AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0611060


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611060 MtrunA17_Chr4g0044361 97.619 210 5 0 1 210 1 210 1.05e-149 414
Msa0611060 MtrunA17_Chr1g0160291 64.815 216 65 5 1 210 1 211 2.97e-86 253
Msa0611060 MtrunA17_Chr3g0111521 47.222 216 99 7 1 205 1 212 1.05e-52 168
Msa0611060 MtrunA17_Chr5g0435091 48.309 207 89 6 1 198 1 198 1.37e-52 168
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0611060 AT2G01340.1 53.636 220 86 3 1 209 1 215 6.84e-64 197
Msa0611060 AT1G71015.1 50.898 167 70 3 1 163 1 159 5.99e-44 145
Msa0611060 AT1G71015.2 50.898 167 70 3 1 163 1 159 5.99e-44 145
Msa0611060 AT1G66480.1 46.927 179 75 6 1 164 1 174 1.29e-42 143
Msa0611060 AT5G37840.1 42.373 177 88 5 1 170 1 170 1.80e-36 127

Find 85 sgRNAs with CRISPR-Local

Find 272 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCGTGGTGTTCTCGGAGTTC+TGG 0.190070 4_2:+59058633 None:intergenic
CTTCTTGGTTTGGTTTCTTT+TGG 0.198709 4_2:+59058958 None:intergenic
AAAATTAGTTGCTATATATT+TGG 0.204979 4_2:-59057683 Msa0611060:three_prime_UTR
GATGATTATGCGTTTGTATA+AGG 0.275789 4_2:-59058707 Msa0611060:CDS
ACAAGAAAATAAAGCCTCTT+TGG 0.283419 4_2:+59058988 None:intergenic
CAAAGATAGACTTGATAATT+TGG 0.287354 4_2:-59058908 Msa0611060:CDS
CAGTTAAGCATTATGGTGTT+AGG 0.299381 4_2:-59059044 Msa0611060:CDS
CAAATTATCAAGTCTATCTT+TGG 0.302648 4_2:+59058909 None:intergenic
GTACTAATGGGGAACACTTT+TGG 0.306983 4_2:-59059186 Msa0611060:exon
TCTGAAGCAGTTAAGCATTA+TGG 0.310517 4_2:-59059051 Msa0611060:CDS
CATTAATTTGAGGTACTAAT+GGG 0.319642 4_2:-59059198 Msa0611060:exon
TTTGGCACTCATTTGAATTC+CGG 0.326729 4_2:+59058927 None:intergenic
TCATTAATTTGAGGTACTAA+TGG 0.329912 4_2:-59059199 Msa0611060:exon
TTAATGAACAAAATTTGTTT+AGG 0.332335 4_2:+59059215 None:intergenic
ATTCCGGAACGAATTCTTCT+TGG 0.341703 4_2:+59058943 None:intergenic
CGTGGTGTTCTCGGAGTTCT+GGG 0.353729 4_2:+59058634 None:intergenic
GGAACGAATTCTTCTTGGTT+TGG 0.362859 4_2:+59058948 None:intergenic
CAAACCTGTCGTGGTGTTCT+CGG 0.372324 4_2:+59058625 None:intergenic
AACTAGTTAGCCCTTGGCTT+TGG 0.373757 4_2:-59059337 Msa0611060:five_prime_UTR
TGAATCCCTCCTTCGTTGCT+TGG 0.382019 4_2:+59057914 None:intergenic
TGTATAAGGCCAGTGGCAAC+GGG 0.386719 4_2:-59058693 Msa0611060:CDS
AATCACGTGGGTGCTATTCC+TGG 0.388059 4_2:-59057874 Msa0611060:three_prime_UTR
GAATGATAATAGTGGTGAAT+TGG 0.395463 4_2:-59058833 Msa0611060:CDS
ACTCCTACATGTGTACATAT+TGG 0.409310 4_2:-59057589 Msa0611060:three_prime_UTR
AGGAGAATGGTGGTGGGGTG+AGG 0.419131 4_2:-59058804 Msa0611060:CDS
CTCGGAGTTCTGGGAGTCCT+CGG 0.421641 4_2:+59058643 None:intergenic
ACAAAGGTCATGAAAATAGA+TGG 0.431872 4_2:-59059150 Msa0611060:CDS
TAACTAGTTCGAATGAGAAT+TGG 0.455131 4_2:+59059351 None:intergenic
GAAGGTAAGGAGAATGGTGG+TGG 0.456506 4_2:-59058811 Msa0611060:CDS
AAAAGCTGGAGAAGTGCTTA+AGG 0.461047 4_2:-59059100 Msa0611060:CDS
TTGTATAAGGCCAGTGGCAA+CGG 0.462177 4_2:-59058694 Msa0611060:CDS
TTGATAATTTGGTGCTTACA+AGG 0.466360 4_2:-59058897 Msa0611060:CDS
CATTCGAACTAGTTAGCCCT+TGG 0.469383 4_2:-59059343 Msa0611060:five_prime_UTR
TTGTGAGTATGAGGCACTAT+TGG 0.471558 4_2:+59059247 None:intergenic
AGTAAAATGAATGATAATAG+TGG 0.471671 4_2:-59058841 Msa0611060:CDS
GGCCAGTGGCAACGGGGAAA+AGG 0.474476 4_2:-59058686 Msa0611060:CDS
AGTTAAGCATTATGGTGTTA+GGG 0.475824 4_2:-59059043 Msa0611060:CDS
AGTCACACACAAGTCACAAC+TGG 0.479164 4_2:+59057645 None:intergenic
AACTTCTCCACCTCTGCCTT+AGG 0.479167 4_2:+59058766 None:intergenic
TAGTGGTGAATTGGAAGGTA+AGG 0.479293 4_2:-59058824 Msa0611060:CDS
GAACTATTCATACAATACAT+AGG 0.512450 4_2:+59057613 None:intergenic
AACTCCGAGAACACCACGAC+AGG 0.520187 4_2:-59058629 Msa0611060:intron
ACAATACGTAGGATCACAAC+AGG 0.520702 4_2:-59057785 Msa0611060:three_prime_UTR
GTTGAAAGTTAGACTTCCTA+AGG 0.523556 4_2:-59058782 Msa0611060:CDS
ATATATTTGGTTGAGACACC+AGG 0.526749 4_2:-59057670 Msa0611060:three_prime_UTR
CGAATGAGAATTGGTGGGTG+GGG 0.528217 4_2:+59059360 None:intergenic
CTAGTTCGAATGAGAATTGG+TGG 0.536448 4_2:+59059354 None:intergenic
GCATTATGGTGTTAGGGCAA+AGG 0.538688 4_2:-59059037 Msa0611060:CDS
AAGGTAAGGAGAATGGTGGT+GGG 0.541122 4_2:-59058810 Msa0611060:CDS
TCGAATGAGAATTGGTGGGT+GGG 0.549743 4_2:+59059359 None:intergenic
GATAATAGTGGTGAATTGGA+AGG 0.553555 4_2:-59058829 Msa0611060:CDS
AGCTTGGTGAGAAATTCTCC+AGG 0.553827 4_2:+59057856 None:intergenic
TTGTTACAAAACCAAAGCCA+AGG 0.553890 4_2:+59059326 None:intergenic
ATATAGGGGATATATATATG+TGG 0.571599 4_2:-59057541 Msa0611060:three_prime_UTR
TAGACTTCCTAAGGCAGAGG+TGG 0.572018 4_2:-59058773 Msa0611060:CDS
TGTTACAAAACCAAAGCCAA+GGG 0.574086 4_2:+59059327 None:intergenic
TGAGTATGAGGCACTATTGG+TGG 0.574546 4_2:+59059250 None:intergenic
GAATTGGAAGGTAAGGAGAA+TGG 0.578575 4_2:-59058817 Msa0611060:CDS
TTATGCCAAGCAACGAAGGA+GGG 0.580061 4_2:-59057919 Msa0611060:CDS
GAGAATTTCTCACCAAGCTG+AGG 0.580066 4_2:-59057852 Msa0611060:three_prime_UTR
ATAACAAAATCTCCTCAGCT+TGG 0.584488 4_2:+59057840 None:intergenic
AAACCAAGAAGAATTCGTTC+CGG 0.593057 4_2:-59058946 Msa0611060:CDS
TTAAAGTTCAAGAGAGTCCG+AGG 0.593074 4_2:-59058660 Msa0611060:CDS
TCTCCAATATGTACACATGT+AGG 0.597522 4_2:+59057586 None:intergenic
AGTTAGACTTCCTAAGGCAG+AGG 0.603968 4_2:-59058776 Msa0611060:CDS
GAATCTAACAAAACAAGACC+TGG 0.606823 4_2:+59059072 None:intergenic
AAATGAAAACAAACCTGTCG+TGG 0.607412 4_2:+59058616 None:intergenic
TTCGAATGAGAATTGGTGGG+TGG 0.609086 4_2:+59059358 None:intergenic
CTATTATTCATACAATACGT+AGG 0.615286 4_2:-59057796 Msa0611060:three_prime_UTR
CACAAGTCACAACTGGACCC+TGG 0.615301 4_2:+59057652 None:intergenic
GATGAGAGATTGTAAAGATG+AGG 0.620097 4_2:-59058743 Msa0611060:CDS
TTTATGCCAAGCAACGAAGG+AGG 0.621866 4_2:-59057920 Msa0611060:CDS
ACAAAGAGTTACAACCAAAG+AGG 0.621866 4_2:-59059002 Msa0611060:CDS
AGATTGTAAAGATGAGGCTG+AGG 0.623789 4_2:-59058737 Msa0611060:CDS
ATTAATTTGAGGTACTAATG+GGG 0.628618 4_2:-59059197 Msa0611060:exon
ATGCGTTTGTATAAGGCCAG+TGG 0.639943 4_2:-59058700 Msa0611060:CDS
TTGGAAGGTAAGGAGAATGG+TGG 0.655627 4_2:-59058814 Msa0611060:CDS
GAAGTGCTTAAGGATCATCC+AGG 0.665688 4_2:-59059090 Msa0611060:CDS
AGGAGGGATTCAAATAGCTG+TGG 0.671981 4_2:-59057903 Msa0611060:CDS
TAGTTCGAATGAGAATTGGT+GGG 0.673703 4_2:+59059355 None:intergenic
AGGTAAGGAGAATGGTGGTG+GGG 0.675900 4_2:-59058809 Msa0611060:CDS
TATATTTGGTTGAGACACCA+GGG 0.678523 4_2:-59057669 Msa0611060:three_prime_UTR
GCTGTGGCTTCATAATCACG+TGG 0.683173 4_2:-59057887 Msa0611060:exon
CTGTGGCTTCATAATCACGT+GGG 0.689383 4_2:-59057886 Msa0611060:exon
GTATAAGGCCAGTGGCAACG+GGG 0.765145 4_2:-59058692 Msa0611060:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATAGTTTTTTTTTTATG+AGG + chr4_2:59057648-59057667 None:intergenic 10.0%
!!! TATATGTTTTTTTTATATAG+GGG - chr4_2:59059374-59059393 Msa0611060:five_prime_UTR 10.0%
!!! TATATAGTTTTTTTTTTATG+AGG + chr4_2:59057648-59057667 None:intergenic 10.0%
!!! TATATGTTTTTTTTATATAG+GGG - chr4_2:59059374-59059393 Msa0611060:five_prime_UTR 10.0%
!!! TTAATGAACAAAATTTGTTT+AGG + chr4_2:59057717-59057736 None:intergenic 15.0%
!!! AAATTTTGTTCATTAATTTG+AGG - chr4_2:59057721-59057740 Msa0611060:three_prime_UTR 15.0%
!! ATTCTTGAAAGAATTTAAAA+GGG + chr4_2:59058552-59058571 None:intergenic 15.0%
!! TATTCTTGAAAGAATTTAAA+AGG + chr4_2:59058553-59058572 None:intergenic 15.0%
!!! ATTTTCTCTTTAAAAAAGTT+AGG - chr4_2:59058810-59058829 Msa0611060:CDS 15.0%
!!! AATTTTTTTAAAGTCAACAT+TGG + chr4_2:59058890-59058909 None:intergenic 15.0%
!!! TGTAATTAATTTTACAGAAA+AGG - chr4_2:59058980-59058999 Msa0611060:CDS 15.0%
!!! GTAATTAATTTTACAGAAAA+GGG - chr4_2:59058981-59059000 Msa0611060:CDS 15.0%
!! AAAATTAGTTGCTATATATT+TGG - chr4_2:59059246-59059265 Msa0611060:five_prime_UTR 15.0%
!!! TTAATGAACAAAATTTGTTT+AGG + chr4_2:59057717-59057736 None:intergenic 15.0%
!!! AAATTTTGTTCATTAATTTG+AGG - chr4_2:59057721-59057740 Msa0611060:three_prime_UTR 15.0%
!! ATTCTTGAAAGAATTTAAAA+GGG + chr4_2:59058552-59058571 None:intergenic 15.0%
!! TATTCTTGAAAGAATTTAAA+AGG + chr4_2:59058553-59058572 None:intergenic 15.0%
!!! ATTTTCTCTTTAAAAAAGTT+AGG - chr4_2:59058810-59058829 Msa0611060:CDS 15.0%
!!! AATTTTTTTAAAGTCAACAT+TGG + chr4_2:59058890-59058909 None:intergenic 15.0%
!!! TGTAATTAATTTTACAGAAA+AGG - chr4_2:59058980-59058999 Msa0611060:CDS 15.0%
!!! GTAATTAATTTTACAGAAAA+GGG - chr4_2:59058981-59059000 Msa0611060:CDS 15.0%
!! AAAATTAGTTGCTATATATT+TGG - chr4_2:59059246-59059265 Msa0611060:five_prime_UTR 15.0%
!! AGTAAAATGAATGATAATAG+TGG - chr4_2:59058088-59058107 Msa0611060:intron 20.0%
!! AATACAAAATTCTGCATTAA+CGG + chr4_2:59058395-59058414 None:intergenic 20.0%
!!! ATGCAGAATTTTGTATTATT+TGG - chr4_2:59058398-59058417 Msa0611060:intron 20.0%
!! ATGTGTTGAAAAAATTAGTT+TGG - chr4_2:59058626-59058645 Msa0611060:intron 20.0%
!! TTAAATTATCTTAAACACAC+AGG + chr4_2:59058723-59058742 None:intergenic 20.0%
!!! GTGTGTTTAAGATAATTTAA+AGG - chr4_2:59058723-59058742 Msa0611060:CDS 20.0%
!! ATTAATTACACAAACACTTT+AGG + chr4_2:59058970-59058989 None:intergenic 20.0%
!! AGTAAAATGAATGATAATAG+TGG - chr4_2:59058088-59058107 Msa0611060:intron 20.0%
!! AATACAAAATTCTGCATTAA+CGG + chr4_2:59058395-59058414 None:intergenic 20.0%
!!! ATGCAGAATTTTGTATTATT+TGG - chr4_2:59058398-59058417 Msa0611060:intron 20.0%
!! ATGTGTTGAAAAAATTAGTT+TGG - chr4_2:59058626-59058645 Msa0611060:intron 20.0%
!! TTAAATTATCTTAAACACAC+AGG + chr4_2:59058723-59058742 None:intergenic 20.0%
!!! GTGTGTTTAAGATAATTTAA+AGG - chr4_2:59058723-59058742 Msa0611060:CDS 20.0%
!! ATTAATTACACAAACACTTT+AGG + chr4_2:59058970-59058989 None:intergenic 20.0%
!! TCATTAATTTGAGGTACTAA+TGG - chr4_2:59057730-59057749 Msa0611060:three_prime_UTR 25.0%
!! CATTAATTTGAGGTACTAAT+GGG - chr4_2:59057731-59057750 Msa0611060:three_prime_UTR 25.0%
!! ATTAATTTGAGGTACTAATG+GGG - chr4_2:59057732-59057751 Msa0611060:three_prime_UTR 25.0%
! CAAATTATCAAGTCTATCTT+TGG + chr4_2:59058023-59058042 None:intergenic 25.0%
!! CAAAGATAGACTTGATAATT+TGG - chr4_2:59058021-59058040 Msa0611060:intron 25.0%
! ATACAAAATTCTGCATTAAC+GGG + chr4_2:59058394-59058413 None:intergenic 25.0%
!! TGCTTAATGAGTTTTTAATG+AGG + chr4_2:59058442-59058461 None:intergenic 25.0%
! AGCATTTGAACATATTCATT+TGG - chr4_2:59058458-59058477 Msa0611060:intron 25.0%
! ATTAGTACTTCTCTTCTAAA+AGG + chr4_2:59058773-59058792 None:intergenic 25.0%
! TCTTATGAATATTCAATCTG+TGG + chr4_2:59058855-59058874 None:intergenic 25.0%
! CTATTATTCATACAATACGT+AGG - chr4_2:59059133-59059152 Msa0611060:CDS 25.0%
!!! ACAACAGGTTACTATTTTTT+AGG - chr4_2:59059159-59059178 Msa0611060:CDS 25.0%
! GAACTATTCATACAATACAT+AGG + chr4_2:59059319-59059338 None:intergenic 25.0%
! ATATAGGGGATATATATATG+TGG - chr4_2:59059388-59059407 Msa0611060:five_prime_UTR 25.0%
!! TCATTAATTTGAGGTACTAA+TGG - chr4_2:59057730-59057749 Msa0611060:three_prime_UTR 25.0%
!! CATTAATTTGAGGTACTAAT+GGG - chr4_2:59057731-59057750 Msa0611060:three_prime_UTR 25.0%
!! ATTAATTTGAGGTACTAATG+GGG - chr4_2:59057732-59057751 Msa0611060:three_prime_UTR 25.0%
! CAAATTATCAAGTCTATCTT+TGG + chr4_2:59058023-59058042 None:intergenic 25.0%
!! CAAAGATAGACTTGATAATT+TGG - chr4_2:59058021-59058040 Msa0611060:intron 25.0%
! ATACAAAATTCTGCATTAAC+GGG + chr4_2:59058394-59058413 None:intergenic 25.0%
!! TGCTTAATGAGTTTTTAATG+AGG + chr4_2:59058442-59058461 None:intergenic 25.0%
! AGCATTTGAACATATTCATT+TGG - chr4_2:59058458-59058477 Msa0611060:intron 25.0%
! ATTAGTACTTCTCTTCTAAA+AGG + chr4_2:59058773-59058792 None:intergenic 25.0%
! TCTTATGAATATTCAATCTG+TGG + chr4_2:59058855-59058874 None:intergenic 25.0%
! CTATTATTCATACAATACGT+AGG - chr4_2:59059133-59059152 Msa0611060:CDS 25.0%
!!! ACAACAGGTTACTATTTTTT+AGG - chr4_2:59059159-59059178 Msa0611060:CDS 25.0%
! GAACTATTCATACAATACAT+AGG + chr4_2:59059319-59059338 None:intergenic 25.0%
! ATATAGGGGATATATATATG+TGG - chr4_2:59059388-59059407 Msa0611060:five_prime_UTR 25.0%
TAACTAGTTCGAATGAGAAT+TGG + chr4_2:59057581-59057600 None:intergenic 30.0%
!!! TTTTTAGCTTTGTGAGTATG+AGG + chr4_2:59057694-59057713 None:intergenic 30.0%
! ATCTATTTTCATGACCTTTG+TGG + chr4_2:59057780-59057799 None:intergenic 30.0%
ACAAAGGTCATGAAAATAGA+TGG - chr4_2:59057779-59057798 Msa0611060:three_prime_UTR 30.0%
CTAAAAACACCAATAAAAGC+TGG - chr4_2:59057815-59057834 Msa0611060:three_prime_UTR 30.0%
! AGTTAAGCATTATGGTGTTA+GGG - chr4_2:59057886-59057905 Msa0611060:exon 30.0%
ACAAGAAAATAAAGCCTCTT+TGG + chr4_2:59057944-59057963 None:intergenic 30.0%
!!! AAAGAGGCTTTATTTTCTTG+TGG - chr4_2:59057943-59057962 Msa0611060:intron 30.0%
!! TTGATAATTTGGTGCTTACA+AGG - chr4_2:59058032-59058051 Msa0611060:intron 30.0%
GAATGATAATAGTGGTGAAT+TGG - chr4_2:59058096-59058115 Msa0611060:intron 30.0%
GATGATTATGCGTTTGTATA+AGG - chr4_2:59058222-59058241 Msa0611060:intron 30.0%
TACAAAATTCTGCATTAACG+GGG + chr4_2:59058393-59058412 None:intergenic 30.0%
! GAGTTTTTAATGAGGATGAA+TGG + chr4_2:59058434-59058453 None:intergenic 30.0%
! TGGTGATTTTTACCCAAAAA+TGG - chr4_2:59058646-59058665 Msa0611060:CDS 30.0%
! GGTGATTTTTACCCAAAAAT+GGG - chr4_2:59058647-59058666 Msa0611060:CDS 30.0%
! GTGATTTTTACCCAAAAATG+GGG - chr4_2:59058648-59058667 Msa0611060:CDS 30.0%
! TGATTTTTACCCAAAAATGG+GGG - chr4_2:59058649-59058668 Msa0611060:CDS 30.0%
! ACACAAACACTTTAGGAAAA+TGG + chr4_2:59058963-59058982 None:intergenic 30.0%
TAACTAGTTCGAATGAGAAT+TGG + chr4_2:59057581-59057600 None:intergenic 30.0%
!!! TTTTTAGCTTTGTGAGTATG+AGG + chr4_2:59057694-59057713 None:intergenic 30.0%
! ATCTATTTTCATGACCTTTG+TGG + chr4_2:59057780-59057799 None:intergenic 30.0%
ACAAAGGTCATGAAAATAGA+TGG - chr4_2:59057779-59057798 Msa0611060:three_prime_UTR 30.0%
CTAAAAACACCAATAAAAGC+TGG - chr4_2:59057815-59057834 Msa0611060:three_prime_UTR 30.0%
! AGTTAAGCATTATGGTGTTA+GGG - chr4_2:59057886-59057905 Msa0611060:exon 30.0%
ACAAGAAAATAAAGCCTCTT+TGG + chr4_2:59057944-59057963 None:intergenic 30.0%
!!! AAAGAGGCTTTATTTTCTTG+TGG - chr4_2:59057943-59057962 Msa0611060:intron 30.0%
!! TTGATAATTTGGTGCTTACA+AGG - chr4_2:59058032-59058051 Msa0611060:intron 30.0%
GAATGATAATAGTGGTGAAT+TGG - chr4_2:59058096-59058115 Msa0611060:intron 30.0%
GATGATTATGCGTTTGTATA+AGG - chr4_2:59058222-59058241 Msa0611060:intron 30.0%
TACAAAATTCTGCATTAACG+GGG + chr4_2:59058393-59058412 None:intergenic 30.0%
! GAGTTTTTAATGAGGATGAA+TGG + chr4_2:59058434-59058453 None:intergenic 30.0%
! TGGTGATTTTTACCCAAAAA+TGG - chr4_2:59058646-59058665 Msa0611060:CDS 30.0%
! GGTGATTTTTACCCAAAAAT+GGG - chr4_2:59058647-59058666 Msa0611060:CDS 30.0%
! GTGATTTTTACCCAAAAATG+GGG - chr4_2:59058648-59058667 Msa0611060:CDS 30.0%
! TGATTTTTACCCAAAAATGG+GGG - chr4_2:59058649-59058668 Msa0611060:CDS 30.0%
! ACACAAACACTTTAGGAAAA+TGG + chr4_2:59058963-59058982 None:intergenic 30.0%
TAGTTCGAATGAGAATTGGT+GGG + chr4_2:59057577-59057596 None:intergenic 35.0%
TGTTACAAAACCAAAGCCAA+GGG + chr4_2:59057605-59057624 None:intergenic 35.0%
TTGTTACAAAACCAAAGCCA+AGG + chr4_2:59057606-59057625 None:intergenic 35.0%
TGGTTCAAAAAAGACCACAA+AGG - chr4_2:59057763-59057782 Msa0611060:three_prime_UTR 35.0%
GAATCTAACAAAACAAGACC+TGG + chr4_2:59057860-59057879 None:intergenic 35.0%
! TCTGAAGCAGTTAAGCATTA+TGG - chr4_2:59057878-59057897 Msa0611060:exon 35.0%
CAGTTAAGCATTATGGTGTT+AGG - chr4_2:59057885-59057904 Msa0611060:exon 35.0%
ACAAAGAGTTACAACCAAAG+AGG - chr4_2:59057927-59057946 Msa0611060:CDS 35.0%
!!! CTTCTTGGTTTGGTTTCTTT+TGG + chr4_2:59057974-59057993 None:intergenic 35.0%
AAACCAAGAAGAATTCGTTC+CGG - chr4_2:59057983-59058002 Msa0611060:intron 35.0%
TTTGGCACTCATTTGAATTC+CGG + chr4_2:59058005-59058024 None:intergenic 35.0%
GATAATAGTGGTGAATTGGA+AGG - chr4_2:59058100-59058119 Msa0611060:intron 35.0%
GTTGAAAGTTAGACTTCCTA+AGG - chr4_2:59058147-59058166 Msa0611060:intron 35.0%
GATGAGAGATTGTAAAGATG+AGG - chr4_2:59058186-59058205 Msa0611060:intron 35.0%
AAATGAAAACAAACCTGTCG+TGG + chr4_2:59058316-59058335 None:intergenic 35.0%
TCAATTCTCTTAGAATCGGA+GGG + chr4_2:59058370-59058389 None:intergenic 35.0%
!! CAAATTCTTCCCCCATTTTT+GGG + chr4_2:59058661-59058680 None:intergenic 35.0%
TTTGGTTAAGGGGTGAATTT+AGG - chr4_2:59058677-59058696 Msa0611060:CDS 35.0%
GGTGAATTTAGGCTATTTAG+TGG - chr4_2:59058688-59058707 Msa0611060:CDS 35.0%
TCTTAAACACACAGGCATTT+AGG + chr4_2:59058715-59058734 None:intergenic 35.0%
TATAAATGAGCATCACTACG+AGG - chr4_2:59058933-59058952 Msa0611060:CDS 35.0%
ATAACAAAATCTCCTCAGCT+TGG + chr4_2:59059092-59059111 None:intergenic 35.0%
ATATATTTGGTTGAGACACC+AGG - chr4_2:59059259-59059278 Msa0611060:five_prime_UTR 35.0%
TATATTTGGTTGAGACACCA+GGG - chr4_2:59059260-59059279 Msa0611060:five_prime_UTR 35.0%
ACTCCTACATGTGTACATAT+TGG - chr4_2:59059340-59059359 Msa0611060:five_prime_UTR 35.0%
TCTCCAATATGTACACATGT+AGG + chr4_2:59059346-59059365 None:intergenic 35.0%
TAGTTCGAATGAGAATTGGT+GGG + chr4_2:59057577-59057596 None:intergenic 35.0%
TGTTACAAAACCAAAGCCAA+GGG + chr4_2:59057605-59057624 None:intergenic 35.0%
TTGTTACAAAACCAAAGCCA+AGG + chr4_2:59057606-59057625 None:intergenic 35.0%
TGGTTCAAAAAAGACCACAA+AGG - chr4_2:59057763-59057782 Msa0611060:three_prime_UTR 35.0%
GAATCTAACAAAACAAGACC+TGG + chr4_2:59057860-59057879 None:intergenic 35.0%
! TCTGAAGCAGTTAAGCATTA+TGG - chr4_2:59057878-59057897 Msa0611060:exon 35.0%
CAGTTAAGCATTATGGTGTT+AGG - chr4_2:59057885-59057904 Msa0611060:exon 35.0%
ACAAAGAGTTACAACCAAAG+AGG - chr4_2:59057927-59057946 Msa0611060:CDS 35.0%
!!! CTTCTTGGTTTGGTTTCTTT+TGG + chr4_2:59057974-59057993 None:intergenic 35.0%
AAACCAAGAAGAATTCGTTC+CGG - chr4_2:59057983-59058002 Msa0611060:intron 35.0%
TTTGGCACTCATTTGAATTC+CGG + chr4_2:59058005-59058024 None:intergenic 35.0%
GATAATAGTGGTGAATTGGA+AGG - chr4_2:59058100-59058119 Msa0611060:intron 35.0%
GTTGAAAGTTAGACTTCCTA+AGG - chr4_2:59058147-59058166 Msa0611060:intron 35.0%
GATGAGAGATTGTAAAGATG+AGG - chr4_2:59058186-59058205 Msa0611060:intron 35.0%
AAATGAAAACAAACCTGTCG+TGG + chr4_2:59058316-59058335 None:intergenic 35.0%
TCAATTCTCTTAGAATCGGA+GGG + chr4_2:59058370-59058389 None:intergenic 35.0%
!! CAAATTCTTCCCCCATTTTT+GGG + chr4_2:59058661-59058680 None:intergenic 35.0%
TTTGGTTAAGGGGTGAATTT+AGG - chr4_2:59058677-59058696 Msa0611060:CDS 35.0%
GGTGAATTTAGGCTATTTAG+TGG - chr4_2:59058688-59058707 Msa0611060:CDS 35.0%
TCTTAAACACACAGGCATTT+AGG + chr4_2:59058715-59058734 None:intergenic 35.0%
TATAAATGAGCATCACTACG+AGG - chr4_2:59058933-59058952 Msa0611060:CDS 35.0%
ATAACAAAATCTCCTCAGCT+TGG + chr4_2:59059092-59059111 None:intergenic 35.0%
ATATATTTGGTTGAGACACC+AGG - chr4_2:59059259-59059278 Msa0611060:five_prime_UTR 35.0%
TATATTTGGTTGAGACACCA+GGG - chr4_2:59059260-59059279 Msa0611060:five_prime_UTR 35.0%
ACTCCTACATGTGTACATAT+TGG - chr4_2:59059340-59059359 Msa0611060:five_prime_UTR 35.0%
TCTCCAATATGTACACATGT+AGG + chr4_2:59059346-59059365 None:intergenic 35.0%
CTAGTTCGAATGAGAATTGG+TGG + chr4_2:59057578-59057597 None:intergenic 40.0%
! TTGTGAGTATGAGGCACTAT+TGG + chr4_2:59057685-59057704 None:intergenic 40.0%
! GTACTAATGGGGAACACTTT+TGG - chr4_2:59057743-59057762 Msa0611060:three_prime_UTR 40.0%
! AGCACTTCTCCAGCTTTTAT+TGG + chr4_2:59057827-59057846 None:intergenic 40.0%
!! AAAAGCTGGAGAAGTGCTTA+AGG - chr4_2:59057829-59057848 Msa0611060:three_prime_UTR 40.0%
GGAACGAATTCTTCTTGGTT+TGG + chr4_2:59057984-59058003 None:intergenic 40.0%
ATTCCGGAACGAATTCTTCT+TGG + chr4_2:59057989-59058008 None:intergenic 40.0%
TAGTGGTGAATTGGAAGGTA+AGG - chr4_2:59058105-59058124 Msa0611060:intron 40.0%
GAATTGGAAGGTAAGGAGAA+TGG - chr4_2:59058112-59058131 Msa0611060:intron 40.0%
AGATTGTAAAGATGAGGCTG+AGG - chr4_2:59058192-59058211 Msa0611060:intron 40.0%
TTAAAGTTCAAGAGAGTCCG+AGG - chr4_2:59058269-59058288 Msa0611060:intron 40.0%
GTCAATTCTCTTAGAATCGG+AGG + chr4_2:59058371-59058390 None:intergenic 40.0%
GGGGTCAATTCTCTTAGAAT+CGG + chr4_2:59058374-59058393 None:intergenic 40.0%
! CCAAATTCTTCCCCCATTTT+TGG + chr4_2:59058662-59058681 None:intergenic 40.0%
CCAAAAATGGGGGAAGAATT+TGG - chr4_2:59058659-59058678 Msa0611060:CDS 40.0%
ATGGGGGAAGAATTTGGTTA+AGG - chr4_2:59058665-59058684 Msa0611060:CDS 40.0%
TGGGGGAAGAATTTGGTTAA+GGG - chr4_2:59058666-59058685 Msa0611060:CDS 40.0%
!! AGTTTTATGCCAAGCAACGA+AGG - chr4_2:59059006-59059025 Msa0611060:CDS 40.0%
ACAATACGTAGGATCACAAC+AGG - chr4_2:59059144-59059163 Msa0611060:CDS 40.0%
CTAGTTCGAATGAGAATTGG+TGG + chr4_2:59057578-59057597 None:intergenic 40.0%
! TTGTGAGTATGAGGCACTAT+TGG + chr4_2:59057685-59057704 None:intergenic 40.0%
! GTACTAATGGGGAACACTTT+TGG - chr4_2:59057743-59057762 Msa0611060:three_prime_UTR 40.0%
! AGCACTTCTCCAGCTTTTAT+TGG + chr4_2:59057827-59057846 None:intergenic 40.0%
!! AAAAGCTGGAGAAGTGCTTA+AGG - chr4_2:59057829-59057848 Msa0611060:three_prime_UTR 40.0%
GGAACGAATTCTTCTTGGTT+TGG + chr4_2:59057984-59058003 None:intergenic 40.0%
ATTCCGGAACGAATTCTTCT+TGG + chr4_2:59057989-59058008 None:intergenic 40.0%
TAGTGGTGAATTGGAAGGTA+AGG - chr4_2:59058105-59058124 Msa0611060:intron 40.0%
GAATTGGAAGGTAAGGAGAA+TGG - chr4_2:59058112-59058131 Msa0611060:intron 40.0%
AGATTGTAAAGATGAGGCTG+AGG - chr4_2:59058192-59058211 Msa0611060:intron 40.0%
TTAAAGTTCAAGAGAGTCCG+AGG - chr4_2:59058269-59058288 Msa0611060:intron 40.0%
GTCAATTCTCTTAGAATCGG+AGG + chr4_2:59058371-59058390 None:intergenic 40.0%
GGGGTCAATTCTCTTAGAAT+CGG + chr4_2:59058374-59058393 None:intergenic 40.0%
! CCAAATTCTTCCCCCATTTT+TGG + chr4_2:59058662-59058681 None:intergenic 40.0%
CCAAAAATGGGGGAAGAATT+TGG - chr4_2:59058659-59058678 Msa0611060:CDS 40.0%
ATGGGGGAAGAATTTGGTTA+AGG - chr4_2:59058665-59058684 Msa0611060:CDS 40.0%
TGGGGGAAGAATTTGGTTAA+GGG - chr4_2:59058666-59058685 Msa0611060:CDS 40.0%
!! AGTTTTATGCCAAGCAACGA+AGG - chr4_2:59059006-59059025 Msa0611060:CDS 40.0%
ACAATACGTAGGATCACAAC+AGG - chr4_2:59059144-59059163 Msa0611060:CDS 40.0%
! TCGAATGAGAATTGGTGGGT+GGG + chr4_2:59057573-59057592 None:intergenic 45.0%
TTCGAATGAGAATTGGTGGG+TGG + chr4_2:59057574-59057593 None:intergenic 45.0%
CATTCGAACTAGTTAGCCCT+TGG - chr4_2:59057586-59057605 Msa0611060:three_prime_UTR 45.0%
AACTAGTTAGCCCTTGGCTT+TGG - chr4_2:59057592-59057611 Msa0611060:three_prime_UTR 45.0%
! TGAGTATGAGGCACTATTGG+TGG + chr4_2:59057682-59057701 None:intergenic 45.0%
! GAAGTGCTTAAGGATCATCC+AGG - chr4_2:59057839-59057858 Msa0611060:three_prime_UTR 45.0%
! GCATTATGGTGTTAGGGCAA+AGG - chr4_2:59057892-59057911 Msa0611060:exon 45.0%
TTGGAAGGTAAGGAGAATGG+TGG - chr4_2:59058115-59058134 Msa0611060:intron 45.0%
AAGGTAAGGAGAATGGTGGT+GGG - chr4_2:59058119-59058138 Msa0611060:intron 45.0%
AGTTAGACTTCCTAAGGCAG+AGG - chr4_2:59058153-59058172 Msa0611060:intron 45.0%
ATGCGTTTGTATAAGGCCAG+TGG - chr4_2:59058229-59058248 Msa0611060:intron 45.0%
TTGTATAAGGCCAGTGGCAA+CGG - chr4_2:59058235-59058254 Msa0611060:intron 45.0%
GGGGGAAGAATTTGGTTAAG+GGG - chr4_2:59058667-59058686 Msa0611060:CDS 45.0%
TTTATGCCAAGCAACGAAGG+AGG - chr4_2:59059009-59059028 Msa0611060:CDS 45.0%
TTATGCCAAGCAACGAAGGA+GGG - chr4_2:59059010-59059029 Msa0611060:CDS 45.0%
AGGAGGGATTCAAATAGCTG+TGG - chr4_2:59059026-59059045 Msa0611060:CDS 45.0%
CTGTGGCTTCATAATCACGT+GGG - chr4_2:59059043-59059062 Msa0611060:CDS 45.0%
! AGCTTGGTGAGAAATTCTCC+AGG + chr4_2:59059076-59059095 None:intergenic 45.0%
GAGAATTTCTCACCAAGCTG+AGG - chr4_2:59059077-59059096 Msa0611060:CDS 45.0%
AGTCACACACAAGTCACAAC+TGG + chr4_2:59059287-59059306 None:intergenic 45.0%
! TCGAATGAGAATTGGTGGGT+GGG + chr4_2:59057573-59057592 None:intergenic 45.0%
TTCGAATGAGAATTGGTGGG+TGG + chr4_2:59057574-59057593 None:intergenic 45.0%
CATTCGAACTAGTTAGCCCT+TGG - chr4_2:59057586-59057605 Msa0611060:three_prime_UTR 45.0%
AACTAGTTAGCCCTTGGCTT+TGG - chr4_2:59057592-59057611 Msa0611060:three_prime_UTR 45.0%
! TGAGTATGAGGCACTATTGG+TGG + chr4_2:59057682-59057701 None:intergenic 45.0%
! GAAGTGCTTAAGGATCATCC+AGG - chr4_2:59057839-59057858 Msa0611060:three_prime_UTR 45.0%
! GCATTATGGTGTTAGGGCAA+AGG - chr4_2:59057892-59057911 Msa0611060:exon 45.0%
TTGGAAGGTAAGGAGAATGG+TGG - chr4_2:59058115-59058134 Msa0611060:intron 45.0%
AAGGTAAGGAGAATGGTGGT+GGG - chr4_2:59058119-59058138 Msa0611060:intron 45.0%
AGTTAGACTTCCTAAGGCAG+AGG - chr4_2:59058153-59058172 Msa0611060:intron 45.0%
ATGCGTTTGTATAAGGCCAG+TGG - chr4_2:59058229-59058248 Msa0611060:intron 45.0%
TTGTATAAGGCCAGTGGCAA+CGG - chr4_2:59058235-59058254 Msa0611060:intron 45.0%
GGGGGAAGAATTTGGTTAAG+GGG - chr4_2:59058667-59058686 Msa0611060:CDS 45.0%
TTTATGCCAAGCAACGAAGG+AGG - chr4_2:59059009-59059028 Msa0611060:CDS 45.0%
TTATGCCAAGCAACGAAGGA+GGG - chr4_2:59059010-59059029 Msa0611060:CDS 45.0%
AGGAGGGATTCAAATAGCTG+TGG - chr4_2:59059026-59059045 Msa0611060:CDS 45.0%
CTGTGGCTTCATAATCACGT+GGG - chr4_2:59059043-59059062 Msa0611060:CDS 45.0%
! AGCTTGGTGAGAAATTCTCC+AGG + chr4_2:59059076-59059095 None:intergenic 45.0%
GAGAATTTCTCACCAAGCTG+AGG - chr4_2:59059077-59059096 Msa0611060:CDS 45.0%
AGTCACACACAAGTCACAAC+TGG + chr4_2:59059287-59059306 None:intergenic 45.0%
!!! ATTATATGTTTTTTTTATAT+AGG - chr4_2:59059372-59059391 Msa0611060:five_prime_UTR 5.0%
!!! TTATATGTTTTTTTTATATA+GGG - chr4_2:59059373-59059392 Msa0611060:five_prime_UTR 5.0%
!!! ATTATATGTTTTTTTTATAT+AGG - chr4_2:59059372-59059391 Msa0611060:five_prime_UTR 5.0%
!!! TTATATGTTTTTTTTATATA+GGG - chr4_2:59059373-59059392 Msa0611060:five_prime_UTR 5.0%
! CGAATGAGAATTGGTGGGTG+GGG + chr4_2:59057572-59057591 None:intergenic 50.0%
GAAGGTAAGGAGAATGGTGG+TGG - chr4_2:59058118-59058137 Msa0611060:intron 50.0%
! AGGTAAGGAGAATGGTGGTG+GGG - chr4_2:59058120-59058139 Msa0611060:intron 50.0%
TAGACTTCCTAAGGCAGAGG+TGG - chr4_2:59058156-59058175 Msa0611060:intron 50.0%
AACTTCTCCACCTCTGCCTT+AGG + chr4_2:59058166-59058185 None:intergenic 50.0%
TGTATAAGGCCAGTGGCAAC+GGG - chr4_2:59058236-59058255 Msa0611060:intron 50.0%
CAAACCTGTCGTGGTGTTCT+CGG + chr4_2:59058307-59058326 None:intergenic 50.0%
TGAATCCCTCCTTCGTTGCT+TGG + chr4_2:59059018-59059037 None:intergenic 50.0%
GCTGTGGCTTCATAATCACG+TGG - chr4_2:59059042-59059061 Msa0611060:CDS 50.0%
!! AATCACGTGGGTGCTATTCC+TGG - chr4_2:59059055-59059074 Msa0611060:CDS 50.0%
! CGAATGAGAATTGGTGGGTG+GGG + chr4_2:59057572-59057591 None:intergenic 50.0%
GAAGGTAAGGAGAATGGTGG+TGG - chr4_2:59058118-59058137 Msa0611060:intron 50.0%
! AGGTAAGGAGAATGGTGGTG+GGG - chr4_2:59058120-59058139 Msa0611060:intron 50.0%
TAGACTTCCTAAGGCAGAGG+TGG - chr4_2:59058156-59058175 Msa0611060:intron 50.0%
AACTTCTCCACCTCTGCCTT+AGG + chr4_2:59058166-59058185 None:intergenic 50.0%
TGTATAAGGCCAGTGGCAAC+GGG - chr4_2:59058236-59058255 Msa0611060:intron 50.0%
CAAACCTGTCGTGGTGTTCT+CGG + chr4_2:59058307-59058326 None:intergenic 50.0%
TGAATCCCTCCTTCGTTGCT+TGG + chr4_2:59059018-59059037 None:intergenic 50.0%
GCTGTGGCTTCATAATCACG+TGG - chr4_2:59059042-59059061 Msa0611060:CDS 50.0%
!! AATCACGTGGGTGCTATTCC+TGG - chr4_2:59059055-59059074 Msa0611060:CDS 50.0%
GTATAAGGCCAGTGGCAACG+GGG - chr4_2:59058237-59058256 Msa0611060:intron 55.0%
CGTGGTGTTCTCGGAGTTCT+GGG + chr4_2:59058298-59058317 None:intergenic 55.0%
TCGTGGTGTTCTCGGAGTTC+TGG + chr4_2:59058299-59058318 None:intergenic 55.0%
AACTCCGAGAACACCACGAC+AGG - chr4_2:59058300-59058319 Msa0611060:intron 55.0%
CACAAGTCACAACTGGACCC+TGG + chr4_2:59059280-59059299 None:intergenic 55.0%
GTATAAGGCCAGTGGCAACG+GGG - chr4_2:59058237-59058256 Msa0611060:intron 55.0%
CGTGGTGTTCTCGGAGTTCT+GGG + chr4_2:59058298-59058317 None:intergenic 55.0%
TCGTGGTGTTCTCGGAGTTC+TGG + chr4_2:59058299-59058318 None:intergenic 55.0%
AACTCCGAGAACACCACGAC+AGG - chr4_2:59058300-59058319 Msa0611060:intron 55.0%
CACAAGTCACAACTGGACCC+TGG + chr4_2:59059280-59059299 None:intergenic 55.0%
!! AGGAGAATGGTGGTGGGGTG+AGG - chr4_2:59058125-59058144 Msa0611060:intron 60.0%
! CTCCTTTTCCCCGTTGCCAC+TGG + chr4_2:59058248-59058267 None:intergenic 60.0%
!! CTCGGAGTTCTGGGAGTCCT+CGG + chr4_2:59058289-59058308 None:intergenic 60.0%
!! AGGAGAATGGTGGTGGGGTG+AGG - chr4_2:59058125-59058144 Msa0611060:intron 60.0%
! CTCCTTTTCCCCGTTGCCAC+TGG + chr4_2:59058248-59058267 None:intergenic 60.0%
!! CTCGGAGTTCTGGGAGTCCT+CGG + chr4_2:59058289-59058308 None:intergenic 60.0%
GGCCAGTGGCAACGGGGAAA+AGG - chr4_2:59058243-59058262 Msa0611060:intron 65.0%
GGCCAGTGGCAACGGGGAAA+AGG - chr4_2:59058243-59058262 Msa0611060:intron 65.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 59057540 59059411 59057540 ID=Msa0611060;Name=Msa0611060
chr4_2 mRNA 59057540 59059411 59057540 ID=Msa0611060-mRNA-1;Parent=Msa0611060;Name=Msa0611060-mRNA-1;_AED=0.00;_eAED=0.00;_QI=209|1|1|1|1|1|2|355|210
chr4_2 exon 59057540 59057954 59057540 ID=Msa0611060-mRNA-1:exon:15623;Parent=Msa0611060-mRNA-1
chr4_2 exon 59058630 59059411 59058630 ID=Msa0611060-mRNA-1:exon:15622;Parent=Msa0611060-mRNA-1
chr4_2 five_prime_UTR 59059203 59059411 59059203 ID=Msa0611060-mRNA-1:five_prime_utr;Parent=Msa0611060-mRNA-1
chr4_2 CDS 59058630 59059202 59058630 ID=Msa0611060-mRNA-1:cds;Parent=Msa0611060-mRNA-1
chr4_2 CDS 59057895 59057954 59057895 ID=Msa0611060-mRNA-1:cds;Parent=Msa0611060-mRNA-1
chr4_2 three_prime_UTR 59057540 59057894 59057540 ID=Msa0611060-mRNA-1:three_prime_utr;Parent=Msa0611060-mRNA-1
Gene Sequence

>Msa0611060

ATGGGGAACACTTTTGGTTCAAAAAAGACCACAAAGGTCATGAAAATAGATGGTGAAACAATGAAGCTAAAAACACCAATAAAAGCTGGAGAAGTGCTTAAGGATCATCCAGGTCTTGTTTTGTTAGATTCTGAAGCAGTTAAGCATTATGGTGTTAGGGCAAAGGCAATTGAAGCACACAAAGAGTTACAACCAAAGAGGCTTTATTTTCTTGTGGAGCTTCCAAAAGAAACCAAACCAAGAAGAATTCGTTCCGGAATTCAAATGAGTGCCAAAGATAGACTTGATAATTTGGTGCTTACAAGGAGATCTGCTTCTGATTTGTCAATTTTGAAACAAAGTAAAATGAATGATAATAGTGGTGAATTGGAAGGTAAGGAGAATGGTGGTGGGGTGAGGTTGAAAGTTAGACTTCCTAAGGCAGAGGTGGAGAAGTTGATGAGAGATTGTAAAGATGAGGCTGAGGCTGCAGAGATGATTATGCGTTTGTATAAGGCCAGTGGCAACGGGGAAAAGGAGATTAAAGTTCAAGAGAGTCCGAGGACTCCCAGAACTCCGAGAACACCACGACAGAAAAGGGTGAGTTTTATGCCAAGCAACGAAGGAGGGATTCAAATAGCTGTGGCTTCATAA

Protein sequence

>Msa0611060

MGNTFGSKKTTKVMKIDGETMKLKTPIKAGEVLKDHPGLVLLDSEAVKHYGVRAKAIEAHKELQPKRLYFLVELPKETKPRRIRSGIQMSAKDRLDNLVLTRRSASDLSILKQSKMNDNSGELEGKENGGGVRLKVRLPKAEVEKLMRDCKDEAEAAEMIMRLYKASGNGEKEIKVQESPRTPRTPRTPRQKRVSFMPSNEGGIQIAVAS*