Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586160 | XP_013454547.1 | 95.472 | 530 | 14 | 4 | 1 | 525 | 1 | 525 | 0.0 | 1025 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0476070 | Msa0586160 | 0.802720 | 4.907620e-49 | -8.615850e-47 |
| Msa0480770 | Msa0586160 | 0.815428 | 9.291960e-52 | -8.615850e-47 |
| Msa0268070 | Msa0586160 | 0.816474 | 5.427047e-52 | -8.615850e-47 |
| Msa0527880 | Msa0586160 | 0.825608 | 4.272273e-54 | -8.615850e-47 |
| Msa0577640 | Msa0586160 | 0.809502 | 1.833496e-50 | -8.615850e-47 |
| Msa0577730 | Msa0586160 | 0.828687 | 7.825521e-55 | -8.615850e-47 |
| Msa0586160 | Msa0611320 | 0.803861 | 2.848114e-49 | -8.615850e-47 |
| Msa0586160 | Msa0626180 | 0.991326 | 4.638951e-187 | -8.615850e-47 |
| Msa0586160 | Msa0652700 | 0.820837 | 5.552713e-53 | -8.615850e-47 |
| Msa0586160 | Msa0663320 | 0.938899 | 3.133290e-99 | -8.615850e-47 |
| Msa0586160 | Msa0664030 | 0.942982 | 2.729854e-102 | -8.615850e-47 |
| Msa0586160 | Msa0945230 | 0.816593 | 5.105129e-52 | -8.615850e-47 |
| Msa0586160 | Msa1219790 | 0.818569 | 1.830650e-52 | -8.615850e-47 |
| Msa0586160 | Msa1267080 | 0.825685 | 4.096798e-54 | -8.615850e-47 |
| Msa0586160 | Msa1401550 | 0.831637 | 1.491056e-55 | -8.615850e-47 |
| Msa0586160 | Msa1443220 | 0.812578 | 3.951677e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586160 | MtrunA17_Chr4g0001981 | 95.472 | 530 | 14 | 4 | 1 | 525 | 1 | 525 | 0.0 | 1025 |
| Msa0586160 | MtrunA17_Chr4g0073561 | 49.786 | 468 | 205 | 9 | 60 | 519 | 51 | 496 | 7.45e-136 | 402 |
| Msa0586160 | MtrunA17_Chr1g0192751 | 44.737 | 190 | 96 | 3 | 65 | 253 | 42 | 223 | 4.00e-44 | 160 |
| Msa0586160 | MtrunA17_Chr6g0453721 | 38.049 | 205 | 109 | 5 | 60 | 262 | 1 | 189 | 3.94e-34 | 128 |
| Msa0586160 | MtrunA17_Chr6g0453841 | 34.091 | 220 | 112 | 6 | 60 | 262 | 1 | 204 | 1.37e-26 | 108 |
| Msa0586160 | MtrunA17_Chr4g0073591 | 65.217 | 69 | 24 | 0 | 126 | 194 | 14 | 82 | 1.13e-25 | 101 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0586160 | AT2G24100.1 | 44.906 | 530 | 216 | 13 | 1 | 519 | 1 | 465 | 6.64e-130 | 387 |
| Msa0586160 | AT4G30780.1 | 50.398 | 377 | 150 | 7 | 17 | 370 | 26 | 388 | 3.72e-112 | 345 |
| Msa0586160 | AT4G30780.1 | 35.429 | 175 | 92 | 7 | 354 | 525 | 433 | 589 | 1.62e-13 | 73.6 |
| Msa0586160 | AT3G05770.2 | 40.000 | 215 | 119 | 4 | 60 | 265 | 20 | 233 | 9.59e-37 | 140 |
| Msa0586160 | AT3G05770.1 | 40.000 | 215 | 119 | 4 | 60 | 265 | 20 | 233 | 1.35e-36 | 140 |
| Msa0586160 | AT1G54300.1 | 42.500 | 160 | 82 | 4 | 115 | 265 | 2 | 160 | 3.40e-29 | 117 |
Find 129 sgRNAs with CRISPR-Local
Find 254 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATCAGAGTTGAAATCGAATT+TGG | 0.132685 | 4_2:+7273213 | None:intergenic |
| ACCCTTCTGATCTTTCTTCT+TGG | 0.228703 | 4_2:+7272807 | None:intergenic |
| CAAGAGTAAAATGTTTGATT+TGG | 0.243000 | 4_2:-7269703 | Msa0586160:CDS |
| CTGAGAAACTTATCAGATTC+AGG | 0.259989 | 4_2:+7270068 | None:intergenic |
| TTTGTTGTCTTGTTTATAAC+TGG | 0.269895 | 4_2:+7269365 | None:intergenic |
| CAGAAGTGAACAAAATCTTA+TGG | 0.288359 | 4_2:-7271022 | Msa0586160:CDS |
| CCCATGCAATCAAAGGTTTC+AGG | 0.301138 | 4_2:-7270100 | Msa0586160:CDS |
| TGTTTGGAACAGTGTGATTC+AGG | 0.311820 | 4_2:-7272952 | Msa0586160:intron |
| CAATGCCCTCAAGGTCTGTT+AGG | 0.323271 | 4_2:-7271261 | Msa0586160:CDS |
| AAGAGTAAAATGTTTGATTT+GGG | 0.335503 | 4_2:-7269702 | Msa0586160:CDS |
| TTCGATGTCGATGGATGATT+TGG | 0.335720 | 4_2:-7270009 | Msa0586160:CDS |
| TTCTTCACAATCATCAACTA+TGG | 0.345038 | 4_2:-7273335 | Msa0586160:exon |
| GGACTGCATGATGTGGAATC+AGG | 0.352036 | 4_2:-7271069 | Msa0586160:CDS |
| AGCTAGGTGAGGTAATTTCT+TGG | 0.354560 | 4_2:+7270977 | None:intergenic |
| AGAAGAAGTGAAGGGAAAGC+TGG | 0.361169 | 4_2:-7271099 | Msa0586160:CDS |
| CATTGAATTGAGTGATGGTT+TGG | 0.363177 | 4_2:-7271124 | Msa0586160:CDS |
| ACAATAACTTCCAATGTTCC+TGG | 0.363801 | 4_2:+7272193 | None:intergenic |
| TCCGATTTCATACAATCCTT+TGG | 0.368995 | 4_2:-7272917 | Msa0586160:CDS |
| TTGCGAAGCATAAGCTTGTA+TGG | 0.377568 | 4_2:-7272303 | Msa0586160:CDS |
| GTCTAGATATGAAGGAGATT+TGG | 0.382647 | 4_2:-7272341 | Msa0586160:CDS |
| TGCCACAAGGTATGCTTCCT+TGG | 0.393612 | 4_2:+7271611 | None:intergenic |
| TCCTGAAACCTTTGATTGCA+TGG | 0.393638 | 4_2:+7270099 | None:intergenic |
| TCCAAAGGATTGTATGAAAT+CGG | 0.396620 | 4_2:+7272916 | None:intergenic |
| TTTCTGAAGAAGGCAGTATA+AGG | 0.405521 | 4_2:+7269824 | None:intergenic |
| CAATCAACAACAGACTTTAC+TGG | 0.408931 | 4_2:-7271590 | Msa0586160:CDS |
| GGAGAATCCAACACAAATTC+CGG | 0.411628 | 4_2:+7271180 | None:intergenic |
| CCACATCGGACACTGCATTT+CGG | 0.412120 | 4_2:-7269982 | Msa0586160:CDS |
| GCAGTTCCAGTCTCAAAGTA+TGG | 0.416139 | 4_2:+7271159 | None:intergenic |
| CAAGATGATGATGATGCTTC+TGG | 0.418720 | 4_2:-7269672 | Msa0586160:CDS |
| TCAGAGTTGAAATCGAATTT+GGG | 0.419622 | 4_2:+7273214 | None:intergenic |
| CTATCAGAATCCTCGGACAT+AGG | 0.423015 | 4_2:+7269552 | None:intergenic |
| CCTGAAACCTTTGATTGCAT+GGG | 0.423667 | 4_2:+7270100 | None:intergenic |
| GTCTTGTTTATAACTGGAAA+TGG | 0.425377 | 4_2:+7269371 | None:intergenic |
| GTTGGTTACTTAAACTCAAT+GGG | 0.426099 | 4_2:-7269438 | Msa0586160:three_prime_UTR |
| AGTTGGTTACTTAAACTCAA+TGG | 0.430062 | 4_2:-7269439 | Msa0586160:three_prime_UTR |
| TGTGATTCAGGTGATGATTC+TGG | 0.430308 | 4_2:-7272940 | Msa0586160:CDS |
| CTTGTATGGGAAGTTCTTGA+TGG | 0.433138 | 4_2:-7272289 | Msa0586160:CDS |
| AATGTTCCTGGAGCATCCTC+AGG | 0.433779 | 4_2:+7272205 | None:intergenic |
| CCAACACAAATTCCGGTTGT+TGG | 0.433853 | 4_2:+7271187 | None:intergenic |
| GGTAGCCAGCAGCAAGGAAA+TGG | 0.434094 | 4_2:-7269651 | Msa0586160:CDS |
| AAGGTATGCTTCCTTGGTTG+TGG | 0.434236 | 4_2:+7271617 | None:intergenic |
| AGCTCTGTCATTAGTGAAGC+TGG | 0.450625 | 4_2:+7269938 | None:intergenic |
| AGAAGTGAACAAAATCTTAT+GGG | 0.452591 | 4_2:-7271021 | Msa0586160:CDS |
| CAACTTTCTGAGCCAACAAC+CGG | 0.458040 | 4_2:-7271199 | Msa0586160:CDS |
| CTGAAACCTTTGATTGCATG+GGG | 0.466395 | 4_2:+7270101 | None:intergenic |
| GATTCTCCATACTTTGAGAC+TGG | 0.468589 | 4_2:-7271165 | Msa0586160:CDS |
| TTATTTATACCTATGTATGC+TGG | 0.472570 | 4_2:+7271559 | None:intergenic |
| GAAGAAGTGAAGGGAAAGCT+GGG | 0.473769 | 4_2:-7271098 | Msa0586160:CDS |
| CACTTTGTGCAATGCCCTCA+AGG | 0.479139 | 4_2:-7271270 | Msa0586160:CDS |
| ACAGACCATTTCCTTGCTGC+TGG | 0.483280 | 4_2:+7269646 | None:intergenic |
| CACTAATGACAGAGCTGTGT+TGG | 0.483298 | 4_2:-7269931 | Msa0586160:CDS |
| GAAGAAGAGTCCTTCACTGT+TGG | 0.484620 | 4_2:-7272866 | Msa0586160:CDS |
| AATTCCATGGTCTGATATCA+TGG | 0.485625 | 4_2:-7272245 | Msa0586160:CDS |
| CCAATCTTCAAAACAGTAGC+AGG | 0.487934 | 4_2:+7272727 | None:intergenic |
| TTTCAACTCTGATTCTCCTA+AGG | 0.489774 | 4_2:-7273203 | Msa0586160:intron |
| CCAACAACCGGAATTTGTGT+TGG | 0.491090 | 4_2:-7271187 | Msa0586160:CDS |
| TTGAGTCAGATTAAGTTGCC+TGG | 0.498526 | 4_2:-7270041 | Msa0586160:CDS |
| AGACGCAAACCAAGTGGACT+TGG | 0.503986 | 4_2:+7272889 | None:intergenic |
| TCTTCACCCTTCGATGTCGA+TGG | 0.504190 | 4_2:-7270018 | Msa0586160:CDS |
| GAAATGGAAAATATCACTGT+TGG | 0.504344 | 4_2:+7269387 | None:intergenic |
| CAGTATAAGTCTAGATATGA+AGG | 0.517526 | 4_2:-7272349 | Msa0586160:CDS |
| ATTTGCTTCTGAATCTTCCA+AGG | 0.519721 | 4_2:-7269602 | Msa0586160:CDS |
| CACTCAATTCAATGTGGTCA+TGG | 0.523533 | 4_2:+7271133 | None:intergenic |
| TGTGGCAGAGAAGCAATCCT+TGG | 0.523882 | 4_2:+7269585 | None:intergenic |
| GAAATTACCTCACCTAGCTC+AGG | 0.524612 | 4_2:-7270973 | Msa0586160:intron |
| TGAGGATGCTCCAGGAACAT+TGG | 0.526671 | 4_2:-7272203 | Msa0586160:CDS |
| GTCTGATATCATGGCTCTCA+AGG | 0.526777 | 4_2:-7272236 | Msa0586160:CDS |
| TAATGACAGAGCTGTGTTGG+AGG | 0.526990 | 4_2:-7269928 | Msa0586160:CDS |
| CATGATGTGGAATCAGGGTC+TGG | 0.530089 | 4_2:-7271063 | Msa0586160:CDS |
| AGAATAAGATTGAAATTCCA+TGG | 0.535046 | 4_2:-7272258 | Msa0586160:CDS |
| TTGGATGAACCAAGTCCACT+TGG | 0.535980 | 4_2:-7272898 | Msa0586160:CDS |
| TTCTGTTCATCATCAGAGAC+AGG | 0.536856 | 4_2:+7269867 | None:intergenic |
| GACATCGAAGGGTGAAGACC+AGG | 0.537780 | 4_2:+7270023 | None:intergenic |
| TGCGAAAGACTACAATAAAG+AGG | 0.539321 | 4_2:+7269483 | None:intergenic |
| TGCTGCTGATAGCAAGCTCA+AGG | 0.539666 | 4_2:-7272761 | Msa0586160:CDS |
| TTGGCTCAGAAAGTTGAGAC+GGG | 0.539829 | 4_2:+7271206 | None:intergenic |
| CTGTCTAGGAAAGAATCAGC+TGG | 0.542082 | 4_2:-7269627 | Msa0586160:CDS |
| AACTACCCTGAGGATGCTCC+AGG | 0.542158 | 4_2:-7272211 | Msa0586160:CDS |
| GCCTCCCTAACAGACCTTGA+GGG | 0.542641 | 4_2:+7271256 | None:intergenic |
| ACACTGCATTTCGGAACAGA+TGG | 0.543363 | 4_2:-7269973 | Msa0586160:CDS |
| AATGCCCTCAAGGTCTGTTA+GGG | 0.546969 | 4_2:-7271260 | Msa0586160:CDS |
| TGTATTTGTTGTAGCTGGCA+AGG | 0.547557 | 4_2:-7271667 | Msa0586160:intron |
| TGCGAAGCATAAGCTTGTAT+GGG | 0.558386 | 4_2:-7272302 | Msa0586160:CDS |
| GCTGGACATCGTAGAAAAGC+AGG | 0.559213 | 4_2:-7273441 | Msa0586160:five_prime_UTR |
| TTCCAAGAAGAAAGATCAGA+AGG | 0.560722 | 4_2:-7272809 | Msa0586160:CDS |
| GCCCTCAAGGTCTGTTAGGG+AGG | 0.562789 | 4_2:-7271257 | Msa0586160:CDS |
| GGTTTGGATAGAAGAAGTGA+AGG | 0.566531 | 4_2:-7271108 | Msa0586160:CDS |
| GAGAAGGGTCTTTCTGAAGA+AGG | 0.568373 | 4_2:+7269814 | None:intergenic |
| AACATGACTATCAGAATCCT+CGG | 0.577952 | 4_2:+7269545 | None:intergenic |
| CACTGCATTTCGGAACAGAT+GGG | 0.578013 | 4_2:-7269972 | Msa0586160:CDS |
| TAGATATGAAGGAGATTTGG+TGG | 0.584423 | 4_2:-7272338 | Msa0586160:CDS |
| TGCCTCCCTAACAGACCTTG+AGG | 0.584503 | 4_2:+7271255 | None:intergenic |
| GTGGACAAGCCAGCATACAT+AGG | 0.584639 | 4_2:-7271568 | Msa0586160:intron |
| AGCAAGGAAATGGTCTGTCT+AGG | 0.585074 | 4_2:-7269641 | Msa0586160:CDS |
| AAATCATCCATCGACATCGA+AGG | 0.585590 | 4_2:+7270011 | None:intergenic |
| AGTGGACTTGGTTCATCCAA+AGG | 0.586408 | 4_2:+7272901 | None:intergenic |
| CCATAGGAATTACCTGAGCT+AGG | 0.591916 | 4_2:+7270961 | None:intergenic |
| TTCTTCAGACGCAAACCAAG+TGG | 0.595315 | 4_2:+7272883 | None:intergenic |
| ATCAAAGGTTTCAGGAGCAG+AGG | 0.596879 | 4_2:-7270092 | Msa0586160:CDS |
| GACTGCATGATGTGGAATCA+GGG | 0.597635 | 4_2:-7271068 | Msa0586160:CDS |
| GACATAGGAAACAGAAAATG+TGG | 0.600386 | 4_2:+7269567 | None:intergenic |
| TGAATCAAATCCAACAGTGA+AGG | 0.602378 | 4_2:+7272856 | None:intergenic |
| GTTGGCTCAGAAAGTTGAGA+CGG | 0.604139 | 4_2:+7271205 | None:intergenic |
| GAAGATAGAAAAGTTGATGA+GGG | 0.606665 | 4_2:-7269741 | Msa0586160:CDS |
| TTTGAAGATTGGTACTTGGG+AGG | 0.609526 | 4_2:-7272716 | Msa0586160:intron |
| GACCACATTGAATTGAGTGA+TGG | 0.611625 | 4_2:-7271129 | Msa0586160:CDS |
| TGAAGATAGAAAAGTTGATG+AGG | 0.612436 | 4_2:-7269742 | Msa0586160:CDS |
| AATCATCCATCGACATCGAA+GGG | 0.616354 | 4_2:+7270012 | None:intergenic |
| GTCTGTTGTTGATTGCCACA+AGG | 0.622596 | 4_2:+7271598 | None:intergenic |
| CTTGAGGGCATTGCACAAAG+TGG | 0.635048 | 4_2:+7271271 | None:intergenic |
| TCAACAACAGACTTTACTGG+TGG | 0.640598 | 4_2:-7271587 | Msa0586160:CDS |
| ATGTTCCTGGAGCATCCTCA+GGG | 0.646838 | 4_2:+7272206 | None:intergenic |
| GTTTGGATAGAAGAAGTGAA+GGG | 0.651890 | 4_2:-7271107 | Msa0586160:CDS |
| TCCAAGAAGAAAGATCAGAA+GGG | 0.651999 | 4_2:-7272808 | Msa0586160:CDS |
| TGTTCATCATCAGAGACAGG+TGG | 0.655949 | 4_2:+7269870 | None:intergenic |
| ATTTGTTGTAGCTGGCAAGG+AGG | 0.658694 | 4_2:-7271664 | Msa0586160:intron |
| GGGAGATCAATCCACAACCA+AGG | 0.673080 | 4_2:-7271628 | Msa0586160:CDS |
| GCTTCTGGTAGCCAGCAGCA+AGG | 0.673116 | 4_2:-7269657 | Msa0586160:CDS |
| ATGAACAGAATGTCATGACA+AGG | 0.678824 | 4_2:-7269854 | Msa0586160:CDS |
| GGAATTACCTGAGCTAGGTG+AGG | 0.680636 | 4_2:+7270966 | None:intergenic |
| TGGCTCAGAAAGTTGAGACG+GGG | 0.681167 | 4_2:+7271207 | None:intergenic |
| GATGATTTGGTTAACCACAT+CGG | 0.685792 | 4_2:-7269996 | Msa0586160:CDS |
| AGAGCCATGATATCAGACCA+TGG | 0.692062 | 4_2:+7272241 | None:intergenic |
| TGAAACCTTTGATTGCATGG+GGG | 0.696180 | 4_2:+7270102 | None:intergenic |
| CCGAAATGCAGTGTCCGATG+TGG | 0.700782 | 4_2:+7269982 | None:intergenic |
| AACCATCACTCAATTCAATG+TGG | 0.718712 | 4_2:+7271127 | None:intergenic |
| TCTCAAGGCAAACTACCCTG+AGG | 0.745164 | 4_2:-7272221 | Msa0586160:CDS |
| TGAACAGAATGTCATGACAA+GGG | 0.758366 | 4_2:-7269853 | Msa0586160:CDS |
| AACCAAGGAAGCATACCTTG+TGG | 0.758682 | 4_2:-7271613 | Msa0586160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTTTGTTAATTTCATAT+TGG | - | chr4_2:7269671-7269690 | Msa0586160:CDS | 10.0% |
| !!! | TTTTTTGTTAATTTCATATT+GGG | - | chr4_2:7269672-7269691 | Msa0586160:CDS | 10.0% |
| !!! | TTTTATACATTGTTTTAATT+TGG | - | chr4_2:7271796-7271815 | Msa0586160:intron | 10.0% |
| !!! | TTTTAATTTCAAATTTAACA+TGG | - | chr4_2:7271904-7271923 | Msa0586160:intron | 10.0% |
| !! | TAATCATTATCATTATATAA+TGG | - | chr4_2:7272463-7272482 | Msa0586160:intron | 10.0% |
| !! | ATAAGTTATTTATCAAAACA+GGG | + | chr4_2:7270103-7270122 | None:intergenic | 15.0% |
| !! | AATAAGTTATTTATCAAAAC+AGG | + | chr4_2:7270104-7270123 | None:intergenic | 15.0% |
| !!! | TTTTATTGCTTAATAGATTT+TGG | - | chr4_2:7270767-7270786 | Msa0586160:intron | 15.0% |
| !!! | TTTTATTGCTTAATAGATTT+TGG | - | chr4_2:7270767-7270786 | Msa0586160:intron | 15.0% |
| !! | TGTATAAAAAAAATATCCAT+AGG | + | chr4_2:7271785-7271804 | None:intergenic | 15.0% |
| !! | AGAGGAATAATATTATAAAA+TGG | + | chr4_2:7272407-7272426 | None:intergenic | 15.0% |
| !!! | ATATGGAATTATATCATTTT+CGG | + | chr4_2:7272581-7272600 | None:intergenic | 15.0% |
| !!! | GTTTAATTTTCAGTTTGTTA+TGG | - | chr4_2:7269697-7269716 | Msa0586160:CDS | 20.0% |
| !!! | ATTGTGTTTTTTTGTTTGTT+TGG | - | chr4_2:7269759-7269778 | Msa0586160:CDS | 20.0% |
| !! | TTTGTTTGTAGAAATAATGA+AGG | - | chr4_2:7270077-7270096 | Msa0586160:CDS | 20.0% |
| !!! | TTTTAATCATTTATGTGTCA+TGG | - | chr4_2:7270612-7270631 | Msa0586160:intron | 20.0% |
| !!! | TTTTATTGCTTACTAGATTT+TGG | - | chr4_2:7270659-7270678 | Msa0586160:intron | 20.0% |
| !!! | TTTTATTGCTCAATAGATTT+TGG | - | chr4_2:7270713-7270732 | Msa0586160:intron | 20.0% |
| !!! | TTAGTTGTTTTCAATTCATT+TGG | - | chr4_2:7271371-7271390 | Msa0586160:intron | 20.0% |
| !!! | ATTCTGTATTTTGTTGTTAT+AGG | - | chr4_2:7271431-7271450 | Msa0586160:intron | 20.0% |
| !! | TATCTCAAGAAATACAAAAA+AGG | + | chr4_2:7271849-7271868 | None:intergenic | 20.0% |
| !!! | ATCTTTTAAATTTTCCTGAA+TGG | - | chr4_2:7271940-7271959 | Msa0586160:intron | 20.0% |
| !! | AATTTAATCATTTGATACTC+TGG | + | chr4_2:7271991-7272010 | None:intergenic | 20.0% |
| !!! | AGAGTATCAAATGATTAAAT+TGG | - | chr4_2:7271990-7272009 | Msa0586160:intron | 20.0% |
| !! | TAATTTATTGTGGATATCTA+CGG | - | chr4_2:7272288-7272307 | Msa0586160:CDS | 20.0% |
| !!! | TGTTGATTATGTTTTTGTTA+TGG | - | chr4_2:7272334-7272353 | Msa0586160:CDS | 20.0% |
| !!! | TATGGAATTATATCATTTTC+GGG | + | chr4_2:7272580-7272599 | None:intergenic | 20.0% |
| !!! | AAGAGTAAAATGTTTGATTT+GGG | - | chr4_2:7273025-7273044 | Msa0586160:intron | 20.0% |
| ! | TCACTTCAAAAAAGTCAAAT+TGG | - | chr4_2:7269446-7269465 | Msa0586160:three_prime_UTR | 25.0% |
| !!! | ATGAAATTAATGATGGGTTT+TGG | + | chr4_2:7269582-7269601 | None:intergenic | 25.0% |
| ! | TTTGTTAATTTCATATTGGG+TGG | - | chr4_2:7269675-7269694 | Msa0586160:CDS | 25.0% |
| !! | GTTGTCTTCATAAGTTATTT+TGG | - | chr4_2:7270222-7270241 | Msa0586160:intron | 25.0% |
| !!! | GATGATGTGATTGTTATTTA+TGG | - | chr4_2:7270350-7270369 | Msa0586160:intron | 25.0% |
| ! | AGAATAAGATTGAAATTCCA+TGG | - | chr4_2:7270469-7270488 | Msa0586160:intron | 25.0% |
| ! | GTGTTAGATATATGCTATAA+TGG | - | chr4_2:7270875-7270894 | Msa0586160:intron | 25.0% |
| ! | AAATAGCATATCGCAAAATA+TGG | + | chr4_2:7270932-7270951 | None:intergenic | 25.0% |
| ! | TTATTTATACCTATGTATGC+TGG | + | chr4_2:7271171-7271190 | None:intergenic | 25.0% |
| ! | AGAAGTGAACAAAATCTTAT+GGG | - | chr4_2:7271706-7271725 | Msa0586160:intron | 25.0% |
| !!! | ATTGTTTTAATTTGGTCTGA+TGG | - | chr4_2:7271804-7271823 | Msa0586160:intron | 25.0% |
| ! | ATACAAAAAAGGCTATAAAC+AGG | + | chr4_2:7271838-7271857 | None:intergenic | 25.0% |
| !! | TTTAAATTTTCCTGAATGGT+CGG | - | chr4_2:7271944-7271963 | Msa0586160:intron | 25.0% |
| ! | AATGCATTAAGATCTATTGA+GGG | + | chr4_2:7272232-7272251 | None:intergenic | 25.0% |
| ! | AATTTATTGTGGATATCTAC+GGG | - | chr4_2:7272289-7272308 | Msa0586160:CDS | 25.0% |
| ! | ATAATGATTAAAGACAGTAG+CGG | + | chr4_2:7272453-7272472 | None:intergenic | 25.0% |
| ! | CTGCAGATGATAATAAAATA+TGG | + | chr4_2:7272598-7272617 | None:intergenic | 25.0% |
| ! | CAAGAGTAAAATGTTTGATT+TGG | - | chr4_2:7273024-7273043 | Msa0586160:intron | 25.0% |
| !!! | TTTGTTGTCTTGTTTATAAC+TGG | + | chr4_2:7273365-7273384 | None:intergenic | 25.0% |
| ! | AAAAATATGTTCGTGTGTTT+GGG | - | chr4_2:7273382-7273401 | Msa0586160:five_prime_UTR | 25.0% |
| AAAGCAGGAGAAAAACAATT+TGG | - | chr4_2:7269301-7269320 | Msa0586160:three_prime_UTR | 30.0% | |
| TTCTTCACAATCATCAACTA+TGG | - | chr4_2:7269392-7269411 | Msa0586160:three_prime_UTR | 30.0% | |
| TCAGAGTTGAAATCGAATTT+GGG | + | chr4_2:7269516-7269535 | None:intergenic | 30.0% | |
| ATCAGAGTTGAAATCGAATT+TGG | + | chr4_2:7269517-7269536 | None:intergenic | 30.0% | |
| TGAAAGAAAAAGAGAACCTT+AGG | + | chr4_2:7269543-7269562 | None:intergenic | 30.0% | |
| ACCCATCATTAATTTCATTC+TGG | - | chr4_2:7269584-7269603 | Msa0586160:CDS | 30.0% | |
| CCCAGAATGAAATTAATGAT+GGG | + | chr4_2:7269588-7269607 | None:intergenic | 30.0% | |
| CCCATCATTAATTTCATTCT+GGG | - | chr4_2:7269585-7269604 | Msa0586160:CDS | 30.0% | |
| ACCCAGAATGAAATTAATGA+TGG | + | chr4_2:7269589-7269608 | None:intergenic | 30.0% | |
| TCCAAAGGATTGTATGAAAT+CGG | + | chr4_2:7269814-7269833 | None:intergenic | 30.0% | |
| !!! | TGTTTTGAAGATTGGTACTT+GGG | - | chr4_2:7270008-7270027 | Msa0586160:CDS | 30.0% |
| CAGTATAAGTCTAGATATGA+AGG | - | chr4_2:7270378-7270397 | Msa0586160:intron | 30.0% | |
| ATTGACAACATATGCTAAGT+TGG | - | chr4_2:7271035-7271054 | Msa0586160:CDS | 30.0% | |
| !! | CAATTCATTTGGTAATGAAG+TGG | - | chr4_2:7271382-7271401 | Msa0586160:intron | 30.0% |
| AATCACATCATTAAGACATC+AGG | + | chr4_2:7271414-7271433 | None:intergenic | 30.0% | |
| ! | CATAAGATTTTGTTCACTTC+TGG | + | chr4_2:7271707-7271726 | None:intergenic | 30.0% |
| CAGAAGTGAACAAAATCTTA+TGG | - | chr4_2:7271705-7271724 | Msa0586160:intron | 30.0% | |
| GATTAAATTGGCAGTATGTT+TGG | - | chr4_2:7272002-7272021 | Msa0586160:intron | 30.0% | |
| TAGATTGTACCTTGACTAAA+TGG | + | chr4_2:7272116-7272135 | None:intergenic | 30.0% | |
| TTTCTGATTAATCTGCAATC+CGG | - | chr4_2:7272183-7272202 | Msa0586160:intron | 30.0% | |
| ATGCATTAAGATCTATTGAG+GGG | + | chr4_2:7272231-7272250 | None:intergenic | 30.0% | |
| GAATGCATTAAGATCTATTG+AGG | + | chr4_2:7272233-7272252 | None:intergenic | 30.0% | |
| AATATTATTCCTCTGTTCTG+AGG | - | chr4_2:7272413-7272432 | Msa0586160:intron | 30.0% | |
| TAATGATTAAAGACAGTAGC+GGG | + | chr4_2:7272452-7272471 | None:intergenic | 30.0% | |
| ! | CATCACATGTGTCTAAAATA+TGG | - | chr4_2:7272507-7272526 | Msa0586160:intron | 30.0% |
| !! | TTTTGAACCTGTTTTTCTTC+AGG | + | chr4_2:7272941-7272960 | None:intergenic | 30.0% |
| GAAGAAAAACAGGTTCAAAA+TGG | - | chr4_2:7272941-7272960 | Msa0586160:CDS | 30.0% | |
| !! | TGAAGATAGAAAAGTTGATG+AGG | - | chr4_2:7272985-7273004 | Msa0586160:intron | 30.0% |
| !! | GAAGATAGAAAAGTTGATGA+GGG | - | chr4_2:7272986-7273005 | Msa0586160:intron | 30.0% |
| AGTTGGTTACTTAAACTCAA+TGG | - | chr4_2:7273288-7273307 | Msa0586160:CDS | 30.0% | |
| GTTGGTTACTTAAACTCAAT+GGG | - | chr4_2:7273289-7273308 | Msa0586160:CDS | 30.0% | |
| GAAATGGAAAATATCACTGT+TGG | + | chr4_2:7273343-7273362 | None:intergenic | 30.0% | |
| !! | GTCTTGTTTATAACTGGAAA+TGG | + | chr4_2:7273359-7273378 | None:intergenic | 30.0% |
| CAAAAATATGTTCGTGTGTT+TGG | - | chr4_2:7273381-7273400 | Msa0586160:five_prime_UTR | 30.0% | |
| TTTCAACTCTGATTCTCCTA+AGG | - | chr4_2:7269524-7269543 | Msa0586160:exon | 35.0% | |
| TCCGATTTCATACAATCCTT+TGG | - | chr4_2:7269810-7269829 | Msa0586160:CDS | 35.0% | |
| TGAATCAAATCCAACAGTGA+AGG | + | chr4_2:7269874-7269893 | None:intergenic | 35.0% | |
| TTCCAAGAAGAAAGATCAGA+AGG | - | chr4_2:7269918-7269937 | Msa0586160:CDS | 35.0% | |
| TCCAAGAAGAAAGATCAGAA+GGG | - | chr4_2:7269919-7269938 | Msa0586160:CDS | 35.0% | |
| !!! | CTGTTTTGAAGATTGGTACT+TGG | - | chr4_2:7270007-7270026 | Msa0586160:CDS | 35.0% |
| CACCATCTCAAAACTTATGA+TGG | - | chr4_2:7270316-7270335 | Msa0586160:intron | 35.0% | |
| !!! | CACCATCATAAGTTTTGAGA+TGG | + | chr4_2:7270321-7270340 | None:intergenic | 35.0% |
| GTCTAGATATGAAGGAGATT+TGG | - | chr4_2:7270386-7270405 | Msa0586160:intron | 35.0% | |
| TAGATATGAAGGAGATTTGG+TGG | - | chr4_2:7270389-7270408 | Msa0586160:intron | 35.0% | |
| AATTCCATGGTCTGATATCA+TGG | - | chr4_2:7270482-7270501 | Msa0586160:intron | 35.0% | |
| ACAATAACTTCCAATGTTCC+TGG | + | chr4_2:7270537-7270556 | None:intergenic | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | - | chr4_2:7270677-7270696 | Msa0586160:intron | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | - | chr4_2:7270677-7270696 | Msa0586160:intron | 35.0% | |
| TTTGGATCAGTTATGTGTCA+TGG | - | chr4_2:7270677-7270696 | Msa0586160:intron | 35.0% | |
| TTGTCAAATAGCTTCTGTAG+CGG | - | chr4_2:7270962-7270981 | Msa0586160:intron | 35.0% | |
| ATTGATCTCCCTGAAAAACA+GGG | + | chr4_2:7271090-7271109 | None:intergenic | 35.0% | |
| CAATCAACAACAGACTTTAC+TGG | - | chr4_2:7271137-7271156 | Msa0586160:CDS | 35.0% | |
| GAATGGCGGTAAAATCAAAA+CGG | - | chr4_2:7271231-7271250 | Msa0586160:CDS | 35.0% | |
| AACCATCACTCAATTCAATG+TGG | + | chr4_2:7271603-7271622 | None:intergenic | 35.0% | |
| CATTGAATTGAGTGATGGTT+TGG | - | chr4_2:7271603-7271622 | Msa0586160:CDS | 35.0% | |
| GTTTGGATAGAAGAAGTGAA+GGG | - | chr4_2:7271620-7271639 | Msa0586160:CDS | 35.0% | |
| ! | AAGATTTTGTTCACTTCTGG+AGG | + | chr4_2:7271704-7271723 | None:intergenic | 35.0% |
| TTGACTAAATGGTCGAGATT+TGG | + | chr4_2:7272105-7272124 | None:intergenic | 35.0% | |
| AAATCTCGACCATTTAGTCA+AGG | - | chr4_2:7272104-7272123 | Msa0586160:intron | 35.0% | |
| AAGGTACAATCTACATCCAA+TGG | - | chr4_2:7272123-7272142 | Msa0586160:intron | 35.0% | |
| TTCTGATTAATCTGCAATCC+GGG | - | chr4_2:7272184-7272203 | Msa0586160:intron | 35.0% | |
| AATCAAAAACCTCAGAACAG+AGG | + | chr4_2:7272425-7272444 | None:intergenic | 35.0% | |
| CGGGTGATAATAAAATCACA+AGG | + | chr4_2:7272561-7272580 | None:intergenic | 35.0% | |
| CTGAGAAACTTATCAGATTC+AGG | + | chr4_2:7272662-7272681 | None:intergenic | 35.0% | |
| !! | GATGATTTGGTTAACCACAT+CGG | - | chr4_2:7272731-7272750 | Msa0586160:CDS | 35.0% |
| ! | TTAGTGAAGCTGGAATTTTC+AGG | + | chr4_2:7272782-7272801 | None:intergenic | 35.0% |
| ATGAACAGAATGTCATGACA+AGG | - | chr4_2:7272873-7272892 | Msa0586160:CDS | 35.0% | |
| TGAACAGAATGTCATGACAA+GGG | - | chr4_2:7272874-7272893 | Msa0586160:CDS | 35.0% | |
| ! | TTTCTGAAGAAGGCAGTATA+AGG | + | chr4_2:7272906-7272925 | None:intergenic | 35.0% |
| ATTTGCTTCTGAATCTTCCA+AGG | - | chr4_2:7273125-7273144 | Msa0586160:intron | 35.0% | |
| GACATAGGAAACAGAAAATG+TGG | + | chr4_2:7273163-7273182 | None:intergenic | 35.0% | |
| AACATGACTATCAGAATCCT+CGG | + | chr4_2:7273185-7273204 | None:intergenic | 35.0% | |
| TGCGAAAGACTACAATAAAG+AGG | + | chr4_2:7273247-7273266 | None:intergenic | 35.0% | |
| ! | GTGCATATTTTATGTGCAGT+TGG | - | chr4_2:7273271-7273290 | Msa0586160:CDS | 35.0% |
| ! | TGTTTGGAACAGTGTGATTC+AGG | - | chr4_2:7269775-7269794 | Msa0586160:CDS | 40.0% |
| TGTGATTCAGGTGATGATTC+TGG | - | chr4_2:7269787-7269806 | Msa0586160:CDS | 40.0% | |
| ACCCTTCTGATCTTTCTTCT+TGG | + | chr4_2:7269923-7269942 | None:intergenic | 40.0% | |
| CCAATCTTCAAAACAGTAGC+AGG | + | chr4_2:7270003-7270022 | None:intergenic | 40.0% | |
| !!! | CCTGCTACTGTTTTGAAGAT+TGG | - | chr4_2:7270000-7270019 | Msa0586160:CDS | 40.0% |
| TTTGAAGATTGGTACTTGGG+AGG | - | chr4_2:7270011-7270030 | Msa0586160:CDS | 40.0% | |
| TTGCGAAGCATAAGCTTGTA+TGG | - | chr4_2:7270424-7270443 | Msa0586160:intron | 40.0% | |
| TGCGAAGCATAAGCTTGTAT+GGG | - | chr4_2:7270425-7270444 | Msa0586160:intron | 40.0% | |
| CTTGTATGGGAAGTTCTTGA+TGG | - | chr4_2:7270438-7270457 | Msa0586160:intron | 40.0% | |
| TTTGGACCAGTTATGTGTCA+TGG | - | chr4_2:7270839-7270858 | Msa0586160:intron | 40.0% | |
| ATGAGTCCATGACACATAAC+TGG | + | chr4_2:7270686-7270705 | None:intergenic | 40.0% | |
| !! | TGGTGTGTATTTGTTGTAGC+TGG | - | chr4_2:7271055-7271074 | Msa0586160:CDS | 40.0% |
| !! | TGTATTTGTTGTAGCTGGCA+AGG | - | chr4_2:7271060-7271079 | Msa0586160:CDS | 40.0% |
| TTGATCTCCCTGAAAAACAG+GGG | + | chr4_2:7271089-7271108 | None:intergenic | 40.0% | |
| GATTGATCTCCCTGAAAAAC+AGG | + | chr4_2:7271091-7271110 | None:intergenic | 40.0% | |
| TCAACAACAGACTTTACTGG+TGG | - | chr4_2:7271140-7271159 | Msa0586160:CDS | 40.0% | |
| TGTCATCTCAAGTGCATGAT+TGG | - | chr4_2:7271209-7271228 | Msa0586160:CDS | 40.0% | |
| TCTCAAGTGCATGATTGGAA+TGG | - | chr4_2:7271214-7271233 | Msa0586160:CDS | 40.0% | |
| AAAACAAATCTGTGCGCTCT+TGG | + | chr4_2:7271348-7271367 | None:intergenic | 40.0% | |
| GGAGAATCCAACACAAATTC+CGG | + | chr4_2:7271550-7271569 | None:intergenic | 40.0% | |
| !! | GATTCTCCATACTTTGAGAC+TGG | - | chr4_2:7271562-7271581 | Msa0586160:intron | 40.0% |
| CACTCAATTCAATGTGGTCA+TGG | + | chr4_2:7271597-7271616 | None:intergenic | 40.0% | |
| GACCACATTGAATTGAGTGA+TGG | - | chr4_2:7271598-7271617 | Msa0586160:CDS | 40.0% | |
| GGTTTGGATAGAAGAAGTGA+AGG | - | chr4_2:7271619-7271638 | Msa0586160:CDS | 40.0% | |
| !! | GATTTTTGGACTGCATGATG+TGG | - | chr4_2:7271651-7271670 | Msa0586160:CDS | 40.0% |
| AGCTAGGTGAGGTAATTTCT+TGG | + | chr4_2:7271753-7271772 | None:intergenic | 40.0% | |
| TGGCAGTATGTTTGGTTGTT+TGG | - | chr4_2:7272010-7272029 | Msa0586160:intron | 40.0% | |
| TTTAGATCAACCCTCAATGC+CGG | - | chr4_2:7272051-7272070 | Msa0586160:intron | 40.0% | |
| TGCATGCAAATCTCAACCAT+TGG | + | chr4_2:7272142-7272161 | None:intergenic | 40.0% | |
| ATTTGCATGCACAGGTTCAA+CGG | - | chr4_2:7272151-7272170 | Msa0586160:intron | 40.0% | |
| ATAATCAACACTAGTGCAGC+TGG | + | chr4_2:7272324-7272343 | None:intergenic | 40.0% | |
| ATTAACCCCCATGCAATCAA+AGG | - | chr4_2:7272620-7272639 | Msa0586160:intron | 40.0% | |
| TGAAACCTTTGATTGCATGG+GGG | + | chr4_2:7272628-7272647 | None:intergenic | 40.0% | |
| CTGAAACCTTTGATTGCATG+GGG | + | chr4_2:7272629-7272648 | None:intergenic | 40.0% | |
| CCTGAAACCTTTGATTGCAT+GGG | + | chr4_2:7272630-7272649 | None:intergenic | 40.0% | |
| TCCTGAAACCTTTGATTGCA+TGG | + | chr4_2:7272631-7272650 | None:intergenic | 40.0% | |
| ! | TTGAGTCAGATTAAGTTGCC+TGG | - | chr4_2:7272686-7272705 | Msa0586160:intron | 40.0% |
| AATCATCCATCGACATCGAA+GGG | + | chr4_2:7272718-7272737 | None:intergenic | 40.0% | |
| AAATCATCCATCGACATCGA+AGG | + | chr4_2:7272719-7272738 | None:intergenic | 40.0% | |
| TTCGATGTCGATGGATGATT+TGG | - | chr4_2:7272718-7272737 | Msa0586160:CDS | 40.0% | |
| TTCTGTTCATCATCAGAGAC+AGG | + | chr4_2:7272863-7272882 | None:intergenic | 40.0% | |
| ! | GTTTTTCTTCAGGTGGAGAA+GGG | + | chr4_2:7272931-7272950 | None:intergenic | 40.0% |
| ! | TGTTTTTCTTCAGGTGGAGA+AGG | + | chr4_2:7272932-7272951 | None:intergenic | 40.0% |
| TTCTCCACCTGAAGAAAAAC+AGG | - | chr4_2:7272931-7272950 | Msa0586160:CDS | 40.0% | |
| !! | TGAACCTGTTTTTCTTCAGG+TGG | + | chr4_2:7272938-7272957 | None:intergenic | 40.0% |
| ! | CAAGATGATGATGATGCTTC+TGG | - | chr4_2:7273055-7273074 | Msa0586160:intron | 40.0% |
| ! | TTTTCTGTTTCCTATGTCCG+AGG | - | chr4_2:7273165-7273184 | Msa0586160:intron | 40.0% |
| ! | AGTGGACTTGGTTCATCCAA+AGG | + | chr4_2:7269829-7269848 | None:intergenic | 45.0% |
| TTGGATGAACCAAGTCCACT+TGG | - | chr4_2:7269829-7269848 | Msa0586160:CDS | 45.0% | |
| TTCTTCAGACGCAAACCAAG+TGG | + | chr4_2:7269847-7269866 | None:intergenic | 45.0% | |
| GAAGAAGAGTCCTTCACTGT+TGG | - | chr4_2:7269861-7269880 | Msa0586160:CDS | 45.0% | |
| AGAGCCATGATATCAGACCA+TGG | + | chr4_2:7270489-7270508 | None:intergenic | 45.0% | |
| GTCTGATATCATGGCTCTCA+AGG | - | chr4_2:7270491-7270510 | Msa0586160:intron | 45.0% | |
| !! | ATTTGTTGTAGCTGGCAAGG+AGG | - | chr4_2:7271063-7271082 | Msa0586160:CDS | 45.0% |
| AAGGTATGCTTCCTTGGTTG+TGG | + | chr4_2:7271113-7271132 | None:intergenic | 45.0% | |
| ! | AACCAAGGAAGCATACCTTG+TGG | - | chr4_2:7271114-7271133 | Msa0586160:CDS | 45.0% |
| ! | GTCTGTTGTTGATTGCCACA+AGG | + | chr4_2:7271132-7271151 | None:intergenic | 45.0% |
| CAAGTGCATGATTGGAATGG+CGG | - | chr4_2:7271217-7271236 | Msa0586160:CDS | 45.0% | |
| AAATCTGTGCGCTCTTGGAT+TGG | + | chr4_2:7271343-7271362 | None:intergenic | 45.0% | |
| AATGCCCTCAAGGTCTGTTA+GGG | - | chr4_2:7271467-7271486 | Msa0586160:intron | 45.0% | |
| TTGGCTCAGAAAGTTGAGAC+GGG | + | chr4_2:7271524-7271543 | None:intergenic | 45.0% | |
| ! | GTTGGCTCAGAAAGTTGAGA+CGG | + | chr4_2:7271525-7271544 | None:intergenic | 45.0% |
| CAACTTTCTGAGCCAACAAC+CGG | - | chr4_2:7271528-7271547 | Msa0586160:intron | 45.0% | |
| CCAACACAAATTCCGGTTGT+TGG | + | chr4_2:7271543-7271562 | None:intergenic | 45.0% | |
| CCAACAACCGGAATTTGTGT+TGG | - | chr4_2:7271540-7271559 | Msa0586160:intron | 45.0% | |
| GCAGTTCCAGTCTCAAAGTA+TGG | + | chr4_2:7271571-7271590 | None:intergenic | 45.0% | |
| AGAAGAAGTGAAGGGAAAGC+TGG | - | chr4_2:7271628-7271647 | Msa0586160:CDS | 45.0% | |
| GAAGAAGTGAAGGGAAAGCT+GGG | - | chr4_2:7271629-7271648 | Msa0586160:CDS | 45.0% | |
| ! | GAAGGGAAAGCTGGGATTTT+TGG | - | chr4_2:7271637-7271656 | Msa0586160:CDS | 45.0% |
| GACTGCATGATGTGGAATCA+GGG | - | chr4_2:7271659-7271678 | Msa0586160:intron | 45.0% | |
| GAAATTACCTCACCTAGCTC+AGG | - | chr4_2:7271754-7271773 | Msa0586160:intron | 45.0% | |
| CCATAGGAATTACCTGAGCT+AGG | + | chr4_2:7271769-7271788 | None:intergenic | 45.0% | |
| CCTAGCTCAGGTAATTCCTA+TGG | - | chr4_2:7271766-7271785 | Msa0586160:intron | 45.0% | |
| TACAGTTTCACCGACCATTC+AGG | + | chr4_2:7271957-7271976 | None:intergenic | 45.0% | |
| TGGTTGAGATTTGCATGCAC+AGG | - | chr4_2:7272143-7272162 | Msa0586160:intron | 45.0% | |
| ATTAATCTGCAATCCGGGTG+AGG | - | chr4_2:7272189-7272208 | Msa0586160:intron | 45.0% | |
| TTAATCTGCAATCCGGGTGA+GGG | - | chr4_2:7272190-7272209 | Msa0586160:intron | 45.0% | |
| CCCATGCAATCAAAGGTTTC+AGG | - | chr4_2:7272627-7272646 | Msa0586160:intron | 45.0% | |
| ATCAAAGGTTTCAGGAGCAG+AGG | - | chr4_2:7272635-7272654 | Msa0586160:intron | 45.0% | |
| ACACTGCATTTCGGAACAGA+TGG | - | chr4_2:7272754-7272773 | Msa0586160:CDS | 45.0% | |
| CACTGCATTTCGGAACAGAT+GGG | - | chr4_2:7272755-7272774 | Msa0586160:CDS | 45.0% | |
| AGCTCTGTCATTAGTGAAGC+TGG | + | chr4_2:7272792-7272811 | None:intergenic | 45.0% | |
| CACTAATGACAGAGCTGTGT+TGG | - | chr4_2:7272796-7272815 | Msa0586160:CDS | 45.0% | |
| TAATGACAGAGCTGTGTTGG+AGG | - | chr4_2:7272799-7272818 | Msa0586160:CDS | 45.0% | |
| TGTTCATCATCAGAGACAGG+TGG | + | chr4_2:7272860-7272879 | None:intergenic | 45.0% | |
| ! | GAGAAGGGTCTTTCTGAAGA+AGG | + | chr4_2:7272916-7272935 | None:intergenic | 45.0% |
| AGCAAGGAAATGGTCTGTCT+AGG | - | chr4_2:7273086-7273105 | Msa0586160:intron | 45.0% | |
| CTGTCTAGGAAAGAATCAGC+TGG | - | chr4_2:7273100-7273119 | Msa0586160:intron | 45.0% | |
| CTATCAGAATCCTCGGACAT+AGG | + | chr4_2:7273178-7273197 | None:intergenic | 45.0% | |
| !!! | ATAAATTTTTTAATTTATTG+TGG | - | chr4_2:7272278-7272297 | Msa0586160:CDS | 5.0% |
| ! | AGACGCAAACCAAGTGGACT+TGG | + | chr4_2:7269841-7269860 | None:intergenic | 50.0% |
| TGCTGCTGATAGCAAGCTCA+AGG | - | chr4_2:7269966-7269985 | Msa0586160:CDS | 50.0% | |
| TCTCAAGGCAAACTACCCTG+AGG | - | chr4_2:7270506-7270525 | Msa0586160:intron | 50.0% | |
| ! | ATGTTCCTGGAGCATCCTCA+GGG | + | chr4_2:7270524-7270543 | None:intergenic | 50.0% |
| ! | AATGTTCCTGGAGCATCCTC+AGG | + | chr4_2:7270525-7270544 | None:intergenic | 50.0% |
| TGAGGATGCTCCAGGAACAT+TGG | - | chr4_2:7270524-7270543 | Msa0586160:intron | 50.0% | |
| !! | AAGGAGGCCCCTGTTTTTCA+GGG | - | chr4_2:7271079-7271098 | Msa0586160:CDS | 50.0% |
| GGGAGATCAATCCACAACCA+AGG | - | chr4_2:7271099-7271118 | Msa0586160:CDS | 50.0% | |
| TGCCACAAGGTATGCTTCCT+TGG | + | chr4_2:7271119-7271138 | None:intergenic | 50.0% | |
| GTGGACAAGCCAGCATACAT+AGG | - | chr4_2:7271159-7271178 | Msa0586160:CDS | 50.0% | |
| !! | CTTGAGGGCATTGCACAAAG+TGG | + | chr4_2:7271459-7271478 | None:intergenic | 50.0% |
| CACTTTGTGCAATGCCCTCA+AGG | - | chr4_2:7271457-7271476 | Msa0586160:intron | 50.0% | |
| CAATGCCCTCAAGGTCTGTT+AGG | - | chr4_2:7271466-7271485 | Msa0586160:intron | 50.0% | |
| TGGCTCAGAAAGTTGAGACG+GGG | + | chr4_2:7271523-7271542 | None:intergenic | 50.0% | |
| GGACTGCATGATGTGGAATC+AGG | - | chr4_2:7271658-7271677 | Msa0586160:intron | 50.0% | |
| CATGATGTGGAATCAGGGTC+TGG | - | chr4_2:7271664-7271683 | Msa0586160:intron | 50.0% | |
| GGAATTACCTGAGCTAGGTG+AGG | + | chr4_2:7271764-7271783 | None:intergenic | 50.0% | |
| !! | ATTTGGCTGCACCGGCTATA+TGG | + | chr4_2:7272088-7272107 | None:intergenic | 50.0% |
| CACAGGTTCAACGGTTGTAG+AGG | - | chr4_2:7272160-7272179 | Msa0586160:intron | 50.0% | |
| TAAAACTTCCCTCCCTCACC+CGG | + | chr4_2:7272205-7272224 | None:intergenic | 50.0% | |
| TCTTCACCCTTCGATGTCGA+TGG | - | chr4_2:7272709-7272728 | Msa0586160:intron | 50.0% | |
| CCACATCGGACACTGCATTT+CGG | - | chr4_2:7272745-7272764 | Msa0586160:CDS | 50.0% | |
| ACAGACCATTTCCTTGCTGC+TGG | + | chr4_2:7273084-7273103 | None:intergenic | 50.0% | |
| TGTGGCAGAGAAGCAATCCT+TGG | + | chr4_2:7273145-7273164 | None:intergenic | 50.0% | |
| AACTACCCTGAGGATGCTCC+AGG | - | chr4_2:7270516-7270535 | Msa0586160:intron | 55.0% | |
| !! | CAAGGAGGCCCCTGTTTTTC+AGG | - | chr4_2:7271078-7271097 | Msa0586160:CDS | 55.0% |
| GCCTCCCTAACAGACCTTGA+GGG | + | chr4_2:7271474-7271493 | None:intergenic | 55.0% | |
| TGCCTCCCTAACAGACCTTG+AGG | + | chr4_2:7271475-7271494 | None:intergenic | 55.0% | |
| AACCCTCAATGCCGGATCCT+CGG | - | chr4_2:7272059-7272078 | Msa0586160:intron | 55.0% | |
| CTATATGGCTGCCGAGGATC+CGG | + | chr4_2:7272073-7272092 | None:intergenic | 55.0% | |
| ATCCTCGGCAGCCATATAGC+CGG | - | chr4_2:7272074-7272093 | Msa0586160:intron | 55.0% | |
| TGGTCGAGATTTGGCTGCAC+CGG | + | chr4_2:7272096-7272115 | None:intergenic | 55.0% | |
| GACATCGAAGGGTGAAGACC+AGG | + | chr4_2:7272707-7272726 | None:intergenic | 55.0% | |
| CCGAAATGCAGTGTCCGATG+TGG | + | chr4_2:7272748-7272767 | None:intergenic | 55.0% | |
| GGTAGCCAGCAGCAAGGAAA+TGG | - | chr4_2:7273076-7273095 | Msa0586160:intron | 55.0% | |
| GCCCTCAAGGTCTGTTAGGG+AGG | - | chr4_2:7271470-7271489 | Msa0586160:intron | 60.0% | |
| ! | TGCCGAGGATCCGGCATTGA+GGG | + | chr4_2:7272064-7272083 | None:intergenic | 60.0% |
| ATCTGCAATCCGGGTGAGGG+AGG | - | chr4_2:7272193-7272212 | Msa0586160:intron | 60.0% | |
| TCTGCAATCCGGGTGAGGGA+GGG | - | chr4_2:7272194-7272213 | Msa0586160:intron | 60.0% | |
| GCTTCTGGTAGCCAGCAGCA+AGG | - | chr4_2:7273070-7273089 | Msa0586160:intron | 60.0% | |
| CTGCCGAGGATCCGGCATTG+AGG | + | chr4_2:7272065-7272084 | None:intergenic | 65.0% | |
| ! | CACCGGCTATATGGCTGCCG+AGG | + | chr4_2:7272079-7272098 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 7269289 | 7273460 | 7269289 | ID=Msa0586160;Name=Msa0586160 |
| chr4_2 | mRNA | 7269289 | 7273460 | 7269289 | ID=Msa0586160-mRNA-1;Parent=Msa0586160;Name=Msa0586160-mRNA-1;_AED=0.01;_eAED=0.01;_QI=122|1|1|1|1|1|6|250|525 |
| chr4_2 | exon | 7269289 | 7270131 | 7269289 | ID=Msa0586160-mRNA-1:exon:1836;Parent=Msa0586160-mRNA-1 |
| chr4_2 | exon | 7270974 | 7271296 | 7270974 | ID=Msa0586160-mRNA-1:exon:1835;Parent=Msa0586160-mRNA-1 |
| chr4_2 | exon | 7271569 | 7271675 | 7271569 | ID=Msa0586160-mRNA-1:exon:1834;Parent=Msa0586160-mRNA-1 |
| chr4_2 | exon | 7272195 | 7272368 | 7272195 | ID=Msa0586160-mRNA-1:exon:1833;Parent=Msa0586160-mRNA-1 |
| chr4_2 | exon | 7272717 | 7272962 | 7272717 | ID=Msa0586160-mRNA-1:exon:1832;Parent=Msa0586160-mRNA-1 |
| chr4_2 | exon | 7273204 | 7273460 | 7273204 | ID=Msa0586160-mRNA-1:exon:1831;Parent=Msa0586160-mRNA-1 |
| chr4_2 | five_prime_UTR | 7273339 | 7273460 | 7273339 | ID=Msa0586160-mRNA-1:five_prime_utr;Parent=Msa0586160-mRNA-1 |
| chr4_2 | CDS | 7273204 | 7273338 | 7273204 | ID=Msa0586160-mRNA-1:cds;Parent=Msa0586160-mRNA-1 |
| chr4_2 | CDS | 7272717 | 7272962 | 7272717 | ID=Msa0586160-mRNA-1:cds;Parent=Msa0586160-mRNA-1 |
| chr4_2 | CDS | 7272195 | 7272368 | 7272195 | ID=Msa0586160-mRNA-1:cds;Parent=Msa0586160-mRNA-1 |
| chr4_2 | CDS | 7271569 | 7271675 | 7271569 | ID=Msa0586160-mRNA-1:cds;Parent=Msa0586160-mRNA-1 |
| chr4_2 | CDS | 7270974 | 7271296 | 7270974 | ID=Msa0586160-mRNA-1:cds;Parent=Msa0586160-mRNA-1 |
| chr4_2 | CDS | 7269539 | 7270131 | 7269539 | ID=Msa0586160-mRNA-1:cds;Parent=Msa0586160-mRNA-1 |
| chr4_2 | three_prime_UTR | 7269289 | 7269538 | 7269289 | ID=Msa0586160-mRNA-1:three_prime_utr;Parent=Msa0586160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
