Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626180 | XP_013454547.1 | 95.472 | 530 | 14 | 4 | 1 | 525 | 1 | 525 | 0.0 | 1025 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626180 | A0A072UHH6 | 95.472 | 530 | 14 | 4 | 1 | 525 | 1 | 525 | 0.0 | 1025 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0611320 | Msa0626180 | 0.805734 | 1.157106e-49 | -8.615850e-47 |
| Msa0626180 | Msa0652700 | 0.807311 | 5.377001e-50 | -8.615850e-47 |
| Msa0626180 | Msa0663320 | 0.932625 | 6.425990e-95 | -8.615850e-47 |
| Msa0626180 | Msa0664030 | 0.932643 | 6.257665e-95 | -8.615850e-47 |
| Msa0626180 | Msa0945230 | 0.805321 | 1.412151e-49 | -8.615850e-47 |
| Msa0626180 | Msa1219790 | 0.810423 | 1.161416e-50 | -8.615850e-47 |
| Msa0626180 | Msa1267080 | 0.816186 | 6.296233e-52 | -8.615850e-47 |
| Msa0626180 | Msa1401550 | 0.824035 | 1.003817e-53 | -8.615850e-47 |
| Msa0626180 | Msa1443220 | 0.804716 | 1.889991e-49 | -8.615850e-47 |
| Msa0480770 | Msa0626180 | 0.804967 | 1.674761e-49 | -8.615850e-47 |
| Msa0268070 | Msa0626180 | 0.808108 | 3.641813e-50 | -8.615850e-47 |
| Msa0527880 | Msa0626180 | 0.812704 | 3.708770e-51 | -8.615850e-47 |
| Msa0577640 | Msa0626180 | 0.802354 | 5.839037e-49 | -8.615850e-47 |
| Msa0577730 | Msa0626180 | 0.823554 | 1.301321e-53 | -8.615850e-47 |
| Msa0586160 | Msa0626180 | 0.991326 | 4.638951e-187 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626180 | MtrunA17_Chr4g0001981 | 95.472 | 530 | 14 | 4 | 1 | 525 | 1 | 525 | 0.0 | 1025 |
| Msa0626180 | MtrunA17_Chr4g0073561 | 49.786 | 468 | 205 | 9 | 60 | 519 | 51 | 496 | 7.45e-136 | 402 |
| Msa0626180 | MtrunA17_Chr1g0192751 | 44.737 | 190 | 96 | 3 | 65 | 253 | 42 | 223 | 4.00e-44 | 160 |
| Msa0626180 | MtrunA17_Chr6g0453721 | 38.049 | 205 | 109 | 5 | 60 | 262 | 1 | 189 | 3.94e-34 | 128 |
| Msa0626180 | MtrunA17_Chr6g0453841 | 34.091 | 220 | 112 | 6 | 60 | 262 | 1 | 204 | 1.37e-26 | 108 |
| Msa0626180 | MtrunA17_Chr4g0073591 | 65.217 | 69 | 24 | 0 | 126 | 194 | 14 | 82 | 1.13e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0626180 | AT2G24100.1 | 44.906 | 530 | 216 | 13 | 1 | 519 | 1 | 465 | 6.64e-130 | 387 |
| Msa0626180 | AT4G30780.1 | 50.398 | 377 | 150 | 7 | 17 | 370 | 26 | 388 | 3.72e-112 | 345 |
| Msa0626180 | AT4G30780.1 | 35.429 | 175 | 92 | 7 | 354 | 525 | 433 | 589 | 1.62e-13 | 73.6 |
| Msa0626180 | AT3G05770.2 | 40.000 | 215 | 119 | 4 | 60 | 265 | 20 | 233 | 9.59e-37 | 140 |
| Msa0626180 | AT3G05770.1 | 40.000 | 215 | 119 | 4 | 60 | 265 | 20 | 233 | 1.35e-36 | 140 |
| Msa0626180 | AT1G54300.1 | 42.500 | 160 | 82 | 4 | 115 | 265 | 2 | 160 | 3.40e-29 | 117 |
Find 130 sgRNAs with CRISPR-Local
Find 252 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGTTGAAATCGAATT+TGG | 0.132685 | 4_3:-5538235 | None:intergenic |
| ACCCTTCTGATCTTTCTTCT+TGG | 0.228703 | 4_3:-5538641 | None:intergenic |
| CAAGAGTAAAATGTTTGATT+TGG | 0.243000 | 4_3:+5541750 | Msa0626180:CDS |
| CTGAGAAACTTATCAGATTC+AGG | 0.259989 | 4_3:-5541385 | None:intergenic |
| TTTGTTGTCTTGTTTATAAC+TGG | 0.269895 | 4_3:-5542088 | None:intergenic |
| CAGAAGTGAACAAAATCTTA+TGG | 0.288359 | 4_3:+5540426 | Msa0626180:CDS |
| TTCTTCACAATTATCAACTA+TGG | 0.296994 | 4_3:+5538113 | Msa0626180:exon |
| CCCATGCAATCAAAGGTTTC+AGG | 0.301138 | 4_3:+5541353 | Msa0626180:CDS |
| TGTTTGGAACAGTGTGATTC+AGG | 0.311820 | 4_3:+5538496 | Msa0626180:intron |
| CAATGCCCTCAAGGTCTGTT+AGG | 0.323271 | 4_3:+5540187 | Msa0626180:CDS |
| AAGAGTAAAATGTTTGATTT+GGG | 0.335503 | 4_3:+5541751 | Msa0626180:CDS |
| TTCGATGTCGATGGATGATT+TGG | 0.335720 | 4_3:+5541444 | Msa0626180:CDS |
| GGACTGCATGATGTGGAATC+AGG | 0.352036 | 4_3:+5540379 | Msa0626180:CDS |
| AGCTAGGTGAGGTAATTTCT+TGG | 0.354560 | 4_3:-5540471 | None:intergenic |
| AGAAGAAGTGAAGGGAAAGC+TGG | 0.361169 | 4_3:+5540349 | Msa0626180:CDS |
| CATTGAATTGAGTGATGGTT+TGG | 0.363177 | 4_3:+5540324 | Msa0626180:CDS |
| ACAATAACTTCCAATGTTCC+TGG | 0.363801 | 4_3:-5539255 | None:intergenic |
| TCCGATTTCATACAATCCTT+TGG | 0.368995 | 4_3:+5538531 | Msa0626180:CDS |
| TTGCGAAGCATAAGCTTGTA+TGG | 0.377568 | 4_3:+5539145 | Msa0626180:CDS |
| GTCTAGATATGAAGGAGATT+TGG | 0.382647 | 4_3:+5539107 | Msa0626180:CDS |
| TGCCACAAGGTATGCTTCCT+TGG | 0.393612 | 4_3:-5539837 | None:intergenic |
| TCCTGAAACCTTTGATTGCA+TGG | 0.393638 | 4_3:-5541354 | None:intergenic |
| TCCAAAGGATTGTATGAAAT+CGG | 0.396620 | 4_3:-5538532 | None:intergenic |
| TTTCTGAAGAAGGCAGTATA+AGG | 0.405521 | 4_3:-5541629 | None:intergenic |
| CAATCAACAACAGACTTTAC+TGG | 0.408931 | 4_3:+5539858 | Msa0626180:CDS |
| GGAGAATCCAACACAAATTC+CGG | 0.411628 | 4_3:-5540268 | None:intergenic |
| CCACATCGGACACTGCATTT+CGG | 0.412120 | 4_3:+5541471 | Msa0626180:CDS |
| GCAGTTCCAGTCTCAAAGTA+TGG | 0.416139 | 4_3:-5540289 | None:intergenic |
| CAAGATGATGATGATGCTTC+TGG | 0.418720 | 4_3:+5541781 | Msa0626180:CDS |
| TCAGAGTTGAAATCGAATTT+GGG | 0.419622 | 4_3:-5538234 | None:intergenic |
| CTATCAGAATCCTCGGACAT+AGG | 0.423015 | 4_3:-5541901 | None:intergenic |
| CCTGAAACCTTTGATTGCAT+GGG | 0.423667 | 4_3:-5541353 | None:intergenic |
| GTCTTGTTTATAACTGGAAA+TGG | 0.425377 | 4_3:-5542082 | None:intergenic |
| TGTGATTCAGGTGATGATTC+TGG | 0.430308 | 4_3:+5538508 | Msa0626180:CDS |
| CTTGTATGGGAAGTTCTTGA+TGG | 0.433138 | 4_3:+5539159 | Msa0626180:CDS |
| AATGTTCCTGGAGCATCCTC+AGG | 0.433779 | 4_3:-5539243 | None:intergenic |
| CCAACACAAATTCCGGTTGT+TGG | 0.433853 | 4_3:-5540261 | None:intergenic |
| GGTAGCCAGCAGCAAGGAAA+TGG | 0.434094 | 4_3:+5541802 | Msa0626180:CDS |
| AAGGTATGCTTCCTTGGTTG+TGG | 0.434236 | 4_3:-5539831 | None:intergenic |
| GTTGGTTACTTAAGCTCAAT+GGG | 0.435748 | 4_3:+5542015 | Msa0626180:three_prime_UTR |
| AGCTCTGTCATTAGTGAAGC+TGG | 0.450625 | 4_3:-5541515 | None:intergenic |
| AGAAGTGAACAAAATCTTAT+GGG | 0.452591 | 4_3:+5540427 | Msa0626180:CDS |
| AGTTGGTTACTTAAGCTCAA+TGG | 0.455678 | 4_3:+5542014 | Msa0626180:three_prime_UTR |
| CAACTTTCTGAGCCAACAAC+CGG | 0.458040 | 4_3:+5540249 | Msa0626180:CDS |
| CTGAAACCTTTGATTGCATG+GGG | 0.466395 | 4_3:-5541352 | None:intergenic |
| GATTCTCCATACTTTGAGAC+TGG | 0.468589 | 4_3:+5540283 | Msa0626180:CDS |
| TTATTTATACCTATGTATGC+TGG | 0.472570 | 4_3:-5539889 | None:intergenic |
| GAAGAAGTGAAGGGAAAGCT+GGG | 0.473769 | 4_3:+5540350 | Msa0626180:CDS |
| CACTTTGTGCAATGCCCTCA+AGG | 0.479139 | 4_3:+5540178 | Msa0626180:CDS |
| ACAGACCATTTCCTTGCTGC+TGG | 0.483280 | 4_3:-5541807 | None:intergenic |
| CACTAATGACAGAGCTGTGT+TGG | 0.483298 | 4_3:+5541522 | Msa0626180:CDS |
| GAAGAAGAGTCCTTCACTGT+TGG | 0.484620 | 4_3:+5538582 | Msa0626180:CDS |
| AATTCCATGGTCTGATATCA+TGG | 0.485625 | 4_3:+5539203 | Msa0626180:CDS |
| CCAATCTTCAAAACAGTAGC+AGG | 0.487934 | 4_3:-5538721 | None:intergenic |
| TTTCAACTCTGATTCTCCTA+AGG | 0.489774 | 4_3:+5538245 | Msa0626180:CDS |
| CCAACAACCGGAATTTGTGT+TGG | 0.491090 | 4_3:+5540261 | Msa0626180:CDS |
| TTGAGTCAGATTAAGTTGCC+TGG | 0.498526 | 4_3:+5541412 | Msa0626180:CDS |
| AGACGCAAACCAAGTGGACT+TGG | 0.503986 | 4_3:-5538559 | None:intergenic |
| TCTTCACCCTTCGATGTCGA+TGG | 0.504190 | 4_3:+5541435 | Msa0626180:CDS |
| CAGTATAAGTCTAGATATGA+AGG | 0.517526 | 4_3:+5539099 | Msa0626180:intron |
| ATTTGCTTCTGAATCTTCCA+AGG | 0.519721 | 4_3:+5541851 | Msa0626180:CDS |
| CACTCAATTCAATGTGGTCA+TGG | 0.523533 | 4_3:-5540315 | None:intergenic |
| TGTGGCAGAGAAGCAATCCT+TGG | 0.523882 | 4_3:-5541868 | None:intergenic |
| GAAATTACCTCACCTAGCTC+AGG | 0.524612 | 4_3:+5540475 | Msa0626180:CDS |
| TGAGGATGCTCCAGGAACAT+TGG | 0.526671 | 4_3:+5539245 | Msa0626180:CDS |
| GAAATGGAAAATATCACGGT+TGG | 0.526672 | 4_3:-5542066 | None:intergenic |
| GTCTGATATCATGGCTCTCA+AGG | 0.526777 | 4_3:+5539212 | Msa0626180:CDS |
| TAATGACAGAGCTGTGTTGG+AGG | 0.526990 | 4_3:+5541525 | Msa0626180:CDS |
| CATGATGTGGAATCAGGGTC+TGG | 0.530089 | 4_3:+5540385 | Msa0626180:CDS |
| AGAATAAGATTGAAATTCCA+TGG | 0.535046 | 4_3:+5539190 | Msa0626180:CDS |
| TTGGATGAACCAAGTCCACT+TGG | 0.535980 | 4_3:+5538550 | Msa0626180:CDS |
| TTCTGTTCATCATCAGAGAC+AGG | 0.536856 | 4_3:-5541586 | None:intergenic |
| GACATCGAAGGGTGAAGACC+AGG | 0.537780 | 4_3:-5541430 | None:intergenic |
| TGCGAAAGACTACAATAAAG+AGG | 0.539321 | 4_3:-5541970 | None:intergenic |
| TGCTGCTGATAGCAAGCTCA+AGG | 0.539666 | 4_3:+5538687 | Msa0626180:CDS |
| TTGGCTCAGAAAGTTGAGAC+GGG | 0.539829 | 4_3:-5540242 | None:intergenic |
| CTGTCTAGGAAAGAATCAGC+TGG | 0.542082 | 4_3:+5541826 | Msa0626180:CDS |
| AACTACCCTGAGGATGCTCC+AGG | 0.542158 | 4_3:+5539237 | Msa0626180:CDS |
| GCCTCCCTAACAGACCTTGA+GGG | 0.542641 | 4_3:-5540192 | None:intergenic |
| ACACTGCATTTCGGAACAGA+TGG | 0.543363 | 4_3:+5541480 | Msa0626180:CDS |
| AATGCCCTCAAGGTCTGTTA+GGG | 0.546969 | 4_3:+5540188 | Msa0626180:CDS |
| TGTATTTGTTGTAGCTGGCA+AGG | 0.547557 | 4_3:+5539781 | Msa0626180:intron |
| TGCGAAGCATAAGCTTGTAT+GGG | 0.558386 | 4_3:+5539146 | Msa0626180:CDS |
| GCTGGACATCGTAGAAAAGC+AGG | 0.559213 | 4_3:+5538013 | None:intergenic |
| TTCCAAGAAGAAAGATCAGA+AGG | 0.560722 | 4_3:+5538639 | Msa0626180:CDS |
| GCCCTCAAGGTCTGTTAGGG+AGG | 0.562789 | 4_3:+5540191 | Msa0626180:CDS |
| GGTTTGGATAGAAGAAGTGA+AGG | 0.566531 | 4_3:+5540340 | Msa0626180:CDS |
| GAGAAGGGTCTTTCTGAAGA+AGG | 0.568373 | 4_3:-5541639 | None:intergenic |
| AACATGACTATCAGAATCCT+CGG | 0.577952 | 4_3:-5541908 | None:intergenic |
| CACTGCATTTCGGAACAGAT+GGG | 0.578013 | 4_3:+5541481 | Msa0626180:CDS |
| TAGATATGAAGGAGATTTGG+TGG | 0.584423 | 4_3:+5539110 | Msa0626180:CDS |
| TGCCTCCCTAACAGACCTTG+AGG | 0.584503 | 4_3:-5540193 | None:intergenic |
| GTGGACAAGCCAGCATACAT+AGG | 0.584639 | 4_3:+5539880 | Msa0626180:CDS |
| AGCAAGGAAATGGTCTGTCT+AGG | 0.585074 | 4_3:+5541812 | Msa0626180:CDS |
| AAATCATCCATCGACATCGA+AGG | 0.585590 | 4_3:-5541442 | None:intergenic |
| AGTGGACTTGGTTCATCCAA+AGG | 0.586408 | 4_3:-5538547 | None:intergenic |
| CCATAGGAATTACCTGAGCT+AGG | 0.591916 | 4_3:-5540487 | None:intergenic |
| TTCTTCAGACGCAAACCAAG+TGG | 0.595315 | 4_3:-5538565 | None:intergenic |
| ATCAAAGGTTTCAGGAGCAG+AGG | 0.596879 | 4_3:+5541361 | Msa0626180:CDS |
| GACTGCATGATGTGGAATCA+GGG | 0.597635 | 4_3:+5540380 | Msa0626180:CDS |
| GACATAGGAAACAGAAAATG+TGG | 0.600386 | 4_3:-5541886 | None:intergenic |
| TGAATCAAATCCAACAGTGA+AGG | 0.602378 | 4_3:-5538592 | None:intergenic |
| GTTGGCTCAGAAAGTTGAGA+CGG | 0.604139 | 4_3:-5540243 | None:intergenic |
| GAAGATAGAAAAGTTGATGA+GGG | 0.606665 | 4_3:+5541712 | Msa0626180:CDS |
| TTTGAAGATTGGTACTTGGG+AGG | 0.609526 | 4_3:+5538732 | Msa0626180:CDS |
| GACCACATTGAATTGAGTGA+TGG | 0.611625 | 4_3:+5540319 | Msa0626180:CDS |
| TGAAGATAGAAAAGTTGATG+AGG | 0.612436 | 4_3:+5541711 | Msa0626180:CDS |
| ACTGGAAATGGAAAATATCA+CGG | 0.613745 | 4_3:-5542070 | None:intergenic |
| AATCATCCATCGACATCGAA+GGG | 0.616354 | 4_3:-5541441 | None:intergenic |
| GTCTGTTGTTGATTGCCACA+AGG | 0.622596 | 4_3:-5539850 | None:intergenic |
| CTTGAGGGCATTGCACAAAG+TGG | 0.635048 | 4_3:-5540177 | None:intergenic |
| TCAACAACAGACTTTACTGG+TGG | 0.640598 | 4_3:+5539861 | Msa0626180:CDS |
| ATGTTCCTGGAGCATCCTCA+GGG | 0.646838 | 4_3:-5539242 | None:intergenic |
| GTTTGGATAGAAGAAGTGAA+GGG | 0.651890 | 4_3:+5540341 | Msa0626180:CDS |
| TCCAAGAAGAAAGATCAGAA+GGG | 0.651999 | 4_3:+5538640 | Msa0626180:CDS |
| TGTTCATCATCAGAGACAGG+TGG | 0.655949 | 4_3:-5541583 | None:intergenic |
| ATTTGTTGTAGCTGGCAAGG+AGG | 0.658694 | 4_3:+5539784 | Msa0626180:intron |
| GGGAGATCAATCCACAACCA+AGG | 0.673080 | 4_3:+5539820 | Msa0626180:CDS |
| GCTTCTGGTAGCCAGCAGCA+AGG | 0.673116 | 4_3:+5541796 | Msa0626180:CDS |
| ATGAACAGAATGTCATGACA+AGG | 0.678824 | 4_3:+5541599 | Msa0626180:CDS |
| GGAATTACCTGAGCTAGGTG+AGG | 0.680636 | 4_3:-5540482 | None:intergenic |
| TGGCTCAGAAAGTTGAGACG+GGG | 0.681167 | 4_3:-5540241 | None:intergenic |
| GATGATTTGGTTAACCACAT+CGG | 0.685792 | 4_3:+5541457 | Msa0626180:CDS |
| AGAGCCATGATATCAGACCA+TGG | 0.692062 | 4_3:-5539207 | None:intergenic |
| TGAAACCTTTGATTGCATGG+GGG | 0.696180 | 4_3:-5541351 | None:intergenic |
| CCGAAATGCAGTGTCCGATG+TGG | 0.700782 | 4_3:-5541471 | None:intergenic |
| AACCATCACTCAATTCAATG+TGG | 0.718712 | 4_3:-5540321 | None:intergenic |
| TCTCAAGGCAAACTACCCTG+AGG | 0.745164 | 4_3:+5539227 | Msa0626180:CDS |
| TGAACAGAATGTCATGACAA+GGG | 0.758366 | 4_3:+5541600 | Msa0626180:CDS |
| AACCAAGGAAGCATACCTTG+TGG | 0.758682 | 4_3:+5539835 | Msa0626180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGTTAATTTCATAT+TGG | + | chr4_3:5538392-5538411 | Msa0626180:intron | 10.0% |
| !!! | TTTTTTGTTAATTTCATATT+GGG | + | chr4_3:5538393-5538412 | Msa0626180:intron | 10.0% |
| !!! | TTTTATACATTGTTTTAATT+TGG | + | chr4_3:5540517-5540536 | Msa0626180:intron | 10.0% |
| !!! | TTTTAATTTCAAATTTATCA+TGG | + | chr4_3:5540633-5540652 | Msa0626180:intron | 10.0% |
| !!! | GTTTAATTTTCAGTTTATTA+TGG | + | chr4_3:5538418-5538437 | Msa0626180:intron | 15.0% |
| !! | ATAAGTTATTTATCAAAACA+GGG | - | chr4_3:5538824-5538843 | None:intergenic | 15.0% |
| !! | AATAAGTTATTTATCAAAAC+AGG | - | chr4_3:5538825-5538844 | None:intergenic | 15.0% |
| !!! | TTTTATTGCTTAATAGATTT+TGG | + | chr4_3:5539488-5539507 | Msa0626180:intron | 15.0% |
| !!! | TTTTATTGCTTAATAGATTT+TGG | + | chr4_3:5539488-5539507 | Msa0626180:intron | 15.0% |
| !! | TGTATAAAAAAAATATCCAT+AGG | - | chr4_3:5540506-5540525 | None:intergenic | 15.0% |
| !! | AGAGGAATAATATTATAAAA+TGG | - | chr4_3:5541133-5541152 | None:intergenic | 15.0% |
| !! | TAATCATTAGCATTATATAA+TGG | + | chr4_3:5541189-5541208 | Msa0626180:intron | 15.0% |
| !!! | ATATGGAATTATATCATTTT+CGG | - | chr4_3:5541307-5541326 | None:intergenic | 15.0% |
| !!! | ATTGTGTTTTTTTGTTTGTT+TGG | + | chr4_3:5538480-5538499 | Msa0626180:intron | 20.0% |
| !! | TTTGTTTGTAGAAATAATGA+AGG | + | chr4_3:5538798-5538817 | Msa0626180:intron | 20.0% |
| !!! | TTTTAATCATTTATGTGTCA+TGG | + | chr4_3:5539333-5539352 | Msa0626180:intron | 20.0% |
| !!! | TTTTATTGCTTACTAGATTT+TGG | + | chr4_3:5539380-5539399 | Msa0626180:intron | 20.0% |
| !!! | TTTTATTGCTGAATAGATTT+TGG | + | chr4_3:5539434-5539453 | Msa0626180:intron | 20.0% |
| !! | AAATAGCATATTGCAAAATA+TGG | - | chr4_3:5539653-5539672 | None:intergenic | 20.0% |
| !!! | TTAGTTGTTTTCAATTCATT+TGG | + | chr4_3:5540092-5540111 | Msa0626180:intron | 20.0% |
| !!! | ATTCTGTATTTTGTTGTTAT+AGG | + | chr4_3:5540152-5540171 | Msa0626180:intron | 20.0% |
| !! | TATCTCAAGAAATACAAAAA+AGG | - | chr4_3:5540570-5540589 | None:intergenic | 20.0% |
| !!! | ATCTTTTAAATTTTCCTGAA+TGG | + | chr4_3:5540669-5540688 | Msa0626180:intron | 20.0% |
| !! | AATTTAATCATTTGATACTC+TGG | - | chr4_3:5540720-5540739 | None:intergenic | 20.0% |
| !!! | AGAGTATCAAATGATTAAAT+TGG | + | chr4_3:5540719-5540738 | Msa0626180:intron | 20.0% |
| !! | TAATTTATTGTGGATATCTA+CGG | + | chr4_3:5541014-5541033 | Msa0626180:intron | 20.0% |
| !!! | TGTTGATTATGTTTTTGTTA+TGG | + | chr4_3:5541060-5541079 | Msa0626180:intron | 20.0% |
| !!! | TATGGAATTATATCATTTTC+GGG | - | chr4_3:5541306-5541325 | None:intergenic | 20.0% |
| !!! | AAGAGTAAAATGTTTGATTT+GGG | + | chr4_3:5541751-5541770 | Msa0626180:CDS | 20.0% |
| ! | TTCTTCACAATTATCAACTA+TGG | + | chr4_3:5538113-5538132 | Msa0626180:exon | 25.0% |
| ! | TCACTTCAAAAAAGTCAAAT+TGG | + | chr4_3:5538167-5538186 | Msa0626180:CDS | 25.0% |
| !!! | ATGAAATTAATGATGGGTTT+TGG | - | chr4_3:5538303-5538322 | None:intergenic | 25.0% |
| ! | TTTGTTAATTTCATATTGGG+TGG | + | chr4_3:5538396-5538415 | Msa0626180:intron | 25.0% |
| !! | GTTGTCTTCATAAGTTATTT+TGG | + | chr4_3:5538943-5538962 | Msa0626180:intron | 25.0% |
| !!! | GATGATGTGATTGTTATTTA+TGG | + | chr4_3:5539071-5539090 | Msa0626180:intron | 25.0% |
| ! | AGAATAAGATTGAAATTCCA+TGG | + | chr4_3:5539190-5539209 | Msa0626180:CDS | 25.0% |
| ! | GTGTTAGATATATGCTATAA+TGG | + | chr4_3:5539596-5539615 | Msa0626180:intron | 25.0% |
| ! | TTATTTATACCTATGTATGC+TGG | - | chr4_3:5539892-5539911 | None:intergenic | 25.0% |
| ! | AGAAGTGAACAAAATCTTAT+GGG | + | chr4_3:5540427-5540446 | Msa0626180:CDS | 25.0% |
| !!! | ATTGTTTTAATTTGGTCTGA+TGG | + | chr4_3:5540525-5540544 | Msa0626180:intron | 25.0% |
| ! | ATACAAAAAAGGCTATAAAC+AGG | - | chr4_3:5540559-5540578 | None:intergenic | 25.0% |
| !! | TTTAAATTTTCCTGAATGGT+CGG | + | chr4_3:5540673-5540692 | Msa0626180:intron | 25.0% |
| ! | ATTAAATTGGCAGTATTGTT+TGG | + | chr4_3:5540732-5540751 | Msa0626180:intron | 25.0% |
| ! | AATGCATTAAGATCTATTGA+GGG | - | chr4_3:5540958-5540977 | None:intergenic | 25.0% |
| ! | AATTTATTGTGGATATCTAC+GGG | + | chr4_3:5541015-5541034 | Msa0626180:intron | 25.0% |
| !! | CATTACATGTGTCTAAAATA+TGG | + | chr4_3:5541233-5541252 | Msa0626180:intron | 25.0% |
| ! | CTGCAGATGATAATAAAATA+TGG | - | chr4_3:5541324-5541343 | None:intergenic | 25.0% |
| ! | CAAGAGTAAAATGTTTGATT+TGG | + | chr4_3:5541750-5541769 | Msa0626180:CDS | 25.0% |
| !!! | TTTGTTGTCTTGTTTATAAC+TGG | - | chr4_3:5542091-5542110 | None:intergenic | 25.0% |
| ! | AAAAATATGTTCGTGTGTTT+GGG | + | chr4_3:5542108-5542127 | Msa0626180:three_prime_UTR | 25.0% |
| AAAGCAGGAGAAAAACAATT+TGG | + | chr4_3:5538028-5538047 | Msa0626180:five_prime_UTR | 30.0% | |
| TCAGAGTTGAAATCGAATTT+GGG | - | chr4_3:5538237-5538256 | None:intergenic | 30.0% | |
| ATCAGAGTTGAAATCGAATT+TGG | - | chr4_3:5538238-5538257 | None:intergenic | 30.0% | |
| TGAAAGAAAAAGAGAACCTT+AGG | - | chr4_3:5538264-5538283 | None:intergenic | 30.0% | |
| ACCCATCATTAATTTCATTC+TGG | + | chr4_3:5538305-5538324 | Msa0626180:intron | 30.0% | |
| CCCAGAATGAAATTAATGAT+GGG | - | chr4_3:5538309-5538328 | None:intergenic | 30.0% | |
| CCCATCATTAATTTCATTCT+GGG | + | chr4_3:5538306-5538325 | Msa0626180:intron | 30.0% | |
| ACCCAGAATGAAATTAATGA+TGG | - | chr4_3:5538310-5538329 | None:intergenic | 30.0% | |
| TCCAAAGGATTGTATGAAAT+CGG | - | chr4_3:5538535-5538554 | None:intergenic | 30.0% | |
| !!! | TGTTTTGAAGATTGGTACTT+GGG | + | chr4_3:5538729-5538748 | Msa0626180:CDS | 30.0% |
| CAGTATAAGTCTAGATATGA+AGG | + | chr4_3:5539099-5539118 | Msa0626180:intron | 30.0% | |
| TTGTCAAATAGCTTATGTAG+CGG | + | chr4_3:5539683-5539702 | Msa0626180:intron | 30.0% | |
| ATTGACAACATATGCTAAGT+TGG | + | chr4_3:5539756-5539775 | Msa0626180:intron | 30.0% | |
| !! | CAATTCATTTGGTAATGAAG+TGG | + | chr4_3:5540103-5540122 | Msa0626180:intron | 30.0% |
| AATCACATCATTAAGACATC+AGG | - | chr4_3:5540135-5540154 | None:intergenic | 30.0% | |
| ! | CATAAGATTTTGTTCACTTC+TGG | - | chr4_3:5540428-5540447 | None:intergenic | 30.0% |
| CAGAAGTGAACAAAATCTTA+TGG | + | chr4_3:5540426-5540445 | Msa0626180:CDS | 30.0% | |
| TAGATTGTACCTAGACTAAA+TGG | - | chr4_3:5540842-5540861 | None:intergenic | 30.0% | |
| TTTCTGATTAATCTGCAATC+CGG | + | chr4_3:5540909-5540928 | Msa0626180:intron | 30.0% | |
| ATGCATTAAGATCTATTGAG+GGG | - | chr4_3:5540957-5540976 | None:intergenic | 30.0% | |
| GAATGCATTAAGATCTATTG+AGG | - | chr4_3:5540959-5540978 | None:intergenic | 30.0% | |
| AATATTATTCCTCTGTTCTG+AGG | + | chr4_3:5541139-5541158 | Msa0626180:intron | 30.0% | |
| TAATGATTAAAGACAGTAGC+AGG | - | chr4_3:5541178-5541197 | None:intergenic | 30.0% | |
| !! | TTTTGAACCTGTTTTTCTTC+AGG | - | chr4_3:5541667-5541686 | None:intergenic | 30.0% |
| GAAGAAAAACAGGTTCAAAA+TGG | + | chr4_3:5541667-5541686 | Msa0626180:CDS | 30.0% | |
| !! | TGAAGATAGAAAAGTTGATG+AGG | + | chr4_3:5541711-5541730 | Msa0626180:CDS | 30.0% |
| !! | GAAGATAGAAAAGTTGATGA+GGG | + | chr4_3:5541712-5541731 | Msa0626180:CDS | 30.0% |
| ACTGGAAATGGAAAATATCA+CGG | - | chr4_3:5542073-5542092 | None:intergenic | 30.0% | |
| !! | GTCTTGTTTATAACTGGAAA+TGG | - | chr4_3:5542085-5542104 | None:intergenic | 30.0% |
| CAAAAATATGTTCGTGTGTT+TGG | + | chr4_3:5542107-5542126 | Msa0626180:three_prime_UTR | 30.0% | |
| TTTCAACTCTGATTCTCCTA+AGG | + | chr4_3:5538245-5538264 | Msa0626180:CDS | 35.0% | |
| TCCGATTTCATACAATCCTT+TGG | + | chr4_3:5538531-5538550 | Msa0626180:CDS | 35.0% | |
| TGAATCAAATCCAACAGTGA+AGG | - | chr4_3:5538595-5538614 | None:intergenic | 35.0% | |
| TTCCAAGAAGAAAGATCAGA+AGG | + | chr4_3:5538639-5538658 | Msa0626180:CDS | 35.0% | |
| TCCAAGAAGAAAGATCAGAA+GGG | + | chr4_3:5538640-5538659 | Msa0626180:CDS | 35.0% | |
| !!! | CTGTTTTGAAGATTGGTACT+TGG | + | chr4_3:5538728-5538747 | Msa0626180:CDS | 35.0% |
| CACCATCTCAAAACTTATGA+TGG | + | chr4_3:5539037-5539056 | Msa0626180:intron | 35.0% | |
| !!! | CACCATCATAAGTTTTGAGA+TGG | - | chr4_3:5539042-5539061 | None:intergenic | 35.0% |
| GTCTAGATATGAAGGAGATT+TGG | + | chr4_3:5539107-5539126 | Msa0626180:CDS | 35.0% | |
| TAGATATGAAGGAGATTTGG+TGG | + | chr4_3:5539110-5539129 | Msa0626180:CDS | 35.0% | |
| AATTCCATGGTCTGATATCA+TGG | + | chr4_3:5539203-5539222 | Msa0626180:CDS | 35.0% | |
| ACAATAACTTCCAATGTTCC+TGG | - | chr4_3:5539258-5539277 | None:intergenic | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | + | chr4_3:5539398-5539417 | Msa0626180:intron | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | + | chr4_3:5539398-5539417 | Msa0626180:intron | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | + | chr4_3:5539398-5539417 | Msa0626180:intron | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | + | chr4_3:5539398-5539417 | Msa0626180:intron | 35.0% | |
| ATTGATCTCCCTGAAAAACA+GGG | - | chr4_3:5539811-5539830 | None:intergenic | 35.0% | |
| CAATCAACAACAGACTTTAC+TGG | + | chr4_3:5539858-5539877 | Msa0626180:CDS | 35.0% | |
| AAAACAAATCTGTGCACTCT+TGG | - | chr4_3:5540069-5540088 | None:intergenic | 35.0% | |
| AACCATCACTCAATTCAATG+TGG | - | chr4_3:5540324-5540343 | None:intergenic | 35.0% | |
| CATTGAATTGAGTGATGGTT+TGG | + | chr4_3:5540324-5540343 | Msa0626180:CDS | 35.0% | |
| GTTTGGATAGAAGAAGTGAA+GGG | + | chr4_3:5540341-5540360 | Msa0626180:CDS | 35.0% | |
| ! | AAGATTTTGTTCACTTCTGG+AGG | - | chr4_3:5540425-5540444 | None:intergenic | 35.0% |
| TAGACTAAATGGTCGAGATT+TGG | - | chr4_3:5540831-5540850 | None:intergenic | 35.0% | |
| AAATCTCGACCATTTAGTCT+AGG | + | chr4_3:5540830-5540849 | Msa0626180:intron | 35.0% | |
| TAGGTACAATCTACATCCAA+TGG | + | chr4_3:5540849-5540868 | Msa0626180:intron | 35.0% | |
| TTCTGATTAATCTGCAATCC+GGG | + | chr4_3:5540910-5540929 | Msa0626180:intron | 35.0% | |
| AATCAAAAACCTCAGAACAG+AGG | - | chr4_3:5541151-5541170 | None:intergenic | 35.0% | |
| CGGGTGATAATAAAATCACA+AGG | - | chr4_3:5541287-5541306 | None:intergenic | 35.0% | |
| CTGAGAAACTTATCAGATTC+AGG | - | chr4_3:5541388-5541407 | None:intergenic | 35.0% | |
| !! | GATGATTTGGTTAACCACAT+CGG | + | chr4_3:5541457-5541476 | Msa0626180:CDS | 35.0% |
| ! | TTAGTGAAGCTGGAATTTTC+AGG | - | chr4_3:5541508-5541527 | None:intergenic | 35.0% |
| ATGAACAGAATGTCATGACA+AGG | + | chr4_3:5541599-5541618 | Msa0626180:CDS | 35.0% | |
| TGAACAGAATGTCATGACAA+GGG | + | chr4_3:5541600-5541619 | Msa0626180:CDS | 35.0% | |
| ! | TTTCTGAAGAAGGCAGTATA+AGG | - | chr4_3:5541632-5541651 | None:intergenic | 35.0% |
| ATTTGCTTCTGAATCTTCCA+AGG | + | chr4_3:5541851-5541870 | Msa0626180:CDS | 35.0% | |
| GACATAGGAAACAGAAAATG+TGG | - | chr4_3:5541889-5541908 | None:intergenic | 35.0% | |
| AACATGACTATCAGAATCCT+CGG | - | chr4_3:5541911-5541930 | None:intergenic | 35.0% | |
| TGCGAAAGACTACAATAAAG+AGG | - | chr4_3:5541973-5541992 | None:intergenic | 35.0% | |
| ! | GTGCATATTTTATGTGCAGT+TGG | + | chr4_3:5541997-5542016 | Msa0626180:three_prime_UTR | 35.0% |
| AGTTGGTTACTTAAGCTCAA+TGG | + | chr4_3:5542014-5542033 | Msa0626180:three_prime_UTR | 35.0% | |
| GTTGGTTACTTAAGCTCAAT+GGG | + | chr4_3:5542015-5542034 | Msa0626180:three_prime_UTR | 35.0% | |
| GAAATGGAAAATATCACGGT+TGG | - | chr4_3:5542069-5542088 | None:intergenic | 35.0% | |
| ! | TGTTTGGAACAGTGTGATTC+AGG | + | chr4_3:5538496-5538515 | Msa0626180:intron | 40.0% |
| TGTGATTCAGGTGATGATTC+TGG | + | chr4_3:5538508-5538527 | Msa0626180:CDS | 40.0% | |
| ACCCTTCTGATCTTTCTTCT+TGG | - | chr4_3:5538644-5538663 | None:intergenic | 40.0% | |
| CCAATCTTCAAAACAGTAGC+AGG | - | chr4_3:5538724-5538743 | None:intergenic | 40.0% | |
| !!! | CCTGCTACTGTTTTGAAGAT+TGG | + | chr4_3:5538721-5538740 | Msa0626180:CDS | 40.0% |
| TTTGAAGATTGGTACTTGGG+AGG | + | chr4_3:5538732-5538751 | Msa0626180:CDS | 40.0% | |
| TTGCGAAGCATAAGCTTGTA+TGG | + | chr4_3:5539145-5539164 | Msa0626180:CDS | 40.0% | |
| TGCGAAGCATAAGCTTGTAT+GGG | + | chr4_3:5539146-5539165 | Msa0626180:CDS | 40.0% | |
| CTTGTATGGGAAGTTCTTGA+TGG | + | chr4_3:5539159-5539178 | Msa0626180:CDS | 40.0% | |
| !! | TGGTGTGTATTTGTTGTAGC+TGG | + | chr4_3:5539776-5539795 | Msa0626180:intron | 40.0% |
| !! | TGTATTTGTTGTAGCTGGCA+AGG | + | chr4_3:5539781-5539800 | Msa0626180:intron | 40.0% |
| TTGATCTCCCTGAAAAACAG+GGG | - | chr4_3:5539810-5539829 | None:intergenic | 40.0% | |
| GATTGATCTCCCTGAAAAAC+AGG | - | chr4_3:5539812-5539831 | None:intergenic | 40.0% | |
| TCAACAACAGACTTTACTGG+TGG | + | chr4_3:5539861-5539880 | Msa0626180:CDS | 40.0% | |
| TGTCATCTCAAGTGCATGAT+TGG | + | chr4_3:5539930-5539949 | Msa0626180:intron | 40.0% | |
| TCTCAAGTGCATGATTGGAA+TGG | + | chr4_3:5539935-5539954 | Msa0626180:intron | 40.0% | |
| GAATGGCGGTAAAATCAGAA+CGG | + | chr4_3:5539952-5539971 | Msa0626180:intron | 40.0% | |
| AAATCTGTGCACTCTTGGAT+TGG | - | chr4_3:5540064-5540083 | None:intergenic | 40.0% | |
| GGAGAATCCAACACAAATTC+CGG | - | chr4_3:5540271-5540290 | None:intergenic | 40.0% | |
| !! | GATTCTCCATACTTTGAGAC+TGG | + | chr4_3:5540283-5540302 | Msa0626180:CDS | 40.0% |
| CACTCAATTCAATGTGGTCA+TGG | - | chr4_3:5540318-5540337 | None:intergenic | 40.0% | |
| GACCACATTGAATTGAGTGA+TGG | + | chr4_3:5540319-5540338 | Msa0626180:CDS | 40.0% | |
| GGTTTGGATAGAAGAAGTGA+AGG | + | chr4_3:5540340-5540359 | Msa0626180:CDS | 40.0% | |
| !! | GATTTTTGGACTGCATGATG+TGG | + | chr4_3:5540372-5540391 | Msa0626180:CDS | 40.0% |
| AGCTAGGTGAGGTAATTTCT+TGG | - | chr4_3:5540474-5540493 | None:intergenic | 40.0% | |
| GGCAGTATTGTTTGGTTGTT+TGG | + | chr4_3:5540740-5540759 | Msa0626180:intron | 40.0% | |
| TTTAGATCAACCCTCAATGC+CGG | + | chr4_3:5540777-5540796 | Msa0626180:intron | 40.0% | |
| TGCATGCAAATCTCAACCAT+TGG | - | chr4_3:5540868-5540887 | None:intergenic | 40.0% | |
| ATTTGCATGCACAGGTTCAA+CGG | + | chr4_3:5540877-5540896 | Msa0626180:intron | 40.0% | |
| ATAATCAACACTAGTGCAGC+TGG | - | chr4_3:5541050-5541069 | None:intergenic | 40.0% | |
| ATTAACCCCCATGCAATCAA+AGG | + | chr4_3:5541346-5541365 | Msa0626180:CDS | 40.0% | |
| TGAAACCTTTGATTGCATGG+GGG | - | chr4_3:5541354-5541373 | None:intergenic | 40.0% | |
| CTGAAACCTTTGATTGCATG+GGG | - | chr4_3:5541355-5541374 | None:intergenic | 40.0% | |
| CCTGAAACCTTTGATTGCAT+GGG | - | chr4_3:5541356-5541375 | None:intergenic | 40.0% | |
| TCCTGAAACCTTTGATTGCA+TGG | - | chr4_3:5541357-5541376 | None:intergenic | 40.0% | |
| ! | TTGAGTCAGATTAAGTTGCC+TGG | + | chr4_3:5541412-5541431 | Msa0626180:CDS | 40.0% |
| AATCATCCATCGACATCGAA+GGG | - | chr4_3:5541444-5541463 | None:intergenic | 40.0% | |
| AAATCATCCATCGACATCGA+AGG | - | chr4_3:5541445-5541464 | None:intergenic | 40.0% | |
| TTCGATGTCGATGGATGATT+TGG | + | chr4_3:5541444-5541463 | Msa0626180:CDS | 40.0% | |
| TTCTGTTCATCATCAGAGAC+AGG | - | chr4_3:5541589-5541608 | None:intergenic | 40.0% | |
| ! | GTTTTTCTTCAGGTGGAGAA+GGG | - | chr4_3:5541657-5541676 | None:intergenic | 40.0% |
| ! | TGTTTTTCTTCAGGTGGAGA+AGG | - | chr4_3:5541658-5541677 | None:intergenic | 40.0% |
| TTCTCCACCTGAAGAAAAAC+AGG | + | chr4_3:5541657-5541676 | Msa0626180:CDS | 40.0% | |
| !! | TGAACCTGTTTTTCTTCAGG+TGG | - | chr4_3:5541664-5541683 | None:intergenic | 40.0% |
| ! | CAAGATGATGATGATGCTTC+TGG | + | chr4_3:5541781-5541800 | Msa0626180:CDS | 40.0% |
| ! | TTTTCTGTTTCCTATGTCCG+AGG | + | chr4_3:5541891-5541910 | Msa0626180:CDS | 40.0% |
| ! | AGTGGACTTGGTTCATCCAA+AGG | - | chr4_3:5538550-5538569 | None:intergenic | 45.0% |
| TTGGATGAACCAAGTCCACT+TGG | + | chr4_3:5538550-5538569 | Msa0626180:CDS | 45.0% | |
| TTCTTCAGACGCAAACCAAG+TGG | - | chr4_3:5538568-5538587 | None:intergenic | 45.0% | |
| GAAGAAGAGTCCTTCACTGT+TGG | + | chr4_3:5538582-5538601 | Msa0626180:CDS | 45.0% | |
| AGAGCCATGATATCAGACCA+TGG | - | chr4_3:5539210-5539229 | None:intergenic | 45.0% | |
| GTCTGATATCATGGCTCTCA+AGG | + | chr4_3:5539212-5539231 | Msa0626180:CDS | 45.0% | |
| !! | ATTTGTTGTAGCTGGCAAGG+AGG | + | chr4_3:5539784-5539803 | Msa0626180:intron | 45.0% |
| AAGGTATGCTTCCTTGGTTG+TGG | - | chr4_3:5539834-5539853 | None:intergenic | 45.0% | |
| ! | AACCAAGGAAGCATACCTTG+TGG | + | chr4_3:5539835-5539854 | Msa0626180:CDS | 45.0% |
| ! | GTCTGTTGTTGATTGCCACA+AGG | - | chr4_3:5539853-5539872 | None:intergenic | 45.0% |
| CAAGTGCATGATTGGAATGG+CGG | + | chr4_3:5539938-5539957 | Msa0626180:intron | 45.0% | |
| AATGCCCTCAAGGTCTGTTA+GGG | + | chr4_3:5540188-5540207 | Msa0626180:CDS | 45.0% | |
| TTGGCTCAGAAAGTTGAGAC+GGG | - | chr4_3:5540245-5540264 | None:intergenic | 45.0% | |
| ! | GTTGGCTCAGAAAGTTGAGA+CGG | - | chr4_3:5540246-5540265 | None:intergenic | 45.0% |
| CAACTTTCTGAGCCAACAAC+CGG | + | chr4_3:5540249-5540268 | Msa0626180:CDS | 45.0% | |
| CCAACACAAATTCCGGTTGT+TGG | - | chr4_3:5540264-5540283 | None:intergenic | 45.0% | |
| CCAACAACCGGAATTTGTGT+TGG | + | chr4_3:5540261-5540280 | Msa0626180:CDS | 45.0% | |
| GCAGTTCCAGTCTCAAAGTA+TGG | - | chr4_3:5540292-5540311 | None:intergenic | 45.0% | |
| AGAAGAAGTGAAGGGAAAGC+TGG | + | chr4_3:5540349-5540368 | Msa0626180:CDS | 45.0% | |
| GAAGAAGTGAAGGGAAAGCT+GGG | + | chr4_3:5540350-5540369 | Msa0626180:CDS | 45.0% | |
| ! | GAAGGGAAAGCTGGGATTTT+TGG | + | chr4_3:5540358-5540377 | Msa0626180:CDS | 45.0% |
| GACTGCATGATGTGGAATCA+GGG | + | chr4_3:5540380-5540399 | Msa0626180:CDS | 45.0% | |
| GAAATTACCTCACCTAGCTC+AGG | + | chr4_3:5540475-5540494 | Msa0626180:CDS | 45.0% | |
| CCATAGGAATTACCTGAGCT+AGG | - | chr4_3:5540490-5540509 | None:intergenic | 45.0% | |
| CCTAGCTCAGGTAATTCCTA+TGG | + | chr4_3:5540487-5540506 | Msa0626180:intron | 45.0% | |
| TACAGTTTCACCGACCATTC+AGG | - | chr4_3:5540686-5540705 | None:intergenic | 45.0% | |
| ATTTGGCTGCACCAGCTATA+TGG | - | chr4_3:5540814-5540833 | None:intergenic | 45.0% | |
| TGGTTGAGATTTGCATGCAC+AGG | + | chr4_3:5540869-5540888 | Msa0626180:intron | 45.0% | |
| ATTAATCTGCAATCCGGGTG+AGG | + | chr4_3:5540915-5540934 | Msa0626180:intron | 45.0% | |
| TTAATCTGCAATCCGGGTGA+GGG | + | chr4_3:5540916-5540935 | Msa0626180:intron | 45.0% | |
| CCCATGCAATCAAAGGTTTC+AGG | + | chr4_3:5541353-5541372 | Msa0626180:CDS | 45.0% | |
| ATCAAAGGTTTCAGGAGCAG+AGG | + | chr4_3:5541361-5541380 | Msa0626180:CDS | 45.0% | |
| ACACTGCATTTCGGAACAGA+TGG | + | chr4_3:5541480-5541499 | Msa0626180:CDS | 45.0% | |
| CACTGCATTTCGGAACAGAT+GGG | + | chr4_3:5541481-5541500 | Msa0626180:CDS | 45.0% | |
| AGCTCTGTCATTAGTGAAGC+TGG | - | chr4_3:5541518-5541537 | None:intergenic | 45.0% | |
| CACTAATGACAGAGCTGTGT+TGG | + | chr4_3:5541522-5541541 | Msa0626180:CDS | 45.0% | |
| TAATGACAGAGCTGTGTTGG+AGG | + | chr4_3:5541525-5541544 | Msa0626180:CDS | 45.0% | |
| TGTTCATCATCAGAGACAGG+TGG | - | chr4_3:5541586-5541605 | None:intergenic | 45.0% | |
| ! | GAGAAGGGTCTTTCTGAAGA+AGG | - | chr4_3:5541642-5541661 | None:intergenic | 45.0% |
| AGCAAGGAAATGGTCTGTCT+AGG | + | chr4_3:5541812-5541831 | Msa0626180:CDS | 45.0% | |
| CTGTCTAGGAAAGAATCAGC+TGG | + | chr4_3:5541826-5541845 | Msa0626180:CDS | 45.0% | |
| CTATCAGAATCCTCGGACAT+AGG | - | chr4_3:5541904-5541923 | None:intergenic | 45.0% | |
| !!! | ATAAATTTTTTAATTTATTG+TGG | + | chr4_3:5541004-5541023 | Msa0626180:intron | 5.0% |
| ! | AGACGCAAACCAAGTGGACT+TGG | - | chr4_3:5538562-5538581 | None:intergenic | 50.0% |
| TGCTGCTGATAGCAAGCTCA+AGG | + | chr4_3:5538687-5538706 | Msa0626180:CDS | 50.0% | |
| TCTCAAGGCAAACTACCCTG+AGG | + | chr4_3:5539227-5539246 | Msa0626180:CDS | 50.0% | |
| ! | ATGTTCCTGGAGCATCCTCA+GGG | - | chr4_3:5539245-5539264 | None:intergenic | 50.0% |
| ! | AATGTTCCTGGAGCATCCTC+AGG | - | chr4_3:5539246-5539265 | None:intergenic | 50.0% |
| TGAGGATGCTCCAGGAACAT+TGG | + | chr4_3:5539245-5539264 | Msa0626180:CDS | 50.0% | |
| !! | AAGGAGGCCCCTGTTTTTCA+GGG | + | chr4_3:5539800-5539819 | Msa0626180:CDS | 50.0% |
| GGGAGATCAATCCACAACCA+AGG | + | chr4_3:5539820-5539839 | Msa0626180:CDS | 50.0% | |
| TGCCACAAGGTATGCTTCCT+TGG | - | chr4_3:5539840-5539859 | None:intergenic | 50.0% | |
| GTGGACAAGCCAGCATACAT+AGG | + | chr4_3:5539880-5539899 | Msa0626180:CDS | 50.0% | |
| !! | CTTGAGGGCATTGCACAAAG+TGG | - | chr4_3:5540180-5540199 | None:intergenic | 50.0% |
| CACTTTGTGCAATGCCCTCA+AGG | + | chr4_3:5540178-5540197 | Msa0626180:CDS | 50.0% | |
| CAATGCCCTCAAGGTCTGTT+AGG | + | chr4_3:5540187-5540206 | Msa0626180:CDS | 50.0% | |
| TGGCTCAGAAAGTTGAGACG+GGG | - | chr4_3:5540244-5540263 | None:intergenic | 50.0% | |
| GGACTGCATGATGTGGAATC+AGG | + | chr4_3:5540379-5540398 | Msa0626180:CDS | 50.0% | |
| CATGATGTGGAATCAGGGTC+TGG | + | chr4_3:5540385-5540404 | Msa0626180:CDS | 50.0% | |
| GGAATTACCTGAGCTAGGTG+AGG | - | chr4_3:5540485-5540504 | None:intergenic | 50.0% | |
| CACAGGTTCAACGGTTGTAG+AGG | + | chr4_3:5540886-5540905 | Msa0626180:intron | 50.0% | |
| TAAAACTTCCCTCCCTCACC+CGG | - | chr4_3:5540931-5540950 | None:intergenic | 50.0% | |
| TCTTCACCCTTCGATGTCGA+TGG | + | chr4_3:5541435-5541454 | Msa0626180:CDS | 50.0% | |
| CCACATCGGACACTGCATTT+CGG | + | chr4_3:5541471-5541490 | Msa0626180:CDS | 50.0% | |
| ACAGACCATTTCCTTGCTGC+TGG | - | chr4_3:5541810-5541829 | None:intergenic | 50.0% | |
| TGTGGCAGAGAAGCAATCCT+TGG | - | chr4_3:5541871-5541890 | None:intergenic | 50.0% | |
| AACTACCCTGAGGATGCTCC+AGG | + | chr4_3:5539237-5539256 | Msa0626180:CDS | 55.0% | |
| !! | CAAGGAGGCCCCTGTTTTTC+AGG | + | chr4_3:5539799-5539818 | Msa0626180:CDS | 55.0% |
| GCCTCCCTAACAGACCTTGA+GGG | - | chr4_3:5540195-5540214 | None:intergenic | 55.0% | |
| TGCCTCCCTAACAGACCTTG+AGG | - | chr4_3:5540196-5540215 | None:intergenic | 55.0% | |
| AACCCTCAATGCCGGATCCT+CGG | + | chr4_3:5540785-5540804 | Msa0626180:intron | 55.0% | |
| CTATATGGCTGCCGAGGATC+CGG | - | chr4_3:5540799-5540818 | None:intergenic | 55.0% | |
| ATCCTCGGCAGCCATATAGC+TGG | + | chr4_3:5540800-5540819 | Msa0626180:intron | 55.0% | |
| GACATCGAAGGGTGAAGACC+AGG | - | chr4_3:5541433-5541452 | None:intergenic | 55.0% | |
| CCGAAATGCAGTGTCCGATG+TGG | - | chr4_3:5541474-5541493 | None:intergenic | 55.0% | |
| GGTAGCCAGCAGCAAGGAAA+TGG | + | chr4_3:5541802-5541821 | Msa0626180:CDS | 55.0% | |
| GCCCTCAAGGTCTGTTAGGG+AGG | + | chr4_3:5540191-5540210 | Msa0626180:CDS | 60.0% | |
| ! | TGCCGAGGATCCGGCATTGA+GGG | - | chr4_3:5540790-5540809 | None:intergenic | 60.0% |
| CACCAGCTATATGGCTGCCG+AGG | - | chr4_3:5540805-5540824 | None:intergenic | 60.0% | |
| ATCTGCAATCCGGGTGAGGG+AGG | + | chr4_3:5540919-5540938 | Msa0626180:intron | 60.0% | |
| TCTGCAATCCGGGTGAGGGA+GGG | + | chr4_3:5540920-5540939 | Msa0626180:intron | 60.0% | |
| GCTTCTGGTAGCCAGCAGCA+AGG | + | chr4_3:5541796-5541815 | Msa0626180:CDS | 60.0% | |
| CTGCCGAGGATCCGGCATTG+AGG | - | chr4_3:5540791-5540810 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_3 | gene | 5538016 | 5542186 | 5538016 | ID=Msa0626180;Name=Msa0626180 |
| chr4_3 | mRNA | 5538016 | 5542186 | 5538016 | ID=Msa0626180-mRNA-1;Parent=Msa0626180;Name=Msa0626180-mRNA-1;_AED=0.04;_eAED=0.04;_QI=116|1|1|1|1|1|6|250|525 |
| chr4_3 | exon | 5538016 | 5538266 | 5538016 | ID=Msa0626180-mRNA-1:exon:1528;Parent=Msa0626180-mRNA-1 |
| chr4_3 | exon | 5538508 | 5538753 | 5538508 | ID=Msa0626180-mRNA-1:exon:1529;Parent=Msa0626180-mRNA-1 |
| chr4_3 | exon | 5539102 | 5539275 | 5539102 | ID=Msa0626180-mRNA-1:exon:1530;Parent=Msa0626180-mRNA-1 |
| chr4_3 | exon | 5539795 | 5539901 | 5539795 | ID=Msa0626180-mRNA-1:exon:1531;Parent=Msa0626180-mRNA-1 |
| chr4_3 | exon | 5540174 | 5540496 | 5540174 | ID=Msa0626180-mRNA-1:exon:1532;Parent=Msa0626180-mRNA-1 |
| chr4_3 | exon | 5541344 | 5542186 | 5541344 | ID=Msa0626180-mRNA-1:exon:1533;Parent=Msa0626180-mRNA-1 |
| chr4_3 | five_prime_UTR | 5538016 | 5538131 | 5538016 | ID=Msa0626180-mRNA-1:five_prime_utr;Parent=Msa0626180-mRNA-1 |
| chr4_3 | CDS | 5538132 | 5538266 | 5538132 | ID=Msa0626180-mRNA-1:cds;Parent=Msa0626180-mRNA-1 |
| chr4_3 | CDS | 5538508 | 5538753 | 5538508 | ID=Msa0626180-mRNA-1:cds;Parent=Msa0626180-mRNA-1 |
| chr4_3 | CDS | 5539102 | 5539275 | 5539102 | ID=Msa0626180-mRNA-1:cds;Parent=Msa0626180-mRNA-1 |
| chr4_3 | CDS | 5539795 | 5539901 | 5539795 | ID=Msa0626180-mRNA-1:cds;Parent=Msa0626180-mRNA-1 |
| chr4_3 | CDS | 5540174 | 5540496 | 5540174 | ID=Msa0626180-mRNA-1:cds;Parent=Msa0626180-mRNA-1 |
| chr4_3 | CDS | 5541344 | 5541936 | 5541344 | ID=Msa0626180-mRNA-1:cds;Parent=Msa0626180-mRNA-1 |
| chr4_3 | three_prime_UTR | 5541937 | 5542186 | 5541937 | ID=Msa0626180-mRNA-1:three_prime_utr;Parent=Msa0626180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
