Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404270 | XP_013458443.1 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 7.04e-86 | 256 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404270 | I3SLJ0 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 3.36e-86 | 256 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0662520 | Msa1404270 | 0.961695 | 5.313541e-120 | -8.615850e-47 |
| Msa1266170 | Msa1404270 | 0.859195 | 4.891540e-63 | -8.615850e-47 |
| Msa1220860 | Msa1404270 | 0.870678 | 1.217321e-66 | -8.615850e-47 |
| Msa1220880 | Msa1404270 | 0.874174 | 8.299133e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404270 | MtrunA17_Chr4g0070831 | 96.032 | 126 | 5 | 0 | 1 | 126 | 1 | 126 | 6.47e-90 | 256 |
| Msa1404270 | MtrunA17_Chr8g0343111 | 74.603 | 63 | 16 | 0 | 51 | 113 | 8 | 70 | 2.35e-29 | 102 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1404270 | AT4G26060.1 | 58.879 | 107 | 42 | 1 | 18 | 124 | 14 | 118 | 5.63e-43 | 138 |
| Msa1404270 | AT5G57060.7 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa1404270 | AT5G57060.4 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa1404270 | AT5G57060.9 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa1404270 | AT5G57060.5 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa1404270 | AT5G57060.1 | 50.413 | 121 | 55 | 2 | 7 | 124 | 1 | 119 | 1.03e-38 | 127 |
| Msa1404270 | AT5G57060.3 | 53.704 | 108 | 48 | 1 | 17 | 124 | 23 | 128 | 4.93e-38 | 125 |
| Msa1404270 | AT5G57060.6 | 53.704 | 108 | 48 | 1 | 17 | 124 | 23 | 128 | 4.93e-38 | 125 |
| Msa1404270 | AT5G57060.8 | 67.500 | 80 | 26 | 0 | 45 | 124 | 13 | 92 | 5.63e-38 | 124 |
| Msa1404270 | AT5G57060.2 | 67.500 | 80 | 26 | 0 | 45 | 124 | 13 | 92 | 5.63e-38 | 124 |
| Msa1404270 | AT1G54217.8 | 56.164 | 73 | 31 | 1 | 42 | 113 | 2 | 74 | 1.52e-22 | 85.5 |
| Msa1404270 | AT1G54217.2 | 56.164 | 73 | 31 | 1 | 42 | 113 | 2 | 74 | 1.52e-22 | 85.5 |
| Msa1404270 | AT1G54217.6 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa1404270 | AT1G54217.1 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa1404270 | AT1G54217.4 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa1404270 | AT1G54217.7 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa1404270 | AT1G54217.5 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
| Msa1404270 | AT1G54217.3 | 62.500 | 64 | 23 | 1 | 51 | 113 | 10 | 73 | 2.72e-22 | 84.7 |
Find 55 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATGCAACAATTCTCTATTT+TGG | 0.056794 | tig0023052:-64404 | Msa1404270:CDS |
| CCCCAGGGAACGGGCGGGGC+TGG | 0.245034 | tig0023052:-64363 | Msa1404270:CDS |
| TCCCAGCCCCGCCCGTTCCC+TGG | 0.253175 | tig0023052:+64361 | None:intergenic |
| CCCAGCCCCGCCCGTTCCCT+GGG | 0.307231 | tig0023052:+64362 | None:intergenic |
| CCCAGGGAACGGGCGGGGCT+GGG | 0.312102 | tig0023052:-64362 | Msa1404270:CDS |
| CCATGCTTTGGATGCGGAAT+TGG | 0.323771 | tig0023052:-64559 | Msa1404270:CDS |
| GTCCTCTGGATCTCTAATTA+AGG | 0.363548 | tig0023052:+64612 | None:intergenic |
| GAAGGACCCCAGGGAACGGG+CGG | 0.380252 | tig0023052:-64369 | Msa1404270:CDS |
| GATAAGCCCCTCCCATGCTT+TGG | 0.389734 | tig0023052:-64571 | Msa1404270:CDS |
| AGTGTTATTTGAACAATTCA+AGG | 0.392260 | tig0023052:-67782 | Msa1404270:five_prime_UTR |
| TCGGAAGGACCCCAGGGAAC+GGG | 0.392848 | tig0023052:-64372 | Msa1404270:CDS |
| TCTACAAAATCCATGGATAA+AGG | 0.398211 | tig0023052:-67742 | Msa1404270:intron |
| AGGACCCCAGGGAACGGGCG+GGG | 0.417190 | tig0023052:-64367 | Msa1404270:CDS |
| ATCAAAATTCTTAAAAGAAA+CGG | 0.429179 | tig0023052:+66977 | None:intergenic |
| TTTAAGAAAGGGCGTGGAAT+CGG | 0.452413 | tig0023052:-67006 | Msa1404270:CDS |
| TTTCCCTTTCCGTGAGCCAT+TGG | 0.452477 | tig0023052:+64640 | None:intergenic |
| GATCCAGAGGACTTCCAGTC+AGG | 0.454913 | tig0023052:-64601 | Msa1404270:CDS |
| AGAGAATGTTGATTTAAGAA+AGG | 0.460736 | tig0023052:-67018 | Msa1404270:CDS |
| CATTTCAGTACCTTTATCCA+TGG | 0.469644 | tig0023052:+67732 | None:intergenic |
| ATCATTATCGGAAGGACCCC+AGG | 0.469804 | tig0023052:-64379 | Msa1404270:CDS |
| GATCCAATGGCTCACGGAAA+GGG | 0.471290 | tig0023052:-64643 | Msa1404270:CDS |
| GAGAATGTTGATTTAAGAAA+GGG | 0.481994 | tig0023052:-67017 | Msa1404270:CDS |
| GATTTATTTGCCCTCCTATG+TGG | 0.489666 | tig0023052:-64430 | Msa1404270:CDS |
| TGTTGATTTAAGAAAGGGCG+TGG | 0.497594 | tig0023052:-67012 | Msa1404270:CDS |
| CTTTGTTGTTGCAGATGGTA+GGG | 0.498784 | tig0023052:-67045 | Msa1404270:intron |
| AGTCCTGACTGGAAGTCCTC+TGG | 0.502119 | tig0023052:+64598 | None:intergenic |
| CCTTTGTTGTTGCAGATGGT+AGG | 0.504377 | tig0023052:-67046 | Msa1404270:intron |
| AAGGACCCCAGGGAACGGGC+GGG | 0.511815 | tig0023052:-64368 | Msa1404270:CDS |
| CAAAGTATCTACAAAATCCA+TGG | 0.514321 | tig0023052:-67749 | Msa1404270:exon |
| CCAATTCCGCATCCAAAGCA+TGG | 0.518285 | tig0023052:+64559 | None:intergenic |
| ATCGGAAGGACCCCAGGGAA+CGG | 0.537686 | tig0023052:-64373 | Msa1404270:CDS |
| CTTTATGTGGCAGGACAAGC+AGG | 0.542559 | tig0023052:-64667 | Msa1404270:intron |
| CCCCTCCCATGCTTTGGATG+CGG | 0.543713 | tig0023052:-64565 | Msa1404270:CDS |
| CTTGAATTACTCCGAGCAAA+GGG | 0.545855 | tig0023052:+66945 | None:intergenic |
| TTCCGCATCCAAAGCATGGG+AGG | 0.555498 | tig0023052:+64563 | None:intergenic |
| TCTTGAATTACTCCGAGCAA+AGG | 0.556216 | tig0023052:+66944 | None:intergenic |
| AGATCCAATGGCTCACGGAA+AGG | 0.578977 | tig0023052:-64644 | Msa1404270:CDS |
| GCTTATCATAAAGTCCTGAC+TGG | 0.578995 | tig0023052:+64587 | None:intergenic |
| TCCGCATCCAAAGCATGGGA+GGG | 0.588988 | tig0023052:+64564 | None:intergenic |
| GCTTTGGATGCGGAATTGGA+TGG | 0.591155 | tig0023052:-64555 | Msa1404270:CDS |
| CAATTCCGCATCCAAAGCAT+GGG | 0.593569 | tig0023052:+64560 | None:intergenic |
| GTTGCATAGAACCACATAGG+AGG | 0.594452 | tig0023052:+64419 | None:intergenic |
| CCGCATCCAAAGCATGGGAG+GGG | 0.606480 | tig0023052:+64565 | None:intergenic |
| AGGACAAGCAGGAGATCCAA+TGG | 0.609106 | tig0023052:-64656 | Msa1404270:CDS |
| TGCCTTAATTAGAGATCCAG+AGG | 0.616154 | tig0023052:-64614 | Msa1404270:CDS |
| TTGCATAGAACCACATAGGA+GGG | 0.616476 | tig0023052:+64420 | None:intergenic |
| TGAATTGTTCAAATAACACT+CGG | 0.618519 | tig0023052:+67785 | None:intergenic |
| ATTGTTGCATAGAACCACAT+AGG | 0.645975 | tig0023052:+64416 | None:intergenic |
| TTTGTTGATTCAAGTCAACA+AGG | 0.658733 | tig0023052:-67993 | Msa1404270:intron |
| TCATTATCGGAAGGACCCCA+GGG | 0.659027 | tig0023052:-64378 | Msa1404270:CDS |
| GCAGGAGATCCAATGGCTCA+CGG | 0.665431 | tig0023052:-64649 | Msa1404270:CDS |
| TGTTGTTGCAGATGGTAGGG+TGG | 0.672021 | tig0023052:-67042 | Msa1404270:intron |
| AGAGATTACAGCAATTGCAG+AGG | 0.673672 | tig0023052:+64337 | None:intergenic |
| CCAGCCCCGCCCGTTCCCTG+GGG | 0.674263 | tig0023052:+64363 | None:intergenic |
| TTTGCTCGGAGTAATTCAAG+AGG | 0.694585 | tig0023052:-66942 | Msa1404270:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAAAAATAAAATAAAAT+AGG | + | tig0023052:64319-64338 | None:intergenic | 0.0% |
| !! | ATAATATAATATGTTTCTTA+TGG | - | tig0023052:63800-63819 | Msa1404270:intron | 10.0% |
| !! | AAATAAAATAAAATAGGTAA+TGG | + | tig0023052:64313-64332 | None:intergenic | 10.0% |
| !!! | TGATTTTTTTTTTTTTGAAA+CGG | + | tig0023052:64484-64503 | None:intergenic | 10.0% |
| !! | TAAATCATAAAAATAATTGT+TGG | + | tig0023052:65234-65253 | None:intergenic | 10.0% |
| !!! | TAATTTTCGTTTTTATTTTT+GGG | + | tig0023052:66076-66095 | None:intergenic | 10.0% |
| !!! | TTTTGTAAGAAAAATAAAAT+TGG | + | tig0023052:66439-66458 | None:intergenic | 10.0% |
| !! | GAAACTTTAAATTAAATTAA+AGG | - | tig0023052:67722-67741 | Msa1404270:intron | 10.0% |
| !!! | AATTGCTTAATTAAGATTTT+TGG | - | tig0023052:63146-63165 | Msa1404270:intron | 15.0% |
| !!! | ATTGCTTAATTAAGATTTTT+GGG | - | tig0023052:63147-63166 | Msa1404270:intron | 15.0% |
| !! | ATCAAAATTCTTAAAAGAAA+CGG | + | tig0023052:64211-64230 | None:intergenic | 15.0% |
| !!! | TTAAGAATTTTGATCTTTTA+AGG | - | tig0023052:64217-64236 | Msa1404270:intron | 15.0% |
| !! | TAATCTGTATAATAAATACT+AGG | + | tig0023052:64510-64529 | None:intergenic | 15.0% |
| !! | ATATATTCTACTATAAATAG+AGG | - | tig0023052:65172-65191 | Msa1404270:intron | 15.0% |
| !!! | CAAAACTATTTTATCAAATT+TGG | - | tig0023052:65261-65280 | Msa1404270:intron | 15.0% |
| !!! | GTAATTTTCGTTTTTATTTT+TGG | + | tig0023052:66077-66096 | None:intergenic | 15.0% |
| !! | CATATTAAAATGATGAAAAT+TGG | - | tig0023052:66096-66115 | Msa1404270:intron | 15.0% |
| !!! | ATATAATTTGTCTTTTTGAA+TGG | - | tig0023052:67589-67608 | Msa1404270:intron | 15.0% |
| !! | ACATTTGAATTAAAAATAGA+GGG | + | tig0023052:67913-67932 | None:intergenic | 15.0% |
| !!! | TATTTTTAATTCAAATGTGA+AGG | - | tig0023052:67915-67934 | Msa1404270:intron | 15.0% |
| !! | GAAAAATTTATCAAATAAGA+AGG | + | tig0023052:68124-68143 | None:intergenic | 15.0% |
| !!! | TATTTTTTTAATATAGCAAC+TGG | - | tig0023052:68189-68208 | Msa1404270:five_prime_UTR | 15.0% |
| !! | ATTTGTAATTTATTACATGG+AGG | + | tig0023052:63843-63862 | None:intergenic | 20.0% |
| !! | TCCATGTAATAAATTACAAA+TGG | - | tig0023052:63842-63861 | Msa1404270:intron | 20.0% |
| !! | TCCATTTGTAATTTATTACA+TGG | + | tig0023052:63846-63865 | None:intergenic | 20.0% |
| !! | TGTAATAAATTACAAATGGA+AGG | - | tig0023052:63846-63865 | Msa1404270:intron | 20.0% |
| !! | TAGTTTATCATTATTTGGAT+TGG | - | tig0023052:64052-64071 | Msa1404270:intron | 20.0% |
| !! | ACTTAAGTAGAAAAATCATA+TGG | + | tig0023052:64288-64307 | None:intergenic | 20.0% |
| !! | TTTAATACTAGGATTTGATT+AGG | + | tig0023052:64456-64475 | None:intergenic | 20.0% |
| !! | TCAATTTGCAATTATATCAT+TGG | - | tig0023052:64565-64584 | Msa1404270:CDS | 20.0% |
| !! | TAATAGTGAATATTAGGATT+TGG | + | tig0023052:65093-65112 | None:intergenic | 20.0% |
| !! | AAATCCTAATATTCACTATT+AGG | - | tig0023052:65092-65111 | Msa1404270:intron | 20.0% |
| !! | TAATCCTAATAGTGAATATT+AGG | + | tig0023052:65099-65118 | None:intergenic | 20.0% |
| !! | TAGGATTAGAATTATAGATT+AGG | - | tig0023052:65111-65130 | Msa1404270:intron | 20.0% |
| !! | TAGAATTATAGATTAGGATT+TGG | - | tig0023052:65117-65136 | Msa1404270:intron | 20.0% |
| !! | ATGTTTATTACCTAGAAAAT+AGG | - | tig0023052:65946-65965 | Msa1404270:intron | 20.0% |
| !!! | TTGTCATGTGAATTTTTTAT+AGG | - | tig0023052:66133-66152 | Msa1404270:intron | 20.0% |
| !! | ATTCATCTATATCGATATAA+TGG | + | tig0023052:66248-66267 | None:intergenic | 20.0% |
| !! | AGTAATATGCTAATGATTTA+TGG | - | tig0023052:66350-66369 | Msa1404270:intron | 20.0% |
| !!! | TTAAATTGCAGATTTCTTTT+TGG | - | tig0023052:66733-66752 | Msa1404270:intron | 20.0% |
| !! | TAGTTAAGTTCAAATAAACA+AGG | - | tig0023052:67032-67051 | Msa1404270:CDS | 20.0% |
| !!! | ATCTCATGTTACTATATTTT+TGG | - | tig0023052:67231-67250 | Msa1404270:intron | 20.0% |
| !! | TTTGATACAAATTTGTGTAT+AGG | - | tig0023052:67389-67408 | Msa1404270:intron | 20.0% |
| !! | AGATATCATGTTAATTTAGA+TGG | - | tig0023052:67508-67527 | Msa1404270:intron | 20.0% |
| !!! | AATGGTCAAAATAAGAATTT+TGG | - | tig0023052:67607-67626 | Msa1404270:intron | 20.0% |
| !! | CACATTTGAATTAAAAATAG+AGG | + | tig0023052:67914-67933 | None:intergenic | 20.0% |
| !! | TATACCTACTATAAATTTGA+TGG | - | tig0023052:68154-68173 | Msa1404270:five_prime_UTR | 20.0% |
| !! | ATGATTTGATTGATTTCTGA+AGG | - | tig0023052:63236-63255 | Msa1404270:intron | 25.0% |
| !!! | TTGATTCACTTTTGAAAAAC+AGG | - | tig0023052:63373-63392 | Msa1404270:intron | 25.0% |
| ! | TGAATTGTTCAAATAACACT+CGG | + | tig0023052:63403-63422 | None:intergenic | 25.0% |
| !!! | AGTGTTATTTGAACAATTCA+AGG | - | tig0023052:63403-63422 | Msa1404270:intron | 25.0% |
| ! | AACATCTATGCAAATTAATC+AGG | + | tig0023052:63494-63513 | None:intergenic | 25.0% |
| !!! | AAAATATGTTTTGTTAGCAC+TGG | - | tig0023052:63604-63623 | Msa1404270:intron | 25.0% |
| !!! | CTACTAGGTTTTAACTTTTA+AGG | - | tig0023052:63687-63706 | Msa1404270:intron | 25.0% |
| ! | TATATTATGAAACTCTCACA+TGG | + | tig0023052:63788-63807 | None:intergenic | 25.0% |
| ! | AATAAATTACAAATGGAAGG+AGG | - | tig0023052:63849-63868 | Msa1404270:intron | 25.0% |
| !! | TGGTCTAGTTTATCATTATT+TGG | - | tig0023052:64047-64066 | Msa1404270:intron | 25.0% |
| ! | TTCCATTTGAAAATGCTTAA+TGG | + | tig0023052:64116-64135 | None:intergenic | 25.0% |
| !!! | AGAGAATGTTGATTTAAGAA+AGG | - | tig0023052:64167-64186 | Msa1404270:intron | 25.0% |
| !!! | GAGAATGTTGATTTAAGAAA+GGG | - | tig0023052:64168-64187 | Msa1404270:intron | 25.0% |
| ! | AAACGGCAAAATTTAATACT+AGG | + | tig0023052:64467-64486 | None:intergenic | 25.0% |
| ! | ACAGATTAGAATCATAGATT+AGG | - | tig0023052:64522-64541 | Msa1404270:intron | 25.0% |
| ! | GAGAGAAAATTCATCAAAAA+AGG | + | tig0023052:64668-64687 | None:intergenic | 25.0% |
| !! | TCTTATTATCTCTTTTCATC+CGG | - | tig0023052:64729-64748 | Msa1404270:intron | 25.0% |
| ! | TAGAGAAAATACAAACAACA+AGG | + | tig0023052:64995-65014 | None:intergenic | 25.0% |
| !!! | TTAAGTTTGTTACAATGTGT+TGG | + | tig0023052:65025-65044 | None:intergenic | 25.0% |
| !!! | ACTTAGTAAGCTTTATTTTG+AGG | - | tig0023052:65046-65065 | Msa1404270:intron | 25.0% |
| !!! | CTTAGTAAGCTTTATTTTGA+GGG | - | tig0023052:65047-65066 | Msa1404270:intron | 25.0% |
| !!! | TTAGTAAGCTTTATTTTGAG+GGG | - | tig0023052:65048-65067 | Msa1404270:intron | 25.0% |
| ! | TATAGATTAGGATTTGGATT+AGG | - | tig0023052:65123-65142 | Msa1404270:intron | 25.0% |
| ! | TTTATCAAATTTGGCTAAAC+TGG | - | tig0023052:65270-65289 | Msa1404270:intron | 25.0% |
| ! | TGGTTTATGATAGAACATTA+TGG | + | tig0023052:65486-65505 | None:intergenic | 25.0% |
| ! | GTTCTATCATAAACCATATT+TGG | - | tig0023052:65490-65509 | Msa1404270:intron | 25.0% |
| ! | AACTATTAGGAAAGATTTAG+AGG | + | tig0023052:65530-65549 | None:intergenic | 25.0% |
| ! | AGACTATAAGAGAAACTATT+AGG | + | tig0023052:65543-65562 | None:intergenic | 25.0% |
| ! | TTATGATGCAACAATTACAA+AGG | + | tig0023052:65596-65615 | None:intergenic | 25.0% |
| ! | CTTTCATCAATTATACAAAG+AGG | + | tig0023052:65629-65648 | None:intergenic | 25.0% |
| !!! | TCACTTTTGTTTGATAACTT+TGG | + | tig0023052:65728-65747 | None:intergenic | 25.0% |
| ! | ATTACTAGTATTTCAATCCT+AGG | + | tig0023052:65883-65902 | None:intergenic | 25.0% |
| ! | CATTGTATTTGATAAATGCA+TGG | + | tig0023052:65918-65937 | None:intergenic | 25.0% |
| !!! | TTTTCGTTTTTATTTTTGGG+TGG | + | tig0023052:66073-66092 | None:intergenic | 25.0% |
| !! | GATGAAAATTGGACTTTTAA+TGG | - | tig0023052:66107-66126 | Msa1404270:intron | 25.0% |
| !! | TATATCGATATAATGGAAGT+CGG | + | tig0023052:66241-66260 | None:intergenic | 25.0% |
| ! | AGAATAGACTCATTAAATAC+TGG | - | tig0023052:66404-66423 | Msa1404270:intron | 25.0% |
| !! | TATGCAACAATTCTCTATTT+TGG | - | tig0023052:66781-66800 | Msa1404270:intron | 25.0% |
| !! | ATGCAACAATTCTCTATTTT+GGG | - | tig0023052:66782-66801 | Msa1404270:intron | 25.0% |
| !!! | TCTATTTTGGGAATCATTAT+CGG | - | tig0023052:66794-66813 | Msa1404270:intron | 25.0% |
| ! | TAACTTGATACGAAAAAGAA+AGG | + | tig0023052:67312-67331 | None:intergenic | 25.0% |
| ! | ACACAAATTTGTATCAAAAG+TGG | + | tig0023052:67387-67406 | None:intergenic | 25.0% |
| ! | TTTAAAAACGTCAACAATGT+TGG | + | tig0023052:67650-67669 | None:intergenic | 25.0% |
| !!! | AGGAAGATTTTTTTAACAGA+AGG | + | tig0023052:67890-67909 | None:intergenic | 25.0% |
| ! | TTTGAATTAAAAATAGAGGG+AGG | + | tig0023052:67910-67929 | None:intergenic | 25.0% |
| !!! | TTTTAATTCAAATGTGAAGG+TGG | - | tig0023052:67918-67937 | Msa1404270:intron | 25.0% |
| ! | GTATATAACAGCTTCAATAT+AGG | - | tig0023052:68006-68025 | Msa1404270:five_prime_UTR | 25.0% |
| !! | TTTGTTGATTCAAGTCAACA+AGG | - | tig0023052:63192-63211 | Msa1404270:intron | 30.0% |
| TGAGATCAGATATATGCATT+TGG | + | tig0023052:63267-63286 | None:intergenic | 30.0% | |
| ! | CAAAGTATCTACAAAATCCA+TGG | - | tig0023052:63436-63455 | Msa1404270:intron | 30.0% |
| TCTACAAAATCCATGGATAA+AGG | - | tig0023052:63443-63462 | Msa1404270:intron | 30.0% | |
| TGATGTGAATTCAGAAATTG+TGG | - | tig0023052:63909-63928 | Msa1404270:intron | 30.0% | |
| TTGAAAATGCTTAATGGAGA+TGG | + | tig0023052:64110-64129 | None:intergenic | 30.0% | |
| ! | CTCCATTAAGCATTTTCAAA+TGG | - | tig0023052:64111-64130 | Msa1404270:intron | 30.0% |
| GTAATTCAAGAGGTAACAAT+AGG | - | tig0023052:64253-64272 | Msa1404270:intron | 30.0% | |
| !!! | GTCAGTTCTTATTTTGTTAG+TGG | - | tig0023052:64353-64372 | Msa1404270:CDS | 30.0% |
| !!! | AGTTCTTATTTTGTTAGTGG+AGG | - | tig0023052:64356-64375 | Msa1404270:CDS | 30.0% |
| GGATTTGATTAGGATTGATA+AGG | + | tig0023052:64446-64465 | None:intergenic | 30.0% | |
| GGATGAAAAGAGATAATAAG+AGG | + | tig0023052:64730-64749 | None:intergenic | 30.0% | |
| TCACTATAGCAAAGACAATT+GGG | + | tig0023052:64935-64954 | None:intergenic | 30.0% | |
| !!! | TAGTAAGCTTTATTTTGAGG+GGG | - | tig0023052:65049-65068 | Msa1404270:intron | 30.0% |
| ! | TAATGAGTTGGATCCAAATA+TGG | + | tig0023052:65506-65525 | None:intergenic | 30.0% |
| AGATTTAGAGGTTAATGAGT+TGG | + | tig0023052:65518-65537 | None:intergenic | 30.0% | |
| !! | TTTGATAACTTTGGTTCTAC+TGG | + | tig0023052:65719-65738 | None:intergenic | 30.0% |
| ! | GAGATTCTTATTTATAGCCT+AGG | - | tig0023052:65863-65882 | Msa1404270:intron | 30.0% |
| TTTGATAAATGCATGGTAGT+GGG | + | tig0023052:65911-65930 | None:intergenic | 30.0% | |
| ATTTGATAAATGCATGGTAG+TGG | + | tig0023052:65912-65931 | None:intergenic | 30.0% | |
| AAGTCATTATAGTTGCTAGT+GGG | + | tig0023052:65991-66010 | None:intergenic | 30.0% | |
| TAAGTCATTATAGTTGCTAG+TGG | + | tig0023052:65992-66011 | None:intergenic | 30.0% | |
| ATCAAAGTCAAAAGACAAAG+GGG | + | tig0023052:66277-66296 | None:intergenic | 30.0% | |
| GATCAAAGTCAAAAGACAAA+GGG | + | tig0023052:66278-66297 | None:intergenic | 30.0% | |
| AGATCAAAGTCAAAAGACAA+AGG | + | tig0023052:66279-66298 | None:intergenic | 30.0% | |
| !!! | TGTCTTTTGACTTTGATCTT+AGG | - | tig0023052:66280-66299 | Msa1404270:intron | 30.0% |
| !!! | GTCTTTTGACTTTGATCTTA+GGG | - | tig0023052:66281-66300 | Msa1404270:intron | 30.0% |
| AGTGCAAGTAGTTATTTGAA+GGG | + | tig0023052:66500-66519 | None:intergenic | 30.0% | |
| AAGTGCAAGTAGTTATTTGA+AGG | + | tig0023052:66501-66520 | None:intergenic | 30.0% | |
| ATAACTACTTGCACTTTATG+TGG | - | tig0023052:66505-66524 | Msa1404270:intron | 30.0% | |
| TACACACAAATAGACAAGAA+GGG | + | tig0023052:66892-66911 | None:intergenic | 30.0% | |
| ATACACACAAATAGACAAGA+AGG | + | tig0023052:66893-66912 | None:intergenic | 30.0% | |
| GTTAAACTGCTAAATAGAGT+TGG | - | tig0023052:66968-66987 | Msa1404270:CDS | 30.0% | |
| TCAAATAAACAAGGAAGCTT+TGG | - | tig0023052:67041-67060 | Msa1404270:intron | 30.0% | |
| GTATTTGATCCATGAAAACA+TGG | + | tig0023052:67084-67103 | None:intergenic | 30.0% | |
| TTATGCCAGCTTAAATGATA+TGG | + | tig0023052:67142-67161 | None:intergenic | 30.0% | |
| !! | AGTGGACTAAGAATAAAAAC+TGG | + | tig0023052:67369-67388 | None:intergenic | 30.0% |
| AGATATTGCAACAGTCATTA+TGG | - | tig0023052:67534-67553 | Msa1404270:intron | 30.0% | |
| TAGCGATGTCTAAATTGTTA+TGG | - | tig0023052:67809-67828 | Msa1404270:intron | 30.0% | |
| CACACCATCAAATTTATAGT+AGG | + | tig0023052:68161-68180 | None:intergenic | 30.0% | |
| !!! | CGTTTCTTCGTTACTTTTTC+TGG | - | tig0023052:63032-63051 | Msa1404270:intron | 35.0% |
| TAGAAGCAGCAGATAAATAC+AGG | + | tig0023052:63317-63336 | None:intergenic | 35.0% | |
| CATTTCAGTACCTTTATCCA+TGG | + | tig0023052:63456-63475 | None:intergenic | 35.0% | |
| TTACCTATGCATCGAAATCA+CGG | + | tig0023052:63585-63604 | None:intergenic | 35.0% | |
| GTTTGTATGATTGAGCTACT+AGG | - | tig0023052:63672-63691 | Msa1404270:intron | 35.0% | |
| TTAAATGCTAACAACAGCTC+AGG | + | tig0023052:63741-63760 | None:intergenic | 35.0% | |
| AAATTACAAATGGAAGGAGG+AGG | - | tig0023052:63852-63871 | Msa1404270:intron | 35.0% | |
| !! | ATTTCCTTTGTTGTTGCAGA+TGG | - | tig0023052:64135-64154 | Msa1404270:intron | 35.0% |
| !!! | CTTATTTTGTTAGTGGAGGA+AGG | - | tig0023052:64360-64379 | Msa1404270:CDS | 35.0% |
| ! | TAGAGTGATAAAGCGTTCAA+AGG | + | tig0023052:64390-64409 | None:intergenic | 35.0% |
| ! | AATTTTCTCTCTCCTCTACA+AGG | - | tig0023052:64677-64696 | Msa1404270:intron | 35.0% |
| ! | CTGGTTGAATCAAATTTTCC+CGG | + | tig0023052:64847-64866 | None:intergenic | 35.0% |
| GTCACTATAGCAAAGACAAT+TGG | + | tig0023052:64936-64955 | None:intergenic | 35.0% | |
| !! | ACTTATAGTCTTGGTTCTAC+CGG | + | tig0023052:65769-65788 | None:intergenic | 35.0% |
| GGGTTAAGAACTTATAGTCT+TGG | + | tig0023052:65778-65797 | None:intergenic | 35.0% | |
| AGTTCTTAACCCAAGAACAA+AGG | - | tig0023052:65786-65805 | Msa1404270:intron | 35.0% | |
| ! | AGAGCTTTTCCTTTGTTCTT+GGG | + | tig0023052:65798-65817 | None:intergenic | 35.0% |
| ! | CATGTTAGTGCCTATTTTCT+AGG | + | tig0023052:65959-65978 | None:intergenic | 35.0% |
| !! | CTACTTTGAAGCATTTAGAG+AGG | - | tig0023052:66017-66036 | Msa1404270:intron | 35.0% |
| TCAAAGTCAAAAGACAAAGG+GGG | + | tig0023052:66276-66295 | None:intergenic | 35.0% | |
| CTGCACATTATCTCTAAACT+AGG | + | tig0023052:66386-66405 | None:intergenic | 35.0% | |
| ATTGTTGCATAGAACCACAT+AGG | + | tig0023052:66772-66791 | None:intergenic | 35.0% | |
| !! | TTTTGGGAATCATTATCGGA+AGG | - | tig0023052:66798-66817 | Msa1404270:intron | 35.0% |
| CTGAGCTAATAGTATTTACC+TGG | + | tig0023052:67005-67024 | None:intergenic | 35.0% | |
| ! | TGAAAACATGGTTTGTCAAC+TGG | + | tig0023052:67072-67091 | None:intergenic | 35.0% |
| ! | GTTGACAAACCATGTTTTCA+TGG | - | tig0023052:67072-67091 | Msa1404270:intron | 35.0% |
| ACAAGCCATATCATTTAAGC+TGG | - | tig0023052:67134-67153 | Msa1404270:intron | 35.0% | |
| TCACAACTTATAGCAACTCA+AGG | + | tig0023052:67168-67187 | None:intergenic | 35.0% | |
| ! | TTGAGTTGCTATAAGTTGTG+AGG | - | tig0023052:67167-67186 | Msa1404270:intron | 35.0% |
| GTAACATGAGATATCTGCAA+TGG | + | tig0023052:67223-67242 | None:intergenic | 35.0% | |
| !!! | ATTTTTGGCGAAACTACGTT+AGG | - | tig0023052:67246-67265 | Msa1404270:intron | 35.0% |
| TGTTATGGTGATAAACTTGC+AGG | - | tig0023052:67824-67843 | Msa1404270:intron | 35.0% | |
| ACATTTGAAAGCGATTCTGA+CGG | - | tig0023052:67957-67976 | Msa1404270:intron | 35.0% | |
| !!! | AAGTTGCGTTTTGTTTGTGA+AGG | - | tig0023052:68038-68057 | Msa1404270:five_prime_UTR | 35.0% |
| GCAGCAGATAAATACAGGAA+AGG | + | tig0023052:63312-63331 | None:intergenic | 40.0% | |
| TGGAGGAATAATCATCAGTC+TGG | + | tig0023052:63826-63845 | None:intergenic | 40.0% | |
| AGTAATACGTATCACCAGAG+TGG | - | tig0023052:63999-64018 | Msa1404270:intron | 40.0% | |
| AGACCATAGACTTGAAAGCT+TGG | + | tig0023052:64033-64052 | None:intergenic | 40.0% | |
| !! | CTTTGTTGTTGCAGATGGTA+GGG | - | tig0023052:64140-64159 | Msa1404270:intron | 40.0% |
| !! | TGTTGATTTAAGAAAGGGCG+TGG | - | tig0023052:64173-64192 | Msa1404270:intron | 40.0% |
| ! | TTTAAGAAAGGGCGTGGAAT+CGG | - | tig0023052:64179-64198 | Msa1404270:intron | 40.0% |
| !!! | ATCTTTTAAGGCCCTTTGCT+CGG | - | tig0023052:64229-64248 | Msa1404270:intron | 40.0% |
| CTTGAATTACTCCGAGCAAA+GGG | + | tig0023052:64243-64262 | None:intergenic | 40.0% | |
| TCTTGAATTACTCCGAGCAA+AGG | + | tig0023052:64244-64263 | None:intergenic | 40.0% | |
| TTTGCTCGGAGTAATTCAAG+AGG | - | tig0023052:64243-64262 | Msa1404270:intron | 40.0% | |
| !! | ATAAGGCGACTTGGTGATTT+GGG | + | tig0023052:64429-64448 | None:intergenic | 40.0% |
| TTAGGATTGATAAGGCGACT+TGG | + | tig0023052:64438-64457 | None:intergenic | 40.0% | |
| TACAAGGATCTGCTATGGTT+TGG | - | tig0023052:64693-64712 | Msa1404270:intron | 40.0% | |
| AGTAGGACAAAAACGTTGAC+CGG | + | tig0023052:64751-64770 | None:intergenic | 40.0% | |
| ! | TTTTCGAAAATGGGTCTCAC+TGG | + | tig0023052:64881-64900 | None:intergenic | 40.0% |
| ! | GACTGGTGGTTTTCGAAAAT+GGG | + | tig0023052:64890-64909 | None:intergenic | 40.0% |
| ! | TGACTGGTGGTTTTCGAAAA+TGG | + | tig0023052:64891-64910 | None:intergenic | 40.0% |
| ATGATTTCAAAGGTGACTGG+TGG | + | tig0023052:64904-64923 | None:intergenic | 40.0% | |
| TGGATGATTTCAAAGGTGAC+TGG | + | tig0023052:64907-64926 | None:intergenic | 40.0% | |
| TCCAGTTGTGCTACCATTTA+CGG | - | tig0023052:64957-64976 | Msa1404270:intron | 40.0% | |
| AACAACCAAGCCTTACTAAG+TGG | - | tig0023052:65435-65454 | Msa1404270:intron | 40.0% | |
| ACAACCAAGCCTTACTAAGT+GGG | - | tig0023052:65436-65455 | Msa1404270:intron | 40.0% | |
| GAAATTGATACGTGACCGAT+AGG | - | tig0023052:65648-65667 | Msa1404270:intron | 40.0% | |
| !! | TGTTTTCAAGACGGTCCTAT+CGG | + | tig0023052:65666-65685 | None:intergenic | 40.0% |
| !! | TTCCTTGCCTGTTTTCAAGA+CGG | + | tig0023052:65675-65694 | None:intergenic | 40.0% |
| !! | ATAACTTTGGTTCTACTGGC+AGG | + | tig0023052:65715-65734 | None:intergenic | 40.0% |
| ! | GAGAGCTTTTCCTTTGTTCT+TGG | + | tig0023052:65799-65818 | None:intergenic | 40.0% |
| ! | TTGAAGCATTTAGAGAGGCT+AGG | - | tig0023052:66022-66041 | Msa1404270:intron | 40.0% |
| TCAAGAGTTCACTAAGCATG+TGG | + | tig0023052:66166-66185 | None:intergenic | 40.0% | |
| TGCCTTAATTAGAGATCCAG+AGG | - | tig0023052:66571-66590 | Msa1404270:intron | 40.0% | |
| GTCCTCTGGATCTCTAATTA+AGG | + | tig0023052:66576-66595 | None:intergenic | 40.0% | |
| GCTTATCATAAAGTCCTGAC+TGG | + | tig0023052:66601-66620 | None:intergenic | 40.0% | |
| GATTTATTTGCCCTCCTATG+TGG | - | tig0023052:66755-66774 | Msa1404270:intron | 40.0% | |
| TTGCATAGAACCACATAGGA+GGG | + | tig0023052:66768-66787 | None:intergenic | 40.0% | |
| AGAGATTACAGCAATTGCAG+AGG | + | tig0023052:66851-66870 | None:intergenic | 40.0% | |
| CATTTGTGAATGCATGCATG+AGG | + | tig0023052:66926-66945 | None:intergenic | 40.0% | |
| GATATCTGCAATGGCAGAAA+AGG | + | tig0023052:67214-67233 | None:intergenic | 40.0% | |
| ATCTGATTGTGACCTCATTG+TGG | + | tig0023052:67478-67497 | None:intergenic | 40.0% | |
| ATGTCTGCTACACTGAAAGT+TGG | - | tig0023052:68077-68096 | Msa1404270:five_prime_UTR | 40.0% | |
| TGTCTGCTACACTGAAAGTT+GGG | - | tig0023052:68078-68097 | Msa1404270:five_prime_UTR | 40.0% | |
| AGTTGGGAGAAAATGATACG+TGG | - | tig0023052:68094-68113 | Msa1404270:five_prime_UTR | 40.0% | |
| TATGCATCGAAATCACGGCA+AGG | + | tig0023052:63580-63599 | None:intergenic | 45.0% | |
| TTGCCGTGATTTCGATGCAT+AGG | - | tig0023052:63579-63598 | Msa1404270:intron | 45.0% | |
| !! | TTAGCACTGGTGTGATAAGC+AGG | - | tig0023052:63617-63636 | Msa1404270:intron | 45.0% |
| !! | TAGCACTGGTGTGATAAGCA+GGG | - | tig0023052:63618-63637 | Msa1404270:intron | 45.0% |
| ! | AGGAGGTGTGTTCATTCATC+AGG | - | tig0023052:63869-63888 | Msa1404270:intron | 45.0% |
| ! | GCTCCAAGCTTTCAAGTCTA+TGG | - | tig0023052:64027-64046 | Msa1404270:intron | 45.0% |
| TGGTTGACTGAGCAAAAGTG+TGG | - | tig0023052:64072-64091 | Msa1404270:intron | 45.0% | |
| CCTACCATCTGCAACAACAA+AGG | + | tig0023052:64142-64161 | None:intergenic | 45.0% | |
| !! | CCTTTGTTGTTGCAGATGGT+AGG | - | tig0023052:64139-64158 | Msa1404270:intron | 45.0% |
| !! | GATAAGGCGACTTGGTGATT+TGG | + | tig0023052:64430-64449 | None:intergenic | 45.0% |
| GCCTAAGTGGAAGTTATGCT+CGG | + | tig0023052:64603-64622 | None:intergenic | 45.0% | |
| AAATCATCCAGTAGCTGCAG+TGG | + | tig0023052:64637-64656 | None:intergenic | 45.0% | |
| TCCTCTACAAGGATCTGCTA+TGG | - | tig0023052:64688-64707 | Msa1404270:intron | 45.0% | |
| ACCATAGCAGATCCTTGTAG+AGG | + | tig0023052:64692-64711 | None:intergenic | 45.0% | |
| GCACAATGAATGTGCACAGT+AGG | + | tig0023052:64779-64798 | None:intergenic | 45.0% | |
| ACTGACGTGAAAGAGAAGCA+AGG | + | tig0023052:64808-64827 | None:intergenic | 45.0% | |
| TTGCTTCTCTTTCACGTCAG+TGG | - | tig0023052:64807-64826 | Msa1404270:intron | 45.0% | |
| TGCTTCTCTTTCACGTCAGT+GGG | - | tig0023052:64808-64827 | Msa1404270:intron | 45.0% | |
| ! | AGTGGGTTTCTCTTTGCATC+CGG | - | tig0023052:64825-64844 | Msa1404270:intron | 45.0% |
| GGCTCACTGGATGATTTCAA+AGG | + | tig0023052:64914-64933 | None:intergenic | 45.0% | |
| GTAAATGGTAGCACAACTGG+AGG | + | tig0023052:64958-64977 | None:intergenic | 45.0% | |
| GAGGTGAGTGTAGTCTGATT+TGG | - | tig0023052:65191-65210 | Msa1404270:intron | 45.0% | |
| TCCACACATGTACTTGTGAG+AGG | - | tig0023052:65320-65339 | Msa1404270:intron | 45.0% | |
| CCACACATGTACTTGTGAGA+GGG | - | tig0023052:65321-65340 | Msa1404270:intron | 45.0% | |
| CACACATGTACTTGTGAGAG+GGG | - | tig0023052:65322-65341 | Msa1404270:intron | 45.0% | |
| CAACCAAGCCTTACTAAGTG+GGG | - | tig0023052:65437-65456 | Msa1404270:intron | 45.0% | |
| TTGAGCACGTAACACACTCA+AGG | + | tig0023052:65569-65588 | None:intergenic | 45.0% | |
| GATAGGACCGTCTTGAAAAC+AGG | - | tig0023052:65665-65684 | Msa1404270:intron | 45.0% | |
| GAGTTCACTAAGCATGTGGA+AGG | + | tig0023052:66162-66181 | None:intergenic | 45.0% | |
| GTTCTGCACGTCATTTACAG+CGG | - | tig0023052:66206-66225 | Msa1404270:intron | 45.0% | |
| GTCAAAAGACAAAGGGGGAA+TGG | + | tig0023052:66271-66290 | None:intergenic | 45.0% | |
| CTACTTGCACTTTATGTGGC+AGG | - | tig0023052:66509-66528 | Msa1404270:intron | 45.0% | |
| CAATTCCGCATCCAAAGCAT+GGG | + | tig0023052:66628-66647 | None:intergenic | 45.0% | |
| CAATCATAGCAGCGAGCAAA+TGG | + | tig0023052:66688-66707 | None:intergenic | 45.0% | |
| GTTGCATAGAACCACATAGG+AGG | + | tig0023052:66769-66788 | None:intergenic | 45.0% | |
| AAGAAGGGAGCAGAGAGAAA+GGG | + | tig0023052:66877-66896 | None:intergenic | 45.0% | |
| !! | GAGTTGGTTTGAACATAGCC+AGG | - | tig0023052:66984-67003 | Msa1404270:CDS | 45.0% |
| TGGCAGAAAAGGAACTTGGT+TGG | + | tig0023052:67203-67222 | None:intergenic | 45.0% | |
| GCAATGGCAGAAAAGGAACT+TGG | + | tig0023052:67207-67226 | None:intergenic | 45.0% | |
| !! | GTCTAATTGGTGGTGATGAG+TGG | + | tig0023052:67445-67464 | None:intergenic | 45.0% |
| TCATCAAGGGGTCTAATTGG+TGG | + | tig0023052:67455-67474 | None:intergenic | 45.0% | |
| TGGTCATCAAGGGGTCTAAT+TGG | + | tig0023052:67458-67477 | None:intergenic | 45.0% | |
| ACCTCATTGTGGTCATCAAG+GGG | + | tig0023052:67467-67486 | None:intergenic | 45.0% | |
| GACCTCATTGTGGTCATCAA+GGG | + | tig0023052:67468-67487 | None:intergenic | 45.0% | |
| TGACCTCATTGTGGTCATCA+AGG | + | tig0023052:67469-67488 | None:intergenic | 45.0% | |
| !! | AGCACTGGTGTGATAAGCAG+GGG | - | tig0023052:63619-63638 | Msa1404270:intron | 50.0% |
| ACGTATCACCAGAGTGGTCT+TGG | - | tig0023052:64005-64024 | Msa1404270:intron | 50.0% | |
| TGTTGTTGCAGATGGTAGGG+TGG | - | tig0023052:64143-64162 | Msa1404270:intron | 50.0% | |
| GCCGAGCATAACTTCCACTT+AGG | - | tig0023052:64599-64618 | Msa1404270:CDS | 50.0% | |
| GTGCACAGTAGGACAGAAGT+AGG | + | tig0023052:64768-64787 | None:intergenic | 50.0% | |
| GTGGGTTTCTCTTTGCATCC+GGG | - | tig0023052:64826-64845 | Msa1404270:intron | 50.0% | |
| GCAAAGACAATTGGGCTCAC+TGG | + | tig0023052:64927-64946 | None:intergenic | 50.0% | |
| GCCGTAAATGGTAGCACAAC+TGG | + | tig0023052:64961-64980 | None:intergenic | 50.0% | |
| GTCGTAGCTTCAGCCGTAAA+TGG | + | tig0023052:64973-64992 | None:intergenic | 50.0% | |
| CCCTCTCACAAGTACATGTG+TGG | + | tig0023052:65324-65343 | None:intergenic | 50.0% | |
| CAAGCCTTACTAAGTGGGGT+CGG | - | tig0023052:65441-65460 | Msa1404270:intron | 50.0% | |
| GACCGTCTTGAAAACAGGCA+AGG | - | tig0023052:65670-65689 | Msa1404270:intron | 50.0% | |
| !! | ATAGTCTTGGTTCTACCGGC+AGG | + | tig0023052:65765-65784 | None:intergenic | 50.0% |
| CTTTATGTGGCAGGACAAGC+AGG | - | tig0023052:66518-66537 | Msa1404270:intron | 50.0% | |
| AGGACAAGCAGGAGATCCAA+TGG | - | tig0023052:66529-66548 | Msa1404270:intron | 50.0% | |
| AGATCCAATGGCTCACGGAA+AGG | - | tig0023052:66541-66560 | Msa1404270:intron | 50.0% | |
| GATCCAATGGCTCACGGAAA+GGG | - | tig0023052:66542-66561 | Msa1404270:intron | 50.0% | |
| TTTCCCTTTCCGTGAGCCAT+TGG | + | tig0023052:66548-66567 | None:intergenic | 50.0% | |
| CCAATTCCGCATCCAAAGCA+TGG | + | tig0023052:66629-66648 | None:intergenic | 50.0% | |
| ! | CCATGCTTTGGATGCGGAAT+TGG | - | tig0023052:66626-66645 | Msa1404270:intron | 50.0% |
| ! | GCTTTGGATGCGGAATTGGA+TGG | - | tig0023052:66630-66649 | Msa1404270:intron | 50.0% |
| TAGCAGCGAGCAAATGGAGA+AGG | + | tig0023052:66682-66701 | None:intergenic | 50.0% | |
| ATCATTATCGGAAGGACCCC+AGG | - | tig0023052:66806-66825 | Msa1404270:intron | 50.0% | |
| TCATTATCGGAAGGACCCCA+GGG | - | tig0023052:66807-66826 | Msa1404270:intron | 50.0% | |
| CAAGAAGGGAGCAGAGAGAA+AGG | + | tig0023052:66878-66897 | None:intergenic | 50.0% | |
| ! | ACCCCTTGATGACCACAATG+AGG | - | tig0023052:67463-67482 | Msa1404270:intron | 50.0% |
| CTTGCAGGCATTAGTGTGCT+CGG | - | tig0023052:67839-67858 | Msa1404270:intron | 50.0% | |
| AGGCATTAGTGTGCTCGGTA+GGG | - | tig0023052:67844-67863 | Msa1404270:intron | 50.0% | |
| ! | GTAGCAGACATTTTCAGCGC+TGG | + | tig0023052:68068-68087 | None:intergenic | 50.0% |
| ! | GCAAAAGTGTGGAGTTCGCG+AGG | - | tig0023052:64083-64102 | Msa1404270:intron | 55.0% |
| !! | GCGACTTGGTGATTTGGGTG+AGG | + | tig0023052:64424-64443 | None:intergenic | 55.0% |
| GTGGAAGTTATGCTCGGCAG+AGG | + | tig0023052:64597-64616 | None:intergenic | 55.0% | |
| ! | CTCACTGGAGAAAGTGCAGC+TGG | + | tig0023052:64866-64885 | None:intergenic | 55.0% |
| CGACCCCACTTAGTAAGGCT+TGG | + | tig0023052:65443-65462 | None:intergenic | 55.0% | |
| GTAGCCGACCCCACTTAGTA+AGG | + | tig0023052:65448-65467 | None:intergenic | 55.0% | |
| ACTAAGTGGGGTCGGCTACA+TGG | - | tig0023052:65449-65468 | Msa1404270:intron | 55.0% | |
| !! | TTGGTTCTACTGGCAGGTCG+CGG | + | tig0023052:65709-65728 | None:intergenic | 55.0% |
| GCAGGAGATCCAATGGCTCA+CGG | - | tig0023052:66536-66555 | Msa1404270:intron | 55.0% | |
| GATCCAGAGGACTTCCAGTC+AGG | - | tig0023052:66584-66603 | Msa1404270:intron | 55.0% | |
| AGTCCTGACTGGAAGTCCTC+TGG | + | tig0023052:66590-66609 | None:intergenic | 55.0% | |
| GATAAGCCCCTCCCATGCTT+TGG | - | tig0023052:66614-66633 | Msa1404270:intron | 55.0% | |
| TCCGCATCCAAAGCATGGGA+GGG | + | tig0023052:66624-66643 | None:intergenic | 55.0% | |
| TTCCGCATCCAAAGCATGGG+AGG | + | tig0023052:66625-66644 | None:intergenic | 55.0% | |
| CAGGCATTAGTGTGCTCGGT+AGG | - | tig0023052:67843-67862 | Msa1404270:intron | 55.0% | |
| GCTTGGAGCCAAGACCACTC+TGG | + | tig0023052:64016-64035 | None:intergenic | 60.0% | |
| GGCAGCAGTAGGTGCCTAAG+TGG | + | tig0023052:64616-64635 | None:intergenic | 60.0% | |
| GTAGCTGCAGTGGCAGCAGT+AGG | + | tig0023052:64627-64646 | None:intergenic | 60.0% | |
| ACTGCTGCCACTGCAGCTAC+TGG | - | tig0023052:64627-64646 | Msa1404270:CDS | 60.0% | |
| CTACTGGCAGGTCGCGGTTA+GGG | + | tig0023052:65703-65722 | None:intergenic | 60.0% | |
| TCTACTGGCAGGTCGCGGTT+AGG | + | tig0023052:65704-65723 | None:intergenic | 60.0% | |
| !! | TTGGTTCTACCGGCAGGTCG+CGG | + | tig0023052:65759-65778 | None:intergenic | 60.0% |
| CCGCATCCAAAGCATGGGAG+GGG | + | tig0023052:66623-66642 | None:intergenic | 60.0% | |
| ! | CCCCTCCCATGCTTTGGATG+CGG | - | tig0023052:66620-66639 | Msa1404270:intron | 60.0% |
| ATCGGAAGGACCCCAGGGAA+CGG | - | tig0023052:66812-66831 | Msa1404270:intron | 60.0% | |
| AGACCCTAACCGCGACCTGC+CGG | - | tig0023052:65747-65766 | Msa1404270:intron | 65.0% | |
| CTACCGGCAGGTCGCGGTTA+GGG | + | tig0023052:65753-65772 | None:intergenic | 65.0% | |
| TCTACCGGCAGGTCGCGGTT+AGG | + | tig0023052:65754-65773 | None:intergenic | 65.0% | |
| TCGGAAGGACCCCAGGGAAC+GGG | - | tig0023052:66813-66832 | Msa1404270:intron | 65.0% | |
| GAAGGACCCCAGGGAACGGG+CGG | - | tig0023052:66816-66835 | Msa1404270:intron | 70.0% | |
| AAGGACCCCAGGGAACGGGC+GGG | - | tig0023052:66817-66836 | Msa1404270:intron | 70.0% | |
| AGGACCCCAGGGAACGGGCG+GGG | - | tig0023052:66818-66837 | Msa1404270:intron | 75.0% | |
| ! | CCAGCCCCGCCCGTTCCCTG+GGG | + | tig0023052:66825-66844 | None:intergenic | 80.0% |
| ! | CCCAGCCCCGCCCGTTCCCT+GGG | + | tig0023052:66826-66845 | None:intergenic | 80.0% |
| ! | CCCAGGGAACGGGCGGGGCT+GGG | - | tig0023052:66823-66842 | Msa1404270:intron | 80.0% |
| ! | TCCCAGCCCCGCCCGTTCCC+TGG | + | tig0023052:66827-66846 | None:intergenic | 80.0% |
| ! | CCCCAGGGAACGGGCGGGGC+TGG | - | tig0023052:66822-66841 | Msa1404270:intron | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0023052 | gene | 62991 | 68216 | 62991 | ID=Msa1404270;Name=Msa1404270 |
| tig0023052 | mRNA | 62991 | 68216 | 62991 | ID=Msa1404270-mRNA-1;Parent=Msa1404270;Name=Msa1404270-mRNA-1;_AED=0.28;_eAED=0.29;_QI=283|0.8|0.83|1|0.6|0.5|6|0|126 |
| tig0023052 | exon | 62991 | 63002 | 62991 | ID=Msa1404270-mRNA-1:exon:19739;Parent=Msa1404270-mRNA-1 |
| tig0023052 | exon | 64346 | 64463 | 64346 | ID=Msa1404270-mRNA-1:exon:19738;Parent=Msa1404270-mRNA-1 |
| tig0023052 | exon | 64550 | 64676 | 64550 | ID=Msa1404270-mRNA-1:exon:19737;Parent=Msa1404270-mRNA-1 |
| tig0023052 | exon | 66943 | 67053 | 66943 | ID=Msa1404270-mRNA-1:exon:19736;Parent=Msa1404270-mRNA-1 |
| tig0023052 | exon | 67743 | 67812 | 67743 | ID=Msa1404270-mRNA-1:exon:19735;Parent=Msa1404270-mRNA-1 |
| tig0023052 | exon | 67994 | 68216 | 67994 | ID=Msa1404270-mRNA-1:exon:19734;Parent=Msa1404270-mRNA-1 |
| tig0023052 | five_prime_UTR | 67994 | 68216 | 67994 | ID=Msa1404270-mRNA-1:five_prime_utr;Parent=Msa1404270-mRNA-1 |
| tig0023052 | five_prime_UTR | 67753 | 67812 | 67753 | ID=Msa1404270-mRNA-1:five_prime_utr;Parent=Msa1404270-mRNA-1 |
| tig0023052 | CDS | 67743 | 67752 | 67743 | ID=Msa1404270-mRNA-1:cds;Parent=Msa1404270-mRNA-1 |
| tig0023052 | CDS | 66943 | 67053 | 66943 | ID=Msa1404270-mRNA-1:cds;Parent=Msa1404270-mRNA-1 |
| tig0023052 | CDS | 64550 | 64676 | 64550 | ID=Msa1404270-mRNA-1:cds;Parent=Msa1404270-mRNA-1 |
| tig0023052 | CDS | 64346 | 64463 | 64346 | ID=Msa1404270-mRNA-1:cds;Parent=Msa1404270-mRNA-1 |
| tig0023052 | CDS | 62991 | 63002 | 62991 | ID=Msa1404270-mRNA-1:cds;Parent=Msa1404270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
