AlfalfaGEDB | Msa1266170

M. sativa cultivar zhongmu-4 / Msa1266170

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0005911 GO:0006412 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009506 GO:0009987 GO:0010467 GO:0015934 GO:0019538 GO:0022625 GO:0022626 GO:0030054 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0055044 GO:0071704 GO:0097159 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266170	XP_013458443.1	96.032	126	5	0	1	126	1	126	7.04e-86	256

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266170	I3SLJ0	96.032	126	5	0	1	126	1	126	3.36e-86	256

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0001830	Msa1266170	0.818967	1.486741e-52	-8.615850e-47
Msa0061500	Msa1266170	0.814945	1.189327e-51	-8.615850e-47
Msa0071480	Msa1266170	0.803190	3.924151e-49	-8.615850e-47
Msa0090380	Msa1266170	0.804066	2.581859e-49	-8.615850e-47
Msa0119440	Msa1266170	0.828932	6.829590e-55	-8.615850e-47
Msa0136630	Msa1266170	0.810840	9.435175e-51	-8.615850e-47
Msa0137860	Msa1266170	0.803616	3.202735e-49	-8.615850e-47
Msa0152560	Msa1266170	0.815822	7.590721e-52	-8.615850e-47
Msa0162690	Msa1266170	0.807602	4.666308e-50	-8.615850e-47
Msa0187310	Msa1266170	0.839764	1.303392e-57	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266170	MtrunA17_Chr4g0070831	96.032	126	5	0	1	126	1	126	6.47e-90	256
Msa1266170	MtrunA17_Chr8g0343111	74.603	63	16	0	51	113	8	70	2.35e-29	102

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1266170	AT4G26060.1	58.879	107	42	1	18	124	14	118	5.63e-43	138
Msa1266170	AT5G57060.7	50.413	121	55	2	7	124	1	119	1.03e-38	127
Msa1266170	AT5G57060.4	50.413	121	55	2	7	124	1	119	1.03e-38	127
Msa1266170	AT5G57060.9	50.413	121	55	2	7	124	1	119	1.03e-38	127
Msa1266170	AT5G57060.5	50.413	121	55	2	7	124	1	119	1.03e-38	127
Msa1266170	AT5G57060.1	50.413	121	55	2	7	124	1	119	1.03e-38	127
Msa1266170	AT5G57060.3	53.704	108	48	1	17	124	23	128	4.93e-38	125
Msa1266170	AT5G57060.6	53.704	108	48	1	17	124	23	128	4.93e-38	125
Msa1266170	AT5G57060.8	67.500	80	26	0	45	124	13	92	5.63e-38	124
Msa1266170	AT5G57060.2	67.500	80	26	0	45	124	13	92	5.63e-38	124

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Find 55 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGGACCCCAGGGAACGGGC+GGG	0.511815	8_2:+70923272	Msa1266170:CDS
AGAGAATGTTGATTTAAGAA+AGG	0.460736	8_2:+70920622	Msa1266170:CDS
AGAGATTACAGCAATTGCAG+AGG	0.673672	8_2:-70923303	None:intergenic
AGATCCAATGGCTCACGGAA+AGG	0.578977	8_2:+70922996	Msa1266170:CDS
AGGACAAGCAGGAGATCCAA+TGG	0.609106	8_2:+70922984	Msa1266170:intron
AGGACCCCAGGGAACGGGCG+GGG	0.417190	8_2:+70923273	Msa1266170:CDS
AGTCCTGACTGGAAGTCCTC+TGG	0.502119	8_2:-70923042	None:intergenic
AGTGTTATTTGAACAATTCA+AGG	0.392260	8_2:+70919858	Msa1266170:five_prime_UTR
ATCAAAATTCTTAAAAGAAA+CGG	0.429179	8_2:-70920663	None:intergenic
ATCATTATCGGAAGGACCCC+AGG	0.469804	8_2:+70923261	Msa1266170:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGATCAGATATATGCATT+TGG	-	chr8_2:70919722-70919741	None:intergenic	30.0%
TCTACAAAATCCATGGATAA+AGG	+	chr8_2:70919898-70919917	Msa1266170:exon	30.0%
TGATGTGAATTCAGAAATTG+TGG	+	chr8_2:70920364-70920383	Msa1266170:intron	30.0%
TTGAAAATGCTTAATGGAGA+TGG	-	chr8_2:70920565-70920584	None:intergenic	30.0%
GTAATTCAAGAGGTAACAAT+AGG	+	chr8_2:70920708-70920727	Msa1266170:intron	30.0%
GGATTTGATTAGGATTGATA+AGG	-	chr8_2:70920901-70920920	None:intergenic	30.0%
GGATGAAAAGAGATAATAAG+AGG	-	chr8_2:70921185-70921204	None:intergenic	30.0%
TCACTATAGCAAAGACAATT+GGG	-	chr8_2:70921390-70921409	None:intergenic	30.0%
AGATTTAGAGGTTAATGAGT+TGG	-	chr8_2:70921973-70921992	None:intergenic	30.0%
TTTGATAAATGCATGGTAGT+GGG	-	chr8_2:70922366-70922385	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_2	gene	70919446	70924671	70919446	ID=Msa1266170;Name=Msa1266170
chr8_2	mRNA	70919446	70924671	70919446	ID=Msa1266170-mRNA-1;Parent=Msa1266170;Name=Msa1266170-mRNA-1;_AED=0.28;_eAED=0.29;_QI=283\|0.8\|0.83\|1\|0.6\|0.5\|6\|0\|126
chr8_2	exon	70919446	70919668	70919446	ID=Msa1266170-mRNA-1:exon:23643;Parent=Msa1266170-mRNA-1
chr8_2	exon	70919850	70919919	70919850	ID=Msa1266170-mRNA-1:exon:23644;Parent=Msa1266170-mRNA-1
chr8_2	exon	70920609	70920719	70920609	ID=Msa1266170-mRNA-1:exon:23645;Parent=Msa1266170-mRNA-1
chr8_2	exon	70922986	70923112	70922986	ID=Msa1266170-mRNA-1:exon:23646;Parent=Msa1266170-mRNA-1
chr8_2	exon	70923199	70923316	70923199	ID=Msa1266170-mRNA-1:exon:23647;Parent=Msa1266170-mRNA-1
chr8_2	exon	70924660	70924671	70924660	ID=Msa1266170-mRNA-1:exon:23648;Parent=Msa1266170-mRNA-1
chr8_2	five_prime_UTR	70919446	70919668	70919446	ID=Msa1266170-mRNA-1:five_prime_utr;Parent=Msa1266170-mRNA-1
chr8_2	five_prime_UTR	70919850	70919909	70919850	ID=Msa1266170-mRNA-1:five_prime_utr;Parent=Msa1266170-mRNA-1
chr8_2	CDS	70919910	70919919	70919910	ID=Msa1266170-mRNA-1:cds;Parent=Msa1266170-mRNA-1
chr8_2	CDS	70920609	70920719	70920609	ID=Msa1266170-mRNA-1:cds;Parent=Msa1266170-mRNA-1
chr8_2	CDS	70922986	70923112	70922986	ID=Msa1266170-mRNA-1:cds;Parent=Msa1266170-mRNA-1
chr8_2	CDS	70923199	70923316	70923199	ID=Msa1266170-mRNA-1:cds;Parent=Msa1266170-mRNA-1
chr8_2	CDS	70924660	70924671	70924660	ID=Msa1266170-mRNA-1:cds;Parent=Msa1266170-mRNA-1

Gene Sequence	>Msa1266170 ATGGATAAAGATGGTAGGGTGGAAGAGAATGTTGATTTAAGAAAGGGCGTGGAATCGGCAAGATCCGTTTCTTTTAAGAATTTTGATCTTTTAAGGCCCTTTGCTCGGAGTAATTCAAGAGGACAAGCAGGAGATCCAATGGCTCACGGAAAGGGAAAGTATGCCTTAATTAGAGATCCAGAGGACTTCCAGTCAGGACTTTATGATAAGCCCCTCCCATGCTTTGGATGCGGAATTGGATGGTTCTCATTTCTTTTTGGATTTATTTGCCCTCCTATGTGGTTCTATGCAACAATTCTCTATTTTGGGAATCATTATCGGAAGGACCCCAGGGAACGGGCGGGGCTGGGAGCCTCTGCAATTGCTCAACTGGAATGT
Protein sequence	>Msa1266170 MDKDGRVEENVDLRKGVESARSVSFKNFDLLRPFARSNSRGQAGDPMAHGKGKYALIRDPEDFQSGLYDKPLPCFGCGIGWFSFLFGFICPPMWFYATILYFGNHYRKDPRERAGLGASAIAQLEC