Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220880 | XP_013458443.1 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 7.04e-86 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa1220880 | 0.810717 | 1.003020e-50 | -8.615850e-47 |
| Msa0042270 | Msa1220880 | 0.809712 | 1.652034e-50 | -8.615850e-47 |
| Msa0060070 | Msa1220880 | 0.801688 | 8.003318e-49 | -8.615850e-47 |
| Msa0061500 | Msa1220880 | 0.811551 | 6.615355e-51 | -8.615850e-47 |
| Msa0071480 | Msa1220880 | 0.809651 | 1.703243e-50 | -8.615850e-47 |
| Msa0090380 | Msa1220880 | 0.801040 | 1.086273e-48 | -8.615850e-47 |
| Msa0119440 | Msa1220880 | 0.836556 | 8.729712e-57 | -8.615850e-47 |
| Msa0631320 | Msa1220880 | 0.835314 | 1.803842e-56 | -8.615850e-47 |
| Msa0649100 | Msa1220880 | 0.819537 | 1.102294e-52 | -8.615850e-47 |
| Msa0662520 | Msa1220880 | 0.856442 | 3.208331e-62 | -8.615850e-47 |
| Msa0748660 | Msa1220880 | 0.811604 | 6.444272e-51 | -8.615850e-47 |
| Msa0764030 | Msa1220880 | 0.804897 | 1.732466e-49 | -8.615850e-47 |
| Msa0769720 | Msa1220880 | 0.800636 | 1.313563e-48 | -8.615850e-47 |
| Msa0775560 | Msa1220880 | 0.829828 | 4.137994e-55 | -8.615850e-47 |
| Msa0786070 | Msa1220880 | 0.802357 | 5.830283e-49 | -8.615850e-47 |
| Msa0805910 | Msa1220880 | 0.835943 | 1.249919e-56 | -8.615850e-47 |
| Msa0805920 | Msa1220880 | 0.801463 | 8.899312e-49 | -8.615850e-47 |
| Msa0812950 | Msa1220880 | 0.837351 | 5.473048e-57 | -8.615850e-47 |
| Msa0823440 | Msa1220880 | 0.810546 | 1.092136e-50 | -8.615850e-47 |
| Msa0136630 | Msa1220880 | 0.829073 | 6.313764e-55 | -8.615850e-47 |
| Msa0152560 | Msa1220880 | 0.819773 | 9.737913e-53 | -8.615850e-47 |
| Msa0162690 | Msa1220880 | 0.815246 | 1.019695e-51 | -8.615850e-47 |
| Msa0187310 | Msa1220880 | 0.855250 | 7.155810e-62 | -8.615850e-47 |
| Msa0189610 | Msa1220880 | 0.840766 | 7.136888e-58 | -8.615850e-47 |
| Msa0196880 | Msa1220880 | 0.817898 | 2.597357e-52 | -8.615850e-47 |
| Msa0213430 | Msa1220880 | 0.802906 | 4.490981e-49 | -8.615850e-47 |
| Msa0227360 | Msa1220880 | 0.801511 | 8.699731e-49 | -8.615850e-47 |
| Msa0364790 | Msa1220880 | 0.835174 | 1.956303e-56 | -8.615850e-47 |
| Msa0380600 | Msa1220880 | 0.828142 | 1.059643e-54 | -8.615850e-47 |
| Msa0430240 | Msa1220880 | 0.829685 | 4.483271e-55 | -8.615850e-47 |
| Msa0456770 | Msa1220880 | 0.816987 | 4.165948e-52 | -8.615850e-47 |
| Msa1023300 | Msa1220880 | 0.800381 | 1.479922e-48 | -8.615850e-47 |
| Msa0264680 | Msa1220880 | 0.810218 | 1.285487e-50 | -8.615850e-47 |
| Msa0276430 | Msa1220880 | 0.842263 | 2.877084e-58 | -8.615850e-47 |
| Msa0302730 | Msa1220880 | 0.831682 | 1.453769e-55 | -8.615850e-47 |
| Msa0305620 | Msa1220880 | 0.800047 | 1.730753e-48 | -8.615850e-47 |
| Msa0316470 | Msa1220880 | 0.809322 | 2.003770e-50 | -8.615850e-47 |
| Msa0319290 | Msa1220880 | 0.827396 | 1.600738e-54 | -8.615850e-47 |
| Msa1107200 | Msa1220880 | 0.810891 | 9.200628e-51 | -8.615850e-47 |
| Msa1150790 | Msa1220880 | 0.810499 | 1.118249e-50 | -8.615850e-47 |
| Msa1150800 | Msa1220880 | 0.805206 | 1.492914e-49 | -8.615850e-47 |
| Msa1214170 | Msa1220880 | 0.814163 | 1.771661e-51 | -8.615850e-47 |
| Msa1220880 | Msa1225580 | 0.819616 | 1.057591e-52 | -8.615850e-47 |
| Msa1220880 | Msa1260680 | 0.808202 | 3.476940e-50 | -8.615850e-47 |
| Msa1220880 | Msa1266170 | 0.973442 | 1.955455e-136 | -8.615850e-47 |
| Msa1220880 | Msa1280170 | 0.803109 | 4.078044e-49 | -8.615850e-47 |
| Msa1220880 | Msa1285200 | 0.838375 | 2.985641e-57 | -8.615850e-47 |
| Msa1220880 | Msa1312440 | 0.800074 | 1.709388e-48 | -8.615850e-47 |
| Msa1220880 | Msa1349860 | 0.805434 | 1.337425e-49 | -8.615850e-47 |
| Msa1220880 | Msa1352660 | 0.810267 | 1.255150e-50 | -8.615850e-47 |
| Msa1220880 | Msa1355510 | 0.809221 | 2.106071e-50 | -8.615850e-47 |
| Msa1220880 | Msa1360020 | 0.816979 | 4.181325e-52 | -8.615850e-47 |
| Msa1220880 | Msa1367530 | 0.801657 | 8.120828e-49 | -8.615850e-47 |
| Msa1220880 | Msa1404270 | 0.874174 | 8.299133e-68 | -8.615850e-47 |
| Msa1220880 | Msa1421210 | 0.820814 | 5.622704e-53 | -8.615850e-47 |
| Msa1220880 | Msa1430130 | 0.819187 | 1.325082e-52 | -8.615850e-47 |
| Msa1220880 | Msa1433410 | 0.803371 | 3.600045e-49 | -8.615850e-47 |
| Msa1220880 | Msa1443640 | 0.818838 | 1.590842e-52 | -8.615850e-47 |
| Msa1220880 | Msa1460750 | 0.820981 | 5.145575e-53 | -8.615850e-47 |
| Msa0500400 | Msa1220880 | 0.821094 | 4.846792e-53 | -8.615850e-47 |
| Msa0534870 | Msa1220880 | 0.827448 | 1.556084e-54 | -8.615850e-47 |
| Msa0853440 | Msa1220880 | 0.826480 | 2.650834e-54 | -8.615850e-47 |
| Msa0945130 | Msa1220880 | 0.826217 | 3.062921e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220880 | MtrunA17_Chr4g0070831 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 6.47e-90 | 256 |
| Msa1220880 | MtrunA17_Chr8g0343111 | 74.603 | 63 | 16 | 0 | 51 | 113 | 8 | 70 | 2.35e-29 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1220880 | AT4G26060.1 | 58.879 | 107 | 42 | 1 | 18 | 124 | 14 | 118 | 5.63e-43 | 138 |
| Msa1220880 | AT5G57060.7 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa1220880 | AT5G57060.4 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa1220880 | AT5G57060.9 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa1220880 | AT5G57060.5 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa1220880 | AT5G57060.1 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa1220880 | AT5G57060.3 | 53.704 | 108 | 48 | 1 | 17 | 124 | 23 | 128 | 4.93e-38 | 125 |
| Msa1220880 | AT5G57060.6 | 53.704 | 108 | 48 | 1 | 17 | 124 | 23 | 128 | 4.93e-38 | 125 |
| Msa1220880 | AT5G57060.8 | 67.500 | 80 | 26 | 0 | 45 | 124 | 13 | 92 | 5.63e-38 | 124 |
| Msa1220880 | AT5G57060.2 | 67.500 | 80 | 26 | 0 | 45 | 124 | 13 | 92 | 5.63e-38 | 124 |
| Msa1220880 | AT1G54217.8 | 56.164 | 73 | 31 | 1 | 42 | 113 | 2 | 74 | 1.52e-22 | 85.5 |
| Msa1220880 | AT1G54217.2 | 56.164 | 73 | 31 | 1 | 42 | 113 | 2 | 74 | 1.52e-22 | 85.5 |
| Msa1220880 | AT1G54217.6 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa1220880 | AT1G54217.1 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa1220880 | AT1G54217.4 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa1220880 | AT1G54217.7 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa1220880 | AT1G54217.5 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa1220880 | AT1G54217.3 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
Find 55 sgRNAs with CRISPR-Local
Find 325 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCAACAATTCTCTATTT+TGG | 0.056794 | 8_1:+84267641 | Msa1220880:CDS |
| CCCCAGGGAACGGGCGGGGC+TGG | 0.245034 | 8_1:+84267682 | Msa1220880:CDS |
| TCCCAGCCCCGCCCGTTCCC+TGG | 0.253175 | 8_1:-84267684 | None:intergenic |
| CCCAGCCCCGCCCGTTCCCT+GGG | 0.307231 | 8_1:-84267683 | None:intergenic |
| CCCAGGGAACGGGCGGGGCT+GGG | 0.312102 | 8_1:+84267683 | Msa1220880:CDS |
| CCATGCTTTGGATGCGGAAT+TGG | 0.323771 | 8_1:+84267486 | Msa1220880:CDS |
| GTCCTCTGGATCTCTAATTA+AGG | 0.363548 | 8_1:-84267433 | None:intergenic |
| GAAGGACCCCAGGGAACGGG+CGG | 0.380252 | 8_1:+84267676 | Msa1220880:CDS |
| GATAAGCCCCTCCCATGCTT+TGG | 0.389734 | 8_1:+84267474 | Msa1220880:CDS |
| AGTGTTATTTGAACAATTCA+AGG | 0.392260 | 8_1:+84264240 | Msa1220880:five_prime_UTR |
| TCGGAAGGACCCCAGGGAAC+GGG | 0.392848 | 8_1:+84267673 | Msa1220880:CDS |
| TCTACAAAATCCATGGATAA+AGG | 0.398211 | 8_1:+84264280 | Msa1220880:exon |
| AGGACCCCAGGGAACGGGCG+GGG | 0.417190 | 8_1:+84267678 | Msa1220880:CDS |
| ATCAAAATTCTTAAAAGAAA+CGG | 0.429179 | 8_1:-84265045 | None:intergenic |
| TTTAAGAAAGGGCGTGGAAT+CGG | 0.452413 | 8_1:+84265016 | Msa1220880:CDS |
| TTTCCCTTTCCGTGAGCCAT+TGG | 0.452477 | 8_1:-84267405 | None:intergenic |
| GATCCAGAGGACTTCCAGTC+AGG | 0.454913 | 8_1:+84267444 | Msa1220880:CDS |
| AGAGAATGTTGATTTAAGAA+AGG | 0.460736 | 8_1:+84265004 | Msa1220880:CDS |
| CATTTCAGTACCTTTATCCA+TGG | 0.469644 | 8_1:-84264290 | None:intergenic |
| ATCATTATCGGAAGGACCCC+AGG | 0.469804 | 8_1:+84267666 | Msa1220880:CDS |
| GATCCAATGGCTCACGGAAA+GGG | 0.471290 | 8_1:+84267402 | Msa1220880:CDS |
| GAGAATGTTGATTTAAGAAA+GGG | 0.481994 | 8_1:+84265005 | Msa1220880:CDS |
| GATTTATTTGCCCTCCTATG+TGG | 0.489666 | 8_1:+84267615 | Msa1220880:CDS |
| TGTTGATTTAAGAAAGGGCG+TGG | 0.497594 | 8_1:+84265010 | Msa1220880:CDS |
| CTTTGTTGTTGCAGATGGTA+GGG | 0.498784 | 8_1:+84264977 | Msa1220880:intron |
| AGTCCTGACTGGAAGTCCTC+TGG | 0.502119 | 8_1:-84267447 | None:intergenic |
| CCTTTGTTGTTGCAGATGGT+AGG | 0.504377 | 8_1:+84264976 | Msa1220880:intron |
| AAGGACCCCAGGGAACGGGC+GGG | 0.511815 | 8_1:+84267677 | Msa1220880:CDS |
| CAAAGTATCTACAAAATCCA+TGG | 0.514321 | 8_1:+84264273 | Msa1220880:exon |
| CCAATTCCGCATCCAAAGCA+TGG | 0.518285 | 8_1:-84267486 | None:intergenic |
| ATCGGAAGGACCCCAGGGAA+CGG | 0.537686 | 8_1:+84267672 | Msa1220880:CDS |
| CTTTATGTGGCAGGACAAGC+AGG | 0.542559 | 8_1:+84267378 | Msa1220880:intron |
| CCCCTCCCATGCTTTGGATG+CGG | 0.543713 | 8_1:+84267480 | Msa1220880:CDS |
| CTTGAATTACTCCGAGCAAA+GGG | 0.545855 | 8_1:-84265077 | None:intergenic |
| TTCCGCATCCAAAGCATGGG+AGG | 0.555498 | 8_1:-84267482 | None:intergenic |
| TCTTGAATTACTCCGAGCAA+AGG | 0.556216 | 8_1:-84265078 | None:intergenic |
| AGATCCAATGGCTCACGGAA+AGG | 0.578977 | 8_1:+84267401 | Msa1220880:CDS |
| GCTTATCATAAAGTCCTGAC+TGG | 0.578995 | 8_1:-84267458 | None:intergenic |
| TCCGCATCCAAAGCATGGGA+GGG | 0.588988 | 8_1:-84267481 | None:intergenic |
| GCTTTGGATGCGGAATTGGA+TGG | 0.591155 | 8_1:+84267490 | Msa1220880:CDS |
| CAATTCCGCATCCAAAGCAT+GGG | 0.593569 | 8_1:-84267485 | None:intergenic |
| GTTGCATAGAACCACATAGG+AGG | 0.594452 | 8_1:-84267626 | None:intergenic |
| CCGCATCCAAAGCATGGGAG+GGG | 0.606480 | 8_1:-84267480 | None:intergenic |
| AGGACAAGCAGGAGATCCAA+TGG | 0.609106 | 8_1:+84267389 | Msa1220880:intron |
| TGCCTTAATTAGAGATCCAG+AGG | 0.616154 | 8_1:+84267431 | Msa1220880:CDS |
| TTGCATAGAACCACATAGGA+GGG | 0.616476 | 8_1:-84267625 | None:intergenic |
| TGAATTGTTCAAATAACACT+CGG | 0.618519 | 8_1:-84264237 | None:intergenic |
| ATTGTTGCATAGAACCACAT+AGG | 0.645975 | 8_1:-84267629 | None:intergenic |
| TTTGTTGATTCAAGTCAACA+AGG | 0.658733 | 8_1:+84264029 | Msa1220880:five_prime_UTR |
| TCATTATCGGAAGGACCCCA+GGG | 0.659027 | 8_1:+84267667 | Msa1220880:CDS |
| GCAGGAGATCCAATGGCTCA+CGG | 0.665431 | 8_1:+84267396 | Msa1220880:CDS |
| TGTTGTTGCAGATGGTAGGG+TGG | 0.672021 | 8_1:+84264980 | Msa1220880:intron |
| AGAGATTACAGCAATTGCAG+AGG | 0.673672 | 8_1:-84267708 | None:intergenic |
| CCAGCCCCGCCCGTTCCCTG+GGG | 0.674263 | 8_1:-84267682 | None:intergenic |
| TTTGCTCGGAGTAATTCAAG+AGG | 0.694585 | 8_1:+84265080 | Msa1220880:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAATAAAATAAAAT+AGG | - | chr8_1:84265156-84265175 | None:intergenic | 0.0% |
| !! | ATAATATAATATGTTTCTTA+TGG | + | chr8_1:84264637-84264656 | Msa1220880:intron | 10.0% |
| !! | AAATAAAATAAAATAGGTAA+TGG | - | chr8_1:84265150-84265169 | None:intergenic | 10.0% |
| !!! | GATTTTTTTTTTTTTTGAAA+CGG | - | chr8_1:84265343-84265362 | None:intergenic | 10.0% |
| !! | TAAATCATAAAAATAATTGT+TGG | - | chr8_1:84266094-84266113 | None:intergenic | 10.0% |
| !!! | TAATTTTCGTTTTTATTTTT+GGG | - | chr8_1:84266936-84266955 | None:intergenic | 10.0% |
| !!! | TTTTGTAAGAAAAATAAAAT+TGG | - | chr8_1:84267299-84267318 | None:intergenic | 10.0% |
| !! | GAAACTTTAAATTAAATTAA+AGG | + | chr8_1:84268582-84268601 | Msa1220880:intron | 10.0% |
| !!! | AATTGCTTAATTAAGATTTT+TGG | + | chr8_1:84263983-84264002 | Msa1220880:five_prime_UTR | 15.0% |
| !!! | ATTGCTTAATTAAGATTTTT+GGG | + | chr8_1:84263984-84264003 | Msa1220880:five_prime_UTR | 15.0% |
| !! | ATCAAAATTCTTAAAAGAAA+CGG | - | chr8_1:84265048-84265067 | None:intergenic | 15.0% |
| !!! | TTAAGAATTTTGATCTTTTA+AGG | + | chr8_1:84265054-84265073 | Msa1220880:CDS | 15.0% |
| !! | TAATCTGTATAATAAATACT+AGG | - | chr8_1:84265370-84265389 | None:intergenic | 15.0% |
| !! | ATATATTCTACTATAAATAG+AGG | + | chr8_1:84266032-84266051 | Msa1220880:intron | 15.0% |
| !!! | CAAAACTATTTTATCAAATT+TGG | + | chr8_1:84266121-84266140 | Msa1220880:intron | 15.0% |
| !!! | GTAATTTTCGTTTTTATTTT+TGG | - | chr8_1:84266937-84266956 | None:intergenic | 15.0% |
| !! | CATATTAAAATGATGAAAAT+TGG | + | chr8_1:84266956-84266975 | Msa1220880:intron | 15.0% |
| !!! | ATATAATTTGTCTTTTTGAA+TGG | + | chr8_1:84268449-84268468 | Msa1220880:intron | 15.0% |
| !! | ACATTTGAATTAAAAATAGA+GGG | - | chr8_1:84268773-84268792 | None:intergenic | 15.0% |
| !!! | TATTTTTAATTCAAATGTGA+AGG | + | chr8_1:84268775-84268794 | Msa1220880:intron | 15.0% |
| !! | GAAAAATTTATCAAATAAGA+AGG | - | chr8_1:84268984-84269003 | None:intergenic | 15.0% |
| !!! | TATTTTTTTAATATAGCAAC+TGG | + | chr8_1:84269049-84269068 | Msa1220880:intron | 15.0% |
| !! | ATTTGTAATTTATTACATGG+AGG | - | chr8_1:84264680-84264699 | None:intergenic | 20.0% |
| !! | TCCATGTAATAAATTACAAA+TGG | + | chr8_1:84264679-84264698 | Msa1220880:intron | 20.0% |
| !! | TCCATTTGTAATTTATTACA+TGG | - | chr8_1:84264683-84264702 | None:intergenic | 20.0% |
| !! | TGTAATAAATTACAAATGGA+AGG | + | chr8_1:84264683-84264702 | Msa1220880:intron | 20.0% |
| !! | TAGTTTATCATTATTTGGAT+TGG | + | chr8_1:84264889-84264908 | Msa1220880:intron | 20.0% |
| !! | ACTTAAGTAGAAAAATCATA+TGG | - | chr8_1:84265125-84265144 | None:intergenic | 20.0% |
| !! | TTTAATACTAGGATTTGATT+AGG | - | chr8_1:84265315-84265334 | None:intergenic | 20.0% |
| !! | TCAATTTGCAATTATATCAT+TGG | + | chr8_1:84265425-84265444 | Msa1220880:intron | 20.0% |
| !! | TAATAGTGAATATTAGGATT+TGG | - | chr8_1:84265953-84265972 | None:intergenic | 20.0% |
| !! | AAATCCTAATATTCACTATT+AGG | + | chr8_1:84265952-84265971 | Msa1220880:intron | 20.0% |
| !! | TAATCCTAATAGTGAATATT+AGG | - | chr8_1:84265959-84265978 | None:intergenic | 20.0% |
| !! | TAGGATTAGAATTATAGATT+AGG | + | chr8_1:84265971-84265990 | Msa1220880:intron | 20.0% |
| !! | TAGAATTATAGATTAGGATT+TGG | + | chr8_1:84265977-84265996 | Msa1220880:intron | 20.0% |
| !! | ATGTTTATTACCTAGAAAAT+AGG | + | chr8_1:84266806-84266825 | Msa1220880:intron | 20.0% |
| !!! | TTGTCATGTGAATTTTTTAT+AGG | + | chr8_1:84266993-84267012 | Msa1220880:intron | 20.0% |
| !! | ATTCATCTATATCGATATAA+TGG | - | chr8_1:84267108-84267127 | None:intergenic | 20.0% |
| !! | AGTAATATGCTAATGATTTA+TGG | + | chr8_1:84267210-84267229 | Msa1220880:intron | 20.0% |
| !!! | TTAAATTGCAGATTTCTTTT+TGG | + | chr8_1:84267593-84267612 | Msa1220880:intron | 20.0% |
| !! | TAGTTAAGTTCAAATAAACA+AGG | + | chr8_1:84267892-84267911 | Msa1220880:intron | 20.0% |
| !!! | ATCTCATGTTACTATATTTT+TGG | + | chr8_1:84268091-84268110 | Msa1220880:intron | 20.0% |
| !! | TTTGATACAAATTTGTGTAT+AGG | + | chr8_1:84268249-84268268 | Msa1220880:intron | 20.0% |
| !! | AGATATCATGTTAATTTAGA+TGG | + | chr8_1:84268368-84268387 | Msa1220880:intron | 20.0% |
| !!! | AATGGTCAAAATAAGAATTT+TGG | + | chr8_1:84268467-84268486 | Msa1220880:intron | 20.0% |
| !! | CACATTTGAATTAAAAATAG+AGG | - | chr8_1:84268774-84268793 | None:intergenic | 20.0% |
| !! | TATACCTACTATAAATTTGA+TGG | + | chr8_1:84269014-84269033 | Msa1220880:intron | 20.0% |
| !! | ATGATTTGATTGATTTCTGA+AGG | + | chr8_1:84264073-84264092 | Msa1220880:intron | 25.0% |
| !!! | TTGATTCACTTTTGAAAAAC+AGG | + | chr8_1:84264210-84264229 | Msa1220880:intron | 25.0% |
| ! | TGAATTGTTCAAATAACACT+CGG | - | chr8_1:84264240-84264259 | None:intergenic | 25.0% |
| !!! | AGTGTTATTTGAACAATTCA+AGG | + | chr8_1:84264240-84264259 | Msa1220880:five_prime_UTR | 25.0% |
| ! | AACATCTATGCAAATTAATC+AGG | - | chr8_1:84264331-84264350 | None:intergenic | 25.0% |
| !!! | AAAATATGTTTTGTTAGCAC+TGG | + | chr8_1:84264441-84264460 | Msa1220880:intron | 25.0% |
| !!! | CTACTAGGTTTTAACTTTTA+AGG | + | chr8_1:84264524-84264543 | Msa1220880:intron | 25.0% |
| ! | TATATTATGAAACTCTCACA+TGG | - | chr8_1:84264625-84264644 | None:intergenic | 25.0% |
| ! | AATAAATTACAAATGGAAGG+AGG | + | chr8_1:84264686-84264705 | Msa1220880:intron | 25.0% |
| !! | TGGTCTAGTTTATCATTATT+TGG | + | chr8_1:84264884-84264903 | Msa1220880:intron | 25.0% |
| ! | TTCCATTTGAAAATGCTTAA+TGG | - | chr8_1:84264953-84264972 | None:intergenic | 25.0% |
| !!! | AGAGAATGTTGATTTAAGAA+AGG | + | chr8_1:84265004-84265023 | Msa1220880:CDS | 25.0% |
| !!! | GAGAATGTTGATTTAAGAAA+GGG | + | chr8_1:84265005-84265024 | Msa1220880:CDS | 25.0% |
| ! | AAACGGCAAAATTTAATACT+AGG | - | chr8_1:84265326-84265345 | None:intergenic | 25.0% |
| ! | ACAGATTAGAATCATAGATT+AGG | + | chr8_1:84265382-84265401 | Msa1220880:intron | 25.0% |
| ! | GAGAGAAAATTCATCAAAAA+AGG | - | chr8_1:84265528-84265547 | None:intergenic | 25.0% |
| !! | TCTTATTATCTCTTTTCATC+CGG | + | chr8_1:84265589-84265608 | Msa1220880:intron | 25.0% |
| ! | TAGAGAAAATACAAACAACA+AGG | - | chr8_1:84265855-84265874 | None:intergenic | 25.0% |
| !!! | TTAAGTTTGTTACAATGTGT+TGG | - | chr8_1:84265885-84265904 | None:intergenic | 25.0% |
| !!! | ACTTAGTAAGCTTTATTTTG+AGG | + | chr8_1:84265906-84265925 | Msa1220880:intron | 25.0% |
| !!! | CTTAGTAAGCTTTATTTTGA+GGG | + | chr8_1:84265907-84265926 | Msa1220880:intron | 25.0% |
| !!! | TTAGTAAGCTTTATTTTGAG+GGG | + | chr8_1:84265908-84265927 | Msa1220880:intron | 25.0% |
| ! | TATAGATTAGGATTTGGATT+AGG | + | chr8_1:84265983-84266002 | Msa1220880:intron | 25.0% |
| ! | TTTATCAAATTTGGCTAAAC+TGG | + | chr8_1:84266130-84266149 | Msa1220880:intron | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | - | chr8_1:84266346-84266365 | None:intergenic | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | + | chr8_1:84266350-84266369 | Msa1220880:intron | 25.0% |
| ! | AACTATTAGGAAAGATTTAG+AGG | - | chr8_1:84266390-84266409 | None:intergenic | 25.0% |
| ! | AGACTATAAGAGAAACTATT+AGG | - | chr8_1:84266403-84266422 | None:intergenic | 25.0% |
| ! | TTATGATGCAACAATTACAA+AGG | - | chr8_1:84266456-84266475 | None:intergenic | 25.0% |
| ! | CTTTCATCAATTATACAAAG+AGG | - | chr8_1:84266489-84266508 | None:intergenic | 25.0% |
| !!! | TCACTTTTGTTTGATAACTT+TGG | - | chr8_1:84266588-84266607 | None:intergenic | 25.0% |
| ! | ATTACTAGTATTTCAATCCT+AGG | - | chr8_1:84266743-84266762 | None:intergenic | 25.0% |
| ! | CATTGTATTTGATAAATGCA+TGG | - | chr8_1:84266778-84266797 | None:intergenic | 25.0% |
| !!! | TTTTCGTTTTTATTTTTGGG+TGG | - | chr8_1:84266933-84266952 | None:intergenic | 25.0% |
| !! | GATGAAAATTGGACTTTTAA+TGG | + | chr8_1:84266967-84266986 | Msa1220880:intron | 25.0% |
| !! | TATATCGATATAATGGAAGT+CGG | - | chr8_1:84267101-84267120 | None:intergenic | 25.0% |
| ! | AGAATAGACTCATTAAATAC+TGG | + | chr8_1:84267264-84267283 | Msa1220880:intron | 25.0% |
| !! | TATGCAACAATTCTCTATTT+TGG | + | chr8_1:84267641-84267660 | Msa1220880:CDS | 25.0% |
| !! | ATGCAACAATTCTCTATTTT+GGG | + | chr8_1:84267642-84267661 | Msa1220880:CDS | 25.0% |
| !!! | TCTATTTTGGGAATCATTAT+CGG | + | chr8_1:84267654-84267673 | Msa1220880:CDS | 25.0% |
| ! | TAACTTGATACGAAAAAGAA+AGG | - | chr8_1:84268172-84268191 | None:intergenic | 25.0% |
| ! | ACACAAATTTGTATCAAAAG+TGG | - | chr8_1:84268247-84268266 | None:intergenic | 25.0% |
| ! | TTTAAAAACGTCAACAATGT+TGG | - | chr8_1:84268510-84268529 | None:intergenic | 25.0% |
| !!! | AGGAAGATTTTTTTAACAGA+AGG | - | chr8_1:84268750-84268769 | None:intergenic | 25.0% |
| ! | TTTGAATTAAAAATAGAGGG+AGG | - | chr8_1:84268770-84268789 | None:intergenic | 25.0% |
| !!! | TTTTAATTCAAATGTGAAGG+TGG | + | chr8_1:84268778-84268797 | Msa1220880:intron | 25.0% |
| ! | GTATATAACAGCTTCAATAT+AGG | + | chr8_1:84268866-84268885 | Msa1220880:intron | 25.0% |
| !! | TTTGTTGATTCAAGTCAACA+AGG | + | chr8_1:84264029-84264048 | Msa1220880:five_prime_UTR | 30.0% |
| TGAGATCAGATATATGCATT+TGG | - | chr8_1:84264104-84264123 | None:intergenic | 30.0% | |
| ! | CAAAGTATCTACAAAATCCA+TGG | + | chr8_1:84264273-84264292 | Msa1220880:exon | 30.0% |
| TCTACAAAATCCATGGATAA+AGG | + | chr8_1:84264280-84264299 | Msa1220880:exon | 30.0% | |
| TGATGTGAATTCAGAAATTG+TGG | + | chr8_1:84264746-84264765 | Msa1220880:intron | 30.0% | |
| TTGAAAATGCTTAATGGAGA+TGG | - | chr8_1:84264947-84264966 | None:intergenic | 30.0% | |
| ! | CTCCATTAAGCATTTTCAAA+TGG | + | chr8_1:84264948-84264967 | Msa1220880:intron | 30.0% |
| GTAATTCAAGAGGTAACAAT+AGG | + | chr8_1:84265090-84265109 | Msa1220880:intron | 30.0% | |
| !!! | GTCAGTTCTTATTTTGTTAG+TGG | + | chr8_1:84265190-84265209 | Msa1220880:intron | 30.0% |
| !!! | AGTTCTTATTTTGTTAGTGG+AGG | + | chr8_1:84265193-84265212 | Msa1220880:intron | 30.0% |
| GGATTTGATTAGGATTGATA+AGG | - | chr8_1:84265305-84265324 | None:intergenic | 30.0% | |
| GGATGAAAAGAGATAATAAG+AGG | - | chr8_1:84265590-84265609 | None:intergenic | 30.0% | |
| TCACTATAGCAAAGACAATT+GGG | - | chr8_1:84265795-84265814 | None:intergenic | 30.0% | |
| !!! | TAGTAAGCTTTATTTTGAGG+GGG | + | chr8_1:84265909-84265928 | Msa1220880:intron | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | - | chr8_1:84266366-84266385 | None:intergenic | 30.0% |
| AGATTTAGAGGTTAATGAGT+TGG | - | chr8_1:84266378-84266397 | None:intergenic | 30.0% | |
| !! | TTTGATAACTTTGGTTCTAC+TGG | - | chr8_1:84266579-84266598 | None:intergenic | 30.0% |
| ! | GAGATTCTTATTTATAGCCT+AGG | + | chr8_1:84266723-84266742 | Msa1220880:intron | 30.0% |
| TTTGATAAATGCATGGTAGT+GGG | - | chr8_1:84266771-84266790 | None:intergenic | 30.0% | |
| ATTTGATAAATGCATGGTAG+TGG | - | chr8_1:84266772-84266791 | None:intergenic | 30.0% | |
| AAGTCATTATAGTTGCTAGT+GGG | - | chr8_1:84266851-84266870 | None:intergenic | 30.0% | |
| TAAGTCATTATAGTTGCTAG+TGG | - | chr8_1:84266852-84266871 | None:intergenic | 30.0% | |
| ATCAAAGTCAAAAGACAAAG+GGG | - | chr8_1:84267137-84267156 | None:intergenic | 30.0% | |
| GATCAAAGTCAAAAGACAAA+GGG | - | chr8_1:84267138-84267157 | None:intergenic | 30.0% | |
| AGATCAAAGTCAAAAGACAA+AGG | - | chr8_1:84267139-84267158 | None:intergenic | 30.0% | |
| !!! | TGTCTTTTGACTTTGATCTT+AGG | + | chr8_1:84267140-84267159 | Msa1220880:intron | 30.0% |
| !!! | GTCTTTTGACTTTGATCTTA+GGG | + | chr8_1:84267141-84267160 | Msa1220880:intron | 30.0% |
| AGTGCAAGTAGTTATTTGAA+GGG | - | chr8_1:84267360-84267379 | None:intergenic | 30.0% | |
| AAGTGCAAGTAGTTATTTGA+AGG | - | chr8_1:84267361-84267380 | None:intergenic | 30.0% | |
| ATAACTACTTGCACTTTATG+TGG | + | chr8_1:84267365-84267384 | Msa1220880:intron | 30.0% | |
| TACACACAAATAGACAAGAA+GGG | - | chr8_1:84267752-84267771 | None:intergenic | 30.0% | |
| ATACACACAAATAGACAAGA+AGG | - | chr8_1:84267753-84267772 | None:intergenic | 30.0% | |
| GTTAAACTGCTAAATAGAGT+TGG | + | chr8_1:84267828-84267847 | Msa1220880:intron | 30.0% | |
| TCAAATAAACAAGGAAGCTT+TGG | + | chr8_1:84267901-84267920 | Msa1220880:intron | 30.0% | |
| GTATTTGATCCATGAAAACA+TGG | - | chr8_1:84267944-84267963 | None:intergenic | 30.0% | |
| TTATGCCAGCTTAAATGATA+TGG | - | chr8_1:84268002-84268021 | None:intergenic | 30.0% | |
| !! | AGTGGACTAAGAATAAAAAC+TGG | - | chr8_1:84268229-84268248 | None:intergenic | 30.0% |
| AGATATTGCAACAGTCATTA+TGG | + | chr8_1:84268394-84268413 | Msa1220880:intron | 30.0% | |
| TAGCGATGTCTAAATTGTTA+TGG | + | chr8_1:84268669-84268688 | Msa1220880:intron | 30.0% | |
| CACACCATCAAATTTATAGT+AGG | - | chr8_1:84269021-84269040 | None:intergenic | 30.0% | |
| !!! | CGTTTCTTCGTTACTTTTTC+TGG | + | chr8_1:84263869-84263888 | Msa1220880:five_prime_UTR | 35.0% |
| TAGAAGCAGCAGATAAATAC+AGG | - | chr8_1:84264154-84264173 | None:intergenic | 35.0% | |
| CATTTCAGTACCTTTATCCA+TGG | - | chr8_1:84264293-84264312 | None:intergenic | 35.0% | |
| TTACCTATGCATCGAAATCA+CGG | - | chr8_1:84264422-84264441 | None:intergenic | 35.0% | |
| GTTTGTATGATTGAGCTACT+AGG | + | chr8_1:84264509-84264528 | Msa1220880:intron | 35.0% | |
| TTAAATGCTAACAACAGCTC+AGG | - | chr8_1:84264578-84264597 | None:intergenic | 35.0% | |
| AAATTACAAATGGAAGGAGG+AGG | + | chr8_1:84264689-84264708 | Msa1220880:intron | 35.0% | |
| !! | ATTTCCTTTGTTGTTGCAGA+TGG | + | chr8_1:84264972-84264991 | Msa1220880:intron | 35.0% |
| !!! | CTTATTTTGTTAGTGGAGGA+AGG | + | chr8_1:84265197-84265216 | Msa1220880:intron | 35.0% |
| ! | TAGAGTGATAAAGCGTTCAA+AGG | - | chr8_1:84265227-84265246 | None:intergenic | 35.0% |
| ! | AATTTTCTCTCTCCTCTACA+AGG | + | chr8_1:84265537-84265556 | Msa1220880:intron | 35.0% |
| ! | CTGGTTGAATCAAATTTTCC+CGG | - | chr8_1:84265707-84265726 | None:intergenic | 35.0% |
| GTCACTATAGCAAAGACAAT+TGG | - | chr8_1:84265796-84265815 | None:intergenic | 35.0% | |
| !! | ACTTATAGTCTTGGTTCTAC+CGG | - | chr8_1:84266629-84266648 | None:intergenic | 35.0% |
| GGGTTAAGAACTTATAGTCT+TGG | - | chr8_1:84266638-84266657 | None:intergenic | 35.0% | |
| AGTTCTTAACCCAAGAACAA+AGG | + | chr8_1:84266646-84266665 | Msa1220880:intron | 35.0% | |
| ! | AGAGCTTTTCCTTTGTTCTT+GGG | - | chr8_1:84266658-84266677 | None:intergenic | 35.0% |
| ! | CATGTTAGTGCCTATTTTCT+AGG | - | chr8_1:84266819-84266838 | None:intergenic | 35.0% |
| !! | CTACTTTGAAGCATTTAGAG+AGG | + | chr8_1:84266877-84266896 | Msa1220880:intron | 35.0% |
| TCAAAGTCAAAAGACAAAGG+GGG | - | chr8_1:84267136-84267155 | None:intergenic | 35.0% | |
| CTGCACATTATCTCTAAACT+AGG | - | chr8_1:84267246-84267265 | None:intergenic | 35.0% | |
| ATTGTTGCATAGAACCACAT+AGG | - | chr8_1:84267632-84267651 | None:intergenic | 35.0% | |
| !! | TTTTGGGAATCATTATCGGA+AGG | + | chr8_1:84267658-84267677 | Msa1220880:CDS | 35.0% |
| CTGAGCTAATAGTATTTACC+TGG | - | chr8_1:84267865-84267884 | None:intergenic | 35.0% | |
| ! | TGAAAACATGGTTTGTCAAC+TGG | - | chr8_1:84267932-84267951 | None:intergenic | 35.0% |
| ! | GTTGACAAACCATGTTTTCA+TGG | + | chr8_1:84267932-84267951 | Msa1220880:intron | 35.0% |
| ACAAGCCATATCATTTAAGC+TGG | + | chr8_1:84267994-84268013 | Msa1220880:intron | 35.0% | |
| TCACAACTTATAGCAACTCA+AGG | - | chr8_1:84268028-84268047 | None:intergenic | 35.0% | |
| ! | TTGAGTTGCTATAAGTTGTG+AGG | + | chr8_1:84268027-84268046 | Msa1220880:intron | 35.0% |
| GTAACATGAGATATCTGCAA+TGG | - | chr8_1:84268083-84268102 | None:intergenic | 35.0% | |
| !!! | ATTTTTGGCGAAACTACGTT+AGG | + | chr8_1:84268106-84268125 | Msa1220880:intron | 35.0% |
| TGTTATGGTGATAAACTTGC+AGG | + | chr8_1:84268684-84268703 | Msa1220880:intron | 35.0% | |
| ACATTTGAAAGCGATTCTGA+CGG | + | chr8_1:84268817-84268836 | Msa1220880:intron | 35.0% | |
| !!! | AAGTTGCGTTTTGTTTGTGA+AGG | + | chr8_1:84268898-84268917 | Msa1220880:intron | 35.0% |
| GCAGCAGATAAATACAGGAA+AGG | - | chr8_1:84264149-84264168 | None:intergenic | 40.0% | |
| TGGAGGAATAATCATCAGTC+TGG | - | chr8_1:84264663-84264682 | None:intergenic | 40.0% | |
| AGTAATACGTATCACCAGAG+TGG | + | chr8_1:84264836-84264855 | Msa1220880:intron | 40.0% | |
| AGACCATAGACTTGAAAGCT+TGG | - | chr8_1:84264870-84264889 | None:intergenic | 40.0% | |
| !! | CTTTGTTGTTGCAGATGGTA+GGG | + | chr8_1:84264977-84264996 | Msa1220880:intron | 40.0% |
| !! | TGTTGATTTAAGAAAGGGCG+TGG | + | chr8_1:84265010-84265029 | Msa1220880:CDS | 40.0% |
| ! | TTTAAGAAAGGGCGTGGAAT+CGG | + | chr8_1:84265016-84265035 | Msa1220880:CDS | 40.0% |
| !!! | ATCTTTTAAGGCCCTTTGCT+CGG | + | chr8_1:84265066-84265085 | Msa1220880:CDS | 40.0% |
| CTTGAATTACTCCGAGCAAA+GGG | - | chr8_1:84265080-84265099 | None:intergenic | 40.0% | |
| TCTTGAATTACTCCGAGCAA+AGG | - | chr8_1:84265081-84265100 | None:intergenic | 40.0% | |
| TTTGCTCGGAGTAATTCAAG+AGG | + | chr8_1:84265080-84265099 | Msa1220880:CDS | 40.0% | |
| !! | ATAAGGCGACTTGGTGATTT+GGG | - | chr8_1:84265288-84265307 | None:intergenic | 40.0% |
| TTAGGATTGATAAGGCGACT+TGG | - | chr8_1:84265297-84265316 | None:intergenic | 40.0% | |
| TACAAGGATCTGCTATGGTT+TGG | + | chr8_1:84265553-84265572 | Msa1220880:intron | 40.0% | |
| AGTAGGACAAAAACGTTGAC+CGG | - | chr8_1:84265611-84265630 | None:intergenic | 40.0% | |
| ! | TTTTCGAAAATGGGTCTCAC+TGG | - | chr8_1:84265741-84265760 | None:intergenic | 40.0% |
| ! | GACTGGTGGTTTTCGAAAAT+GGG | - | chr8_1:84265750-84265769 | None:intergenic | 40.0% |
| ! | TGACTGGTGGTTTTCGAAAA+TGG | - | chr8_1:84265751-84265770 | None:intergenic | 40.0% |
| ATGATTTCAAAGGTGACTGG+TGG | - | chr8_1:84265764-84265783 | None:intergenic | 40.0% | |
| TGGATGATTTCAAAGGTGAC+TGG | - | chr8_1:84265767-84265786 | None:intergenic | 40.0% | |
| TCCAGTTGTGCTACCATTTA+CGG | + | chr8_1:84265817-84265836 | Msa1220880:intron | 40.0% | |
| AACAACCAAGCCTTACTAAG+TGG | + | chr8_1:84266295-84266314 | Msa1220880:intron | 40.0% | |
| ACAACCAAGCCTTACTAAGT+GGG | + | chr8_1:84266296-84266315 | Msa1220880:intron | 40.0% | |
| GAAATTGATACGTGACCGAT+AGG | + | chr8_1:84266508-84266527 | Msa1220880:intron | 40.0% | |
| !! | TGTTTTCAAGACGGTCCTAT+CGG | - | chr8_1:84266526-84266545 | None:intergenic | 40.0% |
| !! | TTCCTTGCCTGTTTTCAAGA+CGG | - | chr8_1:84266535-84266554 | None:intergenic | 40.0% |
| !! | ATAACTTTGGTTCTACTGGC+AGG | - | chr8_1:84266575-84266594 | None:intergenic | 40.0% |
| ! | GAGAGCTTTTCCTTTGTTCT+TGG | - | chr8_1:84266659-84266678 | None:intergenic | 40.0% |
| ! | TTGAAGCATTTAGAGAGGCT+AGG | + | chr8_1:84266882-84266901 | Msa1220880:intron | 40.0% |
| TCAAGAGTTCACTAAGCATG+TGG | - | chr8_1:84267026-84267045 | None:intergenic | 40.0% | |
| TGCCTTAATTAGAGATCCAG+AGG | + | chr8_1:84267431-84267450 | Msa1220880:CDS | 40.0% | |
| GTCCTCTGGATCTCTAATTA+AGG | - | chr8_1:84267436-84267455 | None:intergenic | 40.0% | |
| GCTTATCATAAAGTCCTGAC+TGG | - | chr8_1:84267461-84267480 | None:intergenic | 40.0% | |
| GATTTATTTGCCCTCCTATG+TGG | + | chr8_1:84267615-84267634 | Msa1220880:CDS | 40.0% | |
| TTGCATAGAACCACATAGGA+GGG | - | chr8_1:84267628-84267647 | None:intergenic | 40.0% | |
| AGAGATTACAGCAATTGCAG+AGG | - | chr8_1:84267711-84267730 | None:intergenic | 40.0% | |
| CATTTGTGAATGCATGCATG+AGG | - | chr8_1:84267786-84267805 | None:intergenic | 40.0% | |
| GATATCTGCAATGGCAGAAA+AGG | - | chr8_1:84268074-84268093 | None:intergenic | 40.0% | |
| ATCTGATTGTGACCTCATTG+TGG | - | chr8_1:84268338-84268357 | None:intergenic | 40.0% | |
| ATGTCTGCTACACTGAAAGT+TGG | + | chr8_1:84268937-84268956 | Msa1220880:intron | 40.0% | |
| TGTCTGCTACACTGAAAGTT+GGG | + | chr8_1:84268938-84268957 | Msa1220880:intron | 40.0% | |
| AGTTGGGAGAAAATGATACG+TGG | + | chr8_1:84268954-84268973 | Msa1220880:intron | 40.0% | |
| TATGCATCGAAATCACGGCA+AGG | - | chr8_1:84264417-84264436 | None:intergenic | 45.0% | |
| TTGCCGTGATTTCGATGCAT+AGG | + | chr8_1:84264416-84264435 | Msa1220880:intron | 45.0% | |
| !! | TTAGCACTGGTGTGATAAGC+AGG | + | chr8_1:84264454-84264473 | Msa1220880:intron | 45.0% |
| !! | TAGCACTGGTGTGATAAGCA+GGG | + | chr8_1:84264455-84264474 | Msa1220880:intron | 45.0% |
| ! | AGGAGGTGTGTTCATTCATC+AGG | + | chr8_1:84264706-84264725 | Msa1220880:intron | 45.0% |
| ! | GCTCCAAGCTTTCAAGTCTA+TGG | + | chr8_1:84264864-84264883 | Msa1220880:intron | 45.0% |
| TGGTTGACTGAGCAAAAGTG+TGG | + | chr8_1:84264909-84264928 | Msa1220880:intron | 45.0% | |
| CCTACCATCTGCAACAACAA+AGG | - | chr8_1:84264979-84264998 | None:intergenic | 45.0% | |
| !! | CCTTTGTTGTTGCAGATGGT+AGG | + | chr8_1:84264976-84264995 | Msa1220880:intron | 45.0% |
| !! | GTAAGGCGACTTGGTGATTT+GGG | - | chr8_1:84265266-84265285 | None:intergenic | 45.0% |
| !! | GATAAGGCGACTTGGTGATT+TGG | - | chr8_1:84265289-84265308 | None:intergenic | 45.0% |
| GCCTAAGTGGAAGTTATGCT+CGG | - | chr8_1:84265463-84265482 | None:intergenic | 45.0% | |
| AAATCATCCAGTAGCTGCAG+TGG | - | chr8_1:84265497-84265516 | None:intergenic | 45.0% | |
| TCCTCTACAAGGATCTGCTA+TGG | + | chr8_1:84265548-84265567 | Msa1220880:intron | 45.0% | |
| ACCATAGCAGATCCTTGTAG+AGG | - | chr8_1:84265552-84265571 | None:intergenic | 45.0% | |
| GCACAATGAATGTGCACAGT+AGG | - | chr8_1:84265639-84265658 | None:intergenic | 45.0% | |
| ACTGACGTGAAAGAGAAGCA+AGG | - | chr8_1:84265668-84265687 | None:intergenic | 45.0% | |
| TTGCTTCTCTTTCACGTCAG+TGG | + | chr8_1:84265667-84265686 | Msa1220880:intron | 45.0% | |
| TGCTTCTCTTTCACGTCAGT+GGG | + | chr8_1:84265668-84265687 | Msa1220880:intron | 45.0% | |
| ! | AGTGGGTTTCTCTTTGCATC+CGG | + | chr8_1:84265685-84265704 | Msa1220880:intron | 45.0% |
| GGCTCACTGGATGATTTCAA+AGG | - | chr8_1:84265774-84265793 | None:intergenic | 45.0% | |
| GTAAATGGTAGCACAACTGG+AGG | - | chr8_1:84265818-84265837 | None:intergenic | 45.0% | |
| GAGGTGAGTGTAGTCTGATT+TGG | + | chr8_1:84266051-84266070 | Msa1220880:intron | 45.0% | |
| TCCACACATGTACTTGTGAG+AGG | + | chr8_1:84266180-84266199 | Msa1220880:intron | 45.0% | |
| CCACACATGTACTTGTGAGA+GGG | + | chr8_1:84266181-84266200 | Msa1220880:intron | 45.0% | |
| CACACATGTACTTGTGAGAG+GGG | + | chr8_1:84266182-84266201 | Msa1220880:intron | 45.0% | |
| CAACCAAGCCTTACTAAGTG+GGG | + | chr8_1:84266297-84266316 | Msa1220880:intron | 45.0% | |
| TTGAGCACGTAACACACTCA+AGG | - | chr8_1:84266429-84266448 | None:intergenic | 45.0% | |
| GATAGGACCGTCTTGAAAAC+AGG | + | chr8_1:84266525-84266544 | Msa1220880:intron | 45.0% | |
| GAGTTCACTAAGCATGTGGA+AGG | - | chr8_1:84267022-84267041 | None:intergenic | 45.0% | |
| GTTCTGCACGTCATTTACAG+CGG | + | chr8_1:84267066-84267085 | Msa1220880:intron | 45.0% | |
| GTCAAAAGACAAAGGGGGAA+TGG | - | chr8_1:84267131-84267150 | None:intergenic | 45.0% | |
| CTACTTGCACTTTATGTGGC+AGG | + | chr8_1:84267369-84267388 | Msa1220880:intron | 45.0% | |
| CAATTCCGCATCCAAAGCAT+GGG | - | chr8_1:84267488-84267507 | None:intergenic | 45.0% | |
| CAATCATAGCAGCGAGCAAA+TGG | - | chr8_1:84267548-84267567 | None:intergenic | 45.0% | |
| GTTGCATAGAACCACATAGG+AGG | - | chr8_1:84267629-84267648 | None:intergenic | 45.0% | |
| AAGAAGGGAGCAGAGAGAAA+GGG | - | chr8_1:84267737-84267756 | None:intergenic | 45.0% | |
| !! | GAGTTGGTTTGAACATAGCC+AGG | + | chr8_1:84267844-84267863 | Msa1220880:intron | 45.0% |
| TGGCAGAAAAGGAACTTGGT+TGG | - | chr8_1:84268063-84268082 | None:intergenic | 45.0% | |
| GCAATGGCAGAAAAGGAACT+TGG | - | chr8_1:84268067-84268086 | None:intergenic | 45.0% | |
| !! | GTCTAATTGGTGGTGATGAG+TGG | - | chr8_1:84268305-84268324 | None:intergenic | 45.0% |
| TCATCAAGGGGTCTAATTGG+TGG | - | chr8_1:84268315-84268334 | None:intergenic | 45.0% | |
| TGGTCATCAAGGGGTCTAAT+TGG | - | chr8_1:84268318-84268337 | None:intergenic | 45.0% | |
| ACCTCATTGTGGTCATCAAG+GGG | - | chr8_1:84268327-84268346 | None:intergenic | 45.0% | |
| GACCTCATTGTGGTCATCAA+GGG | - | chr8_1:84268328-84268347 | None:intergenic | 45.0% | |
| TGACCTCATTGTGGTCATCA+AGG | - | chr8_1:84268329-84268348 | None:intergenic | 45.0% | |
| !! | AGCACTGGTGTGATAAGCAG+GGG | + | chr8_1:84264456-84264475 | Msa1220880:intron | 50.0% |
| ACGTATCACCAGAGTGGTCT+TGG | + | chr8_1:84264842-84264861 | Msa1220880:intron | 50.0% | |
| TGTTGTTGCAGATGGTAGGG+TGG | + | chr8_1:84264980-84264999 | Msa1220880:intron | 50.0% | |
| !! | GGTAAGGCGACTTGGTGATT+TGG | - | chr8_1:84265267-84265286 | None:intergenic | 50.0% |
| ! | GTGATTTGGGTAAGGCGACT+TGG | - | chr8_1:84265275-84265294 | None:intergenic | 50.0% |
| !! | GCGACTTGGTGATTTGGGTA+AGG | - | chr8_1:84265283-84265302 | None:intergenic | 50.0% |
| GCCGAGCATAACTTCCACTT+AGG | + | chr8_1:84265459-84265478 | Msa1220880:intron | 50.0% | |
| GTGCACAGTAGGACAGAAGT+AGG | - | chr8_1:84265628-84265647 | None:intergenic | 50.0% | |
| GTGGGTTTCTCTTTGCATCC+GGG | + | chr8_1:84265686-84265705 | Msa1220880:intron | 50.0% | |
| GCAAAGACAATTGGGCTCAC+TGG | - | chr8_1:84265787-84265806 | None:intergenic | 50.0% | |
| GCCGTAAATGGTAGCACAAC+TGG | - | chr8_1:84265821-84265840 | None:intergenic | 50.0% | |
| GTCGTAGCTTCAGCCGTAAA+TGG | - | chr8_1:84265833-84265852 | None:intergenic | 50.0% | |
| CCCTCTCACAAGTACATGTG+TGG | - | chr8_1:84266184-84266203 | None:intergenic | 50.0% | |
| CAAGCCTTACTAAGTGGGGT+CGG | + | chr8_1:84266301-84266320 | Msa1220880:intron | 50.0% | |
| GACCGTCTTGAAAACAGGCA+AGG | + | chr8_1:84266530-84266549 | Msa1220880:intron | 50.0% | |
| !! | ATAGTCTTGGTTCTACCGGC+AGG | - | chr8_1:84266625-84266644 | None:intergenic | 50.0% |
| CTTTATGTGGCAGGACAAGC+AGG | + | chr8_1:84267378-84267397 | Msa1220880:intron | 50.0% | |
| AGGACAAGCAGGAGATCCAA+TGG | + | chr8_1:84267389-84267408 | Msa1220880:intron | 50.0% | |
| AGATCCAATGGCTCACGGAA+AGG | + | chr8_1:84267401-84267420 | Msa1220880:CDS | 50.0% | |
| GATCCAATGGCTCACGGAAA+GGG | + | chr8_1:84267402-84267421 | Msa1220880:CDS | 50.0% | |
| TTTCCCTTTCCGTGAGCCAT+TGG | - | chr8_1:84267408-84267427 | None:intergenic | 50.0% | |
| CCAATTCCGCATCCAAAGCA+TGG | - | chr8_1:84267489-84267508 | None:intergenic | 50.0% | |
| ! | CCATGCTTTGGATGCGGAAT+TGG | + | chr8_1:84267486-84267505 | Msa1220880:CDS | 50.0% |
| ! | GCTTTGGATGCGGAATTGGA+TGG | + | chr8_1:84267490-84267509 | Msa1220880:CDS | 50.0% |
| TAGCAGCGAGCAAATGGAGA+AGG | - | chr8_1:84267542-84267561 | None:intergenic | 50.0% | |
| ATCATTATCGGAAGGACCCC+AGG | + | chr8_1:84267666-84267685 | Msa1220880:CDS | 50.0% | |
| TCATTATCGGAAGGACCCCA+GGG | + | chr8_1:84267667-84267686 | Msa1220880:CDS | 50.0% | |
| CAAGAAGGGAGCAGAGAGAA+AGG | - | chr8_1:84267738-84267757 | None:intergenic | 50.0% | |
| ! | ACCCCTTGATGACCACAATG+AGG | + | chr8_1:84268323-84268342 | Msa1220880:intron | 50.0% |
| CTTGCAGGCATTAGTGTGCT+CGG | + | chr8_1:84268699-84268718 | Msa1220880:intron | 50.0% | |
| AGGCATTAGTGTGCTCGGTA+GGG | + | chr8_1:84268704-84268723 | Msa1220880:intron | 50.0% | |
| ! | GTAGCAGACATTTTCAGCGC+TGG | - | chr8_1:84268928-84268947 | None:intergenic | 50.0% |
| ! | GCAAAAGTGTGGAGTTCGCG+AGG | + | chr8_1:84264920-84264939 | Msa1220880:intron | 55.0% |
| !! | GCGACTTGGTGATTTGGGTG+AGG | - | chr8_1:84265261-84265280 | None:intergenic | 55.0% |
| GTGGAAGTTATGCTCGGCAG+AGG | - | chr8_1:84265457-84265476 | None:intergenic | 55.0% | |
| ! | CTCACTGGAGAAAGTGCAGC+TGG | - | chr8_1:84265726-84265745 | None:intergenic | 55.0% |
| CGACCCCACTTAGTAAGGCT+TGG | - | chr8_1:84266303-84266322 | None:intergenic | 55.0% | |
| GTAGCCGACCCCACTTAGTA+AGG | - | chr8_1:84266308-84266327 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | + | chr8_1:84266309-84266328 | Msa1220880:intron | 55.0% | |
| !! | TTGGTTCTACTGGCAGGTCG+CGG | - | chr8_1:84266569-84266588 | None:intergenic | 55.0% |
| GCAGGAGATCCAATGGCTCA+CGG | + | chr8_1:84267396-84267415 | Msa1220880:CDS | 55.0% | |
| GATCCAGAGGACTTCCAGTC+AGG | + | chr8_1:84267444-84267463 | Msa1220880:CDS | 55.0% | |
| AGTCCTGACTGGAAGTCCTC+TGG | - | chr8_1:84267450-84267469 | None:intergenic | 55.0% | |
| GATAAGCCCCTCCCATGCTT+TGG | + | chr8_1:84267474-84267493 | Msa1220880:CDS | 55.0% | |
| TCCGCATCCAAAGCATGGGA+GGG | - | chr8_1:84267484-84267503 | None:intergenic | 55.0% | |
| TTCCGCATCCAAAGCATGGG+AGG | - | chr8_1:84267485-84267504 | None:intergenic | 55.0% | |
| CAGGCATTAGTGTGCTCGGT+AGG | + | chr8_1:84268703-84268722 | Msa1220880:intron | 55.0% | |
| GCTTGGAGCCAAGACCACTC+TGG | - | chr8_1:84264853-84264872 | None:intergenic | 60.0% | |
| GGCAGCAGTAGGTGCCTAAG+TGG | - | chr8_1:84265476-84265495 | None:intergenic | 60.0% | |
| GTAGCTGCAGTGGCAGCAGT+AGG | - | chr8_1:84265487-84265506 | None:intergenic | 60.0% | |
| ACTGCTGCCACTGCAGCTAC+TGG | + | chr8_1:84265487-84265506 | Msa1220880:intron | 60.0% | |
| CTACTGGCAGGTCGCGGTTA+GGG | - | chr8_1:84266563-84266582 | None:intergenic | 60.0% | |
| TCTACTGGCAGGTCGCGGTT+AGG | - | chr8_1:84266564-84266583 | None:intergenic | 60.0% | |
| !! | TTGGTTCTACCGGCAGGTCG+CGG | - | chr8_1:84266619-84266638 | None:intergenic | 60.0% |
| CCGCATCCAAAGCATGGGAG+GGG | - | chr8_1:84267483-84267502 | None:intergenic | 60.0% | |
| ! | CCCCTCCCATGCTTTGGATG+CGG | + | chr8_1:84267480-84267499 | Msa1220880:CDS | 60.0% |
| ATCGGAAGGACCCCAGGGAA+CGG | + | chr8_1:84267672-84267691 | Msa1220880:CDS | 60.0% | |
| AGACCCTAACCGCGACCTGC+CGG | + | chr8_1:84266607-84266626 | Msa1220880:intron | 65.0% | |
| CTACCGGCAGGTCGCGGTTA+GGG | - | chr8_1:84266613-84266632 | None:intergenic | 65.0% | |
| TCTACCGGCAGGTCGCGGTT+AGG | - | chr8_1:84266614-84266633 | None:intergenic | 65.0% | |
| TCGGAAGGACCCCAGGGAAC+GGG | + | chr8_1:84267673-84267692 | Msa1220880:CDS | 65.0% | |
| GAAGGACCCCAGGGAACGGG+CGG | + | chr8_1:84267676-84267695 | Msa1220880:CDS | 70.0% | |
| AAGGACCCCAGGGAACGGGC+GGG | + | chr8_1:84267677-84267696 | Msa1220880:CDS | 70.0% | |
| AGGACCCCAGGGAACGGGCG+GGG | + | chr8_1:84267678-84267697 | Msa1220880:CDS | 75.0% | |
| ! | CCAGCCCCGCCCGTTCCCTG+GGG | - | chr8_1:84267685-84267704 | None:intergenic | 80.0% |
| ! | CCCAGCCCCGCCCGTTCCCT+GGG | - | chr8_1:84267686-84267705 | None:intergenic | 80.0% |
| ! | CCCAGGGAACGGGCGGGGCT+GGG | + | chr8_1:84267683-84267702 | Msa1220880:CDS | 80.0% |
| ! | TCCCAGCCCCGCCCGTTCCC+TGG | - | chr8_1:84267687-84267706 | None:intergenic | 80.0% |
| ! | CCCCAGGGAACGGGCGGGGC+TGG | + | chr8_1:84267682-84267701 | Msa1220880:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 84263828 | 84269076 | 84263828 | ID=Msa1220880;Name=Msa1220880 |
| chr8_1 | mRNA | 84263828 | 84269076 | 84263828 | ID=Msa1220880-mRNA-1;Parent=Msa1220880;Name=Msa1220880-mRNA-1;_AED=0.28;_eAED=0.29;_QI=283|0.8|0.83|1|0.6|0.5|6|0|126 |
| chr8_1 | exon | 84263828 | 84264050 | 84263828 | ID=Msa1220880-mRNA-1:exon:30221;Parent=Msa1220880-mRNA-1 |
| chr8_1 | exon | 84264232 | 84264301 | 84264232 | ID=Msa1220880-mRNA-1:exon:30222;Parent=Msa1220880-mRNA-1 |
| chr8_1 | exon | 84264991 | 84265101 | 84264991 | ID=Msa1220880-mRNA-1:exon:30223;Parent=Msa1220880-mRNA-1 |
| chr8_1 | exon | 84267391 | 84267517 | 84267391 | ID=Msa1220880-mRNA-1:exon:30224;Parent=Msa1220880-mRNA-1 |
| chr8_1 | exon | 84267604 | 84267721 | 84267604 | ID=Msa1220880-mRNA-1:exon:30225;Parent=Msa1220880-mRNA-1 |
| chr8_1 | exon | 84269065 | 84269076 | 84269065 | ID=Msa1220880-mRNA-1:exon:30226;Parent=Msa1220880-mRNA-1 |
| chr8_1 | five_prime_UTR | 84263828 | 84264050 | 84263828 | ID=Msa1220880-mRNA-1:five_prime_utr;Parent=Msa1220880-mRNA-1 |
| chr8_1 | five_prime_UTR | 84264232 | 84264291 | 84264232 | ID=Msa1220880-mRNA-1:five_prime_utr;Parent=Msa1220880-mRNA-1 |
| chr8_1 | CDS | 84264292 | 84264301 | 84264292 | ID=Msa1220880-mRNA-1:cds;Parent=Msa1220880-mRNA-1 |
| chr8_1 | CDS | 84264991 | 84265101 | 84264991 | ID=Msa1220880-mRNA-1:cds;Parent=Msa1220880-mRNA-1 |
| chr8_1 | CDS | 84267391 | 84267517 | 84267391 | ID=Msa1220880-mRNA-1:cds;Parent=Msa1220880-mRNA-1 |
| chr8_1 | CDS | 84267604 | 84267721 | 84267604 | ID=Msa1220880-mRNA-1:cds;Parent=Msa1220880-mRNA-1 |
| chr8_1 | CDS | 84269065 | 84269076 | 84269065 | ID=Msa1220880-mRNA-1:cds;Parent=Msa1220880-mRNA-1 |
| Gene Sequence |
| Protein sequence |
