Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664030 | XP_013454547.1 | 95.472 | 530 | 14 | 4 | 1 | 525 | 1 | 525 | 0.0 | 1025 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664030 | A0A072UHH6 | 95.472 | 530 | 14 | 4 | 1 | 525 | 1 | 525 | 0.0 | 1025 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0626180 | Msa0664030 | 0.932643 | 6.257665e-95 | -8.615850e-47 |
| Msa0663320 | Msa0664030 | 0.993400 | 1.776741e-199 | -8.615850e-47 |
| Msa0664030 | Msa1267080 | 0.801055 | 1.078527e-48 | -8.615850e-47 |
| Msa0664030 | Msa1401550 | 0.811944 | 5.433137e-51 | -8.615850e-47 |
| Msa0527880 | Msa0664030 | 0.892844 | 1.090809e-74 | -8.615850e-47 |
| Msa0586160 | Msa0664030 | 0.942982 | 2.729854e-102 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664030 | MtrunA17_Chr4g0001981 | 95.472 | 530 | 14 | 4 | 1 | 525 | 1 | 525 | 0.0 | 1025 |
| Msa0664030 | MtrunA17_Chr4g0073561 | 50.214 | 468 | 203 | 9 | 60 | 519 | 51 | 496 | 2.85e-137 | 406 |
| Msa0664030 | MtrunA17_Chr1g0192751 | 44.737 | 190 | 96 | 3 | 65 | 253 | 42 | 223 | 4.61e-44 | 160 |
| Msa0664030 | MtrunA17_Chr6g0453721 | 38.049 | 205 | 109 | 5 | 60 | 262 | 1 | 189 | 3.86e-34 | 128 |
| Msa0664030 | MtrunA17_Chr6g0453841 | 34.091 | 220 | 112 | 6 | 60 | 262 | 1 | 204 | 1.47e-26 | 108 |
| Msa0664030 | MtrunA17_Chr4g0073591 | 65.217 | 69 | 24 | 0 | 126 | 194 | 14 | 82 | 1.13e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0664030 | AT2G24100.1 | 44.906 | 530 | 216 | 13 | 1 | 519 | 1 | 465 | 9.00e-130 | 386 |
| Msa0664030 | AT4G30780.1 | 50.398 | 377 | 150 | 7 | 17 | 370 | 26 | 388 | 4.51e-112 | 345 |
| Msa0664030 | AT4G30780.1 | 35.429 | 175 | 92 | 7 | 354 | 525 | 433 | 589 | 1.82e-13 | 73.6 |
| Msa0664030 | AT3G05770.2 | 40.000 | 215 | 119 | 4 | 60 | 265 | 20 | 233 | 8.94e-37 | 140 |
| Msa0664030 | AT3G05770.1 | 40.000 | 215 | 119 | 4 | 60 | 265 | 20 | 233 | 1.37e-36 | 140 |
| Msa0664030 | AT1G54300.1 | 42.500 | 160 | 82 | 4 | 115 | 265 | 2 | 160 | 3.24e-29 | 117 |
Find 129 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGTTGAAATCGAATT+TGG | 0.132685 | 4_4:+3004623 | None:intergenic |
| AACCTCTTTATTGTAGTCTT+TGG | 0.211501 | 4_4:-3000886 | Msa0664030:three_prime_UTR |
| TAAGAGTAAAATGTTTGATT+TGG | 0.223076 | 4_4:-3001102 | Msa0664030:CDS |
| ACCCTTCTGATCTTTCTTCT+TGG | 0.228703 | 4_4:+3004217 | None:intergenic |
| CTGAGAAACTTATCAGATTC+AGG | 0.259989 | 4_4:+3001467 | None:intergenic |
| CAGAAGTGAACAAAATCTTA+TGG | 0.288359 | 4_4:-3002427 | Msa0664030:CDS |
| TTCTTCACAATTATCAACTA+TGG | 0.296994 | 4_4:-3004745 | Msa0664030:exon |
| CCCATGCAATCAAAGGTTTC+AGG | 0.301138 | 4_4:-3001499 | Msa0664030:CDS |
| AAGAGTAAAATGTTTGATTT+GGG | 0.305973 | 4_4:-3001101 | Msa0664030:CDS |
| TGTTTGGAACAGTGTGATTC+AGG | 0.311820 | 4_4:-3004362 | Msa0664030:intron |
| CAATGCCCTCAAGGTCTGTT+AGG | 0.323271 | 4_4:-3002666 | Msa0664030:CDS |
| TTCGATGTCGATGGATGATT+TGG | 0.335720 | 4_4:-3001408 | Msa0664030:CDS |
| GGACTGCATGATGTGGAATC+AGG | 0.352036 | 4_4:-3002474 | Msa0664030:CDS |
| AGCTAGGTGAGGTAATTTCT+TGG | 0.354560 | 4_4:+3002382 | None:intergenic |
| AGAAGAAGTGAAGGGAAAGC+TGG | 0.361169 | 4_4:-3002504 | Msa0664030:CDS |
| CATTGAATTGAGTGATGGTT+TGG | 0.363177 | 4_4:-3002529 | Msa0664030:CDS |
| ACAATAACTTCCAATGTTCC+TGG | 0.363801 | 4_4:+3003598 | None:intergenic |
| TCCGATTTCATACAATCCTT+TGG | 0.368995 | 4_4:-3004327 | Msa0664030:CDS |
| TTGCGAAGCATAAGCTTGTA+TGG | 0.377568 | 4_4:-3003708 | Msa0664030:CDS |
| GTCTAGATATGAAGGAGATT+TGG | 0.382647 | 4_4:-3003746 | Msa0664030:CDS |
| TGCCACAAGGTATGCTTCCT+TGG | 0.393612 | 4_4:+3003016 | None:intergenic |
| TCCTGAAACCTTTGATTGCA+TGG | 0.393638 | 4_4:+3001498 | None:intergenic |
| TCCAAAGGATTGTATGAAAT+CGG | 0.396620 | 4_4:+3004326 | None:intergenic |
| TTTCTGAAGAAGGCAGTATA+AGG | 0.405521 | 4_4:+3001223 | None:intergenic |
| CAATCAACAACAGACTTTAC+TGG | 0.408931 | 4_4:-3002995 | Msa0664030:CDS |
| GGAGAATCCAACACAAATTC+CGG | 0.411628 | 4_4:+3002585 | None:intergenic |
| CCACATCGGACACTGCATTT+CGG | 0.412120 | 4_4:-3001381 | Msa0664030:CDS |
| GCAGTTCCAGTCTCAAAGTA+TGG | 0.416139 | 4_4:+3002564 | None:intergenic |
| CAAGATGATGATGATGCTTC+TGG | 0.418720 | 4_4:-3001071 | Msa0664030:CDS |
| TCAGAGTTGAAATCGAATTT+GGG | 0.419622 | 4_4:+3004624 | None:intergenic |
| CTATCAGAATCCTCGGACAT+AGG | 0.423015 | 4_4:+3000951 | None:intergenic |
| CCTGAAACCTTTGATTGCAT+GGG | 0.423667 | 4_4:+3001499 | None:intergenic |
| GTTGGTTACTTAAACTCAAT+GGG | 0.426099 | 4_4:-3000839 | Msa0664030:three_prime_UTR |
| AGTTGGTTACTTAAACTCAA+TGG | 0.430062 | 4_4:-3000840 | Msa0664030:three_prime_UTR |
| CCAATCTTCAAAACAGTAGC+AGG | 0.430225 | 4_4:+3004137 | None:intergenic |
| TGTGATTCAGGTGATGATTC+TGG | 0.430308 | 4_4:-3004350 | Msa0664030:CDS |
| CTTGTATGGGAAGTTCTTGA+TGG | 0.433138 | 4_4:-3003694 | Msa0664030:CDS |
| AATGTTCCTGGAGCATCCTC+AGG | 0.433779 | 4_4:+3003610 | None:intergenic |
| CCAACACAAATTCCGGTTGT+TGG | 0.433853 | 4_4:+3002592 | None:intergenic |
| GGTAGCCAGCAGCAAGGAAA+TGG | 0.434094 | 4_4:-3001050 | Msa0664030:CDS |
| AAGGTATGCTTCCTTGGTTG+TGG | 0.434236 | 4_4:+3003022 | None:intergenic |
| AGCTCTGTCATTAGTGAAGC+TGG | 0.450625 | 4_4:+3001337 | None:intergenic |
| AGAAGTGAACAAAATCTTAT+GGG | 0.452591 | 4_4:-3002426 | Msa0664030:CDS |
| CAACTTTCTGAGCCAACAAC+CGG | 0.458040 | 4_4:-3002604 | Msa0664030:CDS |
| CTGAAACCTTTGATTGCATG+GGG | 0.466395 | 4_4:+3001500 | None:intergenic |
| GATTCTCCATACTTTGAGAC+TGG | 0.468589 | 4_4:-3002570 | Msa0664030:CDS |
| TTATTTATACCTATGTATGC+TGG | 0.472570 | 4_4:+3002964 | None:intergenic |
| GAAGAAGTGAAGGGAAAGCT+GGG | 0.473769 | 4_4:-3002503 | Msa0664030:CDS |
| CACTTTGTGCAATGCCCTCA+AGG | 0.479139 | 4_4:-3002675 | Msa0664030:CDS |
| ACAGACCATTTCCTTGCTGC+TGG | 0.483280 | 4_4:+3001045 | None:intergenic |
| CACTAATGACAGAGCTGTGT+TGG | 0.483298 | 4_4:-3001330 | Msa0664030:CDS |
| GAAGAAGAGTCCTTCACTGT+TGG | 0.484620 | 4_4:-3004276 | Msa0664030:CDS |
| AATTCCATGGTCTGATATCA+TGG | 0.485625 | 4_4:-3003650 | Msa0664030:CDS |
| TTTCAACTCTGATTCTCCTA+AGG | 0.489774 | 4_4:-3004613 | Msa0664030:intron |
| CCAACAACCGGAATTTGTGT+TGG | 0.491090 | 4_4:-3002592 | Msa0664030:CDS |
| TTGAGTCAGATTAAGTTGCC+TGG | 0.498526 | 4_4:-3001440 | Msa0664030:CDS |
| AGACGCAAACCAAGTGGACT+TGG | 0.503986 | 4_4:+3004299 | None:intergenic |
| TCTTCACCCTTCGATGTCGA+TGG | 0.504190 | 4_4:-3001417 | Msa0664030:CDS |
| GAAATGGAAAATATCACTGT+TGG | 0.504344 | 4_4:+3000788 | None:intergenic |
| CAGTATAAGTCTAGATATGA+AGG | 0.517526 | 4_4:-3003754 | Msa0664030:CDS |
| ATTTGCTTCTGAATCTTCCA+AGG | 0.519721 | 4_4:-3001001 | Msa0664030:CDS |
| CACTCAATTCAATGTGGTCA+TGG | 0.523533 | 4_4:+3002538 | None:intergenic |
| TGTGGCAGAGAAGCAATCCT+TGG | 0.523882 | 4_4:+3000984 | None:intergenic |
| GAAATTACCTCACCTAGCTC+AGG | 0.524612 | 4_4:-3002378 | Msa0664030:intron |
| TGAGGATGCTCCAGGAACAT+TGG | 0.526671 | 4_4:-3003608 | Msa0664030:CDS |
| GTCTGATATCATGGCTCTCA+AGG | 0.526777 | 4_4:-3003641 | Msa0664030:CDS |
| TAATGACAGAGCTGTGTTGG+AGG | 0.526990 | 4_4:-3001327 | Msa0664030:CDS |
| CATGATGTGGAATCAGGGTC+TGG | 0.530089 | 4_4:-3002468 | Msa0664030:CDS |
| AGAATAAGATTGAAATTCCA+TGG | 0.535046 | 4_4:-3003663 | Msa0664030:CDS |
| TTGGATGAACCAAGTCCACT+TGG | 0.535980 | 4_4:-3004308 | Msa0664030:CDS |
| TTCTGTTCATCATCAGAGAC+AGG | 0.536856 | 4_4:+3001266 | None:intergenic |
| GACATCGAAGGGTGAAGACC+AGG | 0.537780 | 4_4:+3001422 | None:intergenic |
| TGCCAAAGACTACAATAAAG+AGG | 0.539321 | 4_4:+3000884 | None:intergenic |
| TGCTGCTGATAGCAAGCTCA+AGG | 0.539666 | 4_4:-3004171 | Msa0664030:CDS |
| TTGGCTCAGAAAGTTGAGAC+GGG | 0.539829 | 4_4:+3002611 | None:intergenic |
| CAGGAGGGTCTTTCTGAAGA+AGG | 0.541302 | 4_4:+3001213 | None:intergenic |
| CTGTCTAGGAAAGAATCAGC+TGG | 0.542082 | 4_4:-3001026 | Msa0664030:CDS |
| AACTACCCTGAGGATGCTCC+AGG | 0.542158 | 4_4:-3003616 | Msa0664030:CDS |
| GCCTCCCTAACAGACCTTGA+GGG | 0.542641 | 4_4:+3002661 | None:intergenic |
| ACACTGCATTTCGGAACAGA+TGG | 0.543363 | 4_4:-3001372 | Msa0664030:CDS |
| AATGCCCTCAAGGTCTGTTA+GGG | 0.546969 | 4_4:-3002665 | Msa0664030:CDS |
| TGTATTTGTTGTAGCTGGCA+AGG | 0.547557 | 4_4:-3003072 | Msa0664030:intron |
| TGCGAAGCATAAGCTTGTAT+GGG | 0.558386 | 4_4:-3003707 | Msa0664030:CDS |
| GCTGGACATCGTAGAAAAGC+AGG | 0.559213 | 4_4:-3004845 | Msa0664030:five_prime_UTR |
| TTCCAAGAAGAAAGATCAGA+AGG | 0.560722 | 4_4:-3004219 | Msa0664030:CDS |
| GCCCTCAAGGTCTGTTAGGG+AGG | 0.562789 | 4_4:-3002662 | Msa0664030:CDS |
| GGTTTGGATAGAAGAAGTGA+AGG | 0.566531 | 4_4:-3002513 | Msa0664030:CDS |
| AACATGACTATCAGAATCCT+CGG | 0.577952 | 4_4:+3000944 | None:intergenic |
| CACTGCATTTCGGAACAGAT+GGG | 0.578013 | 4_4:-3001371 | Msa0664030:CDS |
| TAGATATGAAGGAGATTTGG+TGG | 0.584423 | 4_4:-3003743 | Msa0664030:CDS |
| TGCCTCCCTAACAGACCTTG+AGG | 0.584503 | 4_4:+3002660 | None:intergenic |
| GTGGACAAGCCAGCATACAT+AGG | 0.584639 | 4_4:-3002973 | Msa0664030:intron |
| AGCAAGGAAATGGTCTGTCT+AGG | 0.585074 | 4_4:-3001040 | Msa0664030:CDS |
| AAATCATCCATCGACATCGA+AGG | 0.585590 | 4_4:+3001410 | None:intergenic |
| AGTGGACTTGGTTCATCCAA+AGG | 0.586408 | 4_4:+3004311 | None:intergenic |
| CCATAGGAATTACCTGAGCT+AGG | 0.591916 | 4_4:+3002366 | None:intergenic |
| TTCTTCAGACGCAAACCAAG+TGG | 0.595315 | 4_4:+3004293 | None:intergenic |
| ATCAAAGGTTTCAGGAGCAG+AGG | 0.596879 | 4_4:-3001491 | Msa0664030:CDS |
| GACTGCATGATGTGGAATCA+GGG | 0.597635 | 4_4:-3002473 | Msa0664030:CDS |
| GACATAGGAAACAGAAAATG+TGG | 0.600386 | 4_4:+3000966 | None:intergenic |
| TGAATCAAATCCAACAGTGA+AGG | 0.602378 | 4_4:+3004266 | None:intergenic |
| GTTGGCTCAGAAAGTTGAGA+CGG | 0.604139 | 4_4:+3002610 | None:intergenic |
| GAAGATAGAAAAGTTGATGA+GGG | 0.606665 | 4_4:-3001140 | Msa0664030:CDS |
| TTTGAAGATTGGTACTTGGG+AGG | 0.609526 | 4_4:-3004126 | Msa0664030:intron |
| GACCACATTGAATTGAGTGA+TGG | 0.611625 | 4_4:-3002534 | Msa0664030:CDS |
| TGAAGATAGAAAAGTTGATG+AGG | 0.612436 | 4_4:-3001141 | Msa0664030:CDS |
| AATCATCCATCGACATCGAA+GGG | 0.616354 | 4_4:+3001411 | None:intergenic |
| GTCTGTTGTTGATTGCCACA+AGG | 0.622596 | 4_4:+3003003 | None:intergenic |
| CTTGAGGGCATTGCACAAAG+TGG | 0.635048 | 4_4:+3002676 | None:intergenic |
| TCAACAACAGACTTTACTGG+TGG | 0.640598 | 4_4:-3002992 | Msa0664030:CDS |
| CAATCTTCAAAACAGTAGCA+GGG | 0.640997 | 4_4:+3004138 | None:intergenic |
| ATGTTCCTGGAGCATCCTCA+GGG | 0.646838 | 4_4:+3003611 | None:intergenic |
| GTTTGGATAGAAGAAGTGAA+GGG | 0.651890 | 4_4:-3002512 | Msa0664030:CDS |
| TCCAAGAAGAAAGATCAGAA+GGG | 0.651999 | 4_4:-3004218 | Msa0664030:CDS |
| TGTTCATCATCAGAGACAGG+TGG | 0.655949 | 4_4:+3001269 | None:intergenic |
| ATTTGTTGTAGCTGGCAAGG+AGG | 0.658694 | 4_4:-3003069 | Msa0664030:intron |
| GGGAGATCAATCCACAACCA+AGG | 0.673080 | 4_4:-3003033 | Msa0664030:CDS |
| GCTTCTGGTAGCCAGCAGCA+AGG | 0.673116 | 4_4:-3001056 | Msa0664030:CDS |
| ATGAACAGAATGTCATGACA+AGG | 0.678824 | 4_4:-3001253 | Msa0664030:CDS |
| GGAATTACCTGAGCTAGGTG+AGG | 0.680636 | 4_4:+3002371 | None:intergenic |
| TGGCTCAGAAAGTTGAGACG+GGG | 0.681167 | 4_4:+3002612 | None:intergenic |
| GATGATTTGGTTAACCACAT+CGG | 0.685792 | 4_4:-3001395 | Msa0664030:CDS |
| AGAGCCATGATATCAGACCA+TGG | 0.692062 | 4_4:+3003646 | None:intergenic |
| TGAAACCTTTGATTGCATGG+GGG | 0.696180 | 4_4:+3001501 | None:intergenic |
| CCGAAATGCAGTGTCCGATG+TGG | 0.700782 | 4_4:+3001381 | None:intergenic |
| AACCATCACTCAATTCAATG+TGG | 0.718712 | 4_4:+3002532 | None:intergenic |
| TCTCAAGGCAAACTACCCTG+AGG | 0.745164 | 4_4:-3003626 | Msa0664030:CDS |
| TGAACAGAATGTCATGACAA+GGG | 0.758366 | 4_4:-3001252 | Msa0664030:CDS |
| AACCAAGGAAGCATACCTTG+TGG | 0.758682 | 4_4:-3003018 | Msa0664030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGTTAATTTCATAT+TGG | - | chr4_4:3001066-3001085 | Msa0664030:CDS | 10.0% |
| !!! | TTTTTTGTTAATTTCATATT+GGG | - | chr4_4:3001067-3001086 | Msa0664030:CDS | 10.0% |
| !!! | TTTTATACATTGTTTTAATT+TGG | - | chr4_4:3003196-3003215 | Msa0664030:intron | 10.0% |
| !!! | TTTTAATTTCAAATTTAACA+TGG | - | chr4_4:3003310-3003329 | Msa0664030:intron | 10.0% |
| !! | TAATCATTATCATTATATAA+TGG | - | chr4_4:3003869-3003888 | Msa0664030:intron | 10.0% |
| !! | ATAAGTTATTTATCAAAACA+GGG | + | chr4_4:3001503-3001522 | None:intergenic | 15.0% |
| !! | AATAAGTTATTTATCAAAAC+AGG | + | chr4_4:3001504-3001523 | None:intergenic | 15.0% |
| !!! | TTTTATTGCTTAATAGATTT+TGG | - | chr4_4:3002167-3002186 | Msa0664030:intron | 15.0% |
| !!! | TTTTATTGCTTAATAGATTT+TGG | - | chr4_4:3002167-3002186 | Msa0664030:intron | 15.0% |
| !! | TGTATAAAAAAAATATCCAT+AGG | + | chr4_4:3003185-3003204 | None:intergenic | 15.0% |
| !! | AGAGGAATAATATTATAAAA+TGG | + | chr4_4:3003813-3003832 | None:intergenic | 15.0% |
| !!! | ATATGGAATTATATCATTTT+CGG | + | chr4_4:3003987-3004006 | None:intergenic | 15.0% |
| !!! | GTTTAATTTTCAGTTTGTTA+TGG | - | chr4_4:3001092-3001111 | Msa0664030:CDS | 20.0% |
| !!! | ATTGTGTTTTTTTGTTTGTT+TGG | - | chr4_4:3001154-3001173 | Msa0664030:CDS | 20.0% |
| !! | TTTGTTTGTAGAAATAATGA+AGG | - | chr4_4:3001477-3001496 | Msa0664030:CDS | 20.0% |
| !!! | TTTTAATCATTTATGTGTCA+TGG | - | chr4_4:3002012-3002031 | Msa0664030:intron | 20.0% |
| !!! | TTTTATTGCTTACTAGATTT+TGG | - | chr4_4:3002059-3002078 | Msa0664030:intron | 20.0% |
| !!! | TTTTATTGCTCAATAGATTT+TGG | - | chr4_4:3002113-3002132 | Msa0664030:intron | 20.0% |
| !!! | TTAGTTGTTTTCAATTCATT+TGG | - | chr4_4:3002771-3002790 | Msa0664030:intron | 20.0% |
| !!! | ATTCTGTATTTTGTTGTTAT+AGG | - | chr4_4:3002831-3002850 | Msa0664030:intron | 20.0% |
| !! | TATCTCAAGAAATACAAAAA+AGG | + | chr4_4:3003249-3003268 | None:intergenic | 20.0% |
| !!! | ATCTTTTAAATTTTCCTGAA+TGG | - | chr4_4:3003346-3003365 | Msa0664030:intron | 20.0% |
| !! | AATTTAATCATTTGATACTC+TGG | + | chr4_4:3003397-3003416 | None:intergenic | 20.0% |
| !!! | AGAGTATCAAATGATTAAAT+TGG | - | chr4_4:3003396-3003415 | Msa0664030:intron | 20.0% |
| !! | TAATTTATTGTGGATATCTA+CGG | - | chr4_4:3003694-3003713 | Msa0664030:CDS | 20.0% |
| !!! | TGTTGATTATGTTTTTGTTA+TGG | - | chr4_4:3003740-3003759 | Msa0664030:CDS | 20.0% |
| !!! | TATGGAATTATATCATTTTC+GGG | + | chr4_4:3003986-3004005 | None:intergenic | 20.0% |
| !! | TAAGAGTAAAATGTTTGATT+TGG | - | chr4_4:3004430-3004449 | Msa0664030:intron | 20.0% |
| !!! | AAGAGTAAAATGTTTGATTT+GGG | - | chr4_4:3004431-3004450 | Msa0664030:intron | 20.0% |
| !!! | TTTGTTGTCTTTTTTATAAC+TGG | + | chr4_4:3004769-3004788 | None:intergenic | 20.0% |
| ! | TTCTTCACAATTATCAACTA+TGG | - | chr4_4:3000787-3000806 | Msa0664030:three_prime_UTR | 25.0% |
| ! | TCACTTCAAAAAAGTCAAAT+TGG | - | chr4_4:3000841-3000860 | Msa0664030:three_prime_UTR | 25.0% |
| !!! | ATGAAATTAATGATGGGTTT+TGG | + | chr4_4:3000977-3000996 | None:intergenic | 25.0% |
| ! | TTTGTTAATTTCATATTGGG+TGG | - | chr4_4:3001070-3001089 | Msa0664030:CDS | 25.0% |
| !! | GTTGTCTTCATAAGTTATTT+TGG | - | chr4_4:3001622-3001641 | Msa0664030:intron | 25.0% |
| !!! | GATGATGTGATTGTTATTTA+TGG | - | chr4_4:3001750-3001769 | Msa0664030:intron | 25.0% |
| ! | AGAATAAGATTGAAATTCCA+TGG | - | chr4_4:3001869-3001888 | Msa0664030:intron | 25.0% |
| ! | GTGTTAGATATATGCTATAA+TGG | - | chr4_4:3002275-3002294 | Msa0664030:intron | 25.0% |
| ! | AAATAGCATATCGCAAAATA+TGG | + | chr4_4:3002332-3002351 | None:intergenic | 25.0% |
| ! | TTATTTATACCTATGTATGC+TGG | + | chr4_4:3002571-3002590 | None:intergenic | 25.0% |
| ! | AGAAGTGAACAAAATCTTAT+GGG | - | chr4_4:3003106-3003125 | Msa0664030:intron | 25.0% |
| !!! | ATTGTTTTAATTTGGTCTGA+TGG | - | chr4_4:3003204-3003223 | Msa0664030:intron | 25.0% |
| ! | ATACAAAAAAGGCTATAAAC+AGG | + | chr4_4:3003238-3003257 | None:intergenic | 25.0% |
| !! | TTTAAATTTTCCTGAATGGT+CGG | - | chr4_4:3003350-3003369 | Msa0664030:intron | 25.0% |
| ! | AATGCATTAAGATCTATTGA+GGG | + | chr4_4:3003638-3003657 | None:intergenic | 25.0% |
| ! | AATTTATTGTGGATATCTAC+GGG | - | chr4_4:3003695-3003714 | Msa0664030:CDS | 25.0% |
| ! | ATAATGATTAAAGACAGTAG+CGG | + | chr4_4:3003859-3003878 | None:intergenic | 25.0% |
| ! | CTGCAGATGATAATAAAATA+TGG | + | chr4_4:3004004-3004023 | None:intergenic | 25.0% |
| !!! | ATTTTGAACCTGTTTTTCTT+CGG | + | chr4_4:3004348-3004367 | None:intergenic | 25.0% |
| !!! | GTCTTTTTTATAACTGGAAA+TGG | + | chr4_4:3004763-3004782 | None:intergenic | 25.0% |
| ! | AAAAATATGTTCGTGTGTTT+GGG | - | chr4_4:3004786-3004805 | Msa0664030:five_prime_UTR | 25.0% |
| AAAGCAGGAGAAAAACAATT+TGG | - | chr4_4:3000702-3000721 | Msa0664030:three_prime_UTR | 30.0% | |
| TCAGAGTTGAAATCGAATTT+GGG | + | chr4_4:3000911-3000930 | None:intergenic | 30.0% | |
| ATCAGAGTTGAAATCGAATT+TGG | + | chr4_4:3000912-3000931 | None:intergenic | 30.0% | |
| TGAAAGAAAAAGAGAACCTT+AGG | + | chr4_4:3000938-3000957 | None:intergenic | 30.0% | |
| ACCCATCATTAATTTCATTC+TGG | - | chr4_4:3000979-3000998 | Msa0664030:CDS | 30.0% | |
| CCCAGAATGAAATTAATGAT+GGG | + | chr4_4:3000983-3001002 | None:intergenic | 30.0% | |
| CCCATCATTAATTTCATTCT+GGG | - | chr4_4:3000980-3000999 | Msa0664030:CDS | 30.0% | |
| ACCCAGAATGAAATTAATGA+TGG | + | chr4_4:3000984-3001003 | None:intergenic | 30.0% | |
| TCCAAAGGATTGTATGAAAT+CGG | + | chr4_4:3001209-3001228 | None:intergenic | 30.0% | |
| !!! | TGTTTTGAAGATTGGTACTT+GGG | - | chr4_4:3001403-3001422 | Msa0664030:CDS | 30.0% |
| CAGTATAAGTCTAGATATGA+AGG | - | chr4_4:3001778-3001797 | Msa0664030:intron | 30.0% | |
| ATTGACAACATATGCTAAGT+TGG | - | chr4_4:3002435-3002454 | Msa0664030:CDS | 30.0% | |
| !! | CAATTCATTTGGTAATGAAG+TGG | - | chr4_4:3002782-3002801 | Msa0664030:intron | 30.0% |
| AATCACATCATTAAGACATC+AGG | + | chr4_4:3002814-3002833 | None:intergenic | 30.0% | |
| ! | CATAAGATTTTGTTCACTTC+TGG | + | chr4_4:3003107-3003126 | None:intergenic | 30.0% |
| CAGAAGTGAACAAAATCTTA+TGG | - | chr4_4:3003105-3003124 | Msa0664030:intron | 30.0% | |
| GATTAAATTGGCAGTATGTT+TGG | - | chr4_4:3003408-3003427 | Msa0664030:intron | 30.0% | |
| TAGATTGTACCTTGACTAAA+TGG | + | chr4_4:3003522-3003541 | None:intergenic | 30.0% | |
| TTTCTGATTAATCTGCAATC+CGG | - | chr4_4:3003589-3003608 | Msa0664030:intron | 30.0% | |
| ATGCATTAAGATCTATTGAG+GGG | + | chr4_4:3003637-3003656 | None:intergenic | 30.0% | |
| GAATGCATTAAGATCTATTG+AGG | + | chr4_4:3003639-3003658 | None:intergenic | 30.0% | |
| AATATTATTCCTCTGTTCTG+AGG | - | chr4_4:3003819-3003838 | Msa0664030:intron | 30.0% | |
| TAATGATTAAAGACAGTAGC+GGG | + | chr4_4:3003858-3003877 | None:intergenic | 30.0% | |
| ! | CATCACATGTGTCTAAAATA+TGG | - | chr4_4:3003913-3003932 | Msa0664030:intron | 30.0% |
| !! | TTTTGAACCTGTTTTTCTTC+GGG | + | chr4_4:3004347-3004366 | None:intergenic | 30.0% |
| GAAGAAAAACAGGTTCAAAA+TGG | - | chr4_4:3004347-3004366 | Msa0664030:CDS | 30.0% | |
| !! | TGAAGATAGAAAAGTTGATG+AGG | - | chr4_4:3004391-3004410 | Msa0664030:intron | 30.0% |
| !! | GAAGATAGAAAAGTTGATGA+GGG | - | chr4_4:3004392-3004411 | Msa0664030:intron | 30.0% |
| AACCTCTTTATTGTAGTCTT+TGG | - | chr4_4:3004646-3004665 | Msa0664030:CDS | 30.0% | |
| AGTTGGTTACTTAAACTCAA+TGG | - | chr4_4:3004692-3004711 | Msa0664030:CDS | 30.0% | |
| GTTGGTTACTTAAACTCAAT+GGG | - | chr4_4:3004693-3004712 | Msa0664030:CDS | 30.0% | |
| GAAATGGAAAATATCACTGT+TGG | + | chr4_4:3004747-3004766 | None:intergenic | 30.0% | |
| CAAAAATATGTTCGTGTGTT+TGG | - | chr4_4:3004785-3004804 | Msa0664030:five_prime_UTR | 30.0% | |
| TTTCAACTCTGATTCTCCTA+AGG | - | chr4_4:3000919-3000938 | Msa0664030:exon | 35.0% | |
| TCCGATTTCATACAATCCTT+TGG | - | chr4_4:3001205-3001224 | Msa0664030:CDS | 35.0% | |
| TGAATCAAATCCAACAGTGA+AGG | + | chr4_4:3001269-3001288 | None:intergenic | 35.0% | |
| TTCCAAGAAGAAAGATCAGA+AGG | - | chr4_4:3001313-3001332 | Msa0664030:CDS | 35.0% | |
| TCCAAGAAGAAAGATCAGAA+GGG | - | chr4_4:3001314-3001333 | Msa0664030:CDS | 35.0% | |
| CAATCTTCAAAACAGTAGCA+GGG | + | chr4_4:3001397-3001416 | None:intergenic | 35.0% | |
| !!! | CTGTTTTGAAGATTGGTACT+TGG | - | chr4_4:3001402-3001421 | Msa0664030:CDS | 35.0% |
| CACCATCTCAAAACTTATGA+TGG | - | chr4_4:3001716-3001735 | Msa0664030:intron | 35.0% | |
| !!! | CACCATCATAAGTTTTGAGA+TGG | + | chr4_4:3001721-3001740 | None:intergenic | 35.0% |
| GTCTAGATATGAAGGAGATT+TGG | - | chr4_4:3001786-3001805 | Msa0664030:intron | 35.0% | |
| TAGATATGAAGGAGATTTGG+TGG | - | chr4_4:3001789-3001808 | Msa0664030:intron | 35.0% | |
| AATTCCATGGTCTGATATCA+TGG | - | chr4_4:3001882-3001901 | Msa0664030:intron | 35.0% | |
| ACAATAACTTCCAATGTTCC+TGG | + | chr4_4:3001937-3001956 | None:intergenic | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | - | chr4_4:3002077-3002096 | Msa0664030:intron | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | - | chr4_4:3002077-3002096 | Msa0664030:intron | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | - | chr4_4:3002077-3002096 | Msa0664030:intron | 35.0% | |
| TTGTCAAATAGCTTCTGTAG+CGG | - | chr4_4:3002362-3002381 | Msa0664030:intron | 35.0% | |
| ATTGATCTCCCTGAAAAACA+GGG | + | chr4_4:3002490-3002509 | None:intergenic | 35.0% | |
| CAATCAACAACAGACTTTAC+TGG | - | chr4_4:3002537-3002556 | Msa0664030:CDS | 35.0% | |
| GAATGGCGGTAAAATCAAAA+CGG | - | chr4_4:3002631-3002650 | Msa0664030:CDS | 35.0% | |
| AAAACAAATCTGTGCACTCT+TGG | + | chr4_4:3002748-3002767 | None:intergenic | 35.0% | |
| AACCATCACTCAATTCAATG+TGG | + | chr4_4:3003003-3003022 | None:intergenic | 35.0% | |
| CATTGAATTGAGTGATGGTT+TGG | - | chr4_4:3003003-3003022 | Msa0664030:CDS | 35.0% | |
| GTTTGGATAGAAGAAGTGAA+GGG | - | chr4_4:3003020-3003039 | Msa0664030:CDS | 35.0% | |
| ! | AAGATTTTGTTCACTTCTGG+AGG | + | chr4_4:3003104-3003123 | None:intergenic | 35.0% |
| TTGACTAAATGGTCGAGATT+TGG | + | chr4_4:3003511-3003530 | None:intergenic | 35.0% | |
| AAATCTCGACCATTTAGTCA+AGG | - | chr4_4:3003510-3003529 | Msa0664030:intron | 35.0% | |
| AAGGTACAATCTACATCCAA+TGG | - | chr4_4:3003529-3003548 | Msa0664030:intron | 35.0% | |
| TTCTGATTAATCTGCAATCC+GGG | - | chr4_4:3003590-3003609 | Msa0664030:intron | 35.0% | |
| AATCAAAAACCTCAGAACAG+AGG | + | chr4_4:3003831-3003850 | None:intergenic | 35.0% | |
| CGGGTGATAATAAAATCACA+AGG | + | chr4_4:3003967-3003986 | None:intergenic | 35.0% | |
| CTGAGAAACTTATCAGATTC+AGG | + | chr4_4:3004068-3004087 | None:intergenic | 35.0% | |
| !! | GATGATTTGGTTAACCACAT+CGG | - | chr4_4:3004137-3004156 | Msa0664030:CDS | 35.0% |
| ! | TTAGTGAAGCTGGAATTTTC+AGG | + | chr4_4:3004188-3004207 | None:intergenic | 35.0% |
| ATGAACAGAATGTCATGACA+AGG | - | chr4_4:3004279-3004298 | Msa0664030:CDS | 35.0% | |
| TGAACAGAATGTCATGACAA+GGG | - | chr4_4:3004280-3004299 | Msa0664030:CDS | 35.0% | |
| ! | TTTCTGAAGAAGGCAGTATA+AGG | + | chr4_4:3004312-3004331 | None:intergenic | 35.0% |
| ATTTGCTTCTGAATCTTCCA+AGG | - | chr4_4:3004531-3004550 | Msa0664030:intron | 35.0% | |
| GACATAGGAAACAGAAAATG+TGG | + | chr4_4:3004569-3004588 | None:intergenic | 35.0% | |
| AACATGACTATCAGAATCCT+CGG | + | chr4_4:3004591-3004610 | None:intergenic | 35.0% | |
| TGCCAAAGACTACAATAAAG+AGG | + | chr4_4:3004651-3004670 | None:intergenic | 35.0% | |
| ! | GTGCATATTTTATGTGCAGT+TGG | - | chr4_4:3004675-3004694 | Msa0664030:CDS | 35.0% |
| ! | TGTTTGGAACAGTGTGATTC+AGG | - | chr4_4:3001170-3001189 | Msa0664030:CDS | 40.0% |
| TGTGATTCAGGTGATGATTC+TGG | - | chr4_4:3001182-3001201 | Msa0664030:CDS | 40.0% | |
| ACCCTTCTGATCTTTCTTCT+TGG | + | chr4_4:3001318-3001337 | None:intergenic | 40.0% | |
| CCAATCTTCAAAACAGTAGC+AGG | + | chr4_4:3001398-3001417 | None:intergenic | 40.0% | |
| !!! | CCTGCTACTGTTTTGAAGAT+TGG | - | chr4_4:3001395-3001414 | Msa0664030:CDS | 40.0% |
| TTTGAAGATTGGTACTTGGG+AGG | - | chr4_4:3001406-3001425 | Msa0664030:CDS | 40.0% | |
| TTGCGAAGCATAAGCTTGTA+TGG | - | chr4_4:3001824-3001843 | Msa0664030:intron | 40.0% | |
| TGCGAAGCATAAGCTTGTAT+GGG | - | chr4_4:3001825-3001844 | Msa0664030:intron | 40.0% | |
| CTTGTATGGGAAGTTCTTGA+TGG | - | chr4_4:3001838-3001857 | Msa0664030:intron | 40.0% | |
| TTTGGACCAGTTATGTGTCA+TGG | - | chr4_4:3002239-3002258 | Msa0664030:intron | 40.0% | |
| ATGAGTCCATGACACATAAC+TGG | + | chr4_4:3002086-3002105 | None:intergenic | 40.0% | |
| !! | TGGTGTGTATTTGTTGTAGC+TGG | - | chr4_4:3002455-3002474 | Msa0664030:CDS | 40.0% |
| !! | TGTATTTGTTGTAGCTGGCA+AGG | - | chr4_4:3002460-3002479 | Msa0664030:CDS | 40.0% |
| TTGATCTCCCTGAAAAACAG+GGG | + | chr4_4:3002489-3002508 | None:intergenic | 40.0% | |
| GATTGATCTCCCTGAAAAAC+AGG | + | chr4_4:3002491-3002510 | None:intergenic | 40.0% | |
| TCAACAACAGACTTTACTGG+TGG | - | chr4_4:3002540-3002559 | Msa0664030:CDS | 40.0% | |
| CAATCATGCACTTGAGATGA+CGG | + | chr4_4:3002611-3002630 | None:intergenic | 40.0% | |
| TCTCAAGTGCATGATTGGAA+TGG | - | chr4_4:3002614-3002633 | Msa0664030:CDS | 40.0% | |
| AAATCTGTGCACTCTTGGAT+TGG | + | chr4_4:3002743-3002762 | None:intergenic | 40.0% | |
| GGAGAATCCAACACAAATTC+CGG | + | chr4_4:3002950-3002969 | None:intergenic | 40.0% | |
| !! | GATTCTCCATACTTTGAGAC+TGG | - | chr4_4:3002962-3002981 | Msa0664030:intron | 40.0% |
| CACTCAATTCAATGTGGTCA+TGG | + | chr4_4:3002997-3003016 | None:intergenic | 40.0% | |
| GACCACATTGAATTGAGTGA+TGG | - | chr4_4:3002998-3003017 | Msa0664030:CDS | 40.0% | |
| GGTTTGGATAGAAGAAGTGA+AGG | - | chr4_4:3003019-3003038 | Msa0664030:CDS | 40.0% | |
| !! | GATTTTTGGACTGCATGATG+TGG | - | chr4_4:3003051-3003070 | Msa0664030:CDS | 40.0% |
| AGCTAGGTGAGGTAATTTCT+TGG | + | chr4_4:3003153-3003172 | None:intergenic | 40.0% | |
| TGGCAGTATGTTTGGTTGTT+TGG | - | chr4_4:3003416-3003435 | Msa0664030:intron | 40.0% | |
| TTTAGATCAACCCTCAATGC+CGG | - | chr4_4:3003457-3003476 | Msa0664030:intron | 40.0% | |
| TGCATGCAAATCTCAACCAT+TGG | + | chr4_4:3003548-3003567 | None:intergenic | 40.0% | |
| ATTTGCATGCACAGGTTCAA+CGG | - | chr4_4:3003557-3003576 | Msa0664030:intron | 40.0% | |
| ATAATCAACACTAGTGCAGC+TGG | + | chr4_4:3003730-3003749 | None:intergenic | 40.0% | |
| ATTAACCCCCATGCAATCAA+AGG | - | chr4_4:3004026-3004045 | Msa0664030:intron | 40.0% | |
| TGAAACCTTTGATTGCATGG+GGG | + | chr4_4:3004034-3004053 | None:intergenic | 40.0% | |
| CTGAAACCTTTGATTGCATG+GGG | + | chr4_4:3004035-3004054 | None:intergenic | 40.0% | |
| CCTGAAACCTTTGATTGCAT+GGG | + | chr4_4:3004036-3004055 | None:intergenic | 40.0% | |
| TCCTGAAACCTTTGATTGCA+TGG | + | chr4_4:3004037-3004056 | None:intergenic | 40.0% | |
| ! | TTGAGTCAGATTAAGTTGCC+TGG | - | chr4_4:3004092-3004111 | Msa0664030:intron | 40.0% |
| AATCATCCATCGACATCGAA+GGG | + | chr4_4:3004124-3004143 | None:intergenic | 40.0% | |
| AAATCATCCATCGACATCGA+AGG | + | chr4_4:3004125-3004144 | None:intergenic | 40.0% | |
| TTCGATGTCGATGGATGATT+TGG | - | chr4_4:3004124-3004143 | Msa0664030:intron | 40.0% | |
| TTCTGTTCATCATCAGAGAC+AGG | + | chr4_4:3004269-3004288 | None:intergenic | 40.0% | |
| ! | CAAGATGATGATGATGCTTC+TGG | - | chr4_4:3004461-3004480 | Msa0664030:intron | 40.0% |
| ! | TTTTCTGTTTCCTATGTCCG+AGG | - | chr4_4:3004571-3004590 | Msa0664030:intron | 40.0% |
| ! | AGTGGACTTGGTTCATCCAA+AGG | + | chr4_4:3001224-3001243 | None:intergenic | 45.0% |
| TTGGATGAACCAAGTCCACT+TGG | - | chr4_4:3001224-3001243 | Msa0664030:CDS | 45.0% | |
| TTCTTCAGACGCAAACCAAG+TGG | + | chr4_4:3001242-3001261 | None:intergenic | 45.0% | |
| GAAGAAGAGTCCTTCACTGT+TGG | - | chr4_4:3001256-3001275 | Msa0664030:CDS | 45.0% | |
| AGAGCCATGATATCAGACCA+TGG | + | chr4_4:3001889-3001908 | None:intergenic | 45.0% | |
| GTCTGATATCATGGCTCTCA+AGG | - | chr4_4:3001891-3001910 | Msa0664030:intron | 45.0% | |
| !! | ATTTGTTGTAGCTGGCAAGG+AGG | - | chr4_4:3002463-3002482 | Msa0664030:CDS | 45.0% |
| AAGGTATGCTTCCTTGGTTG+TGG | + | chr4_4:3002513-3002532 | None:intergenic | 45.0% | |
| ! | AACCAAGGAAGCATACCTTG+TGG | - | chr4_4:3002514-3002533 | Msa0664030:CDS | 45.0% |
| ! | GTCTGTTGTTGATTGCCACA+AGG | + | chr4_4:3002532-3002551 | None:intergenic | 45.0% |
| CGTCATCTCAAGTGCATGAT+TGG | - | chr4_4:3002609-3002628 | Msa0664030:CDS | 45.0% | |
| CAAGTGCATGATTGGAATGG+CGG | - | chr4_4:3002617-3002636 | Msa0664030:CDS | 45.0% | |
| AATGCCCTCAAGGTCTGTTA+GGG | - | chr4_4:3002867-3002886 | Msa0664030:intron | 45.0% | |
| TTGGCTCAGAAAGTTGAGAC+GGG | + | chr4_4:3002924-3002943 | None:intergenic | 45.0% | |
| ! | GTTGGCTCAGAAAGTTGAGA+CGG | + | chr4_4:3002925-3002944 | None:intergenic | 45.0% |
| CAACTTTCTGAGCCAACAAC+CGG | - | chr4_4:3002928-3002947 | Msa0664030:intron | 45.0% | |
| CCAACACAAATTCCGGTTGT+TGG | + | chr4_4:3002943-3002962 | None:intergenic | 45.0% | |
| CCAACAACCGGAATTTGTGT+TGG | - | chr4_4:3002940-3002959 | Msa0664030:intron | 45.0% | |
| GCAGTTCCAGTCTCAAAGTA+TGG | + | chr4_4:3002971-3002990 | None:intergenic | 45.0% | |
| AGAAGAAGTGAAGGGAAAGC+TGG | - | chr4_4:3003028-3003047 | Msa0664030:CDS | 45.0% | |
| GAAGAAGTGAAGGGAAAGCT+GGG | - | chr4_4:3003029-3003048 | Msa0664030:CDS | 45.0% | |
| ! | GAAGGGAAAGCTGGGATTTT+TGG | - | chr4_4:3003037-3003056 | Msa0664030:CDS | 45.0% |
| GACTGCATGATGTGGAATCA+GGG | - | chr4_4:3003059-3003078 | Msa0664030:CDS | 45.0% | |
| GAAATTACCTCACCTAGCTC+AGG | - | chr4_4:3003154-3003173 | Msa0664030:intron | 45.0% | |
| CCATAGGAATTACCTGAGCT+AGG | + | chr4_4:3003169-3003188 | None:intergenic | 45.0% | |
| CCTAGCTCAGGTAATTCCTA+TGG | - | chr4_4:3003166-3003185 | Msa0664030:intron | 45.0% | |
| TACAGTTTCACCGACCATTC+AGG | + | chr4_4:3003363-3003382 | None:intergenic | 45.0% | |
| TGGTTGAGATTTGCATGCAC+AGG | - | chr4_4:3003549-3003568 | Msa0664030:intron | 45.0% | |
| ATTAATCTGCAATCCGGGTG+AGG | - | chr4_4:3003595-3003614 | Msa0664030:intron | 45.0% | |
| TTAATCTGCAATCCGGGTGA+GGG | - | chr4_4:3003596-3003615 | Msa0664030:intron | 45.0% | |
| CCCATGCAATCAAAGGTTTC+AGG | - | chr4_4:3004033-3004052 | Msa0664030:intron | 45.0% | |
| ATCAAAGGTTTCAGGAGCAG+AGG | - | chr4_4:3004041-3004060 | Msa0664030:intron | 45.0% | |
| ACACTGCATTTCGGAACAGA+TGG | - | chr4_4:3004160-3004179 | Msa0664030:CDS | 45.0% | |
| CACTGCATTTCGGAACAGAT+GGG | - | chr4_4:3004161-3004180 | Msa0664030:CDS | 45.0% | |
| AGCTCTGTCATTAGTGAAGC+TGG | + | chr4_4:3004198-3004217 | None:intergenic | 45.0% | |
| CACTAATGACAGAGCTGTGT+TGG | - | chr4_4:3004202-3004221 | Msa0664030:CDS | 45.0% | |
| TAATGACAGAGCTGTGTTGG+AGG | - | chr4_4:3004205-3004224 | Msa0664030:CDS | 45.0% | |
| TGTTCATCATCAGAGACAGG+TGG | + | chr4_4:3004266-3004285 | None:intergenic | 45.0% | |
| AGCAAGGAAATGGTCTGTCT+AGG | - | chr4_4:3004492-3004511 | Msa0664030:intron | 45.0% | |
| CTGTCTAGGAAAGAATCAGC+TGG | - | chr4_4:3004506-3004525 | Msa0664030:intron | 45.0% | |
| CTATCAGAATCCTCGGACAT+AGG | + | chr4_4:3004584-3004603 | None:intergenic | 45.0% | |
| !!! | ATAAATTTTTTAATTTATTG+TGG | - | chr4_4:3003684-3003703 | Msa0664030:CDS | 5.0% |
| ! | AGACGCAAACCAAGTGGACT+TGG | + | chr4_4:3001236-3001255 | None:intergenic | 50.0% |
| TGCTGCTGATAGCAAGCTCA+AGG | - | chr4_4:3001361-3001380 | Msa0664030:CDS | 50.0% | |
| TCTCAAGGCAAACTACCCTG+AGG | - | chr4_4:3001906-3001925 | Msa0664030:intron | 50.0% | |
| ! | ATGTTCCTGGAGCATCCTCA+GGG | + | chr4_4:3001924-3001943 | None:intergenic | 50.0% |
| ! | AATGTTCCTGGAGCATCCTC+AGG | + | chr4_4:3001925-3001944 | None:intergenic | 50.0% |
| TGAGGATGCTCCAGGAACAT+TGG | - | chr4_4:3001924-3001943 | Msa0664030:intron | 50.0% | |
| !! | AAGGAGGCCCCTGTTTTTCA+GGG | - | chr4_4:3002479-3002498 | Msa0664030:CDS | 50.0% |
| GGGAGATCAATCCACAACCA+AGG | - | chr4_4:3002499-3002518 | Msa0664030:CDS | 50.0% | |
| TGCCACAAGGTATGCTTCCT+TGG | + | chr4_4:3002519-3002538 | None:intergenic | 50.0% | |
| GTGGACAAGCCAGCATACAT+AGG | - | chr4_4:3002559-3002578 | Msa0664030:CDS | 50.0% | |
| !! | CTTGAGGGCATTGCACAAAG+TGG | + | chr4_4:3002859-3002878 | None:intergenic | 50.0% |
| CACTTTGTGCAATGCCCTCA+AGG | - | chr4_4:3002857-3002876 | Msa0664030:intron | 50.0% | |
| CAATGCCCTCAAGGTCTGTT+AGG | - | chr4_4:3002866-3002885 | Msa0664030:intron | 50.0% | |
| TGGCTCAGAAAGTTGAGACG+GGG | + | chr4_4:3002923-3002942 | None:intergenic | 50.0% | |
| GGACTGCATGATGTGGAATC+AGG | - | chr4_4:3003058-3003077 | Msa0664030:CDS | 50.0% | |
| CATGATGTGGAATCAGGGTC+TGG | - | chr4_4:3003064-3003083 | Msa0664030:intron | 50.0% | |
| GGAATTACCTGAGCTAGGTG+AGG | + | chr4_4:3003164-3003183 | None:intergenic | 50.0% | |
| !! | ATTTGGCTGCACCGGCTATA+TGG | + | chr4_4:3003494-3003513 | None:intergenic | 50.0% |
| CACAGGTTCAACGGTTGTAG+AGG | - | chr4_4:3003566-3003585 | Msa0664030:intron | 50.0% | |
| TAAAACTTCCCTCCCTCACC+CGG | + | chr4_4:3003611-3003630 | None:intergenic | 50.0% | |
| TCTTCACCCTTCGATGTCGA+TGG | - | chr4_4:3004115-3004134 | Msa0664030:intron | 50.0% | |
| CCACATCGGACACTGCATTT+CGG | - | chr4_4:3004151-3004170 | Msa0664030:CDS | 50.0% | |
| ! | CAGGAGGGTCTTTCTGAAGA+AGG | + | chr4_4:3004322-3004341 | None:intergenic | 50.0% |
| ! | GTTTTTCTTCGGGTGCAGGA+GGG | + | chr4_4:3004337-3004356 | None:intergenic | 50.0% |
| ! | TGTTTTTCTTCGGGTGCAGG+AGG | + | chr4_4:3004338-3004357 | None:intergenic | 50.0% |
| TCCTGCACCCGAAGAAAAAC+AGG | - | chr4_4:3004337-3004356 | Msa0664030:CDS | 50.0% | |
| !! | ACCTGTTTTTCTTCGGGTGC+AGG | + | chr4_4:3004341-3004360 | None:intergenic | 50.0% |
| ACAGACCATTTCCTTGCTGC+TGG | + | chr4_4:3004490-3004509 | None:intergenic | 50.0% | |
| TGTGGCAGAGAAGCAATCCT+TGG | + | chr4_4:3004551-3004570 | None:intergenic | 50.0% | |
| AACTACCCTGAGGATGCTCC+AGG | - | chr4_4:3001916-3001935 | Msa0664030:intron | 55.0% | |
| !! | CAAGGAGGCCCCTGTTTTTC+AGG | - | chr4_4:3002478-3002497 | Msa0664030:CDS | 55.0% |
| GCCTCCCTAACAGACCTTGA+GGG | + | chr4_4:3002874-3002893 | None:intergenic | 55.0% | |
| TGCCTCCCTAACAGACCTTG+AGG | + | chr4_4:3002875-3002894 | None:intergenic | 55.0% | |
| AACCCTCAATGCCGGATCCT+CGG | - | chr4_4:3003465-3003484 | Msa0664030:intron | 55.0% | |
| CTATATGGCTGCCGAGGATC+CGG | + | chr4_4:3003479-3003498 | None:intergenic | 55.0% | |
| ATCCTCGGCAGCCATATAGC+CGG | - | chr4_4:3003480-3003499 | Msa0664030:intron | 55.0% | |
| TGGTCGAGATTTGGCTGCAC+CGG | + | chr4_4:3003502-3003521 | None:intergenic | 55.0% | |
| GACATCGAAGGGTGAAGACC+AGG | + | chr4_4:3004113-3004132 | None:intergenic | 55.0% | |
| CCGAAATGCAGTGTCCGATG+TGG | + | chr4_4:3004154-3004173 | None:intergenic | 55.0% | |
| GGTAGCCAGCAGCAAGGAAA+TGG | - | chr4_4:3004482-3004501 | Msa0664030:intron | 55.0% | |
| GCCCTCAAGGTCTGTTAGGG+AGG | - | chr4_4:3002870-3002889 | Msa0664030:intron | 60.0% | |
| ! | TGCCGAGGATCCGGCATTGA+GGG | + | chr4_4:3003470-3003489 | None:intergenic | 60.0% |
| ATCTGCAATCCGGGTGAGGG+AGG | - | chr4_4:3003599-3003618 | Msa0664030:intron | 60.0% | |
| TCTGCAATCCGGGTGAGGGA+GGG | - | chr4_4:3003600-3003619 | Msa0664030:CDS | 60.0% | |
| GCTTCTGGTAGCCAGCAGCA+AGG | - | chr4_4:3004476-3004495 | Msa0664030:intron | 60.0% | |
| CTGCCGAGGATCCGGCATTG+AGG | + | chr4_4:3003471-3003490 | None:intergenic | 65.0% | |
| ! | CACCGGCTATATGGCTGCCG+AGG | + | chr4_4:3003485-3003504 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 3000690 | 3004864 | 3000690 | ID=Msa0664030;Name=Msa0664030 |
| chr4_4 | mRNA | 3000690 | 3004864 | 3000690 | ID=Msa0664030-mRNA-1;Parent=Msa0664030;Name=Msa0664030-mRNA-1;_AED=0.04;_eAED=0.04;_QI=116|1|1|1|1|1|6|248|525 |
| chr4_4 | exon | 3000690 | 3001530 | 3000690 | ID=Msa0664030-mRNA-1:exon:894;Parent=Msa0664030-mRNA-1 |
| chr4_4 | exon | 3002379 | 3002701 | 3002379 | ID=Msa0664030-mRNA-1:exon:893;Parent=Msa0664030-mRNA-1 |
| chr4_4 | exon | 3002974 | 3003080 | 3002974 | ID=Msa0664030-mRNA-1:exon:892;Parent=Msa0664030-mRNA-1 |
| chr4_4 | exon | 3003600 | 3003773 | 3003600 | ID=Msa0664030-mRNA-1:exon:891;Parent=Msa0664030-mRNA-1 |
| chr4_4 | exon | 3004127 | 3004372 | 3004127 | ID=Msa0664030-mRNA-1:exon:890;Parent=Msa0664030-mRNA-1 |
| chr4_4 | exon | 3004614 | 3004864 | 3004614 | ID=Msa0664030-mRNA-1:exon:889;Parent=Msa0664030-mRNA-1 |
| chr4_4 | five_prime_UTR | 3004749 | 3004864 | 3004749 | ID=Msa0664030-mRNA-1:five_prime_utr;Parent=Msa0664030-mRNA-1 |
| chr4_4 | CDS | 3004614 | 3004748 | 3004614 | ID=Msa0664030-mRNA-1:cds;Parent=Msa0664030-mRNA-1 |
| chr4_4 | CDS | 3004127 | 3004372 | 3004127 | ID=Msa0664030-mRNA-1:cds;Parent=Msa0664030-mRNA-1 |
| chr4_4 | CDS | 3003600 | 3003773 | 3003600 | ID=Msa0664030-mRNA-1:cds;Parent=Msa0664030-mRNA-1 |
| chr4_4 | CDS | 3002974 | 3003080 | 3002974 | ID=Msa0664030-mRNA-1:cds;Parent=Msa0664030-mRNA-1 |
| chr4_4 | CDS | 3002379 | 3002701 | 3002379 | ID=Msa0664030-mRNA-1:cds;Parent=Msa0664030-mRNA-1 |
| chr4_4 | CDS | 3000938 | 3001530 | 3000938 | ID=Msa0664030-mRNA-1:cds;Parent=Msa0664030-mRNA-1 |
| chr4_4 | three_prime_UTR | 3000690 | 3000937 | 3000690 | ID=Msa0664030-mRNA-1:three_prime_utr;Parent=Msa0664030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
