Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662520 | XP_013458443.1 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 7.04e-86 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662520 | I3SLJ0 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 3.36e-86 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0662520 | Msa1220860 | 0.887304 | 1.605301e-72 | -8.615850e-47 |
| Msa0662520 | Msa1220880 | 0.856442 | 3.208331e-62 | -8.615850e-47 |
| Msa0662520 | Msa1266170 | 0.854334 | 1.319337e-61 | -8.615850e-47 |
| Msa0662520 | Msa1404270 | 0.961695 | 5.313541e-120 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662520 | MtrunA17_Chr4g0070831 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 6.47e-90 | 256 |
| Msa0662520 | MtrunA17_Chr8g0343111 | 74.603 | 63 | 16 | 0 | 51 | 113 | 8 | 70 | 2.35e-29 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662520 | AT4G26060.1 | 58.879 | 107 | 42 | 1 | 18 | 124 | 14 | 118 | 5.63e-43 | 138 |
| Msa0662520 | AT5G57060.7 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa0662520 | AT5G57060.4 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa0662520 | AT5G57060.9 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa0662520 | AT5G57060.5 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa0662520 | AT5G57060.1 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa0662520 | AT5G57060.3 | 53.704 | 108 | 48 | 1 | 17 | 124 | 23 | 128 | 4.93e-38 | 125 |
| Msa0662520 | AT5G57060.6 | 53.704 | 108 | 48 | 1 | 17 | 124 | 23 | 128 | 4.93e-38 | 125 |
| Msa0662520 | AT5G57060.8 | 67.500 | 80 | 26 | 0 | 45 | 124 | 13 | 92 | 5.63e-38 | 124 |
| Msa0662520 | AT5G57060.2 | 67.500 | 80 | 26 | 0 | 45 | 124 | 13 | 92 | 5.63e-38 | 124 |
| Msa0662520 | AT1G54217.8 | 56.164 | 73 | 31 | 1 | 42 | 113 | 2 | 74 | 1.52e-22 | 85.5 |
| Msa0662520 | AT1G54217.2 | 56.164 | 73 | 31 | 1 | 42 | 113 | 2 | 74 | 1.52e-22 | 85.5 |
| Msa0662520 | AT1G54217.6 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa0662520 | AT1G54217.1 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa0662520 | AT1G54217.4 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa0662520 | AT1G54217.7 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa0662520 | AT1G54217.5 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa0662520 | AT1G54217.3 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
Find 55 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCAACAATTCTCTATTT+TGG | 0.056794 | 4_4:-272633 | Msa0662520:CDS |
| CCCCAGGGAACGGGCGGGGC+TGG | 0.245034 | 4_4:-272592 | Msa0662520:CDS |
| TCCCAGCCCCGCCCGTTCCC+TGG | 0.253175 | 4_4:+272590 | None:intergenic |
| CCCAGCCCCGCCCGTTCCCT+GGG | 0.307231 | 4_4:+272591 | None:intergenic |
| CCCAGGGAACGGGCGGGGCT+GGG | 0.312102 | 4_4:-272591 | Msa0662520:CDS |
| CCATGCTTTGGATGCGGAAT+TGG | 0.323771 | 4_4:-272788 | Msa0662520:CDS |
| GTCCTCTGGATCTCTAATTA+AGG | 0.363548 | 4_4:+272841 | None:intergenic |
| GAAGGACCCCAGGGAACGGG+CGG | 0.380252 | 4_4:-272598 | Msa0662520:CDS |
| GATAAGCCCCTCCCATGCTT+TGG | 0.389734 | 4_4:-272800 | Msa0662520:CDS |
| AGTGTTATTTGAACAATTCA+AGG | 0.392260 | 4_4:-276036 | Msa0662520:five_prime_UTR |
| TCGGAAGGACCCCAGGGAAC+GGG | 0.392848 | 4_4:-272601 | Msa0662520:CDS |
| TCTACAAAATCCATGGATAA+AGG | 0.398211 | 4_4:-275996 | Msa0662520:intron |
| AGGACCCCAGGGAACGGGCG+GGG | 0.417190 | 4_4:-272596 | Msa0662520:CDS |
| ATCAAAATTCTTAAAAGAAA+CGG | 0.429179 | 4_4:+275226 | None:intergenic |
| TTTAAGAAAGGGCGTGGAAT+CGG | 0.452413 | 4_4:-275255 | Msa0662520:CDS |
| TTTCCCTTTCCGTGAGCCAT+TGG | 0.452477 | 4_4:+272869 | None:intergenic |
| GATCCAGAGGACTTCCAGTC+AGG | 0.454913 | 4_4:-272830 | Msa0662520:CDS |
| AGAGAATGTTGATTTAAGAA+AGG | 0.460736 | 4_4:-275267 | Msa0662520:CDS |
| CATTTCAGTACCTTTATCCA+TGG | 0.469644 | 4_4:+275986 | None:intergenic |
| ATCATTATCGGAAGGACCCC+AGG | 0.469804 | 4_4:-272608 | Msa0662520:CDS |
| GATCCAATGGCTCACGGAAA+GGG | 0.471290 | 4_4:-272872 | Msa0662520:CDS |
| GAGAATGTTGATTTAAGAAA+GGG | 0.481994 | 4_4:-275266 | Msa0662520:CDS |
| GATTTATTTGCCCTCCTATG+TGG | 0.489666 | 4_4:-272659 | Msa0662520:CDS |
| TGTTGATTTAAGAAAGGGCG+TGG | 0.497594 | 4_4:-275261 | Msa0662520:CDS |
| CTTTGTTGTTGCAGATGGTA+GGG | 0.498784 | 4_4:-275294 | Msa0662520:intron |
| AGTCCTGACTGGAAGTCCTC+TGG | 0.502119 | 4_4:+272827 | None:intergenic |
| CCTTTGTTGTTGCAGATGGT+AGG | 0.504377 | 4_4:-275295 | Msa0662520:intron |
| AAGGACCCCAGGGAACGGGC+GGG | 0.511815 | 4_4:-272597 | Msa0662520:CDS |
| CAAAGTATCTACAAAATCCA+TGG | 0.514321 | 4_4:-276003 | Msa0662520:exon |
| CCAATTCCGCATCCAAAGCA+TGG | 0.518285 | 4_4:+272788 | None:intergenic |
| ATCGGAAGGACCCCAGGGAA+CGG | 0.537686 | 4_4:-272602 | Msa0662520:CDS |
| CTTTATGTGGCAGGACAAGC+AGG | 0.542559 | 4_4:-272896 | Msa0662520:intron |
| CCCCTCCCATGCTTTGGATG+CGG | 0.543713 | 4_4:-272794 | Msa0662520:CDS |
| CTTGAATTACTCCGAGCAAA+GGG | 0.545855 | 4_4:+275194 | None:intergenic |
| TTCCGCATCCAAAGCATGGG+AGG | 0.555498 | 4_4:+272792 | None:intergenic |
| TCTTGAATTACTCCGAGCAA+AGG | 0.556216 | 4_4:+275193 | None:intergenic |
| AGATCCAATGGCTCACGGAA+AGG | 0.578977 | 4_4:-272873 | Msa0662520:CDS |
| GCTTATCATAAAGTCCTGAC+TGG | 0.578995 | 4_4:+272816 | None:intergenic |
| TCCGCATCCAAAGCATGGGA+GGG | 0.588988 | 4_4:+272793 | None:intergenic |
| GCTTTGGATGCGGAATTGGA+TGG | 0.591155 | 4_4:-272784 | Msa0662520:CDS |
| CAATTCCGCATCCAAAGCAT+GGG | 0.593569 | 4_4:+272789 | None:intergenic |
| GTTGCATAGAACCACATAGG+AGG | 0.594452 | 4_4:+272648 | None:intergenic |
| CCGCATCCAAAGCATGGGAG+GGG | 0.606480 | 4_4:+272794 | None:intergenic |
| AGGACAAGCAGGAGATCCAA+TGG | 0.609106 | 4_4:-272885 | Msa0662520:CDS |
| TGCCTTAATTAGAGATCCAG+AGG | 0.616154 | 4_4:-272843 | Msa0662520:CDS |
| TTGCATAGAACCACATAGGA+GGG | 0.616476 | 4_4:+272649 | None:intergenic |
| TGAATTGTTCAAATAACACT+CGG | 0.618519 | 4_4:+276039 | None:intergenic |
| ATTGTTGCATAGAACCACAT+AGG | 0.645975 | 4_4:+272645 | None:intergenic |
| TTTGTTGATTCAAGTCAACA+AGG | 0.658733 | 4_4:-276247 | Msa0662520:intron |
| TCATTATCGGAAGGACCCCA+GGG | 0.659027 | 4_4:-272607 | Msa0662520:CDS |
| GCAGGAGATCCAATGGCTCA+CGG | 0.665431 | 4_4:-272878 | Msa0662520:CDS |
| TGTTGTTGCAGATGGTAGGG+TGG | 0.672021 | 4_4:-275291 | Msa0662520:intron |
| AGAGATTACAGCAATTGCAG+AGG | 0.673672 | 4_4:+272566 | None:intergenic |
| CCAGCCCCGCCCGTTCCCTG+GGG | 0.674263 | 4_4:+272592 | None:intergenic |
| TTTGCTCGGAGTAATTCAAG+AGG | 0.694585 | 4_4:-275191 | Msa0662520:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAATAAAATAAAAT+AGG | + | chr4_4:272550-272569 | None:intergenic | 0.0% |
| !! | TAATATATATATATGTTTCA+TGG | - | chr4_4:272031-272050 | Msa0662520:intron | 10.0% |
| !! | AAATAAAATAAAATAGGTAA+TGG | + | chr4_4:272544-272563 | None:intergenic | 10.0% |
| !!! | TGATTTTTTTTTTTTTGAAA+CGG | + | chr4_4:272735-272754 | None:intergenic | 10.0% |
| !! | TAAATCATAAAAATAATTGT+TGG | + | chr4_4:273485-273504 | None:intergenic | 10.0% |
| !!! | TAATTTTCGTTTTTATTTTT+GGG | + | chr4_4:274327-274346 | None:intergenic | 10.0% |
| !!! | TTTTGTAAGAAAAATAAAAT+TGG | + | chr4_4:274690-274709 | None:intergenic | 10.0% |
| !!! | AATTGCTTAATTAAGATTTT+TGG | - | chr4_4:271372-271391 | Msa0662520:intron | 15.0% |
| !!! | ATTGCTTAATTAAGATTTTT+GGG | - | chr4_4:271373-271392 | Msa0662520:intron | 15.0% |
| !! | ATCAAAATTCTTAAAAGAAA+CGG | + | chr4_4:272442-272461 | None:intergenic | 15.0% |
| !!! | TTAAGAATTTTGATCTTTTA+AGG | - | chr4_4:272448-272467 | Msa0662520:intron | 15.0% |
| !! | TAATCTGTATAATAAATACT+AGG | + | chr4_4:272761-272780 | None:intergenic | 15.0% |
| !! | ATATATTCTACTATAAATAG+AGG | - | chr4_4:273423-273442 | Msa0662520:intron | 15.0% |
| !!! | CAAAACTATTTTATCAAATT+TGG | - | chr4_4:273512-273531 | Msa0662520:intron | 15.0% |
| !!! | GTAATTTTCGTTTTTATTTT+TGG | + | chr4_4:274328-274347 | None:intergenic | 15.0% |
| !! | CATATTAAAATGATGAAAAT+TGG | - | chr4_4:274347-274366 | Msa0662520:intron | 15.0% |
| !!! | ATATAATTTGTCTTTTTGAA+TGG | - | chr4_4:275839-275858 | Msa0662520:intron | 15.0% |
| !! | ACATTTGAATTAAAAATAGA+GGG | + | chr4_4:276167-276186 | None:intergenic | 15.0% |
| !!! | TATTTTTAATTCAAATGTGA+AGG | - | chr4_4:276169-276188 | Msa0662520:intron | 15.0% |
| !! | GAAAAATTTATCAAATAAGA+AGG | + | chr4_4:276378-276397 | None:intergenic | 15.0% |
| !!! | TATTTTTTTAATATAGCAAC+TGG | - | chr4_4:276443-276462 | Msa0662520:five_prime_UTR | 15.0% |
| !! | ATTTGTAATTTATTACATGG+AGG | + | chr4_4:272074-272093 | None:intergenic | 20.0% |
| !! | TCCATGTAATAAATTACAAA+TGG | - | chr4_4:272073-272092 | Msa0662520:intron | 20.0% |
| !! | TCCATTTGTAATTTATTACA+TGG | + | chr4_4:272077-272096 | None:intergenic | 20.0% |
| !! | TGTAATAAATTACAAATGGA+AGG | - | chr4_4:272077-272096 | Msa0662520:intron | 20.0% |
| !! | TAGTTTATCATTATTTGGAT+TGG | - | chr4_4:272283-272302 | Msa0662520:intron | 20.0% |
| !! | ACTTAAGTAGAAAAATCATA+TGG | + | chr4_4:272519-272538 | None:intergenic | 20.0% |
| !! | TTTAATACTAGGATTTGATT+AGG | + | chr4_4:272707-272726 | None:intergenic | 20.0% |
| !! | TCAATTTGCAATTATATCAT+TGG | - | chr4_4:272816-272835 | Msa0662520:CDS | 20.0% |
| !! | TAATAGTGAATATTAGGATT+TGG | + | chr4_4:273344-273363 | None:intergenic | 20.0% |
| !! | AAATCCTAATATTCACTATT+AGG | - | chr4_4:273343-273362 | Msa0662520:intron | 20.0% |
| !! | TAATCCTAATAGTGAATATT+AGG | + | chr4_4:273350-273369 | None:intergenic | 20.0% |
| !! | TAGGATTAGAATTATAGATT+AGG | - | chr4_4:273362-273381 | Msa0662520:intron | 20.0% |
| !! | TAGAATTATAGATTAGGATT+TGG | - | chr4_4:273368-273387 | Msa0662520:intron | 20.0% |
| !! | ATGTTTATTACCTAGAAAAT+AGG | - | chr4_4:274197-274216 | Msa0662520:intron | 20.0% |
| !!! | TTGTCATGTGAATTTTTTAT+AGG | - | chr4_4:274384-274403 | Msa0662520:intron | 20.0% |
| !! | ATTCATCTATATCGATATAA+TGG | + | chr4_4:274499-274518 | None:intergenic | 20.0% |
| !! | AGTAATATGCTAATGATTTA+TGG | - | chr4_4:274601-274620 | Msa0662520:intron | 20.0% |
| !!! | TTAAATTGCAGATTTCTTTT+TGG | - | chr4_4:274984-275003 | Msa0662520:intron | 20.0% |
| !!! | ATCTCATGTTACTATATTTT+TGG | - | chr4_4:275481-275500 | Msa0662520:intron | 20.0% |
| !! | TTTGATACAAATTTGTGTAT+AGG | - | chr4_4:275639-275658 | Msa0662520:intron | 20.0% |
| !! | AGATATCATGTTAATTTAGA+TGG | - | chr4_4:275758-275777 | Msa0662520:intron | 20.0% |
| !!! | AATGGTCAAAATAAGAATTT+TGG | - | chr4_4:275857-275876 | Msa0662520:intron | 20.0% |
| !! | CACATTTGAATTAAAAATAG+AGG | + | chr4_4:276168-276187 | None:intergenic | 20.0% |
| !! | TATACCTACTATAAATTTGA+TGG | - | chr4_4:276408-276427 | Msa0662520:five_prime_UTR | 20.0% |
| !! | ATGATTTGATTGATTTCTGA+AGG | - | chr4_4:271462-271481 | Msa0662520:intron | 25.0% |
| !!! | TTGATTCACTTTTGAAAAAC+AGG | - | chr4_4:271599-271618 | Msa0662520:intron | 25.0% |
| ! | TGAATTGTTCAAATAACACT+CGG | + | chr4_4:271629-271648 | None:intergenic | 25.0% |
| !!! | AGTGTTATTTGAACAATTCA+AGG | - | chr4_4:271629-271648 | Msa0662520:intron | 25.0% |
| ! | AACATCTATGCAAATTAATC+AGG | + | chr4_4:271720-271739 | None:intergenic | 25.0% |
| !!! | AAAATATGTTTTGTTAGCAC+TGG | - | chr4_4:271830-271849 | Msa0662520:intron | 25.0% |
| !!! | CTACTAGGTTTTAACTTTTA+AGG | - | chr4_4:271913-271932 | Msa0662520:intron | 25.0% |
| ! | TTATATTATGAACTCTCACA+TGG | + | chr4_4:272014-272033 | None:intergenic | 25.0% |
| ! | AATAAATTACAAATGGAAGG+AGG | - | chr4_4:272080-272099 | Msa0662520:intron | 25.0% |
| !! | TGGTCTAGTTTATCATTATT+TGG | - | chr4_4:272278-272297 | Msa0662520:intron | 25.0% |
| ! | TTCCATTTGAAAATGCTTAA+TGG | + | chr4_4:272347-272366 | None:intergenic | 25.0% |
| !!! | AGAGAATGTTGATTTAAGAA+AGG | - | chr4_4:272398-272417 | Msa0662520:intron | 25.0% |
| !!! | GAGAATGTTGATTTAAGAAA+GGG | - | chr4_4:272399-272418 | Msa0662520:intron | 25.0% |
| ! | AAACGGCAAAATTTAATACT+AGG | + | chr4_4:272718-272737 | None:intergenic | 25.0% |
| ! | ACAGATTAGAATCATAGATT+AGG | - | chr4_4:272773-272792 | Msa0662520:intron | 25.0% |
| ! | GAGAGAAAATTCATCAAAAA+AGG | + | chr4_4:272919-272938 | None:intergenic | 25.0% |
| !! | TCTTATTATCTCTTTTCATC+CGG | - | chr4_4:272980-272999 | Msa0662520:intron | 25.0% |
| ! | TAGAGAAAATACAAACAACA+AGG | + | chr4_4:273246-273265 | None:intergenic | 25.0% |
| !!! | TTAAGTTTGTTACAATGTGT+TGG | + | chr4_4:273276-273295 | None:intergenic | 25.0% |
| !!! | ACTTAGTAAGCTTTATTTTG+AGG | - | chr4_4:273297-273316 | Msa0662520:intron | 25.0% |
| !!! | CTTAGTAAGCTTTATTTTGA+GGG | - | chr4_4:273298-273317 | Msa0662520:intron | 25.0% |
| !!! | TTAGTAAGCTTTATTTTGAG+GGG | - | chr4_4:273299-273318 | Msa0662520:intron | 25.0% |
| ! | TATAGATTAGGATTTGGATT+AGG | - | chr4_4:273374-273393 | Msa0662520:intron | 25.0% |
| ! | TTTATCAAATTTGGCTAAAC+TGG | - | chr4_4:273521-273540 | Msa0662520:intron | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | + | chr4_4:273737-273756 | None:intergenic | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | - | chr4_4:273741-273760 | Msa0662520:intron | 25.0% |
| ! | AACTATTAGGAAAGATTTAG+AGG | + | chr4_4:273781-273800 | None:intergenic | 25.0% |
| ! | AGACTATAAGAGAAACTATT+AGG | + | chr4_4:273794-273813 | None:intergenic | 25.0% |
| ! | TTATGATGCAACAATTACAA+AGG | + | chr4_4:273847-273866 | None:intergenic | 25.0% |
| ! | CTTTCATCAATTATACAAAG+AGG | + | chr4_4:273880-273899 | None:intergenic | 25.0% |
| !!! | TCACTTTTGTTTGATAACTT+TGG | + | chr4_4:273979-273998 | None:intergenic | 25.0% |
| ! | ATTACTAGTATTTCAATCCT+AGG | + | chr4_4:274134-274153 | None:intergenic | 25.0% |
| ! | CATTGTATTTGATAAATGCA+TGG | + | chr4_4:274169-274188 | None:intergenic | 25.0% |
| !!! | TTTTCGTTTTTATTTTTGGG+TGG | + | chr4_4:274324-274343 | None:intergenic | 25.0% |
| !! | GATGAAAATTGGACTTTTAA+TGG | - | chr4_4:274358-274377 | Msa0662520:intron | 25.0% |
| !! | TATATCGATATAATGGAAGT+CGG | + | chr4_4:274492-274511 | None:intergenic | 25.0% |
| ! | AGAATAGACTCATTAAATAC+TGG | - | chr4_4:274655-274674 | Msa0662520:intron | 25.0% |
| !! | TATGCAACAATTCTCTATTT+TGG | - | chr4_4:275032-275051 | Msa0662520:intron | 25.0% |
| !! | ATGCAACAATTCTCTATTTT+GGG | - | chr4_4:275033-275052 | Msa0662520:intron | 25.0% |
| !!! | TCTATTTTGGGAATCATTAT+CGG | - | chr4_4:275045-275064 | Msa0662520:intron | 25.0% |
| ! | GTAGTTAAGTTCAAAAAACA+AGG | - | chr4_4:275282-275301 | Msa0662520:CDS | 25.0% |
| ! | TAACTTGATACGAAAAAGAA+AGG | + | chr4_4:275562-275581 | None:intergenic | 25.0% |
| ! | ACACAAATTTGTATCAAAAG+TGG | + | chr4_4:275637-275656 | None:intergenic | 25.0% |
| ! | TTTAAAAACGTCAACAATGT+TGG | + | chr4_4:275900-275919 | None:intergenic | 25.0% |
| !!! | AGGAAGATTTTTTTAACAGA+AGG | + | chr4_4:276144-276163 | None:intergenic | 25.0% |
| ! | TTTGAATTAAAAATAGAGGG+AGG | + | chr4_4:276164-276183 | None:intergenic | 25.0% |
| !!! | TTTTAATTCAAATGTGAAGG+TGG | - | chr4_4:276172-276191 | Msa0662520:intron | 25.0% |
| ! | GTATATAACAGCTTCAATAT+AGG | - | chr4_4:276260-276279 | Msa0662520:five_prime_UTR | 25.0% |
| !! | TTTGTTGATTCAAGTCAACA+AGG | - | chr4_4:271418-271437 | Msa0662520:intron | 30.0% |
| TGAGATCAGATATATGCATT+TGG | + | chr4_4:271493-271512 | None:intergenic | 30.0% | |
| ! | CAAAGTATCTACAAAATCCA+TGG | - | chr4_4:271662-271681 | Msa0662520:intron | 30.0% |
| TCTACAAAATCCATGGATAA+AGG | - | chr4_4:271669-271688 | Msa0662520:intron | 30.0% | |
| TGATGTGAATTCAGAAATTG+TGG | - | chr4_4:272140-272159 | Msa0662520:intron | 30.0% | |
| TTGAAAATGCTTAATGGAGA+TGG | + | chr4_4:272341-272360 | None:intergenic | 30.0% | |
| ! | CTCCATTAAGCATTTTCAAA+TGG | - | chr4_4:272342-272361 | Msa0662520:intron | 30.0% |
| GTAATTCAAGAGGTAACAAT+AGG | - | chr4_4:272484-272503 | Msa0662520:intron | 30.0% | |
| !!! | GTCAGTTCTTATTTTGTTAG+TGG | - | chr4_4:272584-272603 | Msa0662520:CDS | 30.0% |
| !!! | AGTTCTTATTTTGTTAGTGG+AGG | - | chr4_4:272587-272606 | Msa0662520:CDS | 30.0% |
| GGATTTGATTAGGATTGATA+AGG | + | chr4_4:272697-272716 | None:intergenic | 30.0% | |
| GGATGAAAAGAGATAATAAG+AGG | + | chr4_4:272981-273000 | None:intergenic | 30.0% | |
| TCACTATAGCAAAGACAATT+GGG | + | chr4_4:273186-273205 | None:intergenic | 30.0% | |
| !!! | TAGTAAGCTTTATTTTGAGG+GGG | - | chr4_4:273300-273319 | Msa0662520:intron | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | + | chr4_4:273757-273776 | None:intergenic | 30.0% |
| AGATTTAGAGGTTAATGAGT+TGG | + | chr4_4:273769-273788 | None:intergenic | 30.0% | |
| !! | TTTGATAACTTTGGTTCTAC+TGG | + | chr4_4:273970-273989 | None:intergenic | 30.0% |
| ! | GAGATTCTTATTTATAGCCT+AGG | - | chr4_4:274114-274133 | Msa0662520:intron | 30.0% |
| TTTGATAAATGCATGGTAGT+GGG | + | chr4_4:274162-274181 | None:intergenic | 30.0% | |
| ATTTGATAAATGCATGGTAG+TGG | + | chr4_4:274163-274182 | None:intergenic | 30.0% | |
| AAGTCATTATAGTTGCTAGT+GGG | + | chr4_4:274242-274261 | None:intergenic | 30.0% | |
| TAAGTCATTATAGTTGCTAG+TGG | + | chr4_4:274243-274262 | None:intergenic | 30.0% | |
| ATCAAAGTCAAAAGACAAAG+GGG | + | chr4_4:274528-274547 | None:intergenic | 30.0% | |
| GATCAAAGTCAAAAGACAAA+GGG | + | chr4_4:274529-274548 | None:intergenic | 30.0% | |
| AGATCAAAGTCAAAAGACAA+AGG | + | chr4_4:274530-274549 | None:intergenic | 30.0% | |
| !!! | TGTCTTTTGACTTTGATCTT+AGG | - | chr4_4:274531-274550 | Msa0662520:intron | 30.0% |
| !!! | GTCTTTTGACTTTGATCTTA+GGG | - | chr4_4:274532-274551 | Msa0662520:intron | 30.0% |
| AGTGCAAGTAGTTATTTGAA+GGG | + | chr4_4:274751-274770 | None:intergenic | 30.0% | |
| AAGTGCAAGTAGTTATTTGA+AGG | + | chr4_4:274752-274771 | None:intergenic | 30.0% | |
| ATAACTACTTGCACTTTATG+TGG | - | chr4_4:274756-274775 | Msa0662520:intron | 30.0% | |
| TACACACAAATAGACAAGAA+GGG | + | chr4_4:275143-275162 | None:intergenic | 30.0% | |
| ATACACACAAATAGACAAGA+AGG | + | chr4_4:275144-275163 | None:intergenic | 30.0% | |
| GTTAAACTGCTAAATAGAGT+TGG | - | chr4_4:275219-275238 | Msa0662520:CDS | 30.0% | |
| TTCAAAAAACAAGGAAGCTT+TGG | - | chr4_4:275291-275310 | Msa0662520:intron | 30.0% | |
| GTATTTGATCCATGAAAACA+TGG | + | chr4_4:275334-275353 | None:intergenic | 30.0% | |
| TTATGCCAGCTTAAATGATA+TGG | + | chr4_4:275392-275411 | None:intergenic | 30.0% | |
| !! | AGTGGACTAAGAATAAAAAC+TGG | + | chr4_4:275619-275638 | None:intergenic | 30.0% |
| AGATATTGCAACAGTCATTA+TGG | - | chr4_4:275784-275803 | Msa0662520:intron | 30.0% | |
| TAGCGATGTCTAAATTGTTA+TGG | - | chr4_4:276063-276082 | Msa0662520:intron | 30.0% | |
| CACACCATCAAATTTATAGT+AGG | + | chr4_4:276415-276434 | None:intergenic | 30.0% | |
| !!! | CGTTTCTTCGTTACTTTTTC+TGG | - | chr4_4:271258-271277 | Msa0662520:intron | 35.0% |
| TAGAAGCAGCAGATAAATAC+AGG | + | chr4_4:271543-271562 | None:intergenic | 35.0% | |
| CATTTCAGTACCTTTATCCA+TGG | + | chr4_4:271682-271701 | None:intergenic | 35.0% | |
| TTACCTATGCATCGAAATCA+CGG | + | chr4_4:271811-271830 | None:intergenic | 35.0% | |
| GTTTGTATGATTGAGCTACT+AGG | - | chr4_4:271898-271917 | Msa0662520:intron | 35.0% | |
| TTAAATGCTAACAACAGCTC+AGG | + | chr4_4:271967-271986 | None:intergenic | 35.0% | |
| AAATTACAAATGGAAGGAGG+AGG | - | chr4_4:272083-272102 | Msa0662520:intron | 35.0% | |
| !! | ATTTCCTTTGTTGTTGCAGA+TGG | - | chr4_4:272366-272385 | Msa0662520:intron | 35.0% |
| !!! | CTTATTTTGTTAGTGGAGGA+AGG | - | chr4_4:272591-272610 | Msa0662520:CDS | 35.0% |
| ! | TAGAGTGATAAAGCGTTCAA+AGG | + | chr4_4:272621-272640 | None:intergenic | 35.0% |
| ! | AATTTTCTCTCTCCTCTACA+AGG | - | chr4_4:272928-272947 | Msa0662520:intron | 35.0% |
| ! | CTGGTTGAATCAAATTTTCC+CGG | + | chr4_4:273098-273117 | None:intergenic | 35.0% |
| GTCACTATAGCAAAGACAAT+TGG | + | chr4_4:273187-273206 | None:intergenic | 35.0% | |
| !! | ACTTATAGTCTTGGTTCTAC+CGG | + | chr4_4:274020-274039 | None:intergenic | 35.0% |
| GGGTTAAGAACTTATAGTCT+TGG | + | chr4_4:274029-274048 | None:intergenic | 35.0% | |
| AGTTCTTAACCCAAGAACAA+AGG | - | chr4_4:274037-274056 | Msa0662520:intron | 35.0% | |
| ! | AGAGCTTTTCCTTTGTTCTT+GGG | + | chr4_4:274049-274068 | None:intergenic | 35.0% |
| ! | CATGTTAGTGCCTATTTTCT+AGG | + | chr4_4:274210-274229 | None:intergenic | 35.0% |
| !! | CTACTTTGAAGCATTTAGAG+AGG | - | chr4_4:274268-274287 | Msa0662520:intron | 35.0% |
| TCAAAGTCAAAAGACAAAGG+GGG | + | chr4_4:274527-274546 | None:intergenic | 35.0% | |
| CTGCACATTATCTCTAAACT+AGG | + | chr4_4:274637-274656 | None:intergenic | 35.0% | |
| ATTGTTGCATAGAACCACAT+AGG | + | chr4_4:275023-275042 | None:intergenic | 35.0% | |
| !! | TTTTGGGAATCATTATCGGA+AGG | - | chr4_4:275049-275068 | Msa0662520:intron | 35.0% |
| CTGAGCTAATAGTATTTACC+TGG | + | chr4_4:275256-275275 | None:intergenic | 35.0% | |
| ! | TGAAAACATGGTTTGTCAAC+TGG | + | chr4_4:275322-275341 | None:intergenic | 35.0% |
| ! | GTTGACAAACCATGTTTTCA+TGG | - | chr4_4:275322-275341 | Msa0662520:intron | 35.0% |
| ACAAGCCATATCATTTAAGC+TGG | - | chr4_4:275384-275403 | Msa0662520:intron | 35.0% | |
| TCACAACTTATAGCAACTCA+AGG | + | chr4_4:275418-275437 | None:intergenic | 35.0% | |
| ! | TTGAGTTGCTATAAGTTGTG+AGG | - | chr4_4:275417-275436 | Msa0662520:intron | 35.0% |
| GTAACATGAGATATCTGCAA+TGG | + | chr4_4:275473-275492 | None:intergenic | 35.0% | |
| !!! | ATTTTTGGCGAAACTACGTT+AGG | - | chr4_4:275496-275515 | Msa0662520:intron | 35.0% |
| TGTTATGGTGATAAACTTGC+AGG | - | chr4_4:276078-276097 | Msa0662520:intron | 35.0% | |
| ACATTTGAAAGCGATTCTGA+CGG | - | chr4_4:276211-276230 | Msa0662520:intron | 35.0% | |
| !!! | AAGTTGCGTTTTGTTTGTGA+AGG | - | chr4_4:276292-276311 | Msa0662520:five_prime_UTR | 35.0% |
| GCAGCAGATAAATACAGGAA+AGG | + | chr4_4:271538-271557 | None:intergenic | 40.0% | |
| TGGAGGAATAATCATCAGTC+TGG | + | chr4_4:272057-272076 | None:intergenic | 40.0% | |
| AGTAATACGTATCACCAGAG+TGG | - | chr4_4:272230-272249 | Msa0662520:intron | 40.0% | |
| AGACCATAGACTTGAAAGCT+TGG | + | chr4_4:272264-272283 | None:intergenic | 40.0% | |
| !! | CTTTGTTGTTGCAGATGGTA+GGG | - | chr4_4:272371-272390 | Msa0662520:intron | 40.0% |
| !! | TGTTGATTTAAGAAAGGGCG+TGG | - | chr4_4:272404-272423 | Msa0662520:intron | 40.0% |
| ! | TTTAAGAAAGGGCGTGGAAT+CGG | - | chr4_4:272410-272429 | Msa0662520:intron | 40.0% |
| !!! | ATCTTTTAAGGCCCTTTGCT+CGG | - | chr4_4:272460-272479 | Msa0662520:intron | 40.0% |
| CTTGAATTACTCCGAGCAAA+GGG | + | chr4_4:272474-272493 | None:intergenic | 40.0% | |
| TCTTGAATTACTCCGAGCAA+AGG | + | chr4_4:272475-272494 | None:intergenic | 40.0% | |
| TTTGCTCGGAGTAATTCAAG+AGG | - | chr4_4:272474-272493 | Msa0662520:intron | 40.0% | |
| ATTAGGATTGATAAGGCGAC+TGG | + | chr4_4:272690-272709 | None:intergenic | 40.0% | |
| TACAAGGATCTGCTATGGTT+TGG | - | chr4_4:272944-272963 | Msa0662520:intron | 40.0% | |
| AGTAGGACAAAAACGTTGAC+CGG | + | chr4_4:273002-273021 | None:intergenic | 40.0% | |
| ! | TTTTCGAAAATGGGTCTCAC+TGG | + | chr4_4:273132-273151 | None:intergenic | 40.0% |
| ! | GACTGGTGGTTTTCGAAAAT+GGG | + | chr4_4:273141-273160 | None:intergenic | 40.0% |
| ! | TGACTGGTGGTTTTCGAAAA+TGG | + | chr4_4:273142-273161 | None:intergenic | 40.0% |
| ATGATTTCAAAGGTGACTGG+TGG | + | chr4_4:273155-273174 | None:intergenic | 40.0% | |
| TGGATGATTTCAAAGGTGAC+TGG | + | chr4_4:273158-273177 | None:intergenic | 40.0% | |
| TCCAGTTGTGCTACCATTTA+CGG | - | chr4_4:273208-273227 | Msa0662520:intron | 40.0% | |
| AACAACCAAGCCTTACTAAG+TGG | - | chr4_4:273686-273705 | Msa0662520:intron | 40.0% | |
| ACAACCAAGCCTTACTAAGT+GGG | - | chr4_4:273687-273706 | Msa0662520:intron | 40.0% | |
| GAAATTGATACGTGACCGAT+AGG | - | chr4_4:273899-273918 | Msa0662520:intron | 40.0% | |
| !! | TGTTTTCAAGACGGTCCTAT+CGG | + | chr4_4:273917-273936 | None:intergenic | 40.0% |
| !! | TTCCTTGCCTGTTTTCAAGA+CGG | + | chr4_4:273926-273945 | None:intergenic | 40.0% |
| !! | ATAACTTTGGTTCTACTGGC+AGG | + | chr4_4:273966-273985 | None:intergenic | 40.0% |
| ! | GAGAGCTTTTCCTTTGTTCT+TGG | + | chr4_4:274050-274069 | None:intergenic | 40.0% |
| ! | TTGAAGCATTTAGAGAGGCT+AGG | - | chr4_4:274273-274292 | Msa0662520:intron | 40.0% |
| TCAAGAGTTCACTAAGCATG+TGG | + | chr4_4:274417-274436 | None:intergenic | 40.0% | |
| TGCCTTAATTAGAGATCCAG+AGG | - | chr4_4:274822-274841 | Msa0662520:intron | 40.0% | |
| GTCCTCTGGATCTCTAATTA+AGG | + | chr4_4:274827-274846 | None:intergenic | 40.0% | |
| GCTTATCATAAAGTCCTGAC+TGG | + | chr4_4:274852-274871 | None:intergenic | 40.0% | |
| GATTTATTTGCCCTCCTATG+TGG | - | chr4_4:275006-275025 | Msa0662520:intron | 40.0% | |
| TTGCATAGAACCACATAGGA+GGG | + | chr4_4:275019-275038 | None:intergenic | 40.0% | |
| AGAGATTACAGCAATTGCAG+AGG | + | chr4_4:275102-275121 | None:intergenic | 40.0% | |
| CATTTGTGAATGCATGCATG+AGG | + | chr4_4:275177-275196 | None:intergenic | 40.0% | |
| GATATCTGCAATGGCAGAAA+AGG | + | chr4_4:275464-275483 | None:intergenic | 40.0% | |
| ATCTGATTGTGACCTCATTG+TGG | + | chr4_4:275728-275747 | None:intergenic | 40.0% | |
| ATGTCTGCTACACTGAAAGT+TGG | - | chr4_4:276331-276350 | Msa0662520:five_prime_UTR | 40.0% | |
| TGTCTGCTACACTGAAAGTT+GGG | - | chr4_4:276332-276351 | Msa0662520:five_prime_UTR | 40.0% | |
| AGTTGGGAGAAAATGATACG+TGG | - | chr4_4:276348-276367 | Msa0662520:five_prime_UTR | 40.0% | |
| TATGCATCGAAATCACGGCA+AGG | + | chr4_4:271806-271825 | None:intergenic | 45.0% | |
| TTGCCGTGATTTCGATGCAT+AGG | - | chr4_4:271805-271824 | Msa0662520:intron | 45.0% | |
| !! | TTAGCACTGGTGTGATAAGC+AGG | - | chr4_4:271843-271862 | Msa0662520:intron | 45.0% |
| !! | TAGCACTGGTGTGATAAGCA+GGG | - | chr4_4:271844-271863 | Msa0662520:intron | 45.0% |
| ! | AGGAGGTGTGTTCATTCATC+AGG | - | chr4_4:272100-272119 | Msa0662520:intron | 45.0% |
| ! | GCTCCAAGCTTTCAAGTCTA+TGG | - | chr4_4:272258-272277 | Msa0662520:intron | 45.0% |
| TGGTTGACTGAGCAAAAGTG+TGG | - | chr4_4:272303-272322 | Msa0662520:intron | 45.0% | |
| CCTACCATCTGCAACAACAA+AGG | + | chr4_4:272373-272392 | None:intergenic | 45.0% | |
| !! | CCTTTGTTGTTGCAGATGGT+AGG | - | chr4_4:272370-272389 | Msa0662520:intron | 45.0% |
| GATAAGGCGACTGGTGATTT+GGG | + | chr4_4:272681-272700 | None:intergenic | 45.0% | |
| TGATAAGGCGACTGGTGATT+TGG | + | chr4_4:272682-272701 | None:intergenic | 45.0% | |
| GCCTAAGTGGAAGTTATGCT+CGG | + | chr4_4:272854-272873 | None:intergenic | 45.0% | |
| AAATCATCCAGTAGCTGCAG+TGG | + | chr4_4:272888-272907 | None:intergenic | 45.0% | |
| TCCTCTACAAGGATCTGCTA+TGG | - | chr4_4:272939-272958 | Msa0662520:intron | 45.0% | |
| ACCATAGCAGATCCTTGTAG+AGG | + | chr4_4:272943-272962 | None:intergenic | 45.0% | |
| GCACAATGAATGTGCACAGT+AGG | + | chr4_4:273030-273049 | None:intergenic | 45.0% | |
| ACTGACGTGAAAGAGAAGCA+AGG | + | chr4_4:273059-273078 | None:intergenic | 45.0% | |
| TTGCTTCTCTTTCACGTCAG+TGG | - | chr4_4:273058-273077 | Msa0662520:intron | 45.0% | |
| TGCTTCTCTTTCACGTCAGT+GGG | - | chr4_4:273059-273078 | Msa0662520:intron | 45.0% | |
| ! | AGTGGGTTTCTCTTTGCATC+CGG | - | chr4_4:273076-273095 | Msa0662520:intron | 45.0% |
| GGCTCACTGGATGATTTCAA+AGG | + | chr4_4:273165-273184 | None:intergenic | 45.0% | |
| GTAAATGGTAGCACAACTGG+AGG | + | chr4_4:273209-273228 | None:intergenic | 45.0% | |
| GAGGTGAGTGTAGTCTGATT+TGG | - | chr4_4:273442-273461 | Msa0662520:intron | 45.0% | |
| TCCACACATGTACTTGTGAG+AGG | - | chr4_4:273571-273590 | Msa0662520:intron | 45.0% | |
| CCACACATGTACTTGTGAGA+GGG | - | chr4_4:273572-273591 | Msa0662520:intron | 45.0% | |
| CACACATGTACTTGTGAGAG+GGG | - | chr4_4:273573-273592 | Msa0662520:intron | 45.0% | |
| CAACCAAGCCTTACTAAGTG+GGG | - | chr4_4:273688-273707 | Msa0662520:intron | 45.0% | |
| TTGAGCACGTAACACACTCA+AGG | + | chr4_4:273820-273839 | None:intergenic | 45.0% | |
| GATAGGACCGTCTTGAAAAC+AGG | - | chr4_4:273916-273935 | Msa0662520:intron | 45.0% | |
| GAGTTCACTAAGCATGTGGA+AGG | + | chr4_4:274413-274432 | None:intergenic | 45.0% | |
| GTTCTGCACGTCATTTACAG+CGG | - | chr4_4:274457-274476 | Msa0662520:intron | 45.0% | |
| GTCAAAAGACAAAGGGGGAA+TGG | + | chr4_4:274522-274541 | None:intergenic | 45.0% | |
| CTACTTGCACTTTATGTGGC+AGG | - | chr4_4:274760-274779 | Msa0662520:intron | 45.0% | |
| CAATTCCGCATCCAAAGCAT+GGG | + | chr4_4:274879-274898 | None:intergenic | 45.0% | |
| CAATCATAGCAGCGAGCAAA+TGG | + | chr4_4:274939-274958 | None:intergenic | 45.0% | |
| GTTGCATAGAACCACATAGG+AGG | + | chr4_4:275020-275039 | None:intergenic | 45.0% | |
| AAGAAGGGAGCAGAGAGAAA+GGG | + | chr4_4:275128-275147 | None:intergenic | 45.0% | |
| !! | GAGTTGGTTTGAACATAGCC+AGG | - | chr4_4:275235-275254 | Msa0662520:CDS | 45.0% |
| TGGCAGAAAAGGAACTTGGT+TGG | + | chr4_4:275453-275472 | None:intergenic | 45.0% | |
| GCAATGGCAGAAAAGGAACT+TGG | + | chr4_4:275457-275476 | None:intergenic | 45.0% | |
| !! | GTCTAATTGGTGGTGATGAG+TGG | + | chr4_4:275695-275714 | None:intergenic | 45.0% |
| TCATCAAGGGGTCTAATTGG+TGG | + | chr4_4:275705-275724 | None:intergenic | 45.0% | |
| TGGTCATCAAGGGGTCTAAT+TGG | + | chr4_4:275708-275727 | None:intergenic | 45.0% | |
| ACCTCATTGTGGTCATCAAG+GGG | + | chr4_4:275717-275736 | None:intergenic | 45.0% | |
| GACCTCATTGTGGTCATCAA+GGG | + | chr4_4:275718-275737 | None:intergenic | 45.0% | |
| TGACCTCATTGTGGTCATCA+AGG | + | chr4_4:275719-275738 | None:intergenic | 45.0% | |
| !! | AGCACTGGTGTGATAAGCAG+GGG | - | chr4_4:271845-271864 | Msa0662520:intron | 50.0% |
| ACGTATCACCAGAGTGGTCT+TGG | - | chr4_4:272236-272255 | Msa0662520:intron | 50.0% | |
| ! | GCAAAAGTGTGGAGTTAGCG+AGG | - | chr4_4:272314-272333 | Msa0662520:intron | 50.0% |
| TGTTGTTGCAGATGGTAGGG+TGG | - | chr4_4:272374-272393 | Msa0662520:intron | 50.0% | |
| !! | GGTAGGCGACTTGGTGATTT+GGG | + | chr4_4:272660-272679 | None:intergenic | 50.0% |
| GCCGAGCATAACTTCCACTT+AGG | - | chr4_4:272850-272869 | Msa0662520:CDS | 50.0% | |
| GTGCACAGTAGGACAGAAGT+AGG | + | chr4_4:273019-273038 | None:intergenic | 50.0% | |
| GTGGGTTTCTCTTTGCATCC+GGG | - | chr4_4:273077-273096 | Msa0662520:intron | 50.0% | |
| GCAAAGACAATTGGGCTCAC+TGG | + | chr4_4:273178-273197 | None:intergenic | 50.0% | |
| GCCGTAAATGGTAGCACAAC+TGG | + | chr4_4:273212-273231 | None:intergenic | 50.0% | |
| GTCGTAGCTTCAGCCGTAAA+TGG | + | chr4_4:273224-273243 | None:intergenic | 50.0% | |
| CCCTCTCACAAGTACATGTG+TGG | + | chr4_4:273575-273594 | None:intergenic | 50.0% | |
| CAAGCCTTACTAAGTGGGGT+CGG | - | chr4_4:273692-273711 | Msa0662520:intron | 50.0% | |
| GACCGTCTTGAAAACAGGCA+AGG | - | chr4_4:273921-273940 | Msa0662520:intron | 50.0% | |
| !! | ATAGTCTTGGTTCTACCGGC+AGG | + | chr4_4:274016-274035 | None:intergenic | 50.0% |
| CTTTATGTGGCAGGACAAGC+AGG | - | chr4_4:274769-274788 | Msa0662520:intron | 50.0% | |
| AGGACAAGCAGGAGATCCAA+TGG | - | chr4_4:274780-274799 | Msa0662520:intron | 50.0% | |
| AGATCCAATGGCTCACGGAA+AGG | - | chr4_4:274792-274811 | Msa0662520:intron | 50.0% | |
| GATCCAATGGCTCACGGAAA+GGG | - | chr4_4:274793-274812 | Msa0662520:intron | 50.0% | |
| TTTCCCTTTCCGTGAGCCAT+TGG | + | chr4_4:274799-274818 | None:intergenic | 50.0% | |
| CCAATTCCGCATCCAAAGCA+TGG | + | chr4_4:274880-274899 | None:intergenic | 50.0% | |
| ! | CCATGCTTTGGATGCGGAAT+TGG | - | chr4_4:274877-274896 | Msa0662520:intron | 50.0% |
| ! | GCTTTGGATGCGGAATTGGA+TGG | - | chr4_4:274881-274900 | Msa0662520:intron | 50.0% |
| TAGCAGCGAGCAAATGGAGA+AGG | + | chr4_4:274933-274952 | None:intergenic | 50.0% | |
| ATCATTATCGGAAGGACCCC+AGG | - | chr4_4:275057-275076 | Msa0662520:intron | 50.0% | |
| TCATTATCGGAAGGACCCCA+GGG | - | chr4_4:275058-275077 | Msa0662520:intron | 50.0% | |
| CAAGAAGGGAGCAGAGAGAA+AGG | + | chr4_4:275129-275148 | None:intergenic | 50.0% | |
| ! | ACCCCTTGATGACCACAATG+AGG | - | chr4_4:275713-275732 | Msa0662520:intron | 50.0% |
| CTTGCAGGCATTAGTGTGCT+CGG | - | chr4_4:276093-276112 | Msa0662520:intron | 50.0% | |
| AGGCATTAGTGTGCTCGGTA+GGG | - | chr4_4:276098-276117 | Msa0662520:intron | 50.0% | |
| ! | GTAGCAGACATTTTCAGCGC+TGG | + | chr4_4:276322-276341 | None:intergenic | 50.0% |
| !! | GCGACTTGGTGATTTGGGTG+AGG | + | chr4_4:272655-272674 | None:intergenic | 55.0% |
| !! | GGGTAGGCGACTTGGTGATT+TGG | + | chr4_4:272661-272680 | None:intergenic | 55.0% |
| ! | GGTGATTTGGGTAGGCGACT+TGG | + | chr4_4:272669-272688 | None:intergenic | 55.0% |
| ! | AGGCGACTGGTGATTTGGGT+AGG | + | chr4_4:272677-272696 | None:intergenic | 55.0% |
| GTGGAAGTTATGCTCGGCAG+AGG | + | chr4_4:272848-272867 | None:intergenic | 55.0% | |
| ! | CTCACTGGAGAAAGTGCAGC+TGG | + | chr4_4:273117-273136 | None:intergenic | 55.0% |
| CGACCCCACTTAGTAAGGCT+TGG | + | chr4_4:273694-273713 | None:intergenic | 55.0% | |
| GTAGCCGACCCCACTTAGTA+AGG | + | chr4_4:273699-273718 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | chr4_4:273700-273719 | Msa0662520:intron | 55.0% | |
| !! | TTGGTTCTACTGGCAGGTCG+CGG | + | chr4_4:273960-273979 | None:intergenic | 55.0% |
| GCAGGAGATCCAATGGCTCA+CGG | - | chr4_4:274787-274806 | Msa0662520:intron | 55.0% | |
| GATCCAGAGGACTTCCAGTC+AGG | - | chr4_4:274835-274854 | Msa0662520:intron | 55.0% | |
| AGTCCTGACTGGAAGTCCTC+TGG | + | chr4_4:274841-274860 | None:intergenic | 55.0% | |
| GATAAGCCCCTCCCATGCTT+TGG | - | chr4_4:274865-274884 | Msa0662520:intron | 55.0% | |
| TCCGCATCCAAAGCATGGGA+GGG | + | chr4_4:274875-274894 | None:intergenic | 55.0% | |
| TTCCGCATCCAAAGCATGGG+AGG | + | chr4_4:274876-274895 | None:intergenic | 55.0% | |
| CAGGCATTAGTGTGCTCGGT+AGG | - | chr4_4:276097-276116 | Msa0662520:intron | 55.0% | |
| GCTTGGAGCCAAGACCACTC+TGG | + | chr4_4:272247-272266 | None:intergenic | 60.0% | |
| GGCAGCAGTAGGTGCCTAAG+TGG | + | chr4_4:272867-272886 | None:intergenic | 60.0% | |
| GTAGCTGCAGTGGCAGCAGT+AGG | + | chr4_4:272878-272897 | None:intergenic | 60.0% | |
| ACTGCTGCCACTGCAGCTAC+TGG | - | chr4_4:272878-272897 | Msa0662520:CDS | 60.0% | |
| CTACTGGCAGGTCGCGGTTA+GGG | + | chr4_4:273954-273973 | None:intergenic | 60.0% | |
| TCTACTGGCAGGTCGCGGTT+AGG | + | chr4_4:273955-273974 | None:intergenic | 60.0% | |
| !! | TTGGTTCTACCGGCAGGTCG+CGG | + | chr4_4:274010-274029 | None:intergenic | 60.0% |
| CCGCATCCAAAGCATGGGAG+GGG | + | chr4_4:274874-274893 | None:intergenic | 60.0% | |
| ! | CCCCTCCCATGCTTTGGATG+CGG | - | chr4_4:274871-274890 | Msa0662520:intron | 60.0% |
| ATCGGAAGGACCCCAGGGAA+CGG | - | chr4_4:275063-275082 | Msa0662520:intron | 60.0% | |
| AGACCCTAACCGCGACCTGC+CGG | - | chr4_4:273998-274017 | Msa0662520:intron | 65.0% | |
| CTACCGGCAGGTCGCGGTTA+GGG | + | chr4_4:274004-274023 | None:intergenic | 65.0% | |
| TCTACCGGCAGGTCGCGGTT+AGG | + | chr4_4:274005-274024 | None:intergenic | 65.0% | |
| TCGGAAGGACCCCAGGGAAC+GGG | - | chr4_4:275064-275083 | Msa0662520:intron | 65.0% | |
| GAAGGACCCCAGGGAACGGG+CGG | - | chr4_4:275067-275086 | Msa0662520:intron | 70.0% | |
| AAGGACCCCAGGGAACGGGC+GGG | - | chr4_4:275068-275087 | Msa0662520:intron | 70.0% | |
| AGGACCCCAGGGAACGGGCG+GGG | - | chr4_4:275069-275088 | Msa0662520:intron | 75.0% | |
| ! | CCAGCCCCGCCCGTTCCCTG+GGG | + | chr4_4:275076-275095 | None:intergenic | 80.0% |
| ! | CCCAGCCCCGCCCGTTCCCT+GGG | + | chr4_4:275077-275096 | None:intergenic | 80.0% |
| ! | CCCAGGGAACGGGCGGGGCT+GGG | - | chr4_4:275074-275093 | Msa0662520:intron | 80.0% |
| ! | TCCCAGCCCCGCCCGTTCCC+TGG | + | chr4_4:275078-275097 | None:intergenic | 80.0% |
| ! | CCCCAGGGAACGGGCGGGGC+TGG | - | chr4_4:275073-275092 | Msa0662520:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 271217 | 276470 | 271217 | ID=Msa0662520;Name=Msa0662520 |
| chr4_4 | mRNA | 271217 | 276470 | 271217 | ID=Msa0662520-mRNA-1;Parent=Msa0662520;Name=Msa0662520-mRNA-1;_AED=0.28;_eAED=0.29;_QI=283|0.8|0.83|1|0.6|0.5|6|0|126 |
| chr4_4 | exon | 271217 | 271228 | 271217 | ID=Msa0662520-mRNA-1:exon:103;Parent=Msa0662520-mRNA-1 |
| chr4_4 | exon | 272575 | 272692 | 272575 | ID=Msa0662520-mRNA-1:exon:102;Parent=Msa0662520-mRNA-1 |
| chr4_4 | exon | 272779 | 272905 | 272779 | ID=Msa0662520-mRNA-1:exon:101;Parent=Msa0662520-mRNA-1 |
| chr4_4 | exon | 275192 | 275302 | 275192 | ID=Msa0662520-mRNA-1:exon:100;Parent=Msa0662520-mRNA-1 |
| chr4_4 | exon | 275997 | 276066 | 275997 | ID=Msa0662520-mRNA-1:exon:99;Parent=Msa0662520-mRNA-1 |
| chr4_4 | exon | 276248 | 276470 | 276248 | ID=Msa0662520-mRNA-1:exon:98;Parent=Msa0662520-mRNA-1 |
| chr4_4 | five_prime_UTR | 276248 | 276470 | 276248 | ID=Msa0662520-mRNA-1:five_prime_utr;Parent=Msa0662520-mRNA-1 |
| chr4_4 | five_prime_UTR | 276007 | 276066 | 276007 | ID=Msa0662520-mRNA-1:five_prime_utr;Parent=Msa0662520-mRNA-1 |
| chr4_4 | CDS | 275997 | 276006 | 275997 | ID=Msa0662520-mRNA-1:cds;Parent=Msa0662520-mRNA-1 |
| chr4_4 | CDS | 275192 | 275302 | 275192 | ID=Msa0662520-mRNA-1:cds;Parent=Msa0662520-mRNA-1 |
| chr4_4 | CDS | 272779 | 272905 | 272779 | ID=Msa0662520-mRNA-1:cds;Parent=Msa0662520-mRNA-1 |
| chr4_4 | CDS | 272575 | 272692 | 272575 | ID=Msa0662520-mRNA-1:cds;Parent=Msa0662520-mRNA-1 |
| chr4_4 | CDS | 271217 | 271228 | 271217 | ID=Msa0662520-mRNA-1:cds;Parent=Msa0662520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
