AlfalfaGEDB | Msa0975960

M. sativa cultivar zhongmu-4 / Msa0975960

KEGG: K13264|K14329
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0008150 GO:0008152 GO:0008374 GO:0009058 GO:0009718 GO:0009812 GO:0009813 GO:0016420 GO:0016740 GO:0016746 GO:0016747 GO:0042440 GO:0044424 GO:0044444 GO:0044464 GO:0046148 GO:0046283 GO:0047634 GO:0050736 GO:0071704 GO:1901576
PFAM: PF02458.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0975960	XP_013451021.1	94.493	454	25	0	6	459	4	457	0.0	885

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0975960	sp\|Q940Z5\|PMAT1_ARATH	35.307	473	271	13	8	457	8	468	6.87e-82	263

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0975960	A0A072U6Q7	94.493	454	25	0	6	459	4	457	0.0	885

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000800	Msa0975960	0.815228	1.029393e-51	-8.615850e-47
Msa0002110	Msa0975960	-0.824401	8.237162e-54	-8.615850e-47
Msa0002690	Msa0975960	-0.804175	2.450681e-49	-8.615850e-47
Msa0002700	Msa0975960	-0.802669	5.028427e-49	-8.615850e-47
Msa0004180	Msa0975960	-0.835831	1.334597e-56	-8.615850e-47
Msa0007810	Msa0975960	-0.807809	4.216735e-50	-8.615850e-47
Msa0011060	Msa0975960	-0.806509	7.948150e-50	-8.615850e-47
Msa0011410	Msa0975960	-0.804331	2.274002e-49	-8.615850e-47
Msa0011440	Msa0975960	-0.821512	3.882448e-53	-8.615850e-47
Msa0011870	Msa0975960	0.830511	2.817749e-55	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0975960	MtrunA17_Chr6g0454761	94.493	454	25	0	6	459	4	457	0.0	884
Msa0975960	MtrunA17_Chr6g0454761	79.221	462	87	3	4	459	487	945	0.0	723
Msa0975960	MtrunA17_Chr6g0455341	54.310	464	194	8	8	459	6	463	4.23e-169	483
Msa0975960	MtrunA17_Chr6g0455361	57.045	440	177	7	25	459	28	460	1.50e-166	477
Msa0975960	MtrunA17_Chr7g0219331	46.004	463	228	9	11	458	98	553	1.39e-139	411
Msa0975960	MtrunA17_Chr6g0455351	48.707	464	183	10	9	459	7	428	1.21e-136	399
Msa0975960	MtrunA17_Chr7g0219301	44.902	461	232	10	11	456	5	458	3.63e-131	400
Msa0975960	MtrunA17_Chr7g0219301	43.629	259	133	6	207	458	631	883	8.35e-55	196
Msa0975960	MtrunA17_Chr7g0219301	44.860	107	54	2	27	133	533	634	5.25e-23	102
Msa0975960	MtrunA17_Chr7g0219291	41.239	468	254	10	6	456	352	815	7.47e-107	335

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0975960	AT5G39090.1	35.652	460	275	10	5	457	3	448	8.79e-87	273
Msa0975960	AT5G39050.1	35.307	473	271	13	8	457	8	468	6.99e-83	263
Msa0975960	AT3G29635.1	35.244	471	266	15	9	457	2	455	3.38e-81	259
Msa0975960	AT3G29590.1	33.839	461	277	13	8	457	6	449	2.47e-80	256
Msa0975960	AT3G29680.1	35.281	445	267	11	22	457	16	448	3.19e-80	256
Msa0975960	AT3G29670.1	34.624	439	264	9	29	458	27	451	1.02e-77	249
Msa0975960	AT5G39080.1	33.049	469	276	15	8	452	3	457	2.72e-76	246
Msa0975960	AT5G61160.1	30.568	458	295	11	9	454	2	448	9.71e-75	242
Msa0975960	AT1G03940.1	31.210	471	286	15	11	457	9	465	1.42e-58	200
Msa0975960	AT1G03495.1	33.233	331	193	11	20	332	19	339	2.99e-38	142

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Find 80 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAATAAGTGCAACAAA+TGG	0.550059	6_4:-9783708	Msa0975960:CDS
AAAACAGTTAATCCCAAGTT+TGG	0.285883	6_4:-9784039	Msa0975960:CDS
AAAGAAAGTTAAGGGAAAAG+TGG	0.493670	6_4:+9784346	None:intergenic
AAAGAAGTGGTTGATACATT+TGG	0.269259	6_4:+9784269	None:intergenic
AAAGTTAAGGGAAAAGTGGT+TGG	0.535581	6_4:+9784350	None:intergenic
AAATAATTTGCATTAATTGG+TGG	0.462390	6_4:+9783480	None:intergenic
AAATGGTGTGTTAAATGGTT+TGG	0.391639	6_4:-9783346	Msa0975960:CDS
AAATTATACACCTCAAACCT+AGG	0.524375	6_4:+9783246	None:intergenic
AACAAATAATCGAAGCTTAA+AGG	0.216613	6_4:-9783736	Msa0975960:CDS
AACCACTTCCTCCTTCTTGT+TGG	0.407332	6_4:-9784197	Msa0975960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAAGAAAGTTAAGGGAAAAG+TGG	+	chr6_4:9783150-9783169	None:intergenic	30.0%
AGTGTGTCAAAGAAAGTTAA+GGG	+	chr6_4:9783158-9783177	None:intergenic	30.0%
TAGTGTGTCAAAGAAAGTTA+AGG	+	chr6_4:9783159-9783178	None:intergenic	30.0%
TAACTTTCTTTGACACACTA+TGG	-	chr6_4:9783159-9783178	Msa0975960:CDS	30.0%
AATGGAATCAAAGAAAGAAG+TGG	+	chr6_4:9783240-9783259	None:intergenic	30.0%
ATATGATGTTACCAACAAGA+AGG	+	chr6_4:9783310-9783329	None:intergenic	30.0%
TTTGACTCAGCTACAATTAA+GGG	+	chr6_4:9783386-9783405	None:intergenic	30.0%
ATTTGACTCAGCTACAATTA+AGG	+	chr6_4:9783387-9783406	None:intergenic	30.0%
AAAACAGTTAATCCCAAGTT+TGG	-	chr6_4:9783454-9783473	Msa0975960:CDS	30.0%
CATGTGAAATTTCCAAACTT+GGG	+	chr6_4:9783469-9783488	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6_4	gene	9783068	9784447	9783068	ID=Msa0975960;Name=Msa0975960
chr6_4	mRNA	9783068	9784447	9783068	ID=Msa0975960-mRNA-1;Parent=Msa0975960;Name=Msa0975960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|459
chr6_4	exon	9783068	9784447	9783068	ID=Msa0975960-mRNA-1:exon:3566;Parent=Msa0975960-mRNA-1
chr6_4	CDS	9783068	9784447	9783068	ID=Msa0975960-mRNA-1:cds;Parent=Msa0975960-mRNA-1

Gene Sequence

>Msa0975960

ATGGCAACATTACCATCATCAACATCTATCAGAGTTCATAAAGTTCTTTCTATAGCACCACAAAATGAAACCTCCCCAACCACTTTTCCCTTAACTTTCTTTGACACACTATGGATAAGACAACCACCAGTTGAACGTCTCTTCTTCTATGAACTCCCAAATGTATCAACCACTTCTTTCTTTGATTCCATTCTTCCAAATCTCAAACACTCTCTTGAACTCACACTCAACCACTTCCTCCTTCTTGTTGGTAACATCATATGGCCACAAGATTCACCACATCCCATCATCAACTATGTCCCTAGTGATTCCATTCCCTTAATTGTAGCTGAGTCAAATGAAAATTTCAATCTCTTATGTTCCAATCTTTGTGAAGTTGAAAAAAGAAAACAGTTAATCCCAAGTTTGGAAATTTCACATGAAAAAGCATCAATTATTTCACTACAAGTCACTTTTTTTCCTAACCATGGATTTGGTATTGGTATAACCACACACCATGCAGCTGTTGATGGAAAATCTTCAACTTTGTTTATGAATGCTTGGTCTTATTTTTGTTCCAACCTTGAAAAAAACACACCCTCTATGTTTTTACCTCAAAATCTAACACCTTTTTTTGATAGGTCCATTATAAAAGACCCTTTAGGAATAAATGAAATTCATTCAAAAAAATGGATGAATGTTGGTGGAGAAACAAATAATCGAAGCTTAAAGGTTTGGAAAACAATAAGTGCAACAAATGGTGAAGCAGTCAAAGGTTTGTTTGAATTATCACCTTTGGATATTCAAAAGCTTAAGAAATATGCACAATCTAAGGTTGAAAATAAAAAGGTTTCAACTTTTGCGGTTACATGTGCTTATTTGTTGTCATTAGGGGTTAAAGTTGACCAACAAAAACCCAACAAGGCATTTTTGGTTTTTGGTGTTGATTGTAGGTCACGTTTGGATCCACCAATTAATGCAAATTATTTTGGGAATTGTATTGTGTCAAGATTAGTTGTGCATGAAACTGAGGCATTGTTAGAAGATGGTGGGTTTATTAGTGCTCTTAAAGGGATAATTGATGTGTTGAGTGATTTGGAAAATGGTGTGTTAAATGGTTTGGAAAATTGGATGTCAATGATGCAATCTAAAACATCTAGAACGGATGAGACTTATAAGATTTTTTCTATTACCGGGTCACCTAGGTTTGAGGTGTATAATTTTGATTTTGGGTGGGGTAAGCCTAAGAAAGTTGATGTTACTTCGGTTGATAGACCAGGAGCTTTTTATCTTTCAGGAAATAGGAATAATGATGGTGGAATTGAGATTGGTTTGACTTTGAACAAGCAACAAATGGAGGTTTTTGCTCGACTTTTTGTTCAAGGACTTGAATCCTTGTAA

Protein sequence

>Msa0975960

MATLPSSTSIRVHKVLSIAPQNETSPTTFPLTFFDTLWIRQPPVERLFFYELPNVSTTSFFDSILPNLKHSLELTLNHFLLLVGNIIWPQDSPHPIINYVPSDSIPLIVAESNENFNLLCSNLCEVEKRKQLIPSLEISHEKASIISLQVTFFPNHGFGIGITTHHAAVDGKSSTLFMNAWSYFCSNLEKNTPSMFLPQNLTPFFDRSIIKDPLGINEIHSKKWMNVGGETNNRSLKVWKTISATNGEAVKGLFELSPLDIQKLKKYAQSKVENKKVSTFAVTCAYLLSLGVKVDQQKPNKAFLVFGVDCRSRLDPPINANYFGNCIVSRLVVHETEALLEDGGFISALKGIIDVLSDLENGVLNGLENWMSMMQSKTSRTDETYKIFSITGSPRFEVYNFDFGWGKPKKVDVTSVDRPGAFYLSGNRNNDGGIEIGLTLNKQQMEVFARLFVQGLESL*