Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662930 | RHN65509.1 | 63.953 | 172 | 31 | 1 | 5 | 145 | 1 | 172 | 2.54e-61 | 205 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662930 | A0A396IIQ7 | 63.953 | 172 | 31 | 1 | 5 | 145 | 1 | 172 | 1.22e-61 | 205 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611060 | Msa0662930 | 0.804136 | 2.497201e-49 | -8.615850e-47 |
| Msa0662930 | Msa0693750 | 0.813549 | 2.419472e-51 | -8.615850e-47 |
| Msa0662930 | Msa0873910 | 0.846425 | 2.189163e-59 | -8.615850e-47 |
| Msa0662930 | Msa0906660 | 0.843670 | 1.214935e-58 | -8.615850e-47 |
| Msa0662930 | Msa0975960 | 0.817886 | 2.613689e-52 | -8.615850e-47 |
| Msa0662930 | Msa1136760 | 0.801024 | 1.094544e-48 | -8.615850e-47 |
| Msa0199440 | Msa0662930 | 0.840626 | 7.762541e-58 | -8.615850e-47 |
| Msa0280160 | Msa0662930 | 0.833157 | 6.265541e-56 | -8.615850e-47 |
| Msa0331190 | Msa0662930 | 0.844101 | 9.314032e-59 | -8.615850e-47 |
| Msa0345050 | Msa0662930 | 0.815419 | 9.335155e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662930 | MtrunA17_Chr3g0080661 | 63.953 | 172 | 31 | 1 | 5 | 145 | 1 | 172 | 2.34e-65 | 205 |
| Msa0662930 | MtrunA17_Chr5g0426191 | 61.047 | 172 | 36 | 1 | 5 | 145 | 1 | 172 | 3.56e-58 | 187 |
| Msa0662930 | MtrunA17_Chr2g0294061 | 88.406 | 69 | 8 | 0 | 291 | 359 | 229 | 297 | 8.74e-36 | 132 |
| Msa0662930 | MtrunA17_Chr4g0023181 | 39.303 | 201 | 86 | 4 | 1 | 167 | 1 | 199 | 4.91e-35 | 127 |
| Msa0662930 | MtrunA17_Chr6g0464231 | 42.105 | 190 | 65 | 3 | 1 | 145 | 1 | 190 | 5.25e-35 | 127 |
| Msa0662930 | MtrunA17_Chr2g0294081 | 68.056 | 72 | 17 | 1 | 291 | 356 | 228 | 299 | 3.19e-24 | 100 |
| Msa0662930 | MtrunA17_Chr8g0374311 | 75.862 | 58 | 14 | 0 | 80 | 137 | 1 | 58 | 4.90e-20 | 82.8 |
| Msa0662930 | MtrunA17_Chr4g0068831 | 65.333 | 75 | 13 | 3 | 291 | 353 | 218 | 291 | 2.20e-19 | 87.4 |
| Msa0662930 | MtrunA17_Chr2g0294051 | 58.904 | 73 | 23 | 1 | 291 | 356 | 224 | 296 | 1.39e-18 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0662930 | AT1G47980.1 | 49.558 | 113 | 39 | 3 | 257 | 357 | 204 | 310 | 5.15e-22 | 95.5 |
| Msa0662930 | AT3G62730.1 | 50.000 | 78 | 27 | 1 | 291 | 356 | 224 | 301 | 2.91e-14 | 73.2 |
Find 90 sgRNAs with CRISPR-Local
Find 202 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCGTTGGTTCAGATTTC+TGG | 0.046752 | 4_4:+836396 | None:intergenic |
| TGCACACTTTGAGGTCTTTC+AGG | 0.143511 | 4_4:+835164 | None:intergenic |
| GGTGAAGGTGGAATATTATT+TGG | 0.170067 | 4_4:+835203 | None:intergenic |
| CGAAATCGTGGTACGATTTC+TGG | 0.177832 | 4_4:-834628 | Msa0662930:CDS |
| ATCTCTGAAGATGAAATATT+TGG | 0.215510 | 4_4:-836711 | Msa0662930:CDS |
| TCAGCACTTAGGAATAAATT+AGG | 0.219198 | 4_4:-834125 | Msa0662930:intron |
| TGCACTCACTGTTAATCTTT+TGG | 0.221470 | 4_4:+836310 | None:intergenic |
| TATGAGGCGTGGCACGATTT+TGG | 0.224425 | 4_4:-834568 | Msa0662930:CDS |
| CCCTTCTTCTTCCTCTTGTT+AGG | 0.256489 | 4_4:+836246 | None:intergenic |
| TGATTCTTTATGCCAGTTCA+TGG | 0.297046 | 4_4:-836277 | Msa0662930:CDS |
| ATCTGAACCAACGGAGGTTC+AGG | 0.312668 | 4_4:-836390 | Msa0662930:CDS |
| GAACTGACTTCAGCTTAAAT+AGG | 0.325600 | 4_4:+834530 | None:intergenic |
| ATTCTGGAAGTGCTGAAAAT+AGG | 0.343909 | 4_4:-834699 | Msa0662930:CDS |
| GAAATATTGAGAATTGTATA+TGG | 0.347955 | 4_4:-834017 | Msa0662930:CDS |
| CAGAAATCGTACCACGATTT+CGG | 0.350779 | 4_4:+834629 | None:intergenic |
| ACAATTCTCAATATTTCAAT+TGG | 0.353451 | 4_4:+834023 | None:intergenic |
| CCTTCTTCTTCCTCTTGTTA+GGG | 0.357760 | 4_4:+836247 | None:intergenic |
| ACTCCACGCAACAAATGAAT+AGG | 0.358476 | 4_4:+835063 | None:intergenic |
| CTAGTAAGGAGTTGAACTTT+TGG | 0.370289 | 4_4:-834996 | Msa0662930:CDS |
| ATCTCAGGAAATATCCTTGC+TGG | 0.373800 | 4_4:-834077 | Msa0662930:CDS |
| CTGCAACGTAACAATCTCTT+TGG | 0.375781 | 4_4:+836751 | None:intergenic |
| TTGATGCATGTCCTTCTCTA+AGG | 0.379732 | 4_4:-836349 | Msa0662930:CDS |
| ATATCAACACTCCTCACTTT+GGG | 0.387185 | 4_4:+836422 | None:intergenic |
| GCCGAACCAAACCTTCATTC+TGG | 0.391594 | 4_4:+834654 | None:intergenic |
| GGAATATTATTTGGATATGT+AGG | 0.398283 | 4_4:+835212 | None:intergenic |
| TAGCTCATCTTTAGCTAGTA+AGG | 0.411724 | 4_4:-835010 | Msa0662930:CDS |
| GGTGTGAAAAGCAGAAATTC+TGG | 0.416725 | 4_4:-834715 | Msa0662930:CDS |
| AATATCAACACTCCTCACTT+TGG | 0.435795 | 4_4:+836421 | None:intergenic |
| TTGTAACCAGAATGAAGGTT+TGG | 0.444531 | 4_4:-834660 | Msa0662930:CDS |
| TCAAAGGAAGTTGGGTAAGA+TGG | 0.447485 | 4_4:-836480 | Msa0662930:CDS |
| TAGGGATGAATTCCATGAAC+TGG | 0.451562 | 4_4:+836265 | None:intergenic |
| TCAGGGTTATAACGAGGCTT+AGG | 0.454545 | 4_4:+835182 | None:intergenic |
| TTGGGTACTATCGCTTGATC+AGG | 0.456786 | 4_4:-834977 | Msa0662930:intron |
| GCACACTTTGAGGTCTTTCA+GGG | 0.461675 | 4_4:+835165 | None:intergenic |
| AGCAAGGATATTTCCTGAGA+TGG | 0.467561 | 4_4:+834079 | None:intergenic |
| CAATCTCTTTGGTGTTATAG+AGG | 0.478504 | 4_4:+836762 | None:intergenic |
| ACATGAGTCTCAAAGGAAGT+TGG | 0.482821 | 4_4:-836489 | Msa0662930:CDS |
| CATGAGTCTCAAAGGAAGTT+GGG | 0.483447 | 4_4:-836488 | Msa0662930:CDS |
| CTCCACGCAACAAATGAATA+GGG | 0.483907 | 4_4:+835064 | None:intergenic |
| TGCGTGGAGTTGTGAATTGG+TGG | 0.486494 | 4_4:-835050 | Msa0662930:CDS |
| GAATCATGGCGCGATTTATG+AGG | 0.486813 | 4_4:-834584 | Msa0662930:CDS |
| ACCAGAATGAAGGTTTGGTT+CGG | 0.488542 | 4_4:-834655 | Msa0662930:CDS |
| TGTTGCGTGGAGTTGTGAAT+TGG | 0.489347 | 4_4:-835053 | Msa0662930:CDS |
| TAATTGTGAAGGGAAGAAAA+AGG | 0.509910 | 4_4:-836627 | Msa0662930:intron |
| GACAGAATTTCACAAGGTTG+TGG | 0.510219 | 4_4:-836456 | Msa0662930:CDS |
| AAAGATTAACAGTGAGTGCA+TGG | 0.511171 | 4_4:-836307 | Msa0662930:CDS |
| CCTCTAGGGTAGAAGCCACC+TGG | 0.517093 | 4_4:+833975 | None:intergenic |
| ATAACACCATCTCCTCCTCT+AGG | 0.519512 | 4_4:+833960 | None:intergenic |
| TTCCCTTCACAATTACTACC+TGG | 0.525199 | 4_4:+836635 | None:intergenic |
| ATAAAAGATGAACCCATCTC+AGG | 0.525491 | 4_4:-834092 | Msa0662930:CDS |
| TGATAGACAGGTTAGCAGAC+AGG | 0.527036 | 4_4:-836790 | Msa0662930:CDS |
| GCAAGGATATTTCCTGAGAT+GGG | 0.529908 | 4_4:+834080 | None:intergenic |
| CCCTAACAAGAGGAAGAAGA+AGG | 0.533066 | 4_4:-836247 | Msa0662930:CDS |
| TTGAGAATTGTATATGGAAG+TGG | 0.548661 | 4_4:-834011 | Msa0662930:CDS |
| TGCATGTCCTTCTCTAAGGT+GGG | 0.548788 | 4_4:-836345 | Msa0662930:CDS |
| GTGTGGTGATCTTGTTGAGA+AGG | 0.551348 | 4_4:-836513 | Msa0662930:CDS |
| ATGCATGTCCTTCTCTAAGG+TGG | 0.551390 | 4_4:-836346 | Msa0662930:CDS |
| GTTATTTCCTGAACCTCCGT+TGG | 0.559733 | 4_4:+836383 | None:intergenic |
| TTCTACCCTAGAGGAGGAGA+TGG | 0.561993 | 4_4:-833966 | Msa0662930:CDS |
| CTCTAGGGTAGAAGCCACCT+GGG | 0.572783 | 4_4:+833976 | None:intergenic |
| CAACCAGGTAGTAATTGTGA+AGG | 0.578375 | 4_4:-836638 | Msa0662930:CDS |
| TGAGAGATGTGGTTGTTATG+AGG | 0.578465 | 4_4:-836666 | Msa0662930:CDS |
| TGGTTCGGCCACCGAAATCG+TGG | 0.588778 | 4_4:-834640 | Msa0662930:CDS |
| TTTCCAGAAATCTGAACCAA+CGG | 0.590544 | 4_4:-836399 | Msa0662930:CDS |
| AGAAGGCACATGAGTCTCAA+AGG | 0.594023 | 4_4:-836496 | Msa0662930:CDS |
| AACCCTATTCATTTGTTGCG+TGG | 0.594385 | 4_4:-835066 | Msa0662930:CDS |
| AGTGGTGATGAACATGTCCC+AGG | 0.596378 | 4_4:-833993 | Msa0662930:CDS |
| TAACACCATCTCCTCCTCTA+GGG | 0.597219 | 4_4:+833961 | None:intergenic |
| CCAGGTGGCTTCTACCCTAG+AGG | 0.599664 | 4_4:-833975 | Msa0662930:CDS |
| AAGCACTCCCACCTTAGAGA+AGG | 0.601091 | 4_4:+836338 | None:intergenic |
| AAGATTAACAGTGAGTGCAT+GGG | 0.602478 | 4_4:-836306 | Msa0662930:CDS |
| AGGAATAAATTAGGAAACGA+TGG | 0.607521 | 4_4:-834116 | Msa0662930:CDS |
| AACCAGGTAGTAATTGTGAA+GGG | 0.615505 | 4_4:-836637 | Msa0662930:CDS |
| TGTTATGAGGCAAATCAACC+AGG | 0.615908 | 4_4:-836653 | Msa0662930:CDS |
| AGAATTTCACAAGGTTGTGG+CGG | 0.617452 | 4_4:-836453 | Msa0662930:CDS |
| TGGAATTCATCCCTAACAAG+AGG | 0.620464 | 4_4:-836257 | Msa0662930:CDS |
| TTATAACGAGGCTTAGGTGA+AGG | 0.622831 | 4_4:+835188 | None:intergenic |
| TAACGAGGCTTAGGTGAAGG+TGG | 0.628780 | 4_4:+835191 | None:intergenic |
| TGGTACGATTTCTGGTGGCG+TGG | 0.633912 | 4_4:-834620 | Msa0662930:CDS |
| ATGGCGCGATTTATGAGGCG+TGG | 0.634449 | 4_4:-834579 | Msa0662930:CDS |
| CCAGAAATCTGAACCAACGG+AGG | 0.636463 | 4_4:-836396 | Msa0662930:CDS |
| CCTAACAAGAGGAAGAAGAA+GGG | 0.636953 | 4_4:-836246 | Msa0662930:intron |
| AATCGTGGTACGATTTCTGG+TGG | 0.647720 | 4_4:-834625 | Msa0662930:CDS |
| CGGAAGAAAATCCCAAAGTG+AGG | 0.662021 | 4_4:-836433 | Msa0662930:CDS |
| GGTGGCTTCTACCCTAGAGG+AGG | 0.663458 | 4_4:-833972 | Msa0662930:CDS |
| AAATCGTACCACGATTTCGG+TGG | 0.664848 | 4_4:+834632 | None:intergenic |
| TCGCTATTAAATGAGAGATG+TGG | 0.667125 | 4_4:-836677 | Msa0662930:CDS |
| GGTCTTTCAGGGTTATAACG+AGG | 0.679267 | 4_4:+835176 | None:intergenic |
| GATGGAGACAGAATTTCACA+AGG | 0.717285 | 4_4:-836462 | Msa0662930:CDS |
| GGTGATGAACATGTCCCAGG+TGG | 0.767815 | 4_4:-833990 | Msa0662930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTGGAAAAATAAAATT+TGG | + | chr4_4:834893-834912 | None:intergenic | 10.0% |
| !! | CAAATATAATAATTAAAATC+AGG | + | chr4_4:835042-835061 | None:intergenic | 10.0% |
| !! | AAAAAAAAAAAGAATGAAAA+AGG | - | chr4_4:835325-835344 | Msa0662930:intron | 10.0% |
| !! | AAAAAAAAAAGAATGAAAAA+GGG | - | chr4_4:835326-835345 | Msa0662930:intron | 10.0% |
| !! | AACATAATAATAAAAAGGAT+GGG | + | chr4_4:834593-834612 | None:intergenic | 15.0% |
| !! | AAACATAATAATAAAAAGGA+TGG | + | chr4_4:834594-834613 | None:intergenic | 15.0% |
| !! | AACACTCTATATAAGTAAAT+TGG | + | chr4_4:834908-834927 | None:intergenic | 20.0% |
| !! | ATAATAATTAAAATCAGGGT+AGG | + | chr4_4:835037-835056 | None:intergenic | 20.0% |
| !! | ATGTTGCTAAATAATAAGTT+TGG | - | chr4_4:835186-835205 | Msa0662930:CDS | 20.0% |
| !! | TGTTGCTAAATAATAAGTTT+GGG | - | chr4_4:835187-835206 | Msa0662930:CDS | 20.0% |
| !!! | TTTTTTTGAATACACCATTT+TGG | + | chr4_4:835309-835328 | None:intergenic | 20.0% |
| !!! | TTTAGAAATTTTCAAGCATA+TGG | - | chr4_4:835604-835623 | Msa0662930:intron | 20.0% |
| !! | GAATTAAAACATACATAAAC+TGG | + | chr4_4:836306-836325 | None:intergenic | 20.0% |
| !! | TTTACAAATAGCATAATCAA+TGG | + | chr4_4:836331-836350 | None:intergenic | 20.0% |
| !! | ACAATTCTCAATATTTCAAT+TGG | + | chr4_4:836703-836722 | None:intergenic | 20.0% |
| !! | GAAATATTGAGAATTGTATA+TGG | - | chr4_4:836706-836725 | Msa0662930:CDS | 20.0% |
| !! | ATCTCTGAAGATGAAATATT+TGG | - | chr4_4:834012-834031 | Msa0662930:CDS | 25.0% |
| ! | ACAAACAATTGTTACTAAAC+TGG | + | chr4_4:834752-834771 | None:intergenic | 25.0% |
| !! | TAGGTTTACAACTTTTTGTT+CGG | - | chr4_4:835089-835108 | Msa0662930:CDS | 25.0% |
| ! | ATAAATCCTAAAAGTCTCTA+AGG | + | chr4_4:835133-835152 | None:intergenic | 25.0% |
| ! | CTAACTCAGAAAAACAATAT+GGG | + | chr4_4:835156-835175 | None:intergenic | 25.0% |
| ! | GTTGCTAAATAATAAGTTTG+GGG | - | chr4_4:835188-835207 | Msa0662930:CDS | 25.0% |
| ! | ATGAAAACAATATGCCAAAA+TGG | - | chr4_4:835292-835311 | Msa0662930:intron | 25.0% |
| ! | AGAGAATAAGTGTAACAATT+GGG | + | chr4_4:835392-835411 | None:intergenic | 25.0% |
| ! | TAGAGAATAAGTGTAACAAT+TGG | + | chr4_4:835393-835412 | None:intergenic | 25.0% |
| ! | GGAATATTATTTGGATATGT+AGG | + | chr4_4:835514-835533 | None:intergenic | 25.0% |
| ! | NNNNNNNCATTTCAGCACTT+AGG | - | chr4_4:836587-836606 | Msa0662930:intron | 25.0% |
| TAATTGTGAAGGGAAGAAAA+AGG | - | chr4_4:834096-834115 | Msa0662930:CDS | 30.0% | |
| TCAGATTCAATCACATAACA+GGG | + | chr4_4:834688-834707 | None:intergenic | 30.0% | |
| TTCAGATTCAATCACATAAC+AGG | + | chr4_4:834689-834708 | None:intergenic | 30.0% | |
| GTAACAATTGTTTGTTCAAG+TGG | - | chr4_4:834757-834776 | Msa0662930:intron | 30.0% | |
| TGGTATTCCAAAAGTTCAAA+AGG | - | chr4_4:834777-834796 | Msa0662930:intron | 30.0% | |
| TATTCCAAAAGTTCAAAAGG+AGG | - | chr4_4:834780-834799 | Msa0662930:intron | 30.0% | |
| CTTACAGTGTTTAGATTTCT+GGG | + | chr4_4:834862-834881 | None:intergenic | 30.0% | |
| !! | GTTCTAGAAATGTAAAAGCA+TGG | + | chr4_4:834931-834950 | None:intergenic | 30.0% |
| ACAAAAAGTTGTAAACCTAC+CGG | + | chr4_4:835088-835107 | None:intergenic | 30.0% | |
| ! | TTACAACCTTAGAGACTTTT+AGG | - | chr4_4:835124-835143 | Msa0662930:intron | 30.0% |
| CCTAACTCAGAAAAACAATA+TGG | + | chr4_4:835157-835176 | None:intergenic | 30.0% | |
| !! | CCATATTGTTTTTCTGAGTT+AGG | - | chr4_4:835154-835173 | Msa0662930:intron | 30.0% |
| AATTTGCAACCAACTAAGTT+TGG | - | chr4_4:835221-835240 | Msa0662930:intron | 30.0% | |
| ATTTGCAACCAACTAAGTTT+GGG | - | chr4_4:835222-835241 | Msa0662930:intron | 30.0% | |
| TGGAACAACAATTCTTGTAA+AGG | + | chr4_4:835419-835438 | None:intergenic | 30.0% | |
| ! | ACAAGAATTGTTGTTCCAAA+AGG | - | chr4_4:835421-835440 | Msa0662930:intron | 30.0% |
| ATGTAGGCTACACAAAATAT+GGG | + | chr4_4:835498-835517 | None:intergenic | 30.0% | |
| TATGTAGGCTACACAAAATA+TGG | + | chr4_4:835499-835518 | None:intergenic | 30.0% | |
| ! | TAGTAAGGAGTTGAACTTTT+GGG | - | chr4_4:835728-835747 | Msa0662930:intron | 30.0% |
| TATTGCAAGTAGATTCCTTA+AGG | - | chr4_4:835797-835816 | Msa0662930:intron | 30.0% | |
| AAAATCGTAACCCTTAATTC+TGG | + | chr4_4:836218-836237 | None:intergenic | 30.0% | |
| ! | AGAATTAAGGGTTACGATTT+TGG | - | chr4_4:836217-836236 | Msa0662930:intron | 30.0% |
| ACAGCAACATAGATCAATTA+GGG | + | chr4_4:836410-836429 | None:intergenic | 30.0% | |
| TCAGCACTTAGGAATAAATT+AGG | - | chr4_4:836598-836617 | Msa0662930:intron | 30.0% | |
| AGGAATAAATTAGGAAACGA+TGG | - | chr4_4:836607-836626 | Msa0662930:intron | 30.0% | |
| TTGAGAATTGTATATGGAAG+TGG | - | chr4_4:836712-836731 | Msa0662930:CDS | 30.0% | |
| !! | CAATCTCTTTGGTGTTATAG+AGG | + | chr4_4:833964-833983 | None:intergenic | 35.0% |
| TCGCTATTAAATGAGAGATG+TGG | - | chr4_4:834046-834065 | Msa0662930:CDS | 35.0% | |
| AACCAGGTAGTAATTGTGAA+GGG | - | chr4_4:834086-834105 | Msa0662930:CDS | 35.0% | |
| ! | GAGAAGTATGATGTTTAGTG+TGG | - | chr4_4:834193-834212 | Msa0662930:intron | 35.0% |
| ATATCAACACTCCTCACTTT+GGG | + | chr4_4:834304-834323 | None:intergenic | 35.0% | |
| AATATCAACACTCCTCACTT+TGG | + | chr4_4:834305-834324 | None:intergenic | 35.0% | |
| TTTCCAGAAATCTGAACCAA+CGG | - | chr4_4:834324-834343 | Msa0662930:intron | 35.0% | |
| ! | TGCACTCACTGTTAATCTTT+TGG | + | chr4_4:834416-834435 | None:intergenic | 35.0% |
| AAAGATTAACAGTGAGTGCA+TGG | - | chr4_4:834416-834435 | Msa0662930:intron | 35.0% | |
| AAGATTAACAGTGAGTGCAT+GGG | - | chr4_4:834417-834436 | Msa0662930:intron | 35.0% | |
| TGATTCTTTATGCCAGTTCA+TGG | - | chr4_4:834446-834465 | Msa0662930:intron | 35.0% | |
| ATGACGTAAAAGAAAGCGAT+TGG | - | chr4_4:834557-834576 | Msa0662930:CDS | 35.0% | |
| ACTGAGTTATTCAAACACAC+TGG | + | chr4_4:834659-834678 | None:intergenic | 35.0% | |
| AGATTCAATCACATAACAGG+GGG | + | chr4_4:834686-834705 | None:intergenic | 35.0% | |
| CAGATTCAATCACATAACAG+GGG | + | chr4_4:834687-834706 | None:intergenic | 35.0% | |
| CCTTACAGTGTTTAGATTTC+TGG | + | chr4_4:834863-834882 | None:intergenic | 35.0% | |
| CCAGAAATCTAAACACTGTA+AGG | - | chr4_4:834860-834879 | Msa0662930:intron | 35.0% | |
| TCTAAACACTGTAAGGTTCA+TGG | - | chr4_4:834867-834886 | Msa0662930:intron | 35.0% | |
| ! | TTTTCTTAGCCAAATTGAGC+CGG | - | chr4_4:835066-835085 | Msa0662930:CDS | 35.0% |
| !! | CTCTAAGGTTGTAATGTAGT+TGG | + | chr4_4:835118-835137 | None:intergenic | 35.0% |
| ! | AATAAGTTTGGGGTTGCTAT+TGG | - | chr4_4:835198-835217 | Msa0662930:CDS | 35.0% |
| TTTGCAACCAACTAAGTTTG+GGG | - | chr4_4:835223-835242 | Msa0662930:intron | 35.0% | |
| ! | CAATCGAGTTTGAAGTTACT+CGG | + | chr4_4:835368-835387 | None:intergenic | 35.0% |
| TCCAAAAGGTGAATGAATGA+TGG | - | chr4_4:835435-835454 | Msa0662930:intron | 35.0% | |
| ! | TCCATCATTCATTCACCTTT+TGG | + | chr4_4:835439-835458 | None:intergenic | 35.0% |
| ! | ATTTTGTGCTTAACTTCCGT+AGG | - | chr4_4:835463-835482 | Msa0662930:intron | 35.0% |
| GGTGAAGGTGGAATATTATT+TGG | + | chr4_4:835523-835542 | None:intergenic | 35.0% | |
| TAGCTCATCTTTAGCTAGTA+AGG | - | chr4_4:835713-835732 | Msa0662930:intron | 35.0% | |
| ! | CTAGTAAGGAGTTGAACTTT+TGG | - | chr4_4:835727-835746 | Msa0662930:intron | 35.0% |
| CTTGCAATATTGACAATCGA+CGG | + | chr4_4:835786-835805 | None:intergenic | 35.0% | |
| AAGTAGATTCCTTAAGGACA+AGG | - | chr4_4:835803-835822 | Msa0662930:intron | 35.0% | |
| ! | ACAAGGAATGGTTCAAGTTT+GGG | - | chr4_4:835820-835839 | Msa0662930:intron | 35.0% |
| ACAAGCAAGCTTAAACAACA+AGG | - | chr4_4:835903-835922 | Msa0662930:intron | 35.0% | |
| !! | ATTCTGGAAGTGCTGAAAAT+AGG | - | chr4_4:836024-836043 | Msa0662930:intron | 35.0% |
| ! | CGATTTTGTAACCAGAATGA+AGG | - | chr4_4:836058-836077 | Msa0662930:intron | 35.0% |
| TTGTAACCAGAATGAAGGTT+TGG | - | chr4_4:836063-836082 | Msa0662930:intron | 35.0% | |
| ! | GAACTGACTTCAGCTTAAAT+AGG | + | chr4_4:836196-836215 | None:intergenic | 35.0% |
| TGAAGTCAGTTCCAGAATTA+AGG | - | chr4_4:836204-836223 | Msa0662930:intron | 35.0% | |
| GAAGTCAGTTCCAGAATTAA+GGG | - | chr4_4:836205-836224 | Msa0662930:intron | 35.0% | |
| AGCTAAATCTCTCAGAGATT+AGG | - | chr4_4:836364-836383 | Msa0662930:CDS | 35.0% | |
| AGGGTTACATAGATTCATCT+TGG | + | chr4_4:836391-836410 | None:intergenic | 35.0% | |
| CACAGCAACATAGATCAATT+AGG | + | chr4_4:836411-836430 | None:intergenic | 35.0% | |
| ATAAAAGATGAACCCATCTC+AGG | - | chr4_4:836631-836650 | Msa0662930:CDS | 35.0% | |
| CTGCAACGTAACAATCTCTT+TGG | + | chr4_4:833975-833994 | None:intergenic | 40.0% | |
| TGAGAGATGTGGTTGTTATG+AGG | - | chr4_4:834057-834076 | Msa0662930:CDS | 40.0% | |
| TGTTATGAGGCAAATCAACC+AGG | - | chr4_4:834070-834089 | Msa0662930:CDS | 40.0% | |
| CAACCAGGTAGTAATTGTGA+AGG | - | chr4_4:834085-834104 | Msa0662930:CDS | 40.0% | |
| TTCCCTTCACAATTACTACC+TGG | + | chr4_4:834091-834110 | None:intergenic | 40.0% | |
| ACATGAGTCTCAAAGGAAGT+TGG | - | chr4_4:834234-834253 | Msa0662930:intron | 40.0% | |
| CATGAGTCTCAAAGGAAGTT+GGG | - | chr4_4:834235-834254 | Msa0662930:intron | 40.0% | |
| TCAAAGGAAGTTGGGTAAGA+TGG | - | chr4_4:834243-834262 | Msa0662930:intron | 40.0% | |
| GATGGAGACAGAATTTCACA+AGG | - | chr4_4:834261-834280 | Msa0662930:intron | 40.0% | |
| GACAGAATTTCACAAGGTTG+TGG | - | chr4_4:834267-834286 | Msa0662930:intron | 40.0% | |
| AGAATTTCACAAGGTTGTGG+CGG | - | chr4_4:834270-834289 | Msa0662930:intron | 40.0% | |
| TTGATGCATGTCCTTCTCTA+AGG | - | chr4_4:834374-834393 | Msa0662930:intron | 40.0% | |
| TAGGGATGAATTCCATGAAC+TGG | + | chr4_4:834461-834480 | None:intergenic | 40.0% | |
| TGGAATTCATCCCTAACAAG+AGG | - | chr4_4:834466-834485 | Msa0662930:intron | 40.0% | |
| CCTTCTTCTTCCTCTTGTTA+GGG | + | chr4_4:834479-834498 | None:intergenic | 40.0% | |
| CCTAACAAGAGGAAGAAGAA+GGG | - | chr4_4:834477-834496 | Msa0662930:intron | 40.0% | |
| ACGTAAAAGAAAGCGATTGG+TGG | - | chr4_4:834560-834579 | Msa0662930:CDS | 40.0% | |
| CGTAAAAGAAAGCGATTGGT+GGG | - | chr4_4:834561-834580 | Msa0662930:CDS | 40.0% | |
| ! | CACTCCTCCTTTTGAACTTT+TGG | + | chr4_4:834787-834806 | None:intergenic | 40.0% |
| GAGGAGTGACTTGATTTCAA+AGG | - | chr4_4:834799-834818 | Msa0662930:intron | 40.0% | |
| GATTTCAAAGGCGAAGTGTA+CGG | - | chr4_4:834811-834830 | Msa0662930:intron | 40.0% | |
| AGTGTACGGCAGTTAAAGAT+AGG | - | chr4_4:834825-834844 | Msa0662930:intron | 40.0% | |
| TCTTTGTCATTAGCACACTG+AGG | - | chr4_4:834978-834997 | Msa0662930:CDS | 40.0% | |
| AATCAGGGTAGGCTTCAAAA+AGG | + | chr4_4:835026-835045 | None:intergenic | 40.0% | |
| GGCTCAATTTGGCTAAGAAA+AGG | + | chr4_4:835067-835086 | None:intergenic | 40.0% | |
| !! | ATATGGGTTAGGCATTCCTA+CGG | + | chr4_4:835482-835501 | None:intergenic | 40.0% |
| GGCTACACAAAATATGGGTT+AGG | + | chr4_4:835493-835512 | None:intergenic | 40.0% | |
| TTATAACGAGGCTTAGGTGA+AGG | + | chr4_4:835538-835557 | None:intergenic | 40.0% | |
| CAATGTCAATGCACACTTTG+AGG | + | chr4_4:835571-835590 | None:intergenic | 40.0% | |
| ! | AACCCTATTCATTTGTTGCG+TGG | - | chr4_4:835657-835676 | Msa0662930:intron | 40.0% |
| CTCCACGCAACAAATGAATA+GGG | + | chr4_4:835662-835681 | None:intergenic | 40.0% | |
| ACTCCACGCAACAAATGAAT+AGG | + | chr4_4:835663-835682 | None:intergenic | 40.0% | |
| GATTCCTTAAGGACAAGGAA+TGG | - | chr4_4:835808-835827 | Msa0662930:intron | 40.0% | |
| TGAACCATTCCTTGTCCTTA+AGG | + | chr4_4:835815-835834 | None:intergenic | 40.0% | |
| ! | GACAAGGAATGGTTCAAGTT+TGG | - | chr4_4:835819-835838 | Msa0662930:intron | 40.0% |
| ! | CAAGGAATGGTTCAAGTTTG+GGG | - | chr4_4:835821-835840 | Msa0662930:intron | 40.0% |
| ! | TGTAGCAATTTTAGACAGCC+TGG | - | chr4_4:835984-836003 | Msa0662930:intron | 40.0% |
| GGTGTGAAAAGCAGAAATTC+TGG | - | chr4_4:836008-836027 | Msa0662930:intron | 40.0% | |
| ! | ACCAGAATGAAGGTTTGGTT+CGG | - | chr4_4:836068-836087 | Msa0662930:intron | 40.0% |
| CAGAAATCGTACCACGATTT+CGG | + | chr4_4:836097-836116 | None:intergenic | 40.0% | |
| GCAAGGATATTTCCTGAGAT+GGG | + | chr4_4:836646-836665 | None:intergenic | 40.0% | |
| AGCAAGGATATTTCCTGAGA+TGG | + | chr4_4:836647-836666 | None:intergenic | 40.0% | |
| ATCTCAGGAAATATCCTTGC+TGG | - | chr4_4:836646-836665 | Msa0662930:CDS | 40.0% | |
| ! | GTGAATTTTCATCACCAGCA+AGG | + | chr4_4:836663-836682 | None:intergenic | 40.0% |
| TGATAGACAGGTTAGCAGAC+AGG | - | chr4_4:833933-833952 | Msa0662930:CDS | 45.0% | |
| GTGTGGTGATCTTGTTGAGA+AGG | - | chr4_4:834210-834229 | Msa0662930:intron | 45.0% | |
| ! | AGAAGGCACATGAGTCTCAA+AGG | - | chr4_4:834227-834246 | Msa0662930:intron | 45.0% |
| CGGAAGAAAATCCCAAAGTG+AGG | - | chr4_4:834290-834309 | Msa0662930:intron | 45.0% | |
| ! | GTTATTTCCTGAACCTCCGT+TGG | + | chr4_4:834343-834362 | None:intergenic | 45.0% |
| ! | ATGCATGTCCTTCTCTAAGG+TGG | - | chr4_4:834377-834396 | Msa0662930:intron | 45.0% |
| !! | TGCATGTCCTTCTCTAAGGT+GGG | - | chr4_4:834378-834397 | Msa0662930:intron | 45.0% |
| CCCTAACAAGAGGAAGAAGA+AGG | - | chr4_4:834476-834495 | Msa0662930:intron | 45.0% | |
| CCCTTCTTCTTCCTCTTGTT+AGG | + | chr4_4:834480-834499 | None:intergenic | 45.0% | |
| CATATTTGCCACCCTAACAG+TGG | - | chr4_4:834517-834536 | Msa0662930:intron | 45.0% | |
| TGACGCTTCAACCACTGTTA+GGG | + | chr4_4:834531-834550 | None:intergenic | 45.0% | |
| TTGACGCTTCAACCACTGTT+AGG | + | chr4_4:834532-834551 | None:intergenic | 45.0% | |
| AAAAGAAAGCGATTGGTGGG+AGG | - | chr4_4:834564-834583 | Msa0662930:CDS | 45.0% | |
| TAGGCTTCAAAAAGGCTCAC+AGG | + | chr4_4:835018-835037 | None:intergenic | 45.0% | |
| !! | GTAAACCTACCGGCTCAATT+TGG | + | chr4_4:835078-835097 | None:intergenic | 45.0% |
| ! | CAACCAACTAAGTTTGGGGT+GGG | - | chr4_4:835227-835246 | Msa0662930:intron | 45.0% |
| ! | AACCAACTAAGTTTGGGGTG+GGG | - | chr4_4:835228-835247 | Msa0662930:intron | 45.0% |
| TCAGGGTTATAACGAGGCTT+AGG | + | chr4_4:835544-835563 | None:intergenic | 45.0% | |
| GGTCTTTCAGGGTTATAACG+AGG | + | chr4_4:835550-835569 | None:intergenic | 45.0% | |
| !! | GCACACTTTGAGGTCTTTCA+GGG | + | chr4_4:835561-835580 | None:intergenic | 45.0% |
| !! | TGCACACTTTGAGGTCTTTC+AGG | + | chr4_4:835562-835581 | None:intergenic | 45.0% |
| TGTTGCGTGGAGTTGTGAAT+TGG | - | chr4_4:835670-835689 | Msa0662930:intron | 45.0% | |
| TTGGGTACTATCGCTTGATC+AGG | - | chr4_4:835746-835765 | Msa0662930:intron | 45.0% | |
| ! | AGCAATTTTAGACAGCCTGG+AGG | - | chr4_4:835987-836006 | Msa0662930:intron | 45.0% |
| !! | TTTCTGCTTTTCACACCTCC+AGG | + | chr4_4:836005-836024 | None:intergenic | 45.0% |
| AAATCGTACCACGATTTCGG+TGG | + | chr4_4:836094-836113 | None:intergenic | 45.0% | |
| CGAAATCGTGGTACGATTTC+TGG | - | chr4_4:836095-836114 | Msa0662930:intron | 45.0% | |
| ! | AATCGTGGTACGATTTCTGG+TGG | - | chr4_4:836098-836117 | Msa0662930:intron | 45.0% |
| ! | GCGCGATTTTTGCAGAATCA+TGG | - | chr4_4:836125-836144 | Msa0662930:intron | 45.0% |
| GAATCATGGCGCGATTTATG+AGG | - | chr4_4:836139-836158 | Msa0662930:intron | 45.0% | |
| TAACACCATCTCCTCCTCTA+GGG | + | chr4_4:836765-836784 | None:intergenic | 45.0% | |
| ATAACACCATCTCCTCCTCT+AGG | + | chr4_4:836766-836785 | None:intergenic | 45.0% | |
| !! | ATAAAAACATAATAATAAAA+AGG | + | chr4_4:834598-834617 | None:intergenic | 5.0% |
| !! | AAATATAATAATTAAAATCA+GGG | + | chr4_4:835041-835060 | None:intergenic | 5.0% |
| !! | CCTCCGTTGGTTCAGATTTC+TGG | + | chr4_4:834330-834349 | None:intergenic | 50.0% |
| CCAGAAATCTGAACCAACGG+AGG | - | chr4_4:834327-834346 | Msa0662930:intron | 50.0% | |
| ATCTGAACCAACGGAGGTTC+AGG | - | chr4_4:834333-834352 | Msa0662930:intron | 50.0% | |
| AAGCACTCCCACCTTAGAGA+AGG | + | chr4_4:834388-834407 | None:intergenic | 50.0% | |
| !! | CACACTGAGGCAAAAGTGCT+TGG | - | chr4_4:834991-835010 | Msa0662930:CDS | 50.0% |
| CTTAGCCAAATTGAGCCGGT+AGG | - | chr4_4:835070-835089 | Msa0662930:CDS | 50.0% | |
| GCAACCAACTAAGTTTGGGG+TGG | - | chr4_4:835226-835245 | Msa0662930:intron | 50.0% | |
| ! | ACCAACTAAGTTTGGGGTGG+GGG | - | chr4_4:835229-835248 | Msa0662930:intron | 50.0% |
| TAACGAGGCTTAGGTGAAGG+TGG | + | chr4_4:835535-835554 | None:intergenic | 50.0% | |
| TGCGTGGAGTTGTGAATTGG+TGG | - | chr4_4:835673-835692 | Msa0662930:intron | 50.0% | |
| GCCGAACCAAACCTTCATTC+TGG | + | chr4_4:836072-836091 | None:intergenic | 50.0% | |
| ! | TATGAGGCGTGGCACGATTT+TGG | - | chr4_4:836155-836174 | Msa0662930:intron | 50.0% |
| ! | ATGAGGCGTGGCACGATTTT+GGG | - | chr4_4:836156-836175 | Msa0662930:intron | 50.0% |
| ! | AGTGGTGATGAACATGTCCC+AGG | - | chr4_4:836730-836749 | Msa0662930:CDS | 50.0% |
| TTCTACCCTAGAGGAGGAGA+TGG | - | chr4_4:836757-836776 | Msa0662930:CDS | 50.0% | |
| CGCTTCAACCACTGTTAGGG+TGG | + | chr4_4:834528-834547 | None:intergenic | 55.0% | |
| ACCCCCACCCCAAACTTAGT+TGG | + | chr4_4:835233-835252 | None:intergenic | 55.0% | |
| !! | TGGTACGATTTCTGGTGGCG+TGG | - | chr4_4:836103-836122 | Msa0662930:intron | 55.0% |
| ATGGCGCGATTTATGAGGCG+TGG | - | chr4_4:836144-836163 | Msa0662930:intron | 55.0% | |
| CACCCAGAAGACTGCAGAAG+AGG | - | chr4_4:836261-836280 | Msa0662930:CDS | 55.0% | |
| CGCCTCTTCTGCAGTCTTCT+GGG | + | chr4_4:836266-836285 | None:intergenic | 55.0% | |
| TCGCCTCTTCTGCAGTCTTC+TGG | + | chr4_4:836267-836286 | None:intergenic | 55.0% | |
| GGTGATGAACATGTCCCAGG+TGG | - | chr4_4:836733-836752 | Msa0662930:CDS | 55.0% | |
| !! | CTCTAGGGTAGAAGCCACCT+GGG | + | chr4_4:836750-836769 | None:intergenic | 55.0% |
| ! | TGGTTCGGCCACCGAAATCG+TGG | - | chr4_4:836083-836102 | Msa0662930:intron | 60.0% |
| !! | CCTCTAGGGTAGAAGCCACC+TGG | + | chr4_4:836751-836770 | None:intergenic | 60.0% |
| CCAGGTGGCTTCTACCCTAG+AGG | - | chr4_4:836748-836767 | Msa0662930:CDS | 60.0% | |
| GGTGGCTTCTACCCTAGAGG+AGG | - | chr4_4:836751-836770 | Msa0662930:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 833932 | 836813 | 833932 | ID=Msa0662930;Name=Msa0662930 |
| chr4_4 | mRNA | 833932 | 836813 | 833932 | ID=Msa0662930-mRNA-1;Parent=Msa0662930;Name=Msa0662930-mRNA-1;_AED=0.83;_eAED=0.83;_QI=0|0|0|0.16|1|1|6|0|359 |
| chr4_4 | exon | 836628 | 836813 | 836628 | ID=Msa0662930-mRNA-1:exon:375;Parent=Msa0662930-mRNA-1 |
| chr4_4 | exon | 836247 | 836534 | 836247 | ID=Msa0662930-mRNA-1:exon:374;Parent=Msa0662930-mRNA-1 |
| chr4_4 | exon | 835171 | 835234 | 835171 | ID=Msa0662930-mRNA-1:exon:373;Parent=Msa0662930-mRNA-1 |
| chr4_4 | exon | 834978 | 835108 | 834978 | ID=Msa0662930-mRNA-1:exon:372;Parent=Msa0662930-mRNA-1 |
| chr4_4 | exon | 834538 | 834743 | 834538 | ID=Msa0662930-mRNA-1:exon:371;Parent=Msa0662930-mRNA-1 |
| chr4_4 | exon | 833932 | 834136 | 833932 | ID=Msa0662930-mRNA-1:exon:370;Parent=Msa0662930-mRNA-1 |
| chr4_4 | CDS | 836628 | 836813 | 836628 | ID=Msa0662930-mRNA-1:cds;Parent=Msa0662930-mRNA-1 |
| chr4_4 | CDS | 836247 | 836534 | 836247 | ID=Msa0662930-mRNA-1:cds;Parent=Msa0662930-mRNA-1 |
| chr4_4 | CDS | 835171 | 835234 | 835171 | ID=Msa0662930-mRNA-1:cds;Parent=Msa0662930-mRNA-1 |
| chr4_4 | CDS | 834978 | 835108 | 834978 | ID=Msa0662930-mRNA-1:cds;Parent=Msa0662930-mRNA-1 |
| chr4_4 | CDS | 834538 | 834743 | 834538 | ID=Msa0662930-mRNA-1:cds;Parent=Msa0662930-mRNA-1 |
| chr4_4 | CDS | 833932 | 834136 | 833932 | ID=Msa0662930-mRNA-1:cds;Parent=Msa0662930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
