Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663320 | XP_013454547.1 | 95.472 | 530 | 14 | 4 | 1 | 525 | 1 | 525 | 0.0 | 1025 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663320 | A0A072UHH6 | 95.472 | 530 | 14 | 4 | 1 | 525 | 1 | 525 | 0.0 | 1025 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626180 | Msa0663320 | 0.932625 | 6.425990e-95 | -8.615850e-47 |
| Msa0663320 | Msa0664030 | 0.993400 | 1.776741e-199 | -8.615850e-47 |
| Msa0527880 | Msa0663320 | 0.902068 | 1.413339e-78 | -8.615850e-47 |
| Msa0586160 | Msa0663320 | 0.938899 | 3.133290e-99 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663320 | MtrunA17_Chr4g0001981 | 95.472 | 530 | 14 | 4 | 1 | 525 | 1 | 525 | 0.0 | 1025 |
| Msa0663320 | MtrunA17_Chr4g0073561 | 50.214 | 468 | 203 | 9 | 60 | 519 | 51 | 496 | 2.85e-137 | 406 |
| Msa0663320 | MtrunA17_Chr1g0192751 | 44.737 | 190 | 96 | 3 | 65 | 253 | 42 | 223 | 4.61e-44 | 160 |
| Msa0663320 | MtrunA17_Chr6g0453721 | 38.049 | 205 | 109 | 5 | 60 | 262 | 1 | 189 | 3.86e-34 | 128 |
| Msa0663320 | MtrunA17_Chr6g0453841 | 34.091 | 220 | 112 | 6 | 60 | 262 | 1 | 204 | 1.47e-26 | 108 |
| Msa0663320 | MtrunA17_Chr4g0073591 | 65.217 | 69 | 24 | 0 | 126 | 194 | 14 | 82 | 1.13e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0663320 | AT2G24100.1 | 44.906 | 530 | 216 | 13 | 1 | 519 | 1 | 465 | 9.00e-130 | 386 |
| Msa0663320 | AT4G30780.1 | 50.398 | 377 | 150 | 7 | 17 | 370 | 26 | 388 | 4.51e-112 | 345 |
| Msa0663320 | AT4G30780.1 | 35.429 | 175 | 92 | 7 | 354 | 525 | 433 | 589 | 1.82e-13 | 73.6 |
| Msa0663320 | AT3G05770.2 | 40.000 | 215 | 119 | 4 | 60 | 265 | 20 | 233 | 8.94e-37 | 140 |
| Msa0663320 | AT3G05770.1 | 40.000 | 215 | 119 | 4 | 60 | 265 | 20 | 233 | 1.37e-36 | 140 |
| Msa0663320 | AT1G54300.1 | 42.500 | 160 | 82 | 4 | 115 | 265 | 2 | 160 | 3.24e-29 | 117 |
Find 129 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGTTGAAATCGAATT+TGG | 0.132685 | 4_4:-2095843 | None:intergenic |
| AACCTCTTTATTGTAGTCTT+TGG | 0.211501 | 4_4:+2099574 | Msa0663320:three_prime_UTR |
| TAAGAGTAAAATGTTTGATT+TGG | 0.223076 | 4_4:+2099358 | Msa0663320:CDS |
| ACCCTTCTGATCTTTCTTCT+TGG | 0.228703 | 4_4:-2096249 | None:intergenic |
| CTGAGAAACTTATCAGATTC+AGG | 0.259989 | 4_4:-2098993 | None:intergenic |
| CAGAAGTGAACAAAATCTTA+TGG | 0.288359 | 4_4:+2098034 | Msa0663320:CDS |
| CCCATGCAATCAAAGGTTTC+AGG | 0.301138 | 4_4:+2098961 | Msa0663320:CDS |
| AAGAGTAAAATGTTTGATTT+GGG | 0.305973 | 4_4:+2099359 | Msa0663320:CDS |
| TGTTTGGAACAGTGTGATTC+AGG | 0.311820 | 4_4:+2096104 | Msa0663320:intron |
| CAATGCCCTCAAGGTCTGTT+AGG | 0.323271 | 4_4:+2097795 | Msa0663320:CDS |
| TTCGATGTCGATGGATGATT+TGG | 0.335720 | 4_4:+2099052 | Msa0663320:CDS |
| TTCTTCACAATCATCAACTA+TGG | 0.345038 | 4_4:+2095721 | Msa0663320:exon |
| GGACTGCATGATGTGGAATC+AGG | 0.352036 | 4_4:+2097987 | Msa0663320:CDS |
| AGCTAGGTGAGGTAATTTCT+TGG | 0.354560 | 4_4:-2098079 | None:intergenic |
| AGAAGAAGTGAAGGGAAAGC+TGG | 0.361169 | 4_4:+2097957 | Msa0663320:CDS |
| CATTGAATTGAGTGATGGTT+TGG | 0.363177 | 4_4:+2097932 | Msa0663320:CDS |
| ACAATAACTTCCAATGTTCC+TGG | 0.363801 | 4_4:-2096863 | None:intergenic |
| TCCGATTTCATACAATCCTT+TGG | 0.368995 | 4_4:+2096139 | Msa0663320:CDS |
| TTGCGAAGCATAAGCTTGTA+TGG | 0.377568 | 4_4:+2096753 | Msa0663320:CDS |
| GTCTAGATATGAAGGAGATT+TGG | 0.382647 | 4_4:+2096715 | Msa0663320:CDS |
| TGCCACAAGGTATGCTTCCT+TGG | 0.393612 | 4_4:-2097445 | None:intergenic |
| TCCTGAAACCTTTGATTGCA+TGG | 0.393638 | 4_4:-2098962 | None:intergenic |
| TCCAAAGGATTGTATGAAAT+CGG | 0.396620 | 4_4:-2096140 | None:intergenic |
| TTTCTGAAGAAGGCAGTATA+AGG | 0.405521 | 4_4:-2099237 | None:intergenic |
| CAATCAACAACAGACTTTAC+TGG | 0.408931 | 4_4:+2097466 | Msa0663320:CDS |
| GGAGAATCCAACACAAATTC+CGG | 0.411628 | 4_4:-2097876 | None:intergenic |
| CCACATCGGACACTGCATTT+CGG | 0.412120 | 4_4:+2099079 | Msa0663320:CDS |
| GCAGTTCCAGTCTCAAAGTA+TGG | 0.416139 | 4_4:-2097897 | None:intergenic |
| CAAGATGATGATGATGCTTC+TGG | 0.418720 | 4_4:+2099389 | Msa0663320:CDS |
| TCAGAGTTGAAATCGAATTT+GGG | 0.419622 | 4_4:-2095842 | None:intergenic |
| CTATCAGAATCCTCGGACAT+AGG | 0.423015 | 4_4:-2099509 | None:intergenic |
| CCTGAAACCTTTGATTGCAT+GGG | 0.423667 | 4_4:-2098961 | None:intergenic |
| GTTGGTTACTTAAACTCAAT+GGG | 0.426099 | 4_4:+2099621 | Msa0663320:three_prime_UTR |
| AGTTGGTTACTTAAACTCAA+TGG | 0.430062 | 4_4:+2099620 | Msa0663320:three_prime_UTR |
| CCAATCTTCAAAACAGTAGC+AGG | 0.430225 | 4_4:-2096329 | None:intergenic |
| TGTGATTCAGGTGATGATTC+TGG | 0.430308 | 4_4:+2096116 | Msa0663320:CDS |
| CTTGTATGGGAAGTTCTTGA+TGG | 0.433138 | 4_4:+2096767 | Msa0663320:CDS |
| AATGTTCCTGGAGCATCCTC+AGG | 0.433779 | 4_4:-2096851 | None:intergenic |
| CCAACACAAATTCCGGTTGT+TGG | 0.433853 | 4_4:-2097869 | None:intergenic |
| GGTAGCCAGCAGCAAGGAAA+TGG | 0.434094 | 4_4:+2099410 | Msa0663320:CDS |
| AAGGTATGCTTCCTTGGTTG+TGG | 0.434236 | 4_4:-2097439 | None:intergenic |
| AGCTCTGTCATTAGTGAAGC+TGG | 0.450625 | 4_4:-2099123 | None:intergenic |
| AGAAGTGAACAAAATCTTAT+GGG | 0.452591 | 4_4:+2098035 | Msa0663320:CDS |
| CAACTTTCTGAGCCAACAAC+CGG | 0.458040 | 4_4:+2097857 | Msa0663320:CDS |
| CTGAAACCTTTGATTGCATG+GGG | 0.466395 | 4_4:-2098960 | None:intergenic |
| GATTCTCCATACTTTGAGAC+TGG | 0.468589 | 4_4:+2097891 | Msa0663320:CDS |
| TTATTTATACCTATGTATGC+TGG | 0.472570 | 4_4:-2097497 | None:intergenic |
| GAAGAAGTGAAGGGAAAGCT+GGG | 0.473769 | 4_4:+2097958 | Msa0663320:CDS |
| CACTTTGTGCAATGCCCTCA+AGG | 0.479139 | 4_4:+2097786 | Msa0663320:CDS |
| ACAGACCATTTCCTTGCTGC+TGG | 0.483280 | 4_4:-2099415 | None:intergenic |
| CACTAATGACAGAGCTGTGT+TGG | 0.483298 | 4_4:+2099130 | Msa0663320:CDS |
| GAAGAAGAGTCCTTCACTGT+TGG | 0.484620 | 4_4:+2096190 | Msa0663320:CDS |
| AATTCCATGGTCTGATATCA+TGG | 0.485625 | 4_4:+2096811 | Msa0663320:CDS |
| TTTCAACTCTGATTCTCCTA+AGG | 0.489774 | 4_4:+2095853 | Msa0663320:CDS |
| CCAACAACCGGAATTTGTGT+TGG | 0.491090 | 4_4:+2097869 | Msa0663320:CDS |
| TTGAGTCAGATTAAGTTGCC+TGG | 0.498526 | 4_4:+2099020 | Msa0663320:CDS |
| AGACGCAAACCAAGTGGACT+TGG | 0.503986 | 4_4:-2096167 | None:intergenic |
| TCTTCACCCTTCGATGTCGA+TGG | 0.504190 | 4_4:+2099043 | Msa0663320:CDS |
| GAAATGGAAAATATCACTGT+TGG | 0.504344 | 4_4:-2099672 | None:intergenic |
| CAGTATAAGTCTAGATATGA+AGG | 0.517526 | 4_4:+2096707 | Msa0663320:intron |
| ATTTGCTTCTGAATCTTCCA+AGG | 0.519721 | 4_4:+2099459 | Msa0663320:CDS |
| CACTCAATTCAATGTGGTCA+TGG | 0.523533 | 4_4:-2097923 | None:intergenic |
| TGTGGCAGAGAAGCAATCCT+TGG | 0.523882 | 4_4:-2099476 | None:intergenic |
| GAAATTACCTCACCTAGCTC+AGG | 0.524612 | 4_4:+2098083 | Msa0663320:CDS |
| TGAGGATGCTCCAGGAACAT+TGG | 0.526671 | 4_4:+2096853 | Msa0663320:CDS |
| GTCTGATATCATGGCTCTCA+AGG | 0.526777 | 4_4:+2096820 | Msa0663320:CDS |
| TAATGACAGAGCTGTGTTGG+AGG | 0.526990 | 4_4:+2099133 | Msa0663320:CDS |
| CATGATGTGGAATCAGGGTC+TGG | 0.530089 | 4_4:+2097993 | Msa0663320:CDS |
| AGAATAAGATTGAAATTCCA+TGG | 0.535046 | 4_4:+2096798 | Msa0663320:CDS |
| TTGGATGAACCAAGTCCACT+TGG | 0.535980 | 4_4:+2096158 | Msa0663320:CDS |
| TTCTGTTCATCATCAGAGAC+AGG | 0.536856 | 4_4:-2099194 | None:intergenic |
| GACATCGAAGGGTGAAGACC+AGG | 0.537780 | 4_4:-2099038 | None:intergenic |
| TGCCAAAGACTACAATAAAG+AGG | 0.539321 | 4_4:-2099576 | None:intergenic |
| TGCTGCTGATAGCAAGCTCA+AGG | 0.539666 | 4_4:+2096295 | Msa0663320:CDS |
| TTGGCTCAGAAAGTTGAGAC+GGG | 0.539829 | 4_4:-2097850 | None:intergenic |
| CAGGAGGGTCTTTCTGAAGA+AGG | 0.541302 | 4_4:-2099247 | None:intergenic |
| CTGTCTAGGAAAGAATCAGC+TGG | 0.542082 | 4_4:+2099434 | Msa0663320:CDS |
| AACTACCCTGAGGATGCTCC+AGG | 0.542158 | 4_4:+2096845 | Msa0663320:CDS |
| GCCTCCCTAACAGACCTTGA+GGG | 0.542641 | 4_4:-2097800 | None:intergenic |
| ACACTGCATTTCGGAACAGA+TGG | 0.543363 | 4_4:+2099088 | Msa0663320:CDS |
| AATGCCCTCAAGGTCTGTTA+GGG | 0.546969 | 4_4:+2097796 | Msa0663320:CDS |
| TGTATTTGTTGTAGCTGGCA+AGG | 0.547557 | 4_4:+2097389 | Msa0663320:intron |
| TGCGAAGCATAAGCTTGTAT+GGG | 0.558386 | 4_4:+2096754 | Msa0663320:CDS |
| GCTGGACATCGTAGAAAAGC+AGG | 0.559213 | 4_4:+2095613 | None:intergenic |
| TTCCAAGAAGAAAGATCAGA+AGG | 0.560722 | 4_4:+2096247 | Msa0663320:CDS |
| GCCCTCAAGGTCTGTTAGGG+AGG | 0.562789 | 4_4:+2097799 | Msa0663320:CDS |
| GGTTTGGATAGAAGAAGTGA+AGG | 0.566531 | 4_4:+2097948 | Msa0663320:CDS |
| AACATGACTATCAGAATCCT+CGG | 0.577952 | 4_4:-2099516 | None:intergenic |
| CACTGCATTTCGGAACAGAT+GGG | 0.578013 | 4_4:+2099089 | Msa0663320:CDS |
| TAGATATGAAGGAGATTTGG+TGG | 0.584423 | 4_4:+2096718 | Msa0663320:CDS |
| TGCCTCCCTAACAGACCTTG+AGG | 0.584503 | 4_4:-2097801 | None:intergenic |
| GTGGACAAGCCAGCATACAT+AGG | 0.584639 | 4_4:+2097488 | Msa0663320:CDS |
| AGCAAGGAAATGGTCTGTCT+AGG | 0.585074 | 4_4:+2099420 | Msa0663320:CDS |
| AAATCATCCATCGACATCGA+AGG | 0.585590 | 4_4:-2099050 | None:intergenic |
| AGTGGACTTGGTTCATCCAA+AGG | 0.586408 | 4_4:-2096155 | None:intergenic |
| CCATAGGAATTACCTGAGCT+AGG | 0.591916 | 4_4:-2098095 | None:intergenic |
| TTCTTCAGACGCAAACCAAG+TGG | 0.595315 | 4_4:-2096173 | None:intergenic |
| ATCAAAGGTTTCAGGAGCAG+AGG | 0.596879 | 4_4:+2098969 | Msa0663320:CDS |
| GACTGCATGATGTGGAATCA+GGG | 0.597635 | 4_4:+2097988 | Msa0663320:CDS |
| GACATAGGAAACAGAAAATG+TGG | 0.600386 | 4_4:-2099494 | None:intergenic |
| TGAATCAAATCCAACAGTGA+AGG | 0.602378 | 4_4:-2096200 | None:intergenic |
| GTTGGCTCAGAAAGTTGAGA+CGG | 0.604139 | 4_4:-2097851 | None:intergenic |
| GAAGATAGAAAAGTTGATGA+GGG | 0.606665 | 4_4:+2099320 | Msa0663320:CDS |
| TTTGAAGATTGGTACTTGGG+AGG | 0.609526 | 4_4:+2096340 | Msa0663320:CDS |
| GACCACATTGAATTGAGTGA+TGG | 0.611625 | 4_4:+2097927 | Msa0663320:CDS |
| TGAAGATAGAAAAGTTGATG+AGG | 0.612436 | 4_4:+2099319 | Msa0663320:CDS |
| AATCATCCATCGACATCGAA+GGG | 0.616354 | 4_4:-2099049 | None:intergenic |
| GTCTGTTGTTGATTGCCACA+AGG | 0.622596 | 4_4:-2097458 | None:intergenic |
| CTTGAGGGCATTGCACAAAG+TGG | 0.635048 | 4_4:-2097785 | None:intergenic |
| TCAACAACAGACTTTACTGG+TGG | 0.640598 | 4_4:+2097469 | Msa0663320:CDS |
| CAATCTTCAAAACAGTAGCA+GGG | 0.640997 | 4_4:-2096328 | None:intergenic |
| ATGTTCCTGGAGCATCCTCA+GGG | 0.646838 | 4_4:-2096850 | None:intergenic |
| GTTTGGATAGAAGAAGTGAA+GGG | 0.651890 | 4_4:+2097949 | Msa0663320:CDS |
| TCCAAGAAGAAAGATCAGAA+GGG | 0.651999 | 4_4:+2096248 | Msa0663320:CDS |
| TGTTCATCATCAGAGACAGG+TGG | 0.655949 | 4_4:-2099191 | None:intergenic |
| ATTTGTTGTAGCTGGCAAGG+AGG | 0.658694 | 4_4:+2097392 | Msa0663320:intron |
| GGGAGATCAATCCACAACCA+AGG | 0.673080 | 4_4:+2097428 | Msa0663320:CDS |
| GCTTCTGGTAGCCAGCAGCA+AGG | 0.673116 | 4_4:+2099404 | Msa0663320:CDS |
| ATGAACAGAATGTCATGACA+AGG | 0.678824 | 4_4:+2099207 | Msa0663320:CDS |
| GGAATTACCTGAGCTAGGTG+AGG | 0.680636 | 4_4:-2098090 | None:intergenic |
| TGGCTCAGAAAGTTGAGACG+GGG | 0.681167 | 4_4:-2097849 | None:intergenic |
| GATGATTTGGTTAACCACAT+CGG | 0.685792 | 4_4:+2099065 | Msa0663320:CDS |
| AGAGCCATGATATCAGACCA+TGG | 0.692062 | 4_4:-2096815 | None:intergenic |
| TGAAACCTTTGATTGCATGG+GGG | 0.696180 | 4_4:-2098959 | None:intergenic |
| CCGAAATGCAGTGTCCGATG+TGG | 0.700782 | 4_4:-2099079 | None:intergenic |
| AACCATCACTCAATTCAATG+TGG | 0.718712 | 4_4:-2097929 | None:intergenic |
| TCTCAAGGCAAACTACCCTG+AGG | 0.745164 | 4_4:+2096835 | Msa0663320:CDS |
| TGAACAGAATGTCATGACAA+GGG | 0.758366 | 4_4:+2099208 | Msa0663320:CDS |
| AACCAAGGAAGCATACCTTG+TGG | 0.758682 | 4_4:+2097443 | Msa0663320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGTTAATTTCATAT+TGG | + | chr4_4:2096000-2096019 | Msa0663320:intron | 10.0% |
| !!! | TTTTTTGTTAATTTCATATT+GGG | + | chr4_4:2096001-2096020 | Msa0663320:intron | 10.0% |
| !!! | TTTTATACATTGTTTTAATT+TGG | + | chr4_4:2098125-2098144 | Msa0663320:intron | 10.0% |
| !!! | TTTTAATTTCAAATTTAACA+TGG | + | chr4_4:2098238-2098257 | Msa0663320:intron | 10.0% |
| !! | TAATCATTATCATTATATAA+TGG | + | chr4_4:2098797-2098816 | Msa0663320:intron | 10.0% |
| !! | ATAAGTTATTTATCAAAACA+GGG | - | chr4_4:2096432-2096451 | None:intergenic | 15.0% |
| !! | AATAAGTTATTTATCAAAAC+AGG | - | chr4_4:2096433-2096452 | None:intergenic | 15.0% |
| !!! | TTTTATTGCTTAATAGATTT+TGG | + | chr4_4:2097096-2097115 | Msa0663320:intron | 15.0% |
| !!! | TTTTATTGCTTAATAGATTT+TGG | + | chr4_4:2097096-2097115 | Msa0663320:intron | 15.0% |
| !! | TGTATAAAAAAAATATCCAT+AGG | - | chr4_4:2098114-2098133 | None:intergenic | 15.0% |
| !! | AGAGGAATAATATTATAAAA+TGG | - | chr4_4:2098741-2098760 | None:intergenic | 15.0% |
| !!! | ATATGGAATTATATCATTTT+CGG | - | chr4_4:2098915-2098934 | None:intergenic | 15.0% |
| !!! | GTTTAATTTTCAGTTTGTTA+TGG | + | chr4_4:2096026-2096045 | Msa0663320:intron | 20.0% |
| !!! | ATTGTGTTTTTTTGTTTGTT+TGG | + | chr4_4:2096088-2096107 | Msa0663320:intron | 20.0% |
| !! | TTTGTTTGTAGAAATAATGA+AGG | + | chr4_4:2096406-2096425 | Msa0663320:intron | 20.0% |
| !!! | TTTTAATCATTTATGTGTCA+TGG | + | chr4_4:2096941-2096960 | Msa0663320:intron | 20.0% |
| !!! | TTTTATTGCTTACTAGATTT+TGG | + | chr4_4:2096988-2097007 | Msa0663320:intron | 20.0% |
| !!! | TTTTATTGCTCAATAGATTT+TGG | + | chr4_4:2097042-2097061 | Msa0663320:intron | 20.0% |
| !!! | TTAGTTGTTTTCAATTCATT+TGG | + | chr4_4:2097700-2097719 | Msa0663320:intron | 20.0% |
| !!! | ATTCTGTATTTTGTTGTTAT+AGG | + | chr4_4:2097760-2097779 | Msa0663320:intron | 20.0% |
| !! | TATCTCAAGAAATACAAAAA+AGG | - | chr4_4:2098178-2098197 | None:intergenic | 20.0% |
| !!! | ATCTTTTAAATTTTCCTGAA+TGG | + | chr4_4:2098274-2098293 | Msa0663320:intron | 20.0% |
| !! | AATTTAATCATTTGATACTC+TGG | - | chr4_4:2098325-2098344 | None:intergenic | 20.0% |
| !!! | AGAGTATCAAATGATTAAAT+TGG | + | chr4_4:2098324-2098343 | Msa0663320:intron | 20.0% |
| !! | TAATTTATTGTGGATATCTA+CGG | + | chr4_4:2098622-2098641 | Msa0663320:intron | 20.0% |
| !!! | TGTTGATTATGTTTTTGTTA+TGG | + | chr4_4:2098668-2098687 | Msa0663320:intron | 20.0% |
| !!! | TATGGAATTATATCATTTTC+GGG | - | chr4_4:2098914-2098933 | None:intergenic | 20.0% |
| !! | TAAGAGTAAAATGTTTGATT+TGG | + | chr4_4:2099358-2099377 | Msa0663320:CDS | 20.0% |
| !!! | AAGAGTAAAATGTTTGATTT+GGG | + | chr4_4:2099359-2099378 | Msa0663320:CDS | 20.0% |
| !!! | TTTGTTGTCTTTTTTATAAC+TGG | - | chr4_4:2099697-2099716 | None:intergenic | 20.0% |
| ! | TCACTTCAAAAAAGTCAAAT+TGG | + | chr4_4:2095775-2095794 | Msa0663320:CDS | 25.0% |
| !!! | ATGAAATTAATGATGGGTTT+TGG | - | chr4_4:2095911-2095930 | None:intergenic | 25.0% |
| ! | TTTGTTAATTTCATATTGGG+TGG | + | chr4_4:2096004-2096023 | Msa0663320:intron | 25.0% |
| !! | GTTGTCTTCATAAGTTATTT+TGG | + | chr4_4:2096551-2096570 | Msa0663320:intron | 25.0% |
| !!! | GATGATGTGATTGTTATTTA+TGG | + | chr4_4:2096679-2096698 | Msa0663320:intron | 25.0% |
| ! | AGAATAAGATTGAAATTCCA+TGG | + | chr4_4:2096798-2096817 | Msa0663320:CDS | 25.0% |
| ! | GTGTTAGATATATGCTATAA+TGG | + | chr4_4:2097204-2097223 | Msa0663320:intron | 25.0% |
| ! | AAATAGCATATCGCAAAATA+TGG | - | chr4_4:2097261-2097280 | None:intergenic | 25.0% |
| ! | TTATTTATACCTATGTATGC+TGG | - | chr4_4:2097500-2097519 | None:intergenic | 25.0% |
| ! | AGAAGTGAACAAAATCTTAT+GGG | + | chr4_4:2098035-2098054 | Msa0663320:CDS | 25.0% |
| !!! | ATTGTTTTAATTTGGTCTGA+TGG | + | chr4_4:2098133-2098152 | Msa0663320:intron | 25.0% |
| ! | ATACAAAAAAGGCTATAAAC+AGG | - | chr4_4:2098167-2098186 | None:intergenic | 25.0% |
| !! | TTTAAATTTTCCTGAATGGT+CGG | + | chr4_4:2098278-2098297 | Msa0663320:intron | 25.0% |
| ! | AATGCATTAAGATCTATTGA+GGG | - | chr4_4:2098566-2098585 | None:intergenic | 25.0% |
| ! | AATTTATTGTGGATATCTAC+GGG | + | chr4_4:2098623-2098642 | Msa0663320:intron | 25.0% |
| ! | ATAATGATTAAAGACAGTAG+CGG | - | chr4_4:2098787-2098806 | None:intergenic | 25.0% |
| ! | CTGCAGATGATAATAAAATA+TGG | - | chr4_4:2098932-2098951 | None:intergenic | 25.0% |
| !!! | ATTTTGAACCTGTTTTTCTT+CGG | - | chr4_4:2099276-2099295 | None:intergenic | 25.0% |
| !!! | GTCTTTTTTATAACTGGAAA+TGG | - | chr4_4:2099691-2099710 | None:intergenic | 25.0% |
| ! | AAAAATATGTTCGTGTGTTT+GGG | + | chr4_4:2099714-2099733 | Msa0663320:three_prime_UTR | 25.0% |
| AAAGCAGGAGAAAAACAATT+TGG | + | chr4_4:2095628-2095647 | Msa0663320:five_prime_UTR | 30.0% | |
| TTCTTCACAATCATCAACTA+TGG | + | chr4_4:2095721-2095740 | Msa0663320:exon | 30.0% | |
| TCAGAGTTGAAATCGAATTT+GGG | - | chr4_4:2095845-2095864 | None:intergenic | 30.0% | |
| ATCAGAGTTGAAATCGAATT+TGG | - | chr4_4:2095846-2095865 | None:intergenic | 30.0% | |
| TGAAAGAAAAAGAGAACCTT+AGG | - | chr4_4:2095872-2095891 | None:intergenic | 30.0% | |
| ACCCATCATTAATTTCATTC+TGG | + | chr4_4:2095913-2095932 | Msa0663320:intron | 30.0% | |
| CCCAGAATGAAATTAATGAT+GGG | - | chr4_4:2095917-2095936 | None:intergenic | 30.0% | |
| CCCATCATTAATTTCATTCT+GGG | + | chr4_4:2095914-2095933 | Msa0663320:intron | 30.0% | |
| ACCCAGAATGAAATTAATGA+TGG | - | chr4_4:2095918-2095937 | None:intergenic | 30.0% | |
| TCCAAAGGATTGTATGAAAT+CGG | - | chr4_4:2096143-2096162 | None:intergenic | 30.0% | |
| !!! | TGTTTTGAAGATTGGTACTT+GGG | + | chr4_4:2096337-2096356 | Msa0663320:CDS | 30.0% |
| CAGTATAAGTCTAGATATGA+AGG | + | chr4_4:2096707-2096726 | Msa0663320:intron | 30.0% | |
| ATTGACAACATATGCTAAGT+TGG | + | chr4_4:2097364-2097383 | Msa0663320:intron | 30.0% | |
| !! | CAATTCATTTGGTAATGAAG+TGG | + | chr4_4:2097711-2097730 | Msa0663320:intron | 30.0% |
| AATCACATCATTAAGACATC+AGG | - | chr4_4:2097743-2097762 | None:intergenic | 30.0% | |
| ! | CATAAGATTTTGTTCACTTC+TGG | - | chr4_4:2098036-2098055 | None:intergenic | 30.0% |
| CAGAAGTGAACAAAATCTTA+TGG | + | chr4_4:2098034-2098053 | Msa0663320:CDS | 30.0% | |
| GATTAAATTGGCAGTATGTT+TGG | + | chr4_4:2098336-2098355 | Msa0663320:intron | 30.0% | |
| TAGATTGTACCTTGACTAAA+TGG | - | chr4_4:2098450-2098469 | None:intergenic | 30.0% | |
| TTTCTGATTAATCTGCAATC+CGG | + | chr4_4:2098517-2098536 | Msa0663320:intron | 30.0% | |
| ATGCATTAAGATCTATTGAG+GGG | - | chr4_4:2098565-2098584 | None:intergenic | 30.0% | |
| GAATGCATTAAGATCTATTG+AGG | - | chr4_4:2098567-2098586 | None:intergenic | 30.0% | |
| AATATTATTCCTCTGTTCTG+AGG | + | chr4_4:2098747-2098766 | Msa0663320:intron | 30.0% | |
| TAATGATTAAAGACAGTAGC+GGG | - | chr4_4:2098786-2098805 | None:intergenic | 30.0% | |
| ! | CATCACATGTGTCTAAAATA+TGG | + | chr4_4:2098841-2098860 | Msa0663320:intron | 30.0% |
| !! | TTTTGAACCTGTTTTTCTTC+GGG | - | chr4_4:2099275-2099294 | None:intergenic | 30.0% |
| GAAGAAAAACAGGTTCAAAA+TGG | + | chr4_4:2099275-2099294 | Msa0663320:CDS | 30.0% | |
| !! | TGAAGATAGAAAAGTTGATG+AGG | + | chr4_4:2099319-2099338 | Msa0663320:CDS | 30.0% |
| !! | GAAGATAGAAAAGTTGATGA+GGG | + | chr4_4:2099320-2099339 | Msa0663320:CDS | 30.0% |
| AACCTCTTTATTGTAGTCTT+TGG | + | chr4_4:2099574-2099593 | Msa0663320:three_prime_UTR | 30.0% | |
| AGTTGGTTACTTAAACTCAA+TGG | + | chr4_4:2099620-2099639 | Msa0663320:three_prime_UTR | 30.0% | |
| GTTGGTTACTTAAACTCAAT+GGG | + | chr4_4:2099621-2099640 | Msa0663320:three_prime_UTR | 30.0% | |
| GAAATGGAAAATATCACTGT+TGG | - | chr4_4:2099675-2099694 | None:intergenic | 30.0% | |
| CAAAAATATGTTCGTGTGTT+TGG | + | chr4_4:2099713-2099732 | Msa0663320:three_prime_UTR | 30.0% | |
| TTTCAACTCTGATTCTCCTA+AGG | + | chr4_4:2095853-2095872 | Msa0663320:CDS | 35.0% | |
| TCCGATTTCATACAATCCTT+TGG | + | chr4_4:2096139-2096158 | Msa0663320:CDS | 35.0% | |
| TGAATCAAATCCAACAGTGA+AGG | - | chr4_4:2096203-2096222 | None:intergenic | 35.0% | |
| TTCCAAGAAGAAAGATCAGA+AGG | + | chr4_4:2096247-2096266 | Msa0663320:CDS | 35.0% | |
| TCCAAGAAGAAAGATCAGAA+GGG | + | chr4_4:2096248-2096267 | Msa0663320:CDS | 35.0% | |
| CAATCTTCAAAACAGTAGCA+GGG | - | chr4_4:2096331-2096350 | None:intergenic | 35.0% | |
| !!! | CTGTTTTGAAGATTGGTACT+TGG | + | chr4_4:2096336-2096355 | Msa0663320:CDS | 35.0% |
| CACCATCTCAAAACTTATGA+TGG | + | chr4_4:2096645-2096664 | Msa0663320:intron | 35.0% | |
| !!! | CACCATCATAAGTTTTGAGA+TGG | - | chr4_4:2096650-2096669 | None:intergenic | 35.0% |
| GTCTAGATATGAAGGAGATT+TGG | + | chr4_4:2096715-2096734 | Msa0663320:CDS | 35.0% | |
| TAGATATGAAGGAGATTTGG+TGG | + | chr4_4:2096718-2096737 | Msa0663320:CDS | 35.0% | |
| AATTCCATGGTCTGATATCA+TGG | + | chr4_4:2096811-2096830 | Msa0663320:CDS | 35.0% | |
| ACAATAACTTCCAATGTTCC+TGG | - | chr4_4:2096866-2096885 | None:intergenic | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | + | chr4_4:2097006-2097025 | Msa0663320:intron | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | + | chr4_4:2097006-2097025 | Msa0663320:intron | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | + | chr4_4:2097006-2097025 | Msa0663320:intron | 35.0% | |
| TTGTCAAATAGCTTCTGTAG+CGG | + | chr4_4:2097291-2097310 | Msa0663320:intron | 35.0% | |
| ATTGATCTCCCTGAAAAACA+GGG | - | chr4_4:2097419-2097438 | None:intergenic | 35.0% | |
| CAATCAACAACAGACTTTAC+TGG | + | chr4_4:2097466-2097485 | Msa0663320:CDS | 35.0% | |
| GAATGGCGGTAAAATCAAAA+CGG | + | chr4_4:2097560-2097579 | Msa0663320:intron | 35.0% | |
| AAAACAAATCTGTGCACTCT+TGG | - | chr4_4:2097677-2097696 | None:intergenic | 35.0% | |
| AACCATCACTCAATTCAATG+TGG | - | chr4_4:2097932-2097951 | None:intergenic | 35.0% | |
| CATTGAATTGAGTGATGGTT+TGG | + | chr4_4:2097932-2097951 | Msa0663320:CDS | 35.0% | |
| GTTTGGATAGAAGAAGTGAA+GGG | + | chr4_4:2097949-2097968 | Msa0663320:CDS | 35.0% | |
| ! | AAGATTTTGTTCACTTCTGG+AGG | - | chr4_4:2098033-2098052 | None:intergenic | 35.0% |
| TTGACTAAATGGTCGAGATT+TGG | - | chr4_4:2098439-2098458 | None:intergenic | 35.0% | |
| AAATCTCGACCATTTAGTCA+AGG | + | chr4_4:2098438-2098457 | Msa0663320:intron | 35.0% | |
| AAGGTACAATCTACATCCAA+TGG | + | chr4_4:2098457-2098476 | Msa0663320:intron | 35.0% | |
| TTCTGATTAATCTGCAATCC+GGG | + | chr4_4:2098518-2098537 | Msa0663320:intron | 35.0% | |
| AATCAAAAACCTCAGAACAG+AGG | - | chr4_4:2098759-2098778 | None:intergenic | 35.0% | |
| CGGGTGATAATAAAATCACA+AGG | - | chr4_4:2098895-2098914 | None:intergenic | 35.0% | |
| CTGAGAAACTTATCAGATTC+AGG | - | chr4_4:2098996-2099015 | None:intergenic | 35.0% | |
| !! | GATGATTTGGTTAACCACAT+CGG | + | chr4_4:2099065-2099084 | Msa0663320:CDS | 35.0% |
| ! | TTAGTGAAGCTGGAATTTTC+AGG | - | chr4_4:2099116-2099135 | None:intergenic | 35.0% |
| ATGAACAGAATGTCATGACA+AGG | + | chr4_4:2099207-2099226 | Msa0663320:CDS | 35.0% | |
| TGAACAGAATGTCATGACAA+GGG | + | chr4_4:2099208-2099227 | Msa0663320:CDS | 35.0% | |
| ! | TTTCTGAAGAAGGCAGTATA+AGG | - | chr4_4:2099240-2099259 | None:intergenic | 35.0% |
| ATTTGCTTCTGAATCTTCCA+AGG | + | chr4_4:2099459-2099478 | Msa0663320:CDS | 35.0% | |
| GACATAGGAAACAGAAAATG+TGG | - | chr4_4:2099497-2099516 | None:intergenic | 35.0% | |
| AACATGACTATCAGAATCCT+CGG | - | chr4_4:2099519-2099538 | None:intergenic | 35.0% | |
| TGCCAAAGACTACAATAAAG+AGG | - | chr4_4:2099579-2099598 | None:intergenic | 35.0% | |
| ! | GTGCATATTTTATGTGCAGT+TGG | + | chr4_4:2099603-2099622 | Msa0663320:three_prime_UTR | 35.0% |
| ! | TGTTTGGAACAGTGTGATTC+AGG | + | chr4_4:2096104-2096123 | Msa0663320:intron | 40.0% |
| TGTGATTCAGGTGATGATTC+TGG | + | chr4_4:2096116-2096135 | Msa0663320:CDS | 40.0% | |
| ACCCTTCTGATCTTTCTTCT+TGG | - | chr4_4:2096252-2096271 | None:intergenic | 40.0% | |
| CCAATCTTCAAAACAGTAGC+AGG | - | chr4_4:2096332-2096351 | None:intergenic | 40.0% | |
| !!! | CCTGCTACTGTTTTGAAGAT+TGG | + | chr4_4:2096329-2096348 | Msa0663320:CDS | 40.0% |
| TTTGAAGATTGGTACTTGGG+AGG | + | chr4_4:2096340-2096359 | Msa0663320:CDS | 40.0% | |
| TTGCGAAGCATAAGCTTGTA+TGG | + | chr4_4:2096753-2096772 | Msa0663320:CDS | 40.0% | |
| TGCGAAGCATAAGCTTGTAT+GGG | + | chr4_4:2096754-2096773 | Msa0663320:CDS | 40.0% | |
| CTTGTATGGGAAGTTCTTGA+TGG | + | chr4_4:2096767-2096786 | Msa0663320:CDS | 40.0% | |
| TTTGGACCAGTTATGTGTCA+TGG | + | chr4_4:2097168-2097187 | Msa0663320:intron | 40.0% | |
| ATGAGTCCATGACACATAAC+TGG | - | chr4_4:2097015-2097034 | None:intergenic | 40.0% | |
| !! | TGGTGTGTATTTGTTGTAGC+TGG | + | chr4_4:2097384-2097403 | Msa0663320:intron | 40.0% |
| !! | TGTATTTGTTGTAGCTGGCA+AGG | + | chr4_4:2097389-2097408 | Msa0663320:intron | 40.0% |
| TTGATCTCCCTGAAAAACAG+GGG | - | chr4_4:2097418-2097437 | None:intergenic | 40.0% | |
| GATTGATCTCCCTGAAAAAC+AGG | - | chr4_4:2097420-2097439 | None:intergenic | 40.0% | |
| TCAACAACAGACTTTACTGG+TGG | + | chr4_4:2097469-2097488 | Msa0663320:CDS | 40.0% | |
| CAATCATGCACTTGAGATGA+CGG | - | chr4_4:2097540-2097559 | None:intergenic | 40.0% | |
| TCTCAAGTGCATGATTGGAA+TGG | + | chr4_4:2097543-2097562 | Msa0663320:intron | 40.0% | |
| AAATCTGTGCACTCTTGGAT+TGG | - | chr4_4:2097672-2097691 | None:intergenic | 40.0% | |
| GGAGAATCCAACACAAATTC+CGG | - | chr4_4:2097879-2097898 | None:intergenic | 40.0% | |
| !! | GATTCTCCATACTTTGAGAC+TGG | + | chr4_4:2097891-2097910 | Msa0663320:CDS | 40.0% |
| CACTCAATTCAATGTGGTCA+TGG | - | chr4_4:2097926-2097945 | None:intergenic | 40.0% | |
| GACCACATTGAATTGAGTGA+TGG | + | chr4_4:2097927-2097946 | Msa0663320:CDS | 40.0% | |
| GGTTTGGATAGAAGAAGTGA+AGG | + | chr4_4:2097948-2097967 | Msa0663320:CDS | 40.0% | |
| !! | GATTTTTGGACTGCATGATG+TGG | + | chr4_4:2097980-2097999 | Msa0663320:CDS | 40.0% |
| AGCTAGGTGAGGTAATTTCT+TGG | - | chr4_4:2098082-2098101 | None:intergenic | 40.0% | |
| TGGCAGTATGTTTGGTTGTT+TGG | + | chr4_4:2098344-2098363 | Msa0663320:intron | 40.0% | |
| TTTAGATCAACCCTCAATGC+CGG | + | chr4_4:2098385-2098404 | Msa0663320:intron | 40.0% | |
| TGCATGCAAATCTCAACCAT+TGG | - | chr4_4:2098476-2098495 | None:intergenic | 40.0% | |
| ATTTGCATGCACAGGTTCAA+CGG | + | chr4_4:2098485-2098504 | Msa0663320:intron | 40.0% | |
| ATAATCAACACTAGTGCAGC+TGG | - | chr4_4:2098658-2098677 | None:intergenic | 40.0% | |
| ATTAACCCCCATGCAATCAA+AGG | + | chr4_4:2098954-2098973 | Msa0663320:CDS | 40.0% | |
| TGAAACCTTTGATTGCATGG+GGG | - | chr4_4:2098962-2098981 | None:intergenic | 40.0% | |
| CTGAAACCTTTGATTGCATG+GGG | - | chr4_4:2098963-2098982 | None:intergenic | 40.0% | |
| CCTGAAACCTTTGATTGCAT+GGG | - | chr4_4:2098964-2098983 | None:intergenic | 40.0% | |
| TCCTGAAACCTTTGATTGCA+TGG | - | chr4_4:2098965-2098984 | None:intergenic | 40.0% | |
| ! | TTGAGTCAGATTAAGTTGCC+TGG | + | chr4_4:2099020-2099039 | Msa0663320:CDS | 40.0% |
| AATCATCCATCGACATCGAA+GGG | - | chr4_4:2099052-2099071 | None:intergenic | 40.0% | |
| AAATCATCCATCGACATCGA+AGG | - | chr4_4:2099053-2099072 | None:intergenic | 40.0% | |
| TTCGATGTCGATGGATGATT+TGG | + | chr4_4:2099052-2099071 | Msa0663320:CDS | 40.0% | |
| TTCTGTTCATCATCAGAGAC+AGG | - | chr4_4:2099197-2099216 | None:intergenic | 40.0% | |
| ! | CAAGATGATGATGATGCTTC+TGG | + | chr4_4:2099389-2099408 | Msa0663320:CDS | 40.0% |
| ! | TTTTCTGTTTCCTATGTCCG+AGG | + | chr4_4:2099499-2099518 | Msa0663320:CDS | 40.0% |
| ! | AGTGGACTTGGTTCATCCAA+AGG | - | chr4_4:2096158-2096177 | None:intergenic | 45.0% |
| TTGGATGAACCAAGTCCACT+TGG | + | chr4_4:2096158-2096177 | Msa0663320:CDS | 45.0% | |
| TTCTTCAGACGCAAACCAAG+TGG | - | chr4_4:2096176-2096195 | None:intergenic | 45.0% | |
| GAAGAAGAGTCCTTCACTGT+TGG | + | chr4_4:2096190-2096209 | Msa0663320:CDS | 45.0% | |
| AGAGCCATGATATCAGACCA+TGG | - | chr4_4:2096818-2096837 | None:intergenic | 45.0% | |
| GTCTGATATCATGGCTCTCA+AGG | + | chr4_4:2096820-2096839 | Msa0663320:CDS | 45.0% | |
| !! | ATTTGTTGTAGCTGGCAAGG+AGG | + | chr4_4:2097392-2097411 | Msa0663320:intron | 45.0% |
| AAGGTATGCTTCCTTGGTTG+TGG | - | chr4_4:2097442-2097461 | None:intergenic | 45.0% | |
| ! | AACCAAGGAAGCATACCTTG+TGG | + | chr4_4:2097443-2097462 | Msa0663320:CDS | 45.0% |
| ! | GTCTGTTGTTGATTGCCACA+AGG | - | chr4_4:2097461-2097480 | None:intergenic | 45.0% |
| CGTCATCTCAAGTGCATGAT+TGG | + | chr4_4:2097538-2097557 | Msa0663320:intron | 45.0% | |
| CAAGTGCATGATTGGAATGG+CGG | + | chr4_4:2097546-2097565 | Msa0663320:intron | 45.0% | |
| AATGCCCTCAAGGTCTGTTA+GGG | + | chr4_4:2097796-2097815 | Msa0663320:CDS | 45.0% | |
| TTGGCTCAGAAAGTTGAGAC+GGG | - | chr4_4:2097853-2097872 | None:intergenic | 45.0% | |
| ! | GTTGGCTCAGAAAGTTGAGA+CGG | - | chr4_4:2097854-2097873 | None:intergenic | 45.0% |
| CAACTTTCTGAGCCAACAAC+CGG | + | chr4_4:2097857-2097876 | Msa0663320:CDS | 45.0% | |
| CCAACACAAATTCCGGTTGT+TGG | - | chr4_4:2097872-2097891 | None:intergenic | 45.0% | |
| CCAACAACCGGAATTTGTGT+TGG | + | chr4_4:2097869-2097888 | Msa0663320:CDS | 45.0% | |
| GCAGTTCCAGTCTCAAAGTA+TGG | - | chr4_4:2097900-2097919 | None:intergenic | 45.0% | |
| AGAAGAAGTGAAGGGAAAGC+TGG | + | chr4_4:2097957-2097976 | Msa0663320:CDS | 45.0% | |
| GAAGAAGTGAAGGGAAAGCT+GGG | + | chr4_4:2097958-2097977 | Msa0663320:CDS | 45.0% | |
| ! | GAAGGGAAAGCTGGGATTTT+TGG | + | chr4_4:2097966-2097985 | Msa0663320:CDS | 45.0% |
| GACTGCATGATGTGGAATCA+GGG | + | chr4_4:2097988-2098007 | Msa0663320:CDS | 45.0% | |
| GAAATTACCTCACCTAGCTC+AGG | + | chr4_4:2098083-2098102 | Msa0663320:CDS | 45.0% | |
| CCATAGGAATTACCTGAGCT+AGG | - | chr4_4:2098098-2098117 | None:intergenic | 45.0% | |
| CCTAGCTCAGGTAATTCCTA+TGG | + | chr4_4:2098095-2098114 | Msa0663320:intron | 45.0% | |
| TACAGTTTCACCGACCATTC+AGG | - | chr4_4:2098291-2098310 | None:intergenic | 45.0% | |
| TGGTTGAGATTTGCATGCAC+AGG | + | chr4_4:2098477-2098496 | Msa0663320:intron | 45.0% | |
| ATTAATCTGCAATCCGGGTG+AGG | + | chr4_4:2098523-2098542 | Msa0663320:intron | 45.0% | |
| TTAATCTGCAATCCGGGTGA+GGG | + | chr4_4:2098524-2098543 | Msa0663320:intron | 45.0% | |
| CCCATGCAATCAAAGGTTTC+AGG | + | chr4_4:2098961-2098980 | Msa0663320:CDS | 45.0% | |
| ATCAAAGGTTTCAGGAGCAG+AGG | + | chr4_4:2098969-2098988 | Msa0663320:CDS | 45.0% | |
| ACACTGCATTTCGGAACAGA+TGG | + | chr4_4:2099088-2099107 | Msa0663320:CDS | 45.0% | |
| CACTGCATTTCGGAACAGAT+GGG | + | chr4_4:2099089-2099108 | Msa0663320:CDS | 45.0% | |
| AGCTCTGTCATTAGTGAAGC+TGG | - | chr4_4:2099126-2099145 | None:intergenic | 45.0% | |
| CACTAATGACAGAGCTGTGT+TGG | + | chr4_4:2099130-2099149 | Msa0663320:CDS | 45.0% | |
| TAATGACAGAGCTGTGTTGG+AGG | + | chr4_4:2099133-2099152 | Msa0663320:CDS | 45.0% | |
| TGTTCATCATCAGAGACAGG+TGG | - | chr4_4:2099194-2099213 | None:intergenic | 45.0% | |
| AGCAAGGAAATGGTCTGTCT+AGG | + | chr4_4:2099420-2099439 | Msa0663320:CDS | 45.0% | |
| CTGTCTAGGAAAGAATCAGC+TGG | + | chr4_4:2099434-2099453 | Msa0663320:CDS | 45.0% | |
| CTATCAGAATCCTCGGACAT+AGG | - | chr4_4:2099512-2099531 | None:intergenic | 45.0% | |
| !!! | ATAAATTTTTTAATTTATTG+TGG | + | chr4_4:2098612-2098631 | Msa0663320:intron | 5.0% |
| ! | AGACGCAAACCAAGTGGACT+TGG | - | chr4_4:2096170-2096189 | None:intergenic | 50.0% |
| TGCTGCTGATAGCAAGCTCA+AGG | + | chr4_4:2096295-2096314 | Msa0663320:CDS | 50.0% | |
| TCTCAAGGCAAACTACCCTG+AGG | + | chr4_4:2096835-2096854 | Msa0663320:CDS | 50.0% | |
| ! | ATGTTCCTGGAGCATCCTCA+GGG | - | chr4_4:2096853-2096872 | None:intergenic | 50.0% |
| ! | AATGTTCCTGGAGCATCCTC+AGG | - | chr4_4:2096854-2096873 | None:intergenic | 50.0% |
| TGAGGATGCTCCAGGAACAT+TGG | + | chr4_4:2096853-2096872 | Msa0663320:CDS | 50.0% | |
| !! | AAGGAGGCCCCTGTTTTTCA+GGG | + | chr4_4:2097408-2097427 | Msa0663320:CDS | 50.0% |
| GGGAGATCAATCCACAACCA+AGG | + | chr4_4:2097428-2097447 | Msa0663320:CDS | 50.0% | |
| TGCCACAAGGTATGCTTCCT+TGG | - | chr4_4:2097448-2097467 | None:intergenic | 50.0% | |
| GTGGACAAGCCAGCATACAT+AGG | + | chr4_4:2097488-2097507 | Msa0663320:CDS | 50.0% | |
| !! | CTTGAGGGCATTGCACAAAG+TGG | - | chr4_4:2097788-2097807 | None:intergenic | 50.0% |
| CACTTTGTGCAATGCCCTCA+AGG | + | chr4_4:2097786-2097805 | Msa0663320:CDS | 50.0% | |
| CAATGCCCTCAAGGTCTGTT+AGG | + | chr4_4:2097795-2097814 | Msa0663320:CDS | 50.0% | |
| TGGCTCAGAAAGTTGAGACG+GGG | - | chr4_4:2097852-2097871 | None:intergenic | 50.0% | |
| GGACTGCATGATGTGGAATC+AGG | + | chr4_4:2097987-2098006 | Msa0663320:CDS | 50.0% | |
| CATGATGTGGAATCAGGGTC+TGG | + | chr4_4:2097993-2098012 | Msa0663320:CDS | 50.0% | |
| GGAATTACCTGAGCTAGGTG+AGG | - | chr4_4:2098093-2098112 | None:intergenic | 50.0% | |
| !! | ATTTGGCTGCACCGGCTATA+TGG | - | chr4_4:2098422-2098441 | None:intergenic | 50.0% |
| CACAGGTTCAACGGTTGTAG+AGG | + | chr4_4:2098494-2098513 | Msa0663320:intron | 50.0% | |
| TAAAACTTCCCTCCCTCACC+CGG | - | chr4_4:2098539-2098558 | None:intergenic | 50.0% | |
| TCTTCACCCTTCGATGTCGA+TGG | + | chr4_4:2099043-2099062 | Msa0663320:CDS | 50.0% | |
| CCACATCGGACACTGCATTT+CGG | + | chr4_4:2099079-2099098 | Msa0663320:CDS | 50.0% | |
| ! | CAGGAGGGTCTTTCTGAAGA+AGG | - | chr4_4:2099250-2099269 | None:intergenic | 50.0% |
| ! | GTTTTTCTTCGGGTGCAGGA+GGG | - | chr4_4:2099265-2099284 | None:intergenic | 50.0% |
| ! | TGTTTTTCTTCGGGTGCAGG+AGG | - | chr4_4:2099266-2099285 | None:intergenic | 50.0% |
| TCCTGCACCCGAAGAAAAAC+AGG | + | chr4_4:2099265-2099284 | Msa0663320:CDS | 50.0% | |
| !! | ACCTGTTTTTCTTCGGGTGC+AGG | - | chr4_4:2099269-2099288 | None:intergenic | 50.0% |
| ACAGACCATTTCCTTGCTGC+TGG | - | chr4_4:2099418-2099437 | None:intergenic | 50.0% | |
| TGTGGCAGAGAAGCAATCCT+TGG | - | chr4_4:2099479-2099498 | None:intergenic | 50.0% | |
| AACTACCCTGAGGATGCTCC+AGG | + | chr4_4:2096845-2096864 | Msa0663320:CDS | 55.0% | |
| !! | CAAGGAGGCCCCTGTTTTTC+AGG | + | chr4_4:2097407-2097426 | Msa0663320:CDS | 55.0% |
| GCCTCCCTAACAGACCTTGA+GGG | - | chr4_4:2097803-2097822 | None:intergenic | 55.0% | |
| TGCCTCCCTAACAGACCTTG+AGG | - | chr4_4:2097804-2097823 | None:intergenic | 55.0% | |
| AACCCTCAATGCCGGATCCT+CGG | + | chr4_4:2098393-2098412 | Msa0663320:intron | 55.0% | |
| CTATATGGCTGCCGAGGATC+CGG | - | chr4_4:2098407-2098426 | None:intergenic | 55.0% | |
| ATCCTCGGCAGCCATATAGC+CGG | + | chr4_4:2098408-2098427 | Msa0663320:intron | 55.0% | |
| TGGTCGAGATTTGGCTGCAC+CGG | - | chr4_4:2098430-2098449 | None:intergenic | 55.0% | |
| GACATCGAAGGGTGAAGACC+AGG | - | chr4_4:2099041-2099060 | None:intergenic | 55.0% | |
| CCGAAATGCAGTGTCCGATG+TGG | - | chr4_4:2099082-2099101 | None:intergenic | 55.0% | |
| GGTAGCCAGCAGCAAGGAAA+TGG | + | chr4_4:2099410-2099429 | Msa0663320:CDS | 55.0% | |
| GCCCTCAAGGTCTGTTAGGG+AGG | + | chr4_4:2097799-2097818 | Msa0663320:CDS | 60.0% | |
| ! | TGCCGAGGATCCGGCATTGA+GGG | - | chr4_4:2098398-2098417 | None:intergenic | 60.0% |
| ATCTGCAATCCGGGTGAGGG+AGG | + | chr4_4:2098527-2098546 | Msa0663320:intron | 60.0% | |
| TCTGCAATCCGGGTGAGGGA+GGG | + | chr4_4:2098528-2098547 | Msa0663320:intron | 60.0% | |
| GCTTCTGGTAGCCAGCAGCA+AGG | + | chr4_4:2099404-2099423 | Msa0663320:CDS | 60.0% | |
| CTGCCGAGGATCCGGCATTG+AGG | - | chr4_4:2098399-2098418 | None:intergenic | 65.0% | |
| ! | CACCGGCTATATGGCTGCCG+AGG | - | chr4_4:2098413-2098432 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 2095616 | 2099792 | 2095616 | ID=Msa0663320;Name=Msa0663320 |
| chr4_4 | mRNA | 2095616 | 2099792 | 2095616 | ID=Msa0663320-mRNA-1;Parent=Msa0663320;Name=Msa0663320-mRNA-1;_AED=0.04;_eAED=0.04;_QI=124|1|1|1|1|1|6|248|525 |
| chr4_4 | exon | 2095616 | 2095874 | 2095616 | ID=Msa0663320-mRNA-1:exon:548;Parent=Msa0663320-mRNA-1 |
| chr4_4 | exon | 2096116 | 2096361 | 2096116 | ID=Msa0663320-mRNA-1:exon:549;Parent=Msa0663320-mRNA-1 |
| chr4_4 | exon | 2096710 | 2096883 | 2096710 | ID=Msa0663320-mRNA-1:exon:550;Parent=Msa0663320-mRNA-1 |
| chr4_4 | exon | 2097403 | 2097509 | 2097403 | ID=Msa0663320-mRNA-1:exon:551;Parent=Msa0663320-mRNA-1 |
| chr4_4 | exon | 2097782 | 2098104 | 2097782 | ID=Msa0663320-mRNA-1:exon:552;Parent=Msa0663320-mRNA-1 |
| chr4_4 | exon | 2098952 | 2099792 | 2098952 | ID=Msa0663320-mRNA-1:exon:553;Parent=Msa0663320-mRNA-1 |
| chr4_4 | five_prime_UTR | 2095616 | 2095739 | 2095616 | ID=Msa0663320-mRNA-1:five_prime_utr;Parent=Msa0663320-mRNA-1 |
| chr4_4 | CDS | 2095740 | 2095874 | 2095740 | ID=Msa0663320-mRNA-1:cds;Parent=Msa0663320-mRNA-1 |
| chr4_4 | CDS | 2096116 | 2096361 | 2096116 | ID=Msa0663320-mRNA-1:cds;Parent=Msa0663320-mRNA-1 |
| chr4_4 | CDS | 2096710 | 2096883 | 2096710 | ID=Msa0663320-mRNA-1:cds;Parent=Msa0663320-mRNA-1 |
| chr4_4 | CDS | 2097403 | 2097509 | 2097403 | ID=Msa0663320-mRNA-1:cds;Parent=Msa0663320-mRNA-1 |
| chr4_4 | CDS | 2097782 | 2098104 | 2097782 | ID=Msa0663320-mRNA-1:cds;Parent=Msa0663320-mRNA-1 |
| chr4_4 | CDS | 2098952 | 2099544 | 2098952 | ID=Msa0663320-mRNA-1:cds;Parent=Msa0663320-mRNA-1 |
| chr4_4 | three_prime_UTR | 2099545 | 2099792 | 2099545 | ID=Msa0663320-mRNA-1:three_prime_utr;Parent=Msa0663320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
