
| Msa0660910 | MtrunA17_Chr7g0220721 | 40.217 | 92 | 46 | 1 | 5 | 96 | 26 | 108 | 9.43e-17 | 78.6 |
| Msa0660910 | MtrunA17_Chr7g0220721 | 50.000 | 50 | 25 | 0 | 5 | 54 | 69 | 118 | 3.87e-11 | 62.4 |
| Msa0660910 | MtrunA17_Chr1g0150471 | 40.217 | 92 | 46 | 1 | 5 | 96 | 6 | 88 | 2.25e-16 | 77.0 |
| Msa0660910 | MtrunA17_Chr4g0072871 | 36.957 | 92 | 49 | 1 | 5 | 96 | 22 | 104 | 2.97e-15 | 74.3 |
| Msa0660910 | MtrunA17_Chr7g0268691 | 39.796 | 98 | 49 | 2 | 5 | 102 | 20 | 107 | 3.49e-13 | 68.2 |
| Msa0660910 | MtrunA17_Chr5g0429341 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 6.33e-12 | 64.7 |
| Msa0660910 | MtrunA17_Chr3g0120711 | 35.417 | 96 | 52 | 2 | 1 | 96 | 1 | 86 | 5.41e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0660910 | AT1G06040.1 | 57.874 | 254 | 90 | 7 | 1 | 243 | 1 | 248 | 8.21e-95 | 278 |
| Msa0660910 | AT2G31380.1 | 57.724 | 246 | 93 | 5 | 1 | 243 | 1 | 238 | 1.25e-94 | 277 |
| Msa0660910 | AT1G06040.2 | 64.118 | 170 | 50 | 4 | 1 | 161 | 1 | 168 | 7.58e-69 | 210 |
| Msa0660910 | AT1G78600.1 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 1.36e-40 | 141 |
| Msa0660910 | AT1G78600.2 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 2.39e-40 | 141 |
| Msa0660910 | AT4G10240.1 | 52.632 | 114 | 44 | 2 | 1 | 108 | 1 | 110 | 2.20e-35 | 124 |
| Msa0660910 | AT1G75540.1 | 52.174 | 115 | 52 | 1 | 1 | 112 | 1 | 115 | 3.39e-34 | 125 |
| Msa0660910 | AT4G39070.1 | 51.887 | 106 | 50 | 1 | 1 | 105 | 1 | 106 | 3.10e-30 | 113 |
| Msa0660910 | AT2G21320.1 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 2.94e-23 | 92.8 |
| Msa0660910 | AT4G38960.1 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 7.76e-23 | 92.0 |
| Msa0660910 | AT4G38960.6 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 7.76e-23 | 92.0 |
| Msa0660910 | AT5G15850.1 | 42.391 | 92 | 44 | 1 | 5 | 96 | 12 | 94 | 3.68e-17 | 79.7 |
| Msa0660910 | AT2G24790.1 | 40.625 | 96 | 48 | 1 | 5 | 100 | 8 | 94 | 9.22e-17 | 78.2 |
| Msa0660910 | AT2G24790.2 | 41.304 | 92 | 45 | 1 | 5 | 96 | 8 | 90 | 1.13e-16 | 76.6 |
| Msa0660910 | AT3G02380.1 | 30.220 | 182 | 108 | 5 | 5 | 182 | 16 | 182 | 1.22e-15 | 75.5 |
| Msa0660910 | AT5G24930.1 | 39.583 | 96 | 49 | 1 | 5 | 100 | 6 | 92 | 1.66e-15 | 75.1 |
| Msa0660910 | AT5G15840.1 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 5.37e-15 | 73.9 |
| Msa0660910 | AT5G15840.2 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 7.17e-15 | 72.4 |
| Msa0660910 | AT2G33500.2 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 2.73e-12 | 66.2 |
| Msa0660910 | AT2G33500.1 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 2.81e-12 | 65.9 |
| Msa0660910 | AT1G28050.1 | 33.663 | 101 | 58 | 1 | 2 | 102 | 6 | 97 | 2.89e-12 | 66.2 |
| Msa0660910 | AT2G47890.1 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 5.64e-11 | 62.0 |
| Msa0660910 | AT2G47890.3 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.33e-11 | 61.6 |
Find 59 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTGGGAATAATTTATT+TGG | 0.153400 | 4_3:-72038688 | Msa0660910:three_prime_UTR |
| ACAATTTCAAAATCTTAATT+TGG | 0.164175 | 4_3:+72038606 | None:intergenic |
| GTGAGTTTGTTCGTCGTCTT+TGG | 0.207161 | 4_3:+72039554 | None:intergenic |
| TTGGGGTGTTGATGACTTAT+TGG | 0.211633 | 4_3:-72039454 | Msa0660910:CDS |
| GCCTGACTTTACACCTCCTT+GGG | 0.273748 | 4_3:-72039472 | Msa0660910:CDS |
| CACGGTTGCAATTTCATGTT+TGG | 0.282058 | 4_3:-72038397 | Msa0660910:three_prime_UTR |
| ACTTGATGTGTATTCCTCTT+AGG | 0.287737 | 4_3:+72039522 | None:intergenic |
| TTTGGTGGGATAGTAATAAT+AGG | 0.310885 | 4_3:-72038448 | Msa0660910:three_prime_UTR |
| TCACGTATGAGTTCAATTCT+AGG | 0.311669 | 4_3:+72038772 | None:intergenic |
| TTTGTTCTTAAAGTTTCATT+AGG | 0.326962 | 4_3:-72040922 | Msa0660910:five_prime_UTR |
| ATTGTATAATATAATATTCA+TGG | 0.339896 | 4_3:+72041019 | None:intergenic |
| AGTTTCTGTGTGATGAATAA+TGG | 0.342501 | 4_3:+72038821 | None:intergenic |
| CAGAAGGATTCCATGCAGTT+TGG | 0.346227 | 4_3:-72038949 | Msa0660910:CDS |
| TTTGGCGCAGTTAGATTTCA+TGG | 0.360694 | 4_3:+72039572 | None:intergenic |
| TGATTTGCAGAAAGGCTTCC+TGG | 0.363066 | 4_3:+72039627 | None:intergenic |
| TGCCTGACTTTACACCTCCT+TGG | 0.369148 | 4_3:-72039473 | Msa0660910:CDS |
| TACTTTACCGTGCCTGATCT+TGG | 0.385640 | 4_3:-72038724 | Msa0660910:CDS |
| TCAACTCAAAGTATTGTATT+CGG | 0.385669 | 4_3:+72038567 | None:intergenic |
| TGGTTGCTAGCATGAGTTAC+TGG | 0.389027 | 4_3:+72038841 | None:intergenic |
| ACTTGGCATATGTCACATCT+AGG | 0.395238 | 4_3:+72040716 | None:intergenic |
| GCACAGCAAATCATTGTTGC+AGG | 0.405281 | 4_3:+72040845 | None:intergenic |
| TTCCATGCAGTTTGGAGAGA+TGG | 0.460835 | 4_3:-72038941 | Msa0660910:CDS |
| CTAGAATGATACAAATAGTA+AGG | 0.464175 | 4_3:-72038481 | Msa0660910:three_prime_UTR |
| CAAAATATCAACTCAAGTAA+TGG | 0.465158 | 4_3:+72040941 | None:intergenic |
| CATTTGCTTCATCCAAGATC+AGG | 0.470656 | 4_3:+72038712 | None:intergenic |
| TATTGTATTCGGAGAGAAGT+AGG | 0.478824 | 4_3:+72038578 | None:intergenic |
| AGGAACTTCAGCTGCAGCCA+TGG | 0.492244 | 4_3:+72038870 | None:intergenic |
| TTTCATGGCAACTTGGATAC+CGG | 0.500273 | 4_3:+72039587 | None:intergenic |
| AAGTCAGGCACTTGCTGAGA+AGG | 0.502751 | 4_3:+72039486 | None:intergenic |
| TACCGGTGGCAAGGAAGCGC+TGG | 0.507223 | 4_3:+72039604 | None:intergenic |
| TGATGTGTATTCCTCTTAGG+TGG | 0.511604 | 4_3:+72039525 | None:intergenic |
| TTTGTTAGACATGTGTGACT+TGG | 0.512562 | 4_3:+72038798 | None:intergenic |
| CTCACTTGGAACCACCTAAG+AGG | 0.518615 | 4_3:-72039536 | Msa0660910:CDS |
| AGTTAGATTTCATGGCAACT+TGG | 0.524204 | 4_3:+72039580 | None:intergenic |
| AGCGCTGGTGATTTGCAGAA+AGG | 0.527070 | 4_3:+72039619 | None:intergenic |
| TGCAGTTTGGAGAGATGGAA+TGG | 0.544384 | 4_3:-72038936 | Msa0660910:CDS |
| CCCCAAGGAGGTGTAAAGTC+AGG | 0.545918 | 4_3:+72039471 | None:intergenic |
| TTCCATCTCTCCAAACTGCA+TGG | 0.555768 | 4_3:+72038939 | None:intergenic |
| CACCAGCGCTTCCTTGCCAC+CGG | 0.564595 | 4_3:-72039606 | Msa0660910:CDS |
| AGACGACGAACAAACTCACT+TGG | 0.565694 | 4_3:-72039550 | Msa0660910:CDS |
| GATGGAATGGTTCACAGAGG+AGG | 0.579999 | 4_3:-72038923 | Msa0660910:CDS |
| CTTGGCATATGTCACATCTA+GGG | 0.582493 | 4_3:+72040717 | None:intergenic |
| ATGGAATGGTTCACAGAGGA+GGG | 0.583205 | 4_3:-72038922 | Msa0660910:CDS |
| CAACTTGGATACCGGTGGCA+AGG | 0.586081 | 4_3:+72039595 | None:intergenic |
| AAGTATGTTTATAAGTTGTG+TGG | 0.591103 | 4_3:-72038545 | Msa0660910:three_prime_UTR |
| TGACTTCACTCAAGAAGCCA+TGG | 0.595191 | 4_3:-72038887 | Msa0660910:CDS |
| GACGAATCGATTCATTTACC+AGG | 0.619460 | 4_3:-72039645 | Msa0660910:CDS |
| GGATGAAGCAAATGATCATG+TGG | 0.623188 | 4_3:-72038703 | Msa0660910:exon |
| TACTCTTAAGAGATTTGACA+CGG | 0.623353 | 4_3:-72038415 | Msa0660910:three_prime_UTR |
| GCTTCATCCAAGATCAGGCA+CGG | 0.625901 | 4_3:+72038717 | None:intergenic |
| AGCTTGCAAGCAAACATCAG+AGG | 0.630860 | 4_3:-72040769 | Msa0660910:CDS |
| CATGGCAACTTGGATACCGG+TGG | 0.632565 | 4_3:+72039590 | None:intergenic |
| GCATGAGTTACTGGAAGCTG+AGG | 0.655267 | 4_3:+72038850 | None:intergenic |
| AATAAGTCATCAACACCCCA+AGG | 0.661072 | 4_3:+72039456 | None:intergenic |
| CCTGACTTTACACCTCCTTG+GGG | 0.669620 | 4_3:-72039471 | Msa0660910:CDS |
| GATGAAGCAAATGATCATGT+GGG | 0.669991 | 4_3:-72038702 | Msa0660910:exon |
| AGATAGGGCACTCTTCTGTG+AGG | 0.701688 | 4_3:-72039673 | Msa0660910:CDS |
| AAGTCATCAACACCCCAAGG+AGG | 0.755244 | 4_3:+72039459 | None:intergenic |
| AGAGATGGAATGGTTCACAG+AGG | 0.780922 | 4_3:-72038926 | Msa0660910:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTGTATAATATAATATTCA+TGG | + | chr4_3:72038462-72038481 | None:intergenic | 10.0% |
| !!! | TTATTTCTATAATAAAAGAT+AGG | - | chr4_3:72039264-72039283 | Msa0660910:intron | 10.0% |
| !!! | TATTTCTATAATAAAAGATA+GGG | - | chr4_3:72039265-72039284 | Msa0660910:intron | 10.0% |
| !!! | TTCATATTTTATTTTTCTCT+TGG | - | chr4_3:72038400-72038419 | Msa0660910:three_prime_UTR | 15.0% |
| !! | AAAAAAACAAGAGAAAATTA+AGG | + | chr4_3:72038800-72038819 | None:intergenic | 15.0% |
| !!! | TTTGACTATTTTATCTTTTA+GGG | + | chr4_3:72039469-72039488 | None:intergenic | 15.0% |
| !!! | ATTTGACTATTTTATCTTTT+AGG | + | chr4_3:72039470-72039489 | None:intergenic | 15.0% |
| !! | ACAATTTCAAAATCTTAATT+TGG | + | chr4_3:72040875-72040894 | None:intergenic | 15.0% |
| !! | TTTGTTCTTAAAGTTTCATT+AGG | - | chr4_3:72038556-72038575 | Msa0660910:three_prime_UTR | 20.0% |
| !! | AAAAGTTATAGTATACTTTC+TGG | - | chr4_3:72038977-72038996 | Msa0660910:intron | 20.0% |
| !! | ATCTTCATATAGTATAAGAT+AGG | + | chr4_3:72039035-72039054 | None:intergenic | 20.0% |
| !! | ACAAAATAAGTAACAGTTAT+AGG | + | chr4_3:72039719-72039738 | None:intergenic | 20.0% |
| !!! | TTGCAACTTTATTTCATAAT+TGG | - | chr4_3:72040083-72040102 | Msa0660910:intron | 20.0% |
| !! | TGAAATCGAATATTTAACTA+AGG | + | chr4_3:72040150-72040169 | None:intergenic | 20.0% |
| !!! | GAGACAAAAAACATTTTATA+AGG | + | chr4_3:72040188-72040207 | None:intergenic | 20.0% |
| !!! | TTACAAAACTACATGTTTTT+AGG | + | chr4_3:72040220-72040239 | None:intergenic | 20.0% |
| !!! | TTTTGTTATAATTGAGCTAA+GGG | + | chr4_3:72040396-72040415 | None:intergenic | 20.0% |
| !! | ATCATGTATCATTAGATAAT+AGG | + | chr4_3:72040429-72040448 | None:intergenic | 20.0% |
| ! | CAAAATATCAACTCAAGTAA+TGG | + | chr4_3:72038540-72038559 | None:intergenic | 25.0% |
| !! | TAAGGTGCTAATTAATTACT+TGG | + | chr4_3:72038782-72038801 | None:intergenic | 25.0% |
| ! | TTCATACATGAGAAACTAAT+AGG | - | chr4_3:72038879-72038898 | Msa0660910:CDS | 25.0% |
| ! | TACTATATGAAGATGAAATG+TGG | - | chr4_3:72039041-72039060 | Msa0660910:intron | 25.0% |
| !!! | TGTTGACTGAATTTTACTTT+TGG | - | chr4_3:72039073-72039092 | Msa0660910:intron | 25.0% |
| !! | TAACCTCTTTTATACACTTT+AGG | - | chr4_3:72039201-72039220 | Msa0660910:intron | 25.0% |
| !! | CAAATGTAGAAAGTTTTTCT+TGG | - | chr4_3:72039327-72039346 | Msa0660910:intron | 25.0% |
| ! | ACAAGTTAAAGAGCTTAAAA+AGG | + | chr4_3:72039421-72039440 | None:intergenic | 25.0% |
| ! | TTGAGTTTATCTACTAGTAT+TGG | + | chr4_3:72039635-72039654 | None:intergenic | 25.0% |
| !! | TCATATTTTGTGTTGAAGAT+AGG | - | chr4_3:72039789-72039808 | Msa0660910:intron | 25.0% |
| !! | CATATTTTGTGTTGAAGATA+GGG | - | chr4_3:72039790-72039809 | Msa0660910:intron | 25.0% |
| !! | TTACAAATTTTGTCAGTTCA+TGG | + | chr4_3:72040122-72040141 | None:intergenic | 25.0% |
| ! | AATTTGTACGAACTAAAATG+TGG | - | chr4_3:72040238-72040257 | Msa0660910:intron | 25.0% |
| !!! | CTTTTGTTATAATTGAGCTA+AGG | + | chr4_3:72040397-72040416 | None:intergenic | 25.0% |
| ! | CTTAGCTCAATTATAACAAA+AGG | - | chr4_3:72040395-72040414 | Msa0660910:intron | 25.0% |
| ! | TGAAGCACAATAAGAAAAAA+AGG | + | chr4_3:72040511-72040530 | None:intergenic | 25.0% |
| ! | TCATGTGGGAATAATTTATT+TGG | - | chr4_3:72040790-72040809 | Msa0660910:CDS | 25.0% |
| !!! | TCAACTCAAAGTATTGTATT+CGG | + | chr4_3:72040914-72040933 | None:intergenic | 25.0% |
| ! | AAGTATGTTTATAAGTTGTG+TGG | - | chr4_3:72040933-72040952 | Msa0660910:five_prime_UTR | 25.0% |
| ! | CTAGAATGATACAAATAGTA+AGG | - | chr4_3:72040997-72041016 | Msa0660910:five_prime_UTR | 25.0% |
| ! | CAAACAACATTGTCCATTTT+TGG | - | chr4_3:72038483-72038502 | Msa0660910:three_prime_UTR | 30.0% |
| !! | GAAGTGTTTTAAGCCAAAAA+TGG | + | chr4_3:72038499-72038518 | None:intergenic | 30.0% |
| AAAGTTAAGACAACATACCT+TGG | + | chr4_3:72038909-72038928 | None:intergenic | 30.0% | |
| ! | TAACTGTTGAGATCTAGTTT+AGG | - | chr4_3:72039117-72039136 | Msa0660910:intron | 30.0% |
| AAGCCTAAAGTGTATAAAAG+AGG | + | chr4_3:72039207-72039226 | None:intergenic | 30.0% | |
| ACTGTTTACATAAGTCATTC+CGG | - | chr4_3:72039510-72039529 | Msa0660910:CDS | 30.0% | |
| TTTCACCTGTATGTACAAAT+AGG | - | chr4_3:72039754-72039773 | Msa0660910:intron | 30.0% | |
| ATAAAACAACAAAGACAGCT+AGG | - | chr4_3:72040299-72040318 | Msa0660910:intron | 30.0% | |
| TAAAACAACAAAGACAGCTA+GGG | - | chr4_3:72040300-72040319 | Msa0660910:intron | 30.0% | |
| ! | TTTTCTTATTGTGCTTCAGA+AGG | - | chr4_3:72040513-72040532 | Msa0660910:intron | 30.0% |
| AGTTTCTGTGTGATGAATAA+TGG | + | chr4_3:72040660-72040679 | None:intergenic | 30.0% | |
| TTTGGTGGGATAGTAATAAT+AGG | - | chr4_3:72041030-72041049 | Msa0660910:five_prime_UTR | 30.0% | |
| TACTCTTAAGAGATTTGACA+CGG | - | chr4_3:72041063-72041082 | Msa0660910:five_prime_UTR | 30.0% | |
| AGAAACTAATAGGTCATCCA+AGG | - | chr4_3:72038889-72038908 | Msa0660910:CDS | 35.0% | |
| !! | TGAATTTTACTTTTGGCCCT+TGG | - | chr4_3:72039080-72039099 | Msa0660910:intron | 35.0% |
| AATGTTAACTTATGCCCTTG+AGG | - | chr4_3:72039289-72039308 | Msa0660910:intron | 35.0% | |
| CTTCTTAACTTATGCCTCAA+GGG | + | chr4_3:72039306-72039325 | None:intergenic | 35.0% | |
| TCTTCTTAACTTATGCCTCA+AGG | + | chr4_3:72039307-72039326 | None:intergenic | 35.0% | |
| !! | GCTTATTTTCATAAGCTCTC+CGG | + | chr4_3:72039532-72039551 | None:intergenic | 35.0% |
| GTACATACAGGTGAAACAAA+AGG | + | chr4_3:72039750-72039769 | None:intergenic | 35.0% | |
| CTTGTCCTATTTGTACATAC+AGG | + | chr4_3:72039762-72039781 | None:intergenic | 35.0% | |
| CTGTATGTACAAATAGGACA+AGG | - | chr4_3:72039760-72039779 | Msa0660910:intron | 35.0% | |
| AGTTAGATTTCATGGCAACT+TGG | + | chr4_3:72039901-72039920 | None:intergenic | 35.0% | |
| ACTTGATGTGTATTCCTCTT+AGG | + | chr4_3:72039959-72039978 | None:intergenic | 35.0% | |
| TTTGTTAGACATGTGTGACT+TGG | + | chr4_3:72040683-72040702 | None:intergenic | 35.0% | |
| TCACGTATGAGTTCAATTCT+AGG | + | chr4_3:72040709-72040728 | None:intergenic | 35.0% | |
| GATGAAGCAAATGATCATGT+GGG | - | chr4_3:72040776-72040795 | Msa0660910:CDS | 35.0% | |
| TATTGTATTCGGAGAGAAGT+AGG | + | chr4_3:72040903-72040922 | None:intergenic | 35.0% | |
| ! | TAGTAAGGCTCGTATCTTTT+TGG | - | chr4_3:72041012-72041031 | Msa0660910:five_prime_UTR | 35.0% |
| CTTGGCATATGTCACATCTA+GGG | + | chr4_3:72038764-72038783 | None:intergenic | 40.0% | |
| ACTTGGCATATGTCACATCT+AGG | + | chr4_3:72038765-72038784 | None:intergenic | 40.0% | |
| TAACCAAGCACAAAGTCCAA+GGG | + | chr4_3:72039099-72039118 | None:intergenic | 40.0% | |
| TTAACCAAGCACAAAGTCCA+AGG | + | chr4_3:72039100-72039119 | None:intergenic | 40.0% | |
| !! | CTCTTTAACTTGTGCCCTTA+GGG | - | chr4_3:72039428-72039447 | Msa0660910:CDS | 40.0% |
| !! | CATGTTAACTTGTGCCCTAA+GGG | + | chr4_3:72039445-72039464 | None:intergenic | 40.0% |
| !! | TCATGTTAACTTGTGCCCTA+AGG | + | chr4_3:72039446-72039465 | None:intergenic | 40.0% |
| !! | GACTGTTTGAAGGCATGTTT+TGG | + | chr4_3:72039603-72039622 | None:intergenic | 40.0% |
| GCATTTGTGAGACTGTTTGA+AGG | + | chr4_3:72039613-72039632 | None:intergenic | 40.0% | |
| CATACAGGTGAAACAAAAGG+AGG | + | chr4_3:72039747-72039766 | None:intergenic | 40.0% | |
| ! | GACGAATCGATTCATTTACC+AGG | - | chr4_3:72039833-72039852 | Msa0660910:intron | 40.0% |
| TTTCATGGCAACTTGGATAC+CGG | + | chr4_3:72039894-72039913 | None:intergenic | 40.0% | |
| TTTGGCGCAGTTAGATTTCA+TGG | + | chr4_3:72039909-72039928 | None:intergenic | 40.0% | |
| TGATGTGTATTCCTCTTAGG+TGG | + | chr4_3:72039956-72039975 | None:intergenic | 40.0% | |
| AATAAGTCATCAACACCCCA+AGG | + | chr4_3:72040025-72040044 | None:intergenic | 40.0% | |
| !! | TTGGGGTGTTGATGACTTAT+TGG | - | chr4_3:72040024-72040043 | Msa0660910:intron | 40.0% |
| CATTTGCTTCATCCAAGATC+AGG | + | chr4_3:72040769-72040788 | None:intergenic | 40.0% | |
| GGATGAAGCAAATGATCATG+TGG | - | chr4_3:72040775-72040794 | Msa0660910:CDS | 40.0% | |
| ! | TAAGGCTCGTATCTTTTTGG+TGG | - | chr4_3:72041015-72041034 | Msa0660910:five_prime_UTR | 40.0% |
| !! | AAGGCTCGTATCTTTTTGGT+GGG | - | chr4_3:72041016-72041035 | Msa0660910:five_prime_UTR | 40.0% |
| CACGGTTGCAATTTCATGTT+TGG | - | chr4_3:72041081-72041100 | Msa0660910:five_prime_UTR | 40.0% | |
| GCACAGCAAATCATTGTTGC+AGG | + | chr4_3:72038636-72038655 | None:intergenic | 45.0% | |
| AGCTTGCAAGCAAACATCAG+AGG | - | chr4_3:72038709-72038728 | Msa0660910:exon | 45.0% | |
| ! | CTTTCTGGAGATGTAGTGTG+AGG | - | chr4_3:72038992-72039011 | Msa0660910:intron | 45.0% |
| !! | GCTCTTTAACTTGTGCCCTT+AGG | - | chr4_3:72039427-72039446 | Msa0660910:CDS | 45.0% |
| ! | TGATTTGCAGAAAGGCTTCC+TGG | + | chr4_3:72039854-72039873 | None:intergenic | 45.0% |
| ! | GTGAGTTTGTTCGTCGTCTT+TGG | + | chr4_3:72039927-72039946 | None:intergenic | 45.0% |
| AGACGACGAACAAACTCACT+TGG | - | chr4_3:72039928-72039947 | Msa0660910:intron | 45.0% | |
| CAGAAGGATTCCATGCAGTT+TGG | - | chr4_3:72040529-72040548 | Msa0660910:intron | 45.0% | |
| TTCCATGCAGTTTGGAGAGA+TGG | - | chr4_3:72040537-72040556 | Msa0660910:intron | 45.0% | |
| TTCCATCTCTCCAAACTGCA+TGG | + | chr4_3:72040542-72040561 | None:intergenic | 45.0% | |
| TGCAGTTTGGAGAGATGGAA+TGG | - | chr4_3:72040542-72040561 | Msa0660910:intron | 45.0% | |
| AGAGATGGAATGGTTCACAG+AGG | - | chr4_3:72040552-72040571 | Msa0660910:intron | 45.0% | |
| ATGGAATGGTTCACAGAGGA+GGG | - | chr4_3:72040556-72040575 | Msa0660910:intron | 45.0% | |
| ! | TTCACAGAGGAGGGTCTTTT+TGG | - | chr4_3:72040565-72040584 | Msa0660910:intron | 45.0% |
| TGACTTCACTCAAGAAGCCA+TGG | - | chr4_3:72040591-72040610 | Msa0660910:intron | 45.0% | |
| TGGTTGCTAGCATGAGTTAC+TGG | + | chr4_3:72040640-72040659 | None:intergenic | 45.0% | |
| TACTTTACCGTGCCTGATCT+TGG | - | chr4_3:72040754-72040773 | Msa0660910:CDS | 45.0% | |
| ! | AGATAGGGCACTCTTCTGTG+AGG | - | chr4_3:72039805-72039824 | Msa0660910:intron | 50.0% |
| !! | AGCGCTGGTGATTTGCAGAA+AGG | + | chr4_3:72039862-72039881 | None:intergenic | 50.0% |
| CTCACTTGGAACCACCTAAG+AGG | - | chr4_3:72039942-72039961 | Msa0660910:intron | 50.0% | |
| ! | AAGTCAGGCACTTGCTGAGA+AGG | + | chr4_3:72039995-72040014 | None:intergenic | 50.0% |
| TGCCTGACTTTACACCTCCT+TGG | - | chr4_3:72040005-72040024 | Msa0660910:intron | 50.0% | |
| GCCTGACTTTACACCTCCTT+GGG | - | chr4_3:72040006-72040025 | Msa0660910:intron | 50.0% | |
| CCTGACTTTACACCTCCTTG+GGG | - | chr4_3:72040007-72040026 | Msa0660910:intron | 50.0% | |
| AAGTCATCAACACCCCAAGG+AGG | + | chr4_3:72040022-72040041 | None:intergenic | 50.0% | |
| GATGGAATGGTTCACAGAGG+AGG | - | chr4_3:72040555-72040574 | Msa0660910:intron | 50.0% | |
| GCATGAGTTACTGGAAGCTG+AGG | + | chr4_3:72040631-72040650 | None:intergenic | 50.0% | |
| GCTTCATCCAAGATCAGGCA+CGG | + | chr4_3:72040764-72040783 | None:intergenic | 50.0% | |
| TGGCCCTTGGACTTTGTGCT+TGG | - | chr4_3:72039093-72039112 | Msa0660910:intron | 55.0% | |
| CAACTTGGATACCGGTGGCA+AGG | + | chr4_3:72039886-72039905 | None:intergenic | 55.0% | |
| CATGGCAACTTGGATACCGG+TGG | + | chr4_3:72039891-72039910 | None:intergenic | 55.0% | |
| ! | CCCCAAGGAGGTGTAAAGTC+AGG | + | chr4_3:72040010-72040029 | None:intergenic | 55.0% |
| AGGAACTTCAGCTGCAGCCA+TGG | + | chr4_3:72040611-72040630 | None:intergenic | 55.0% | |
| CACCAGCGCTTCCTTGCCAC+CGG | - | chr4_3:72039872-72039891 | Msa0660910:intron | 65.0% | |
| ! | TACCGGTGGCAAGGAAGCGC+TGG | + | chr4_3:72039877-72039896 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 72038390 | 72041110 | 72038390 | ID=Msa0660910;Name=Msa0660910 |
| chr4_3 | mRNA | 72038390 | 72041110 | 72038390 | ID=Msa0660910-mRNA-1;Parent=Msa0660910;Name=Msa0660910-mRNA-1;_AED=0.22;_eAED=0.22;_QI=210|1|1|1|1|1|3|330|243 |
| chr4_3 | exon | 72038390 | 72038968 | 72038390 | ID=Msa0660910-mRNA-1:exon:21617;Parent=Msa0660910-mRNA-1 |
| chr4_3 | exon | 72039425 | 72039724 | 72039425 | ID=Msa0660910-mRNA-1:exon:21616;Parent=Msa0660910-mRNA-1 |
| chr4_3 | exon | 72040718 | 72041110 | 72040718 | ID=Msa0660910-mRNA-1:exon:21615;Parent=Msa0660910-mRNA-1 |
| chr4_3 | five_prime_UTR | 72040901 | 72041110 | 72040901 | ID=Msa0660910-mRNA-1:five_prime_utr;Parent=Msa0660910-mRNA-1 |
| chr4_3 | CDS | 72040718 | 72040900 | 72040718 | ID=Msa0660910-mRNA-1:cds;Parent=Msa0660910-mRNA-1 |
| chr4_3 | CDS | 72039425 | 72039724 | 72039425 | ID=Msa0660910-mRNA-1:cds;Parent=Msa0660910-mRNA-1 |
| chr4_3 | CDS | 72038720 | 72038968 | 72038720 | ID=Msa0660910-mRNA-1:cds;Parent=Msa0660910-mRNA-1 |
| chr4_3 | three_prime_UTR | 72038390 | 72038719 | 72038390 | ID=Msa0660910-mRNA-1:three_prime_utr;Parent=Msa0660910-mRNA-1 |
| Gene Sequence |
| Protein sequence |
