Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223780 | XP_003597525.1 | 97.942 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 4.67e-178 | 498 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223780 | sp|Q96288|BBX24_ARATH | 57.480 | 254 | 91 | 7 | 1 | 243 | 1 | 248 | 2.90e-93 | 277 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223780 | G7IHV4 | 97.942 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 2.23e-178 | 498 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa0223780 | TR | Others |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0026280 | Msa0223780 | 0.811231 | 7.762704e-51 | -8.615850e-47 |
| Msa0074140 | Msa0223780 | 0.813964 | 1.960138e-51 | -8.615850e-47 |
| Msa0074180 | Msa0223780 | 0.826380 | 2.800348e-54 | -8.615850e-47 |
| Msa0116590 | Msa0223780 | 0.809096 | 2.239853e-50 | -8.615850e-47 |
| Msa0192290 | Msa0223780 | -0.805578 | 1.247833e-49 | -8.615850e-47 |
| Msa0223780 | Msa0232290 | 0.813893 | 2.032887e-51 | -8.615850e-47 |
| Msa0223780 | Msa0264960 | 0.856554 | 2.974108e-62 | -8.615850e-47 |
| Msa0223780 | Msa0301260 | -0.819177 | 1.331640e-52 | -8.615850e-47 |
| Msa0223780 | Msa0303010 | 0.857100 | 2.054488e-62 | -8.615850e-47 |
| Msa0223780 | Msa0350070 | 0.869319 | 3.385501e-66 | -8.615850e-47 |
| Msa0223780 | Msa0396640 | 0.880430 | 5.526869e-70 | -8.615850e-47 |
| Msa0223780 | Msa0402510 | 0.863758 | 1.980432e-64 | -8.615850e-47 |
| Msa0223780 | Msa0444170 | 0.876893 | 9.717374e-69 | -8.615850e-47 |
| Msa0223780 | Msa0491730 | 0.880282 | 6.239368e-70 | -8.615850e-47 |
| Msa0223780 | Msa0497160 | 0.845117 | 4.959150e-59 | -8.615850e-47 |
| Msa0223780 | Msa0660910 | 0.951510 | 1.755579e-109 | -8.615850e-47 |
| Msa0223780 | Msa0664210 | 0.807850 | 4.132477e-50 | -8.615850e-47 |
| Msa0223780 | Msa0664270 | 0.822172 | 2.730472e-53 | -8.615850e-47 |
| Msa0223780 | Msa0739200 | 0.821681 | 3.547837e-53 | -8.615850e-47 |
| Msa0223780 | Msa0792480 | 0.807709 | 4.428195e-50 | -8.615850e-47 |
| Msa0223780 | Msa1064450 | 0.826650 | 2.414215e-54 | -8.615850e-47 |
| Msa0223780 | Msa1139800 | 0.801604 | 8.325271e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223780 | MtrunA17_Chr2g0329511 | 97.942 | 243 | 5 | 0 | 1 | 243 | 1 | 243 | 0.0 | 498 |
| Msa0223780 | MtrunA17_Chr4g0033641 | 69.672 | 244 | 69 | 3 | 1 | 243 | 1 | 240 | 3.50e-123 | 349 |
| Msa0223780 | MtrunA17_Chr2g0314671 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 1.18e-41 | 144 |
| Msa0223780 | MtrunA17_Chr1g0155811 | 35.338 | 266 | 142 | 6 | 1 | 242 | 1 | 260 | 7.11e-37 | 130 |
| Msa0223780 | MtrunA17_Chr3g0142221 | 34.529 | 223 | 123 | 5 | 1 | 217 | 1 | 206 | 8.84e-35 | 124 |
| Msa0223780 | MtrunA17_Chr3g0145061 | 53.211 | 109 | 50 | 1 | 1 | 108 | 1 | 109 | 6.45e-34 | 122 |
| Msa0223780 | MtrunA17_Chr4g0035651 | 48.214 | 112 | 57 | 1 | 1 | 111 | 1 | 112 | 1.17e-32 | 118 |
| Msa0223780 | MtrunA17_Chr5g0405151 | 47.959 | 98 | 48 | 2 | 1 | 98 | 1 | 95 | 1.18e-23 | 94.0 |
| Msa0223780 | MtrunA17_Chr3g0136701 | 42.708 | 96 | 46 | 1 | 5 | 100 | 6 | 92 | 1.98e-17 | 79.3 |
| Msa0223780 | MtrunA17_Chr7g0220721 | 40.217 | 92 | 46 | 1 | 5 | 96 | 26 | 108 | 8.65e-17 | 78.6 |
| Msa0223780 | MtrunA17_Chr7g0220721 | 50.000 | 50 | 25 | 0 | 5 | 54 | 69 | 118 | 3.56e-11 | 62.4 |
| Msa0223780 | MtrunA17_Chr1g0150471 | 40.217 | 92 | 46 | 1 | 5 | 96 | 6 | 88 | 2.56e-16 | 76.6 |
| Msa0223780 | MtrunA17_Chr4g0072871 | 36.957 | 92 | 49 | 1 | 5 | 96 | 22 | 104 | 3.12e-15 | 74.3 |
| Msa0223780 | MtrunA17_Chr7g0268691 | 39.796 | 98 | 49 | 2 | 5 | 102 | 20 | 107 | 4.10e-13 | 68.2 |
| Msa0223780 | MtrunA17_Chr5g0429341 | 33.333 | 96 | 55 | 1 | 1 | 96 | 1 | 87 | 6.57e-12 | 64.7 |
| Msa0223780 | MtrunA17_Chr3g0120711 | 35.417 | 96 | 52 | 2 | 1 | 96 | 1 | 86 | 5.83e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0223780 | AT1G06040.1 | 57.480 | 254 | 91 | 7 | 1 | 243 | 1 | 248 | 2.95e-94 | 277 |
| Msa0223780 | AT2G31380.1 | 57.317 | 246 | 94 | 5 | 1 | 243 | 1 | 238 | 4.20e-94 | 276 |
| Msa0223780 | AT1G06040.2 | 63.529 | 170 | 51 | 4 | 1 | 161 | 1 | 168 | 2.80e-68 | 208 |
| Msa0223780 | AT1G78600.1 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 1.16e-40 | 141 |
| Msa0223780 | AT1G78600.2 | 57.407 | 108 | 46 | 0 | 1 | 108 | 1 | 108 | 2.14e-40 | 141 |
| Msa0223780 | AT4G10240.1 | 52.632 | 114 | 44 | 2 | 1 | 108 | 1 | 110 | 2.10e-35 | 124 |
| Msa0223780 | AT1G75540.1 | 52.174 | 115 | 52 | 1 | 1 | 112 | 1 | 115 | 3.69e-34 | 125 |
| Msa0223780 | AT4G39070.1 | 51.887 | 106 | 50 | 1 | 1 | 105 | 1 | 106 | 2.59e-30 | 113 |
| Msa0223780 | AT2G21320.1 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 2.56e-23 | 93.2 |
| Msa0223780 | AT4G38960.1 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 6.63e-23 | 92.4 |
| Msa0223780 | AT4G38960.6 | 48.980 | 98 | 47 | 2 | 1 | 98 | 1 | 95 | 6.63e-23 | 92.4 |
| Msa0223780 | AT5G15850.1 | 42.391 | 92 | 44 | 1 | 5 | 96 | 12 | 94 | 3.68e-17 | 79.7 |
| Msa0223780 | AT2G24790.1 | 40.625 | 96 | 48 | 1 | 5 | 100 | 8 | 94 | 9.69e-17 | 78.2 |
| Msa0223780 | AT2G24790.2 | 41.304 | 92 | 45 | 1 | 5 | 96 | 8 | 90 | 1.13e-16 | 76.6 |
| Msa0223780 | AT3G02380.1 | 30.220 | 182 | 108 | 5 | 5 | 182 | 16 | 182 | 1.24e-15 | 75.5 |
| Msa0223780 | AT5G24930.1 | 39.583 | 96 | 49 | 1 | 5 | 100 | 6 | 92 | 1.60e-15 | 75.5 |
| Msa0223780 | AT5G15840.1 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 6.15e-15 | 73.6 |
| Msa0223780 | AT5G15840.2 | 32.520 | 123 | 71 | 2 | 5 | 124 | 20 | 133 | 7.69e-15 | 72.4 |
| Msa0223780 | AT2G33500.1 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.30e-12 | 65.9 |
| Msa0223780 | AT2G33500.2 | 34.000 | 100 | 57 | 1 | 3 | 102 | 10 | 100 | 3.42e-12 | 65.9 |
| Msa0223780 | AT1G28050.1 | 33.663 | 101 | 58 | 1 | 2 | 102 | 6 | 97 | 3.43e-12 | 65.9 |
| Msa0223780 | AT2G47890.1 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 6.26e-11 | 62.0 |
| Msa0223780 | AT2G47890.3 | 37.647 | 85 | 44 | 1 | 5 | 89 | 13 | 88 | 7.03e-11 | 61.6 |
Find 57 sgRNAs with CRISPR-Local
Find 106 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTGGGAATAATTTATT+TGG | 0.153400 | 2_1:-73441941 | Msa0223780:three_prime_UTR |
| ACAATTTCAAAATCTTAATT+TGG | 0.164175 | 2_1:+73441859 | None:intergenic |
| GTGAGTTTGTTCGTCGTCTT+TGG | 0.207161 | 2_1:+73442716 | None:intergenic |
| TTGGGGTGTTGATGACTTAT+TGG | 0.243521 | 2_1:-73442616 | Msa0223780:CDS |
| CACGGTTGCAATTTCATGTT+TGG | 0.283927 | 2_1:-73441650 | Msa0223780:three_prime_UTR |
| ACTTGATGTGTATTCCTCTT+AGG | 0.287737 | 2_1:+73442684 | None:intergenic |
| TTTGTATTGTATAATATTCA+TGG | 0.298234 | 2_1:+73443983 | None:intergenic |
| TTTGGTGGGATAGTAATAAT+AGG | 0.310885 | 2_1:-73441701 | Msa0223780:three_prime_UTR |
| TCACGTATGAGTTCAATTCT+AGG | 0.311669 | 2_1:+73442025 | None:intergenic |
| TTTGTTCTTAAAGTTTCATT+AGG | 0.326962 | 2_1:-73443891 | Msa0223780:five_prime_UTR |
| AGTTTCTGTGTGATGAATAA+TGG | 0.342501 | 2_1:+73442074 | None:intergenic |
| CAGAAGGATTCCATGCAGTT+TGG | 0.346227 | 2_1:-73442202 | Msa0223780:CDS |
| TTTGGCGCAGTTAGATTTCA+TGG | 0.360694 | 2_1:+73442734 | None:intergenic |
| TGATTTGCAGAAAGGCTTCC+TGG | 0.363066 | 2_1:+73442789 | None:intergenic |
| TACTTTACCGTGCCTGATCT+TGG | 0.385640 | 2_1:-73441977 | Msa0223780:CDS |
| TCAACTCAAAGTATTGTATT+CGG | 0.385669 | 2_1:+73441820 | None:intergenic |
| TGGTTGCTAGCATGAGTTAC+TGG | 0.389027 | 2_1:+73442094 | None:intergenic |
| ACTTGGCATATGTCACATCT+AGG | 0.395238 | 2_1:+73443685 | None:intergenic |
| GCACAACAAATCATTGTTGC+AGG | 0.412099 | 2_1:+73443814 | None:intergenic |
| TTCCATGCAGTTTGGAGAGA+TGG | 0.460835 | 2_1:-73442194 | Msa0223780:CDS |
| CTAGAATGATACAAATAGTA+AGG | 0.464175 | 2_1:-73441734 | Msa0223780:three_prime_UTR |
| CAAAATATCAACTCAAGTAA+TGG | 0.465158 | 2_1:+73443910 | None:intergenic |
| CATTTGCTTCATCCAAGATC+AGG | 0.470656 | 2_1:+73441965 | None:intergenic |
| TATTGTATTCGGAGAGAAGT+AGG | 0.478824 | 2_1:+73441831 | None:intergenic |
| AGGAACTTCAGCTGCAGCCA+TGG | 0.492244 | 2_1:+73442123 | None:intergenic |
| TTTCATGGCAACTTGGATAC+CGG | 0.500273 | 2_1:+73442749 | None:intergenic |
| AAGTCAGGCACTTGCTGAGA+AGG | 0.502751 | 2_1:+73442648 | None:intergenic |
| TACCGGTGGCAAGGAAGCGC+TGG | 0.507223 | 2_1:+73442766 | None:intergenic |
| TGATGTGTATTCCTCTTAGG+TGG | 0.511604 | 2_1:+73442687 | None:intergenic |
| TTTGTTAGACATGTGTGACT+TGG | 0.512562 | 2_1:+73442051 | None:intergenic |
| CTCACTTGGAACCACCTAAG+AGG | 0.518615 | 2_1:-73442698 | Msa0223780:CDS |
| AGTTAGATTTCATGGCAACT+TGG | 0.524204 | 2_1:+73442742 | None:intergenic |
| AGCGCTGGTGATTTGCAGAA+AGG | 0.527070 | 2_1:+73442781 | None:intergenic |
| TGCAGTTTGGAGAGATGGAA+TGG | 0.544384 | 2_1:-73442189 | Msa0223780:CDS |
| TTCCATCTCTCCAAACTGCA+TGG | 0.555768 | 2_1:+73442192 | None:intergenic |
| CACCAGCGCTTCCTTGCCAC+CGG | 0.564595 | 2_1:-73442768 | Msa0223780:CDS |
| AGACGACGAACAAACTCACT+TGG | 0.565694 | 2_1:-73442712 | Msa0223780:CDS |
| GATGGAATGGTTCACAGAGG+AGG | 0.579999 | 2_1:-73442176 | Msa0223780:CDS |
| CTTGGCATATGTCACATCTA+GGG | 0.582493 | 2_1:+73443686 | None:intergenic |
| ATGGAATGGTTCACAGAGGA+GGG | 0.583205 | 2_1:-73442175 | Msa0223780:CDS |
| CAACTTGGATACCGGTGGCA+AGG | 0.586081 | 2_1:+73442757 | None:intergenic |
| TGACTTCACTCAAGAAGCCA+TGG | 0.590547 | 2_1:-73442140 | Msa0223780:CDS |
| AAGTATGTTTATAAGTTGTG+TGG | 0.591103 | 2_1:-73441798 | Msa0223780:three_prime_UTR |
| AATAAGTCATCAACACCCCA+AGG | 0.619248 | 2_1:+73442618 | None:intergenic |
| GACGAATCGATTCATTTACC+AGG | 0.619460 | 2_1:-73442807 | Msa0223780:CDS |
| GGATGAAGCAAATGATCATG+TGG | 0.623188 | 2_1:-73441956 | Msa0223780:exon |
| GCTTCATCCAAGATCAGGCA+CGG | 0.625901 | 2_1:+73441970 | None:intergenic |
| AGCTTGCAAGCAAACATCAG+AGG | 0.630860 | 2_1:-73443738 | Msa0223780:CDS |
| CATGGCAACTTGGATACCGG+TGG | 0.632565 | 2_1:+73442752 | None:intergenic |
| TACTCTTAAGAGATTTAACA+CGG | 0.635120 | 2_1:-73441668 | Msa0223780:three_prime_UTR |
| ATAAGTCATCAACACCCCAA+GGG | 0.636431 | 2_1:+73442619 | None:intergenic |
| GCATGAGTTACTGGAAGCTG+AGG | 0.655267 | 2_1:+73442103 | None:intergenic |
| TAAGTCATCAACACCCCAAG+GGG | 0.667753 | 2_1:+73442620 | None:intergenic |
| GATGAAGCAAATGATCATGT+GGG | 0.669991 | 2_1:-73441955 | Msa0223780:exon |
| AGATAGGGCACTCTTCTGTG+AGG | 0.701688 | 2_1:-73442835 | Msa0223780:CDS |
| AAGTCATCAACACCCCAAGG+GGG | 0.775594 | 2_1:+73442621 | None:intergenic |
| AGAGATGGAATGGTTCACAG+AGG | 0.780922 | 2_1:-73442179 | Msa0223780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCATATTTTATTTTTCTCT+TGG | - | chr2_1:73441653-73441672 | Msa0223780:three_prime_UTR | 15.0% |
| !! | TTTGTATTGTATAATATTCA+TGG | + | chr2_1:73441715-73441734 | None:intergenic | 15.0% |
| !! | AAAAAAACAAGAGAAAATTA+AGG | + | chr2_1:73442048-73442067 | None:intergenic | 15.0% |
| !! | ACAATTTCAAAATCTTAATT+TGG | + | chr2_1:73443839-73443858 | None:intergenic | 15.0% |
| !! | TTTGTTCTTAAAGTTTCATT+AGG | - | chr2_1:73441804-73441823 | Msa0223780:three_prime_UTR | 20.0% |
| !! | AAAAGTTATAGTATACTTTC+TGG | - | chr2_1:73442225-73442244 | Msa0223780:intron | 20.0% |
| !! | ATCTTCATATAGTATAAGAT+AGG | + | chr2_1:73442283-73442302 | None:intergenic | 20.0% |
| !! | ACAAAATAAGTAACAGTTAT+AGG | + | chr2_1:73442774-73442793 | None:intergenic | 20.0% |
| !!! | TTGCAACTTTATTTCATAAT+TGG | - | chr2_1:73443138-73443157 | Msa0223780:intron | 20.0% |
| !!! | TTACAAATTTTGTTAGTTCA+TGG | + | chr2_1:73443177-73443196 | None:intergenic | 20.0% |
| !! | TGAAATCGAATATTTAACTA+AGG | + | chr2_1:73443205-73443224 | None:intergenic | 20.0% |
| !!! | GAGACAAAAAACATTTTATA+AGG | + | chr2_1:73443243-73443262 | None:intergenic | 20.0% |
| !!! | TTACAAAACTACATGTTTTT+AGG | + | chr2_1:73443275-73443294 | None:intergenic | 20.0% |
| ! | CAAAATATCAACTCAAGTAA+TGG | + | chr2_1:73441788-73441807 | None:intergenic | 25.0% |
| !! | TAAGGTGCTAATTAATTACT+TGG | + | chr2_1:73442030-73442049 | None:intergenic | 25.0% |
| ! | TTCATACATGAGAAACTAAT+AGG | - | chr2_1:73442127-73442146 | Msa0223780:CDS | 25.0% |
| ! | TACTATATGAAGATGAAATG+TGG | - | chr2_1:73442289-73442308 | Msa0223780:intron | 25.0% |
| !!! | TGTTGACTGAATTTTACTTT+TGG | - | chr2_1:73442321-73442340 | Msa0223780:intron | 25.0% |
| !! | TAACCTCTTTTATACACTTT+AGG | - | chr2_1:73442449-73442468 | Msa0223780:intron | 25.0% |
| ! | TTGAGTTTATCTACTAGTAT+TGG | + | chr2_1:73442690-73442709 | None:intergenic | 25.0% |
| !! | TCATATTTTGTGTTGAAGAT+AGG | - | chr2_1:73442844-73442863 | Msa0223780:CDS | 25.0% |
| !! | CATATTTTGTGTTGAAGATA+GGG | - | chr2_1:73442845-73442864 | Msa0223780:CDS | 25.0% |
| ! | AATTTGTACGAACTAAAATG+TGG | - | chr2_1:73443293-73443312 | Msa0223780:intron | 25.0% |
| ! | TGAAGCACAATAAGAAAAAA+AGG | + | chr2_1:73443475-73443494 | None:intergenic | 25.0% |
| ! | TCATGTGGGAATAATTTATT+TGG | - | chr2_1:73443754-73443773 | Msa0223780:CDS | 25.0% |
| !!! | TCAACTCAAAGTATTGTATT+CGG | + | chr2_1:73443878-73443897 | None:intergenic | 25.0% |
| ! | AAGTATGTTTATAAGTTGTG+TGG | - | chr2_1:73443897-73443916 | Msa0223780:five_prime_UTR | 25.0% |
| ! | CTAGAATGATACAAATAGTA+AGG | - | chr2_1:73443961-73443980 | Msa0223780:five_prime_UTR | 25.0% |
| ! | TACTCTTAAGAGATTTAACA+CGG | - | chr2_1:73444027-73444046 | Msa0223780:five_prime_UTR | 25.0% |
| ! | CAAACAACATTGTCCATTTT+TGG | - | chr2_1:73441731-73441750 | Msa0223780:three_prime_UTR | 30.0% |
| !! | GAAGTGTTTTAAGCCAAAAA+TGG | + | chr2_1:73441747-73441766 | None:intergenic | 30.0% |
| AAAGTTAAGACAACATACCT+TGG | + | chr2_1:73442157-73442176 | None:intergenic | 30.0% | |
| ! | TAACTGTTGAGATCTAGTTT+AGG | - | chr2_1:73442365-73442384 | Msa0223780:intron | 30.0% |
| AAGCCTAAAGTGTATAAAAG+AGG | + | chr2_1:73442455-73442474 | None:intergenic | 30.0% | |
| ACTGTTTACATAAGTCATTC+CGG | - | chr2_1:73442565-73442584 | Msa0223780:intron | 30.0% | |
| TTTCACCTGTATGTACAAAT+AGG | - | chr2_1:73442809-73442828 | Msa0223780:CDS | 30.0% | |
| ATAAAACAACAAAGACAGCT+AGG | - | chr2_1:73443354-73443373 | Msa0223780:intron | 30.0% | |
| TAAAACAACAAAGACAGCTA+GGG | - | chr2_1:73443355-73443374 | Msa0223780:intron | 30.0% | |
| ! | TTTTCTTATTGTGCTTCAGA+AGG | - | chr2_1:73443477-73443496 | Msa0223780:intron | 30.0% |
| AGTTTCTGTGTGATGAATAA+TGG | + | chr2_1:73443624-73443643 | None:intergenic | 30.0% | |
| TTTGGTGGGATAGTAATAAT+AGG | - | chr2_1:73443994-73444013 | Msa0223780:five_prime_UTR | 30.0% | |
| AGAAACTAATAGGTCATCCA+AGG | - | chr2_1:73442137-73442156 | Msa0223780:CDS | 35.0% | |
| !! | TGAATTTTACTTTTGGCCGT+TGG | - | chr2_1:73442328-73442347 | Msa0223780:intron | 35.0% |
| !! | GCTTATTTTCATAAGCTCTC+CGG | + | chr2_1:73442587-73442606 | None:intergenic | 35.0% |
| GTACATACAGGTGAAACAAA+AGG | + | chr2_1:73442805-73442824 | None:intergenic | 35.0% | |
| CTTGTCCTATTTGTACATAC+AGG | + | chr2_1:73442817-73442836 | None:intergenic | 35.0% | |
| AGTTAGATTTCATGGCAACT+TGG | + | chr2_1:73442956-73442975 | None:intergenic | 35.0% | |
| ACTTGATGTGTATTCCTCTT+AGG | + | chr2_1:73443014-73443033 | None:intergenic | 35.0% | |
| TTTGTTAGACATGTGTGACT+TGG | + | chr2_1:73443647-73443666 | None:intergenic | 35.0% | |
| TCACGTATGAGTTCAATTCT+AGG | + | chr2_1:73443673-73443692 | None:intergenic | 35.0% | |
| GATGAAGCAAATGATCATGT+GGG | - | chr2_1:73443740-73443759 | Msa0223780:CDS | 35.0% | |
| TATTGTATTCGGAGAGAAGT+AGG | + | chr2_1:73443867-73443886 | None:intergenic | 35.0% | |
| ! | TAGTAAGGCTCGTATCTTTT+TGG | - | chr2_1:73443976-73443995 | Msa0223780:five_prime_UTR | 35.0% |
| GCACAACAAATCATTGTTGC+AGG | + | chr2_1:73441884-73441903 | None:intergenic | 40.0% | |
| CTTGGCATATGTCACATCTA+GGG | + | chr2_1:73442012-73442031 | None:intergenic | 40.0% | |
| ACTTGGCATATGTCACATCT+AGG | + | chr2_1:73442013-73442032 | None:intergenic | 40.0% | |
| ! | CTTTCTGGAGATGTAGTATG+AGG | - | chr2_1:73442240-73442259 | Msa0223780:intron | 40.0% |
| TAACCAAGCACAAAGTCCAA+CGG | + | chr2_1:73442347-73442366 | None:intergenic | 40.0% | |
| !! | GACTGTTTGAAGGCATGTTT+TGG | + | chr2_1:73442658-73442677 | None:intergenic | 40.0% |
| GCATTTGTGAGACTGTTTGA+AGG | + | chr2_1:73442668-73442687 | None:intergenic | 40.0% | |
| CATACAGGTGAAACAAAAGG+AGG | + | chr2_1:73442802-73442821 | None:intergenic | 40.0% | |
| ! | GACGAATCGATTCATTTACC+AGG | - | chr2_1:73442888-73442907 | Msa0223780:intron | 40.0% |
| TTTCATGGCAACTTGGATAC+CGG | + | chr2_1:73442949-73442968 | None:intergenic | 40.0% | |
| TTTGGCGCAGTTAGATTTCA+TGG | + | chr2_1:73442964-73442983 | None:intergenic | 40.0% | |
| TGATGTGTATTCCTCTTAGG+TGG | + | chr2_1:73443011-73443030 | None:intergenic | 40.0% | |
| ATAAGTCATCAACACCCCAA+GGG | + | chr2_1:73443079-73443098 | None:intergenic | 40.0% | |
| AATAAGTCATCAACACCCCA+AGG | + | chr2_1:73443080-73443099 | None:intergenic | 40.0% | |
| !! | TTGGGGTGTTGATGACTTAT+TGG | - | chr2_1:73443079-73443098 | Msa0223780:intron | 40.0% |
| CATTTGCTTCATCCAAGATC+AGG | + | chr2_1:73443733-73443752 | None:intergenic | 40.0% | |
| GGATGAAGCAAATGATCATG+TGG | - | chr2_1:73443739-73443758 | Msa0223780:CDS | 40.0% | |
| ! | TAAGGCTCGTATCTTTTTGG+TGG | - | chr2_1:73443979-73443998 | Msa0223780:five_prime_UTR | 40.0% |
| !! | AAGGCTCGTATCTTTTTGGT+GGG | - | chr2_1:73443980-73443999 | Msa0223780:five_prime_UTR | 40.0% |
| CACGGTTGCAATTTCATGTT+TGG | - | chr2_1:73444045-73444064 | Msa0223780:five_prime_UTR | 40.0% | |
| AGCTTGCAAGCAAACATCAG+AGG | - | chr2_1:73441957-73441976 | Msa0223780:exon | 45.0% | |
| ! | TGATTTGCAGAAAGGCTTCC+TGG | + | chr2_1:73442909-73442928 | None:intergenic | 45.0% |
| ! | GTGAGTTTGTTCGTCGTCTT+TGG | + | chr2_1:73442982-73443001 | None:intergenic | 45.0% |
| AGACGACGAACAAACTCACT+TGG | - | chr2_1:73442983-73443002 | Msa0223780:intron | 45.0% | |
| TAAGTCATCAACACCCCAAG+GGG | + | chr2_1:73443078-73443097 | None:intergenic | 45.0% | |
| CAGAAGGATTCCATGCAGTT+TGG | - | chr2_1:73443493-73443512 | Msa0223780:intron | 45.0% | |
| TTCCATGCAGTTTGGAGAGA+TGG | - | chr2_1:73443501-73443520 | Msa0223780:intron | 45.0% | |
| TTCCATCTCTCCAAACTGCA+TGG | + | chr2_1:73443506-73443525 | None:intergenic | 45.0% | |
| TGCAGTTTGGAGAGATGGAA+TGG | - | chr2_1:73443506-73443525 | Msa0223780:intron | 45.0% | |
| AGAGATGGAATGGTTCACAG+AGG | - | chr2_1:73443516-73443535 | Msa0223780:intron | 45.0% | |
| ATGGAATGGTTCACAGAGGA+GGG | - | chr2_1:73443520-73443539 | Msa0223780:intron | 45.0% | |
| ! | TTCACAGAGGAGGGTCTTTT+TGG | - | chr2_1:73443529-73443548 | Msa0223780:intron | 45.0% |
| TGACTTCACTCAAGAAGCCA+TGG | - | chr2_1:73443555-73443574 | Msa0223780:intron | 45.0% | |
| TGGTTGCTAGCATGAGTTAC+TGG | + | chr2_1:73443604-73443623 | None:intergenic | 45.0% | |
| TACTTTACCGTGCCTGATCT+TGG | - | chr2_1:73443718-73443737 | Msa0223780:CDS | 45.0% | |
| ! | AGATAGGGCACTCTTCTGTG+AGG | - | chr2_1:73442860-73442879 | Msa0223780:CDS | 50.0% |
| !! | AGCGCTGGTGATTTGCAGAA+AGG | + | chr2_1:73442917-73442936 | None:intergenic | 50.0% |
| CTCACTTGGAACCACCTAAG+AGG | - | chr2_1:73442997-73443016 | Msa0223780:intron | 50.0% | |
| ! | AAGTCAGGCACTTGCTGAGA+AGG | + | chr2_1:73443050-73443069 | None:intergenic | 50.0% |
| AAGTCATCAACACCCCAAGG+GGG | + | chr2_1:73443077-73443096 | None:intergenic | 50.0% | |
| GATGGAATGGTTCACAGAGG+AGG | - | chr2_1:73443519-73443538 | Msa0223780:intron | 50.0% | |
| GCATGAGTTACTGGAAGCTG+AGG | + | chr2_1:73443595-73443614 | None:intergenic | 50.0% | |
| GCTTCATCCAAGATCAGGCA+CGG | + | chr2_1:73443728-73443747 | None:intergenic | 50.0% | |
| TGGCCGTTGGACTTTGTGCT+TGG | - | chr2_1:73442341-73442360 | Msa0223780:intron | 55.0% | |
| CAACTTGGATACCGGTGGCA+AGG | + | chr2_1:73442941-73442960 | None:intergenic | 55.0% | |
| CATGGCAACTTGGATACCGG+TGG | + | chr2_1:73442946-73442965 | None:intergenic | 55.0% | |
| TGCCTGACTTTACACCCCCT+TGG | - | chr2_1:73443060-73443079 | Msa0223780:intron | 55.0% | |
| GCCTGACTTTACACCCCCTT+GGG | - | chr2_1:73443061-73443080 | Msa0223780:intron | 55.0% | |
| CCTGACTTTACACCCCCTTG+GGG | - | chr2_1:73443062-73443081 | Msa0223780:intron | 55.0% | |
| AGGAACTTCAGCTGCAGCCA+TGG | + | chr2_1:73443575-73443594 | None:intergenic | 55.0% | |
| ! | CCCCAAGGGGGTGTAAAGTC+AGG | + | chr2_1:73443065-73443084 | None:intergenic | 60.0% |
| CACCAGCGCTTCCTTGCCAC+CGG | - | chr2_1:73442927-73442946 | Msa0223780:intron | 65.0% | |
| ! | TACCGGTGGCAAGGAAGCGC+TGG | + | chr2_1:73442932-73442951 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2_1 | gene | 73441643 | 73444074 | 73441643 | ID=Msa0223780;Name=Msa0223780 |
| chr2_1 | mRNA | 73441643 | 73444074 | 73441643 | ID=Msa0223780-mRNA-1;Parent=Msa0223780;Name=Msa0223780-mRNA-1;_AED=0.20;_eAED=0.20;_QI=205|1|1|1|1|1|3|330|243 |
| chr2_1 | exon | 73441643 | 73442221 | 73441643 | ID=Msa0223780-mRNA-1:exon:21579;Parent=Msa0223780-mRNA-1 |
| chr2_1 | exon | 73442587 | 73442886 | 73442587 | ID=Msa0223780-mRNA-1:exon:21578;Parent=Msa0223780-mRNA-1 |
| chr2_1 | exon | 73443687 | 73444074 | 73443687 | ID=Msa0223780-mRNA-1:exon:21577;Parent=Msa0223780-mRNA-1 |
| chr2_1 | five_prime_UTR | 73443870 | 73444074 | 73443870 | ID=Msa0223780-mRNA-1:five_prime_utr;Parent=Msa0223780-mRNA-1 |
| chr2_1 | CDS | 73443687 | 73443869 | 73443687 | ID=Msa0223780-mRNA-1:cds;Parent=Msa0223780-mRNA-1 |
| chr2_1 | CDS | 73442587 | 73442886 | 73442587 | ID=Msa0223780-mRNA-1:cds;Parent=Msa0223780-mRNA-1 |
| chr2_1 | CDS | 73441973 | 73442221 | 73441973 | ID=Msa0223780-mRNA-1:cds;Parent=Msa0223780-mRNA-1 |
| chr2_1 | three_prime_UTR | 73441643 | 73441972 | 73441643 | ID=Msa0223780-mRNA-1:three_prime_utr;Parent=Msa0223780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
